Citrus Sinensis ID: 041355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKKE
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHcccccEEEccccccHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHcHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEccccEEccccccccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEcHcHccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccEEEEHHEEccccccccccccHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlivgnliilvcspkkgeyVYVSAASGAVGQLVGQFAKLAGCyvvgsagskekeepdLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISqynlekpegvhNLEQLIGKRIRlegflagdYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKKE
Flexible Loop (DISEMBL)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIIsqynlekpegVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEglekisrncytlkwrvkke
Low Complexity Region (SEG)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKKE
Disordered region (IsUnstruct)
*LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS**********LDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV***
Disordered Region (DISOPRED)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVK**
Disordered Region (DISEMBL)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS*********DLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKKE
Disordered Region (DISPRO)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q39173	343	NADP-dependent alkenal do	no	no	0.861	0.451	0.691	8e-61
Q39172	345	NADP-dependent alkenal do	no	no	0.861	0.449	0.680	3e-60
Q6WAU0	342	(+)-pulegone reductase OS	N/A	no	0.861	0.453	0.645	3e-59
Q9C0Y6	349	Zinc-type alcohol dehydro	yes	no	0.838	0.432	0.461	7e-30
P76113	345	NADPH-dependent curcumin	N/A	no	0.9	0.469	0.396	1e-24
P97584	329	Prostaglandin reductase 1	yes	no	0.866	0.474	0.408	3e-24
Q91YR9	329	Prostaglandin reductase 1	yes	no	0.877	0.480	0.404	6e-24
Q9EQZ5	329	Prostaglandin reductase 1	yes	no	0.861	0.471	0.408	5e-23
Q3SZJ4	329	Prostaglandin reductase 1	yes	no	0.866	0.474	0.390	4e-22
O34812	339	Putative NADP-dependent o	yes	no	0.85	0.451	0.375	2e-21

>sp|Q39173|P2_ARATH NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2

 Score =  232 bits (592), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/172 (69%), Positives = 133/172 (77%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEK                 
Sbjct: 148 VCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYK 207

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR FP+GID+YFENVGGKMLDAVLLNM   GRIAV  +ISQYNLE  EGVH
Sbjct: 208 EESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVH 267

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  +I KRIR++GF+  D+Y  Y KFLELV+P I+EGK+ YVED+A+GLEK
Sbjct: 268 NLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEK 319

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 4

>sp|Q39172|P1_ARATH NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1

 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 131/172 (76%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEK                 
Sbjct: 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYK 209

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR FP GIDIYFENVGGKMLDAVL+NM + GRIAV  +ISQYNLE  EGVH
Sbjct: 210 EESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVH 269

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  +I KRIR++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+GLEK
Sbjct: 270 NLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEK 321

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q6WAU0|PULR_MENPI (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 137/172 (79%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +CSPKKGE V+V+AA+G+VGQLVGQFAK+ GCYVVGSAGSKEK                 
Sbjct: 147 ICSPKKGETVFVTAAAGSVGQLVGQFAKMFGCYVVGSAGSKEKVDLLKNKFGFDDAFNYK 206

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE D D ALKR FP+GIDIYF+NVGGKML+AV+ NMR+ GRIAV  ++SQY+L++PEGVH
Sbjct: 207 EESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGMVSQYSLKQPEGVH 266

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL +LI K+IR++GF+  DYYHLY KFLE+V+P I+EGK+ YVEDI+EGLE 
Sbjct: 267 NLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDISEGLES 318

Monoterpene synthase that catalyzes the specific reduction of the 4,8-double bond of (+)-pulegone to produce both (-)-menthone and (+)-isomenthone in a 70:30 ratio. Unable to utilize either (-)-isopiperitenone or (+)-cis-isopulegone, or to catalyze the reverse reaction with (-)-menthone or (+)-isomenthone. Has an absolute requirement for NADPH.

Mentha piperita (taxid: 34256)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9C0Y6|YKM8_SCHPO Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.08c PE=3 SV=1

 Score =  130 bits (326), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 16/167 (9%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA------------- 60
           PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK +  LD+             
Sbjct: 158 PKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDSGYDSVFNYKKESP 217

Query: 61  --ALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             AL R  P+GIDIYFENVGG+ +DAVL NM L+GRI     ISQYN   P  V NL  +
Sbjct: 218 FKALPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMV 277

Query: 119 IGKRIRLEGFLAGDYYHLYL-KFLELVIPAIREGKMVYVEDIAEGLE 164
           + K + ++GF+  +    Y  ++ E +   I EGK+ Y  D+ +GLE
Sbjct: 278 LVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLE 324

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P76113|CURA_ECOLI NADPH-dependent curcumin reductase OS=Escherichia coli (strain K12) GN=curA PE=1 SV=3

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 98/184 (53%), Gaps = 22/184 (11%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------- 53
           ++ +  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK              
Sbjct: 141 LLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCL 200

Query: 54  --EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYN-LEKPE 110
                D    L +  P+GIDIY+ENVGGK+ DAVL  +    RI V  ++S YN  E P 
Sbjct: 201 DHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPP 260

Query: 111 GVHNLEQLIG----KRIRLEGF-LAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           G   L  L+     KRIRL+GF +A DY H   +F   +   ++E K+ Y E+I +GLE 
Sbjct: 261 GPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLEN 320

Query: 166 ISRN 169
             + 
Sbjct: 321 APQT 324

Catalyzes the metal-independent reduction of curcumin to dihydrocurcumin (DHC) as an intermediate product, followed by further reduction to tetrahydrocurcumin (THC) as an end product. It also acts on 3-octene-2-one, 3-hepten-2-one, resveratrol, and trans-2-octenal.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: n

EC: 3

>sp|P97584|PTGR1_RAT Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 98/174 (56%), Gaps = 18/174 (10%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE----------------KE 54
           +C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS E                K 
Sbjct: 136 ICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAFNYKT 195

Query: 55  EPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKP-EGVH 113
              L+ AL+   P G D YF+NVGG+  + V+L M+  GRIA+   ISQYN   P     
Sbjct: 196 VKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYNRTGPCPPGP 255

Query: 114 NLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           + E +I +++R+EGF+   +   +  K L  ++  + EGK+ Y E I EG EK+
Sbjct: 256 SPEVIIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITEGFEKM 309

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q91YR9|PTGR1_MOUSE Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 20/178 (11%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE--------------- 52
           ++ +C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS E               
Sbjct: 133 LLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAFN 192

Query: 53  -KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK--P 109
            K    L+ AL+   P G D YF+NVGG+  +AV+L M+  GRIA+   ISQYN     P
Sbjct: 193 YKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGPCP 252

Query: 110 EGVHNLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           +G    E +I +++R+EGF+   +   +  K L  ++  + EGK+   E + EG EK+
Sbjct: 253 QGPAP-EVVIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYVTEGFEKM 309

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q9EQZ5|PTGR1_CAVPO Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 26/181 (14%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE--------------- 52
           ++ VC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS E               
Sbjct: 133 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFN 192

Query: 53  -KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNL--EKP 109
            K    L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+   IS YN   + P
Sbjct: 193 YKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLP 252

Query: 110 EGVHNLEQLIGKRIRLEGFLA----GDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
            G  + E +I K++R+EGF+     GD      K L  ++  + EGK+ Y E + +G E 
Sbjct: 253 PG-PSPESIIYKQLRIEGFIVYRWQGDVRE---KALRDLMKWVLEGKIQYHEHVTKGFEN 308

Query: 166 I 166
           +
Sbjct: 309 M 309

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q3SZJ4|PTGR1_BOVIN Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 18/174 (10%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE----------------KE 54
           +C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS E                K 
Sbjct: 136 ICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLKKHGFDVALNYKT 195

Query: 55  EPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKP-EGVH 113
              L+ ALK   P+G D YF+NVGG+  +  +  M+  GRIA+   IS YN   P     
Sbjct: 196 VKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSPLSPGP 255

Query: 114 NLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           + E +I K + L+GF+   +   +  K L  ++  + EGK+ Y E + EG E +
Sbjct: 256 SPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEHVTEGFENM 309

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|O34812|YFMJ_BACSU Putative NADP-dependent oxidoreductase YfmJ OS=Bacillus subtilis (strain 168) GN=yfmJ PE=2 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 88/173 (50%), Gaps = 20/173 (11%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE-----------------KEEP 56
           PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS E                 K   
Sbjct: 143 PKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTAD 202

Query: 57  DLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE---GVH 113
           D+  AL+   P G+D+YF+NVGG + DAV+  +    RI V   IS YN E      G  
Sbjct: 203 DIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPR 262

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
              +LI  +  ++GF+  DY   + +  + +   ++ GK+ Y E I EG E I
Sbjct: 263 VQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENI 315

Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
255577891	345	alcohol dehydrogenase, putative [Ricinus	0.861	0.449	0.75	3e-68
342898881	352	ketone/zingerone synthase 2 [Rubus idaeu	0.861	0.440	0.715	2e-63
225434189	345	PREDICTED: NADP-dependent alkenal double	0.861	0.449	0.715	3e-63
224117858	348	predicted protein [Populus trichocarpa]	0.861	0.445	0.680	1e-61
224092856	345	predicted protein [Populus trichocarpa]	0.855	0.446	0.695	1e-61
6692816	343	allyl alcohol dehydrogenase [Nicotiana t	0.855	0.448	0.719	4e-61
444302246	351	Chain A, X-ray Crystal Structure Of A Do	0.855	0.438	0.719	4e-61
308943732	347	alcohol dehydrogenase [Camellia sinensis	0.855	0.443	0.684	7e-61
224092848	348	predicted protein [Populus trichocarpa]	0.861	0.445	0.691	9e-61
224117874	348	predicted protein [Populus trichocarpa]	0.861	0.445	0.674	4e-60

>gi|255577891|ref|XP_002529818.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223530695|gb|EEF32567.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE+VYVSAASGAVGQLVGQFAK++GCYVVGSAGSKEK                 
Sbjct: 150 VCSPKKGEFVYVSAASGAVGQLVGQFAKVSGCYVVGSAGSKEKVDMLKNKFGFDDAFNYK 209

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EEPDLDAALKR+FP+GIDIYFENVGG+MLDAVLLNMR+RGRIAV  +ISQYNL+KPEGVH
Sbjct: 210 EEPDLDAALKRYFPEGIDIYFENVGGEMLDAVLLNMRIRGRIAVCGMISQYNLDKPEGVH 269

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  +IGKRIR+EGFLAGD+YHLY   L++VIP I+EGK+VYVED+AEGLE 
Sbjct: 270 NLSAIIGKRIRMEGFLAGDFYHLYPNLLDMVIPYIKEGKIVYVEDVAEGLEN 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342898881|gb|AEL78826.1| ketone/zingerone synthase 2 [Rubus idaeus]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 139/172 (80%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE VY+SAASGAVGQLVGQFAKL+GCYVVGSAG+KEK                 
Sbjct: 157 VCSPKKGETVYISAASGAVGQLVGQFAKLSGCYVVGSAGTKEKVDLLKNKFGFDEAFNYK 216

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EEP+LDAALKR+FP+GIDIYFENVGGKMLDAVLLNMR RGRIAV  +ISQYNLEKPEGV 
Sbjct: 217 EEPNLDAALKRYFPEGIDIYFENVGGKMLDAVLLNMRFRGRIAVCGMISQYNLEKPEGVQ 276

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  LI K +R++GF   +YYHLY KFLE+V+PAI+EGK+ YVED+ EGLE 
Sbjct: 277 NLMSLIYKEVRIQGFGVLNYYHLYEKFLEMVLPAIKEGKITYVEDVVEGLES 328

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434189|ref|XP_002279359.1| PREDICTED: NADP-dependent alkenal double bond reductase P2 [Vitis vinifera] gi|147792339|emb|CAN61471.1| hypothetical protein VITISV_043825 [Vitis vinifera]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 140/172 (81%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +CSPKKGEYV++SAASGAVGQLVGQFAKL GCYVVGSAG+KEK                 
Sbjct: 150 ICSPKKGEYVFISAASGAVGQLVGQFAKLLGCYVVGSAGTKEKVDLLKNKFGFDEAFNYK 209

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL+A LKR+FP+GIDIYFENVGGKMLDAVL+NMRL GRIAV  +ISQYNLE+PEGV 
Sbjct: 210 EEQDLEACLKRYFPEGIDIYFENVGGKMLDAVLVNMRLHGRIAVCGMISQYNLEEPEGVR 269

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  ++ KRIR+EGFL  DYYHLY KFL+L++P IREGK+VYVEDIAEGLE 
Sbjct: 270 NLFTIVTKRIRMEGFLVFDYYHLYPKFLDLIMPYIREGKIVYVEDIAEGLES 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117858|ref|XP_002331649.1| predicted protein [Populus trichocarpa] gi|222874045|gb|EEF11176.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 141/172 (81%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +CSPKKGE+V++SAASGAVGQLVGQFAKL GCYVVGSAGSK+K                 
Sbjct: 153 ICSPKKGEFVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDDAFNYK 212

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DLDAALKR+FP GIDIYFENVGGKMLDAV+LNMR+RGRI+V  ++SQYNLE+PEGVH
Sbjct: 213 EELDLDAALKRYFPDGIDIYFENVGGKMLDAVVLNMRVRGRISVCGMVSQYNLEQPEGVH 272

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  L+ KRI +EGFL  D++HL+ K+L++V+P I++GK+VYVEDIAEGLE 
Sbjct: 273 NLMHLVPKRIHMEGFLVYDFFHLFPKYLDMVLPYIKQGKIVYVEDIAEGLEN 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092856|ref|XP_002309725.1| predicted protein [Populus trichocarpa] gi|222852628|gb|EEE90175.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 137/171 (80%), Gaps = 17/171 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +C+PKKGEYVY+SAASGAVGQ+VGQFAKL+GCYVVGSAGSKEK                 
Sbjct: 150 ICTPKKGEYVYISAASGAVGQIVGQFAKLSGCYVVGSAGSKEKVDLLKNKFGFDEAFNYK 209

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EEPDL AALKR+FP+GIDIYFENVGGKMLDAVL NMR  GRIA   +ISQYNLEK EGVH
Sbjct: 210 EEPDLTAALKRYFPEGIDIYFENVGGKMLDAVLANMRTLGRIAACGMISQYNLEKHEGVH 269

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  ++ K+IR++GFLA  YYHLY KFLE+ +P I++GK+VYVED AEGLE
Sbjct: 270 NLTLIVWKQIRMQGFLAASYYHLYPKFLEMALPYIKQGKIVYVEDKAEGLE 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692816|dbj|BAA89423.1| allyl alcohol dehydrogenase [Nicotiana tabacum]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 136/171 (79%), Gaps = 17/171 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE V+VSAASGAVGQLVGQFAK+ GCYVVGSAGSKEK                 
Sbjct: 148 VCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAFNYK 207

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR+FP GIDIYFENVGGKMLDAVL+NM+L GRIAV  +ISQYNLE+ EGVH
Sbjct: 208 EEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVH 267

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  LI KRIR+EGFL  DYYHLY K+LE+VIP I+ GK+VYVED+A GLE
Sbjct: 268 NLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAHGLE 318

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444302246|pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302247|pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302248|pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302249|pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302250|pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum gi|444302251|pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 136/171 (79%), Gaps = 17/171 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE V+VSAASGAVGQLVGQFAK+ GCYVVGSAGSKEK                 
Sbjct: 148 VCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAFNYK 207

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR+FP GIDIYFENVGGKMLDAVL+NM+L GRIAV  +ISQYNLE+ EGVH
Sbjct: 208 EEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVH 267

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  LI KRIR+EGFL  DYYHLY K+LE+VIP I+ GK+VYVED+A GLE
Sbjct: 268 NLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAHGLE 318

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308943732|gb|ADO51748.1| alcohol dehydrogenase [Camellia sinensis]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 137/171 (80%), Gaps = 17/171 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +CSPK+G+YV++SAASGAVGQLVGQFAKL GCYVVGSAG+KEK                 
Sbjct: 152 ICSPKQGDYVFISAASGAVGQLVGQFAKLLGCYVVGSAGTKEKVDLLKNKFGFDEAFNYK 211

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL+AALKR+FP GI+IYFENVGGKMLDAVL NMRL  RIAV  +ISQYNLE+PEGVH
Sbjct: 212 EEKDLEAALKRYFPNGINIYFENVGGKMLDAVLANMRLHSRIAVCGMISQYNLERPEGVH 271

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  LI KR+R+EGF+  DYYHLY KFLE+++P I+ GK+ YVED+AEGLE
Sbjct: 272 NLFCLITKRVRMEGFIVFDYYHLYPKFLEMILPCIKGGKITYVEDVAEGLE 322

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092848|ref|XP_002309722.1| predicted protein [Populus trichocarpa] gi|118483208|gb|ABK93507.1| unknown [Populus trichocarpa] gi|222852625|gb|EEE90172.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 119/172 (69%), Positives = 136/172 (79%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE+VY+SAASGAVGQLVGQFAKL GCYVVGSAGSKEK                 
Sbjct: 153 VCSPKKGEHVYISAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKNKFGFDEAFNYK 212

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EEPDL+AAL R+FP+GIDIYFENVGGKMLDAVL NMR RGRIAV  +ISQYNL+KPEGV 
Sbjct: 213 EEPDLNAALGRYFPEGIDIYFENVGGKMLDAVLPNMRFRGRIAVCGMISQYNLDKPEGVF 272

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  ++ KR+R+EGF+  DYY  Y KFL+ V+P IREGK+ Y+EDI+EGLE 
Sbjct: 273 NLMTVVYKRVRIEGFVVTDYYDQYPKFLDFVLPCIREGKIKYMEDISEGLEN 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117874|ref|XP_002331653.1| predicted protein [Populus trichocarpa] gi|222874049|gb|EEF11180.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 140/172 (81%), Gaps = 17/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           +CSPKKGE+V++SAASGAVGQLVGQFAKL GCYVVGSAGSK+K                 
Sbjct: 153 ICSPKKGEFVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDDAFNYK 212

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DLDAALKR+FP GIDIYFENVGGK+LDAVLLNMR+RGRI+V  ++SQYNLE+PEGVH
Sbjct: 213 EELDLDAALKRYFPDGIDIYFENVGGKILDAVLLNMRVRGRISVCGMVSQYNLEQPEGVH 272

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  L+ KRI +EGFL   ++HL+ K+L++V+P I++GK+VYVEDIAEGLE 
Sbjct: 273 NLMHLVLKRIHMEGFLVYYFFHLFPKYLDMVLPYIKQGKIVYVEDIAEGLEN 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2148166	343	AT5G16990 [Arabidopsis thalian	0.627	0.329	0.707	1.8e-58
TAIR|locus:2148131	345	AER "alkenal reductase" [Arabi	0.627	0.327	0.707	1.3e-57
TAIR|locus:2148186	345	AT5G17000 [Arabidopsis thalian	0.627	0.327	0.707	3.3e-57
UNIPROTKB|Q6WAU0	342	Q6WAU0 "(+)-pulegone reductase	0.622	0.327	0.687	6.9e-57
TAIR|locus:2028736	351	AT1G26320 [Arabidopsis thalian	0.622	0.319	0.687	8.8e-57
TAIR|locus:2153759	353	AT5G37980 [Arabidopsis thalian	0.622	0.317	0.669	6.1e-56
TAIR|locus:2148116	346	AT5G16960 [Arabidopsis thalian	0.622	0.323	0.651	7.8e-54
TAIR|locus:505006405	346	AT3G59845 [Arabidopsis thalian	0.622	0.323	0.633	1.6e-51
TAIR|locus:2034109	350	AT1G65560 [Arabidopsis thalian	0.622	0.32	0.601	1.4e-48
TAIR|locus:2097795	350	AT3G03080 [Arabidopsis thalian	0.622	0.32	0.714	3.7e-39

TAIR|locus:2148166 AT5G16990 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 80/113 (70%), Positives = 93/113 (82%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE DL AALKR FP+GID+YFENVGGKMLDAVLLNM   GRIAV  +ISQYNLE  EGV
Sbjct:   207 KEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGV 266

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
             HNL  +I KRIR++GF+  D+Y  Y KFLELV+P I+EGK+ YVED+A+GLEK
Sbjct:   267 HNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEK 319

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

TAIR|locus:2148131 AER "alkenal reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 80/113 (70%), Positives = 92/113 (81%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE DL AALKR FP GIDIYFENVGGKMLDAVL+NM + GRIAV  +ISQYNLE  EGV
Sbjct:   209 KEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGV 268

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
             HNL  +I KRIR++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+GLEK
Sbjct:   269 HNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEK 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP;IMP

GO:0032440 "2-alkenal reductase [NAD(P)

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2148186 AT5G17000 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 80/113 (70%), Positives = 91/113 (80%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEEPDL AALKR FP GIDIYFENVGGKMLDAVLLNM   GRIAV  +ISQYNLE  EGV
Sbjct:   209 KEEPDLSAALKRCFPTGIDIYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGV 268

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
             HNL  +I KRIR++GF   D+Y  Y KFL+ V+P I+EGK+ YVED+A+GLEK
Sbjct:   269 HNLSNIIYKRIRIQGFAVFDFYEKYSKFLDFVLPHIKEGKITYVEDVADGLEK 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=IEP

UNIPROTKB|Q6WAU0 Q6WAU0 "(+)-pulegone reductase" [Mentha x piperita (taxid:34256)]

 Score = 415 (151.1 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 77/112 (68%), Positives = 97/112 (86%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE D D ALKR FP+GIDIYF+NVGGKML+AV+ NMR+ GRIAV  ++SQY+L++PEGV
Sbjct:   206 KEESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGMVSQYSLKQPEGV 265

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             HNL +LI K+IR++GF+  DYYHLY KFLE+V+P I+EGK+ YVEDI+EGLE
Sbjct:   266 HNLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDISEGLE 317

GO:0042214 "terpene metabolic process" evidence=IDA

GO:0052579 "(+)-pulegone reductase, (+)-isomenthone as substrate, activity" evidence=IDA

GO:0052580 "(+)-pulegone reductase, (-)-menthone as substrate, activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

TAIR|locus:2028736 AT1G26320 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 77/112 (68%), Positives = 91/112 (81%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE D  AALKR+FP+GIDIYFENVGGKMLDAVL+NM+L GR+AV  +ISQYNL  PEGV
Sbjct:   215 KEEKDFSAALKRYFPEGIDIYFENVGGKMLDAVLINMKLHGRVAVCGMISQYNLVDPEGV 274

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             HNL  ++ KRI+L+GF   D+Y  Y KFL+ V+P IREGK+ YVEDIAEG E
Sbjct:   275 HNLPTILYKRIQLQGFGVCDFYDKYPKFLDFVLPYIREGKITYVEDIAEGFE 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153759 AT5G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 75/112 (66%), Positives = 92/112 (82%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE DL AALKR FP+GIDIYFENVGGKMLDAVL NMR  GRIA   +ISQYNL++PEGV
Sbjct:   217 KEEHDLSAALKRCFPEGIDIYFENVGGKMLDAVLENMRTHGRIAACGMISQYNLKEPEGV 276

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             HNL  ++ KRIR++GF A +++  Y KFL+ ++P +REGK+ YVEDIA+GLE
Sbjct:   277 HNLASIVYKRIRVQGFAAVEFFDKYSKFLDFILPYVREGKITYVEDIAQGLE 328

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148116 AT5G16960 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 73/112 (65%), Positives = 89/112 (79%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEE +L  ALKR FP+GIDIYFENVGGKMLDAV+LNMR  GRIA   +ISQYNL+ PEG+
Sbjct:   210 KEEHNLIGALKRCFPEGIDIYFENVGGKMLDAVILNMRPHGRIAACGMISQYNLKNPEGI 269

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             + L  +  KRIR+EGF   DY+H Y +FLE V+P I+EGK+ YVED+A+GLE
Sbjct:   270 YGLSLITYKRIRIEGFNCFDYFHKYSEFLEFVVPYIKEGKIKYVEDVADGLE 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:505006405 AT3G59845 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 71/112 (63%), Positives = 88/112 (78%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             KEEPDLD+ALKR  P+GIDIYFENVGGKMLDAVLLNM+  GRIAV  +ISQY+LE  + +
Sbjct:   212 KEEPDLDSALKRCVPKGIDIYFENVGGKMLDAVLLNMKTYGRIAVCGMISQYHLETRDRL 271

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
              NL  +I K+IR++GF + D+   + KFLE V+P I+E K+ YVEDI EGLE
Sbjct:   272 QNLPDIIFKKIRMQGFASYDFIDRFPKFLEFVLPYIKEEKLAYVEDIVEGLE 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2034109 AT1G65560 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 68/113 (60%), Positives = 87/113 (76%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE-KPEG 111
             KEE DLD ALKR+FP+GIDIYF+NVGG MLDA LLNM++RGRIA+  ++S  +L    +G
Sbjct:   213 KEEADLDTALKRYFPEGIDIYFDNVGGSMLDAALLNMKVRGRIALCGMVSLQSLSTSSQG 272

Query:   112 VHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             + NL   I KR+RLEGFL  DY H++ +FLE V    +EGK+VYVEDI+EGL+
Sbjct:   273 IKNLYSAIYKRLRLEGFLQSDYLHIFPQFLENVKRYYKEGKIVYVEDISEGLD 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2097795 AT3G03080 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query:    53 KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
             K EPDL+AALKR FP+GIDIYFENVGGKMLDAVLLNM+L GRIAV  +ISQYNLE  EGV
Sbjct:   214 KAEPDLNAALKRCFPEGIDIYFENVGGKMLDAVLLNMKLHGRIAVCGMISQYNLEDQEGV 273

Query:   113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
             HNL  +I KRIR++GF+  DY+  +LKFL+ V+P IREGK+ YVED+ EGLE
Sbjct:   274 HNLANVIYKRIRIKGFVVSDYFDKHLKFLDFVLPYIREGKITYVEDVVEGLE 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034730001 SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_72, whole genome shotgun sequence); (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	2e-94
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	6e-78
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-69
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-53
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	2e-49
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-31
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	6e-30
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	5e-21
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-13
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	6e-12
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-11
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-11
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-10
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	5e-10
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	6e-10
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	4e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	4e-09
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	5e-09
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	7e-08
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	6e-06
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	1e-05
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	2e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	4e-05
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-05
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	7e-05
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	7e-05
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	8e-05
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-04
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	1e-04
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	4e-04
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	4e-04
smart00829	287	smart00829, PKS_ER, Enoylreductase	5e-04
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	5e-04
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	6e-04
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	9e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	0.002
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	0.003

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score =  277 bits (710), Expect = 2e-94
 Identities = 115/176 (65%), Positives = 129/176 (73%), Gaps = 17/176 (9%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------- 53
              VC PKKGE V+VSAASGAVGQLVGQ AKL GCYVVGSAGS EK              
Sbjct: 143 FYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAF 202

Query: 54  ---EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE 110
              EEPDLDAALKR+FP GIDIYF+NVGGKMLDAVLLNM L GRIA   +ISQYNLE PE
Sbjct: 203 NYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPE 262

Query: 111 GVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           GV NL  +I KR++++GFL GDY H Y +FLE +   I+EGK+ YVEDIA+GLE  
Sbjct: 263 GVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESA 318

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score =  235 bits (601), Expect = 6e-78
 Identities = 105/171 (61%), Positives = 128/171 (74%), Gaps = 17/171 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKG+ V+VSAASGAVGQLVGQ AKL GCYVVGSAGS +K                 
Sbjct: 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYK 212

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EEPDLDAALKR+FP+GIDIYF+NVGG MLDA LLNM++ GRIAV  ++S  +L   +G+H
Sbjct: 213 EEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIH 272

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  LI KRIR++GFL  DY HL+ +FLE V    ++GK+VY+ED++EGLE
Sbjct: 273 NLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLE 323

Length = 348

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score =  213 bits (546), Expect = 1e-69
 Identities = 81/172 (47%), Positives = 102/172 (59%), Gaps = 16/172 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----EE---------- 55
           +  PK GE V VSAA+GAVG +VGQ AKL G  VVG AGS EK     EE          
Sbjct: 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYK 199

Query: 56  -PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN 114
            PDL  ALK   P GID+YF+NVGG++LDA L  +   GRIA+   ISQYN  +P G  N
Sbjct: 200 TPDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKN 259

Query: 115 LEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           L  +I KR+ ++GF+  DY   + + L  +   + EGK+ Y ED+ EGLE  
Sbjct: 260 LGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENA 311

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score =  172 bits (438), Expect = 3e-53
 Identities = 78/171 (45%), Positives = 98/171 (57%), Gaps = 18/171 (10%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPD 57
           PK GE V VSAA+GAVG +VGQ AKL GC VVG AG  EK                +  D
Sbjct: 148 PKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAED 207

Query: 58  LDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYN-LEKPEGVHNLE 116
              ALK   P+GID+YFENVGG++LDAVL  + L  RI V   ISQYN  E P G   L 
Sbjct: 208 FAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLP 267

Query: 117 QLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
            L+ KR+R++GF+    Y   + + L  +   ++EGK+ Y E I +GLE  
Sbjct: 268 LLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENA 318

Length = 340

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score =  161 bits (410), Expect = 2e-49
 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 16/174 (9%)

Query: 9   ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------- 53
           + +C PK GE V V+ A+GAVG LVGQ AK+ GC V+G AGS +K               
Sbjct: 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNY 195

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           +   L+ ALK   P GID YF+NVGG+    VL +M   GR+AV   IS YN ++P+   
Sbjct: 196 KTVSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGP 255

Query: 114 NL-EQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
            + E +I K++++EGF+   +   + + L+ ++  I+EGK+ Y E + EG E +
Sbjct: 256 YVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENM 309

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  114 bits (287), Expect = 5e-31
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 21/176 (11%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDL 58
            K GE V V+AA+G  GQ   Q AKLAGC+V+G+  S EK E                DL
Sbjct: 137 MKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDL 196

Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK---PEGVHNL 115
              LK+ +P+G+D+ +E+VGG+M D  + N+ L+GR+ V   IS Y       P     L
Sbjct: 197 GEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL 256

Query: 116 -EQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAE--GLEKISR 168
             +L+ K   + GF    Y  L  + L+ ++   + GK+V   D     GLE ++ 
Sbjct: 257 PPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVAD 312

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score =  111 bits (278), Expect = 6e-30
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 20/175 (11%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--------------- 55
           +C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EK                 
Sbjct: 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKT 192

Query: 56  -PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNL--EKPEGV 112
              L+  LK+  P G D YF+NVGG+  + V+  M+  GRIA+   IS YN     P G 
Sbjct: 193 VKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPG- 251

Query: 113 HNLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
              E +I + +R+EGF+   +   +  K L+ ++  + EGK+ Y E + EG E +
Sbjct: 252 PPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENM 306

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 27/169 (15%)

Query: 22  VSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-----EEPDLDAA-----------LKR 64
           VS A+GA G L GQ  +L GC  VVG  GS EK      E   DAA           L+ 
Sbjct: 160 VSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRE 219

Query: 65  WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKP------EGVHNLEQL 118
             P+G+D+YF+NVGG++ D V+  M     I +   ISQYN + P      E     E +
Sbjct: 220 LCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEAT---EAI 276

Query: 119 IGKR-IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           + +R I  E FL  +Y   + + +  +   ++EGK+   E + EGLE  
Sbjct: 277 LKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENA 325

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           K GE V V  A+G VG    Q AK  G  VV    S EK E                D  
Sbjct: 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFV 200

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             ++     +G+D+  + VGG    A L  +   GR+     +S      P    NL  L
Sbjct: 201 EQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALS----GGPPVPLNLLPL 256

Query: 119 IGKRIRLEGFLAGDYYH-LYLKFLELVIPAIREGK 152
           +GKR+ L G   G        + L  +   +  GK
Sbjct: 257 LGKRLTLRGVTLGSRDPEALAEALAELFDLLASGK 291

Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 12  CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEP 56
              K GE V V   SGAVG    Q A+ AG  V+ +A S E                   
Sbjct: 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAE 199

Query: 57  DLDAALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL 115
           DL   +      QG+D+  E +    L   L  +   GRI V      Y      G   +
Sbjct: 200 DLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVV------YGSGGLRGTIPI 253

Query: 116 EQLIGKRIRLEGFL 129
             L+ K   + G L
Sbjct: 254 NPLMAKEASIRGVL 267

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 23/127 (18%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------------EPDLDA 60
           + G+ V +   +G VG +  Q AK AG  V  +A S++                E  ++ 
Sbjct: 143 QAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASSEKAAFARSLGADPIIYYRETVVEY 202

Query: 61  ALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG 120
             +    +G D+ F+ VGG+ LDA    + L GR+      +          H+L  L  
Sbjct: 203 VAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGAT---------HDLAPLSF 253

Query: 121 KRIRLEG 127
           +     G
Sbjct: 254 RNATYSG 260

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 22/135 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           K G+ V V  A G VG L  Q AK AG  V+ +  S EK               +E DL+
Sbjct: 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLE 191

Query: 60  AALKRWFPQGIDIYFENVGGKM-LDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             L+     G D+  + VGG   L   L  +R  GRI V    S            L +L
Sbjct: 192 EELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDD-----LRRL 246

Query: 119 IGKRIRLEGFLAGDY 133
           + K + + G   G  
Sbjct: 247 LFKELTIIGSTGGTR 261

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 21/129 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           K GE V +   +  VG    Q AK  G  V+ +AGS+EK                  D  
Sbjct: 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFA 197

Query: 60  AALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             +K     +G+D+  + VGG  L   L  +   GR+ +  ++     E      +L  L
Sbjct: 198 EEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAKAEL-----DLAPL 252

Query: 119 IGKRIRLEG 127
           + KR+ L G
Sbjct: 253 LRKRLTLTG 261

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 28  AVGQLVGQFAKLAG-CYVVGSAGSKEKEE---------------PDLDAALKRWFP-QGI 70
            VG    Q AK  G   V+    S+EK E                D    ++     +G+
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGV 60

Query: 71  DIYFENVG-GKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFL 129
           D+  + VG    L+  L  +R  GR+ V  +     +  P     L  L+ K + + G L
Sbjct: 61  DVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFP-----LRDLLLKELTILGSL 115

Query: 130 AGDYYHLYLKFLELVI 145
            G       + LEL+ 
Sbjct: 116 GGGREEFE-EALELLA 130

Length = 131

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-PDLDAA----------L 62
            K G+ V +  A+G VG    Q AK  G  V+ +A +   +    L A            
Sbjct: 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAANADFLRSLGADEVIDYTKGDFE 201

Query: 63  KRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
           +   P G+D   + VGG+ L   L  ++  GR+ 
Sbjct: 202 RAAAPGGVDAVLDTVGGETLARSLALVKPGGRLV 235

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDL 58
           + GE V V  A   VG    Q AKL G  V+ +AGS++K                +E  +
Sbjct: 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFV 224

Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
               +    +G+D+  E+VG    +  L ++   GR+ 
Sbjct: 225 REVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLV 262

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           + GE V V  A+G VG    Q AK  G  V+ +A S+EK                 PDL 
Sbjct: 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLR 197

Query: 60  AALK-RWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
             +K     +G+D+ ++ VGG + +A L ++   GR+ V
Sbjct: 198 ERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLV 236

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 16/98 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           K G+ V V AA+G VG L+ Q+AK  G  V+G+  S+EK E                D  
Sbjct: 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFV 194

Query: 60  AALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
             ++     +G+D+ ++ VG    +  L ++R RG + 
Sbjct: 195 ERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLV 232

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 36/176 (20%)

Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR-------- 64
             KKG+ V V+ A G VG    Q AK  G  V+    S EK    L    +         
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEK----LKILKELGADYVIDG 214

Query: 65  -------WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQ 117
                      G D+  E VG   ++  L ++   GR+ +       N+           
Sbjct: 215 SKFSEDVKKLGGADVVIELVGSPTIEESLRSLNKGGRLVLIG-----NVTPDPAPLRPGL 269

Query: 118 LIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM-------VYVEDIAEGLEKI 166
           LI K IR+ G ++          +E  +  ++EGK+       V +EDI E LE +
Sbjct: 270 LILKEIRIIGSISAT-----KADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDL 320

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDL 58
            + G+ V ++AAS +VG    Q A  AG  V+ +  + EK               +E DL
Sbjct: 142 LRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDL 201

Query: 59  DAALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
            A + R    +G+D+ F+ VGG     +   +   G + V
Sbjct: 202 VAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVV 241

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 16  KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLDA 60
            G  + ++  +G VG    Q AK AG  V+ +  SK   E                D+  
Sbjct: 141 AGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVKSLGADHVIDYNDEDVCE 199

Query: 61  ALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
            +K     +G+D   + VGG+   A+   +   G +  
Sbjct: 200 RIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVC 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 13/100 (13%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP-------------DLDAA 61
             GE V V+ ASG VG  + Q AK  G  V+  AG+ ++E                L A 
Sbjct: 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLAD 235

Query: 62  LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSII 101
            K    + +D+  + VGG +   +L  +R  GR   +  I
Sbjct: 236 AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAI 275

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDL 58
              G+ V V+AA+G +G L+ Q AK AG  VVG+AG   K                 PD 
Sbjct: 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDW 199

Query: 59  DAALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRI 95
              ++      G+ +  + VGG +  A L  +   GR 
Sbjct: 200 PDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRF 237

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 23/134 (17%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDL 58
           K G+ V V    G V     QFAK AG  V+ ++ S EK                  PD 
Sbjct: 159 KPGDTVLVQGTGG-VSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDW 217

Query: 59  DAALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQ 117
              + +    +G+D   E  G   L   +  +   G I++   +S       E    L  
Sbjct: 218 GEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLS-----GFEAPVLLLP 272

Query: 118 LIGKRIRLEGFLAG 131
           L+ K   L G   G
Sbjct: 273 LLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 26/176 (14%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPD 57
           KKG+ V + A +  VG    Q A+  G   + +  S+EK                 EE  
Sbjct: 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGF 198

Query: 58  LDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQ 117
                K    +G+++  + VGG  L      + + G+  V   +    +EK     NL  
Sbjct: 199 APKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKVEKF----NLLP 254

Query: 118 LIGKRIRLEGFL---AGDYY--HLYLKFLELVIPAIREGKMVYVEDIAEGLEKISR 168
           L+ KR  +         D Y   L   F   V+P + EG++  + D    LE+++ 
Sbjct: 255 LLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAE 310

Length = 334

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 35/184 (19%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAG---CYVVGSAGSKEK------------EEPDLD 59
             G++V  +AA+ AVG+++ Q AKL G     VV      E+               DL 
Sbjct: 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLA 196

Query: 60  AALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQY-NLEKPEGVHNLEQ 117
             +K      G  +  + VGG+    +  ++R  G   V+     Y  L           
Sbjct: 197 QRVKEATGGAGARLALDAVGGESATRLARSLR-PGGTLVN-----YGLLSGEPVPFPRSV 250

Query: 118 LIGKRIRLEGFLAGDYYH-----LYLKFLELVIPAIREGKM------VY-VEDIAEGLEK 165
            I K I + GF    + H        +    VI  +  G +       + +ED  E +  
Sbjct: 251 FIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAA 310

Query: 166 ISRN 169
             + 
Sbjct: 311 AEQP 314

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-------PDLDAALKRWF 66
              G+ V +  ASG VGQ + + A LAG  V G+A  +           P +D   K W 
Sbjct: 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVYGTASERNHAALRELGATP-IDYRTKDWL 195

Query: 67  PQ-----GIDIYFENVGG 79
           P      G+D+ F+ VGG
Sbjct: 196 PAMLTPGGVDVVFDGVGG 213

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 21/129 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           K GE V +   +  +G    Q AK  G  V  +AGS EK                E D  
Sbjct: 138 KAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFV 197

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             +K     +G+D+  + VGG  L+  +  + L GRI              +   +L  L
Sbjct: 198 EVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGF-----QGGRKAELDLGPL 252

Query: 119 IGKRIRLEG 127
           + KR+ + G
Sbjct: 253 LAKRLTITG 261

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK 51
           K G+ V ++ ASG VG    Q AK  G +V G   ++
Sbjct: 142 KPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCSTR 178

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 17  GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--PDLDAALKRWFPQGI---- 70
           G  V V+ ASG VG+   Q A LAG +VV   GS  + E   +L AA        +    
Sbjct: 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAP 192

Query: 71  -DIYFENVGGKMLDAVL 86
            D+  ++VGG  L   L
Sbjct: 193 VDLVVDSVGGPQLARAL 209

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 17/85 (20%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRW-FPQGIDIY 73
            KGE++ +  A+G  G +  Q A+L G  +  +A S +K E      LK+   P  I+ Y
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLE-----YLKQLGVPHVIN-Y 172

Query: 74  FEN---------VGGKMLDAVLLNM 89
            E           GG+ +D V +N 
Sbjct: 173 VEEDFEEEIMRLTGGRGVDVV-INT 196

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 25/105 (23%)

Query: 11  VCSPKKGEYVYVSAASGAVGQL-VGQFAKLAGCYVVGSAGSKEKEE-------------- 55
             +P+ G  V V+ A+G VG + V   AKL G  VV   G +E+ +              
Sbjct: 142 GQTPEDGP-VLVTGATGGVGSIAVAILAKL-GYTVVALTGKEEQADYLKSLGASEVLDRE 199

Query: 56  ---PDLDAAL-KRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
               +    L K  +   ID     VGG +L  +L   +  G +A
Sbjct: 200 DLLDESKKPLLKARWAGAID----TVGGDVLANLLKQTKYGGVVA 240

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 9   ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVV----------GSAGSKEKEEPDL 58
           +    P+ GE V V    G VG L  Q AK AG   V            A +    +P  
Sbjct: 90  VRDAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA 148

Query: 59  DAALKRWFPQGIDIYFENVG-GKMLDAVLLNMRLRGRIAVSS 99
                    +G D+  E  G    L+  L  +R RGR+ +  
Sbjct: 149 ADTADEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVG 190

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE 55
           + GE V + AA+G VGQ   Q A+  G  V  +AGS EK +
Sbjct: 102 RPGESVLIHAAAGGVGQAAIQLARHLGAEVFATAGSPEKRD 142

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK 51
              KG+ V +   S +VG L  Q AKLAG  V+ +A  K
Sbjct: 151 PASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTASPK 189

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 28/107 (26%)

Query: 12  CSPKKGEYVYVSAASGAVGQL-VGQFAKLAGCYVVGSAGSKEKEE-------------PD 57
            +P+ G  V V+ A+G VG L V   +KL G  VV S G  E+E+              D
Sbjct: 142 LTPEDGP-VLVTGATGGVGSLAVAILSKL-GYEVVASTGKAEEEDYLKELGASEVIDRED 199

Query: 58  LDAALK-----RWFPQG-IDIYFENVGGKMLDAVLLNMRLRGRIAVS 98
           L    K     RW   G +D     VGG  L  VL  ++  G +A  
Sbjct: 200 LSPPGKPLEKERW--AGAVD----TVGGHTLANVLAQLKYGGAVAAC 240

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 7   LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKEE---------- 55
            +  + + + G+ V V +A+G VG   GQ  K      VVG+A S  K E          
Sbjct: 129 ALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALKENGVTHV 187

Query: 56  -----PDLDAALKRWFPQGIDIYFENVGG 79
                 D    +K+  P+G+DI  + +GG
Sbjct: 188 IDYRTQDYVEEVKKISPEGVDIVLDALGG 216

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE 55
           +KGE V + AA+G VGQ   Q A+  G  V  + GS+EK E
Sbjct: 107 QKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKRE 147

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA----LKRWFPQ-- 68
           KKGE V V+ A G VG    Q AK  G  V+    S+ K +     A    +   F +  
Sbjct: 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKYADYVIVGSKFSEEV 220

Query: 69  ----GIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
               G DI  E VG   L+  L ++ + G+I  
Sbjct: 221 KKIGGADIVIETVGTPTLEESLRSLNMGGKIIQ 253

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.96
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.95
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.95
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.93
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.93
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.92
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.92
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.91
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.91
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.91
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.9
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.9
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.9
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.89
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.88
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.88
PLN02827	378	Alcohol dehydrogenase-like	99.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.88
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.88
PLN02740	381	Alcohol dehydrogenase-like	99.87
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.87
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.87
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.87
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.87
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.87
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.87
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.87
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.86
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.86
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.86
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.85
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.85
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.85
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.85
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.85
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.84
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.84
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.84
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.84
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.83
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.83
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.83
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.83
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.83
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.83
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.82
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.82
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.82
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.82
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.81
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.81
PTZ00354	334	alcohol dehydrogenase; Provisional	99.81
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.8
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.8
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.79
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.79
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.79
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.79
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.79
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.79
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.79
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.78
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.78
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.78
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.78
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.78
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.78
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.78
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.78
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.78
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.77
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.77
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.77
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.77
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.77
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.77
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.77
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.77
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.77
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.76
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.76
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.76
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.76
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.76
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.76
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.76
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.75
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.75
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.75
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.75
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.75
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.75
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.74
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.74
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.74
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.74
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.74
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.73
PRK10083	339	putative oxidoreductase; Provisional	99.73
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.72
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.72
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.72
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.72
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.72
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.72
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.71
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.71
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.71
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.7
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.69
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.69
PLN02702	364	L-idonate 5-dehydrogenase	99.68
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.68
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.67
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.67
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.67
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.67
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.66
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.65
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.65
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.64
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.63
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.44
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.3
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.23
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.56
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.42
PLN02494	477	adenosylhomocysteinase	98.38
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.31
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.29
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.2
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.1
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.07
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.0
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.99
PRK05993	277	short chain dehydrogenase; Provisional	97.98
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.96
PRK08324	681	short chain dehydrogenase; Validated	97.93
PRK12742	237	oxidoreductase; Provisional	97.92
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.87
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.83
PRK06182	273	short chain dehydrogenase; Validated	97.83
PRK05693	274	short chain dehydrogenase; Provisional	97.81
PRK07806	248	short chain dehydrogenase; Provisional	97.8
PRK08265	261	short chain dehydrogenase; Provisional	97.76
PRK07109	334	short chain dehydrogenase; Provisional	97.73
PRK06128	300	oxidoreductase; Provisional	97.7
PRK12939	250	short chain dehydrogenase; Provisional	97.68
PRK08339	263	short chain dehydrogenase; Provisional	97.65
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.65
TIGR00438	188	rrmJ cell division protein FtsJ.	97.62
PRK06398	258	aldose dehydrogenase; Validated	97.61
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.61
PRK05872	296	short chain dehydrogenase; Provisional	97.59
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.59
PRK06179	270	short chain dehydrogenase; Provisional	97.56
PRK06949	258	short chain dehydrogenase; Provisional	97.56
PRK06139	330	short chain dehydrogenase; Provisional	97.55
PRK07985	294	oxidoreductase; Provisional	97.55
PRK06057	255	short chain dehydrogenase; Provisional	97.54
PRK06523	260	short chain dehydrogenase; Provisional	97.54
PRK12828	239	short chain dehydrogenase; Provisional	97.53
PRK08177	225	short chain dehydrogenase; Provisional	97.53
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.52
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.52
KOG0725	270	consensus Reductases with broad range of substrate	97.51
PRK07062	265	short chain dehydrogenase; Provisional	97.5
PRK07814	263	short chain dehydrogenase; Provisional	97.5
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.49
PRK05866	293	short chain dehydrogenase; Provisional	97.48
PRK07577	234	short chain dehydrogenase; Provisional	97.48
PRK06701	290	short chain dehydrogenase; Provisional	97.48
PRK12937	245	short chain dehydrogenase; Provisional	97.47
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.47
PRK07856	252	short chain dehydrogenase; Provisional	97.46
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.46
PRK06196	315	oxidoreductase; Provisional	97.45
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.45
PRK07576	264	short chain dehydrogenase; Provisional	97.45
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.45
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.44
PRK05867	253	short chain dehydrogenase; Provisional	97.44
PRK06484	520	short chain dehydrogenase; Validated	97.44
PLN02780	320	ketoreductase/ oxidoreductase	97.43
PRK08703	239	short chain dehydrogenase; Provisional	97.43
PRK06180	277	short chain dehydrogenase; Provisional	97.42
PRK07825	273	short chain dehydrogenase; Provisional	97.42
PRK06114	254	short chain dehydrogenase; Provisional	97.41
PRK07060	245	short chain dehydrogenase; Provisional	97.41
PRK07478	254	short chain dehydrogenase; Provisional	97.4
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.39
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.39
PRK05854	313	short chain dehydrogenase; Provisional	97.39
PRK06841	255	short chain dehydrogenase; Provisional	97.37
PRK09291	257	short chain dehydrogenase; Provisional	97.37
PRK06194	287	hypothetical protein; Provisional	97.37
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK07832	272	short chain dehydrogenase; Provisional	97.36
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.36
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.35
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.35
PRK06172	253	short chain dehydrogenase; Provisional	97.35
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.35
PRK12829	264	short chain dehydrogenase; Provisional	97.35
PRK07677	252	short chain dehydrogenase; Provisional	97.34
PRK06500	249	short chain dehydrogenase; Provisional	97.34
PRK08643	256	acetoin reductase; Validated	97.33
PRK07890	258	short chain dehydrogenase; Provisional	97.33
PRK06483	236	dihydromonapterin reductase; Provisional	97.32
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.32
PRK08862	227	short chain dehydrogenase; Provisional	97.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.31
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.31
PRK07904	253	short chain dehydrogenase; Provisional	97.31
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.31
PRK06197	306	short chain dehydrogenase; Provisional	97.3
PRK12747	252	short chain dehydrogenase; Provisional	97.29
PRK06181	263	short chain dehydrogenase; Provisional	97.29
PRK08628	258	short chain dehydrogenase; Provisional	97.29
PRK07831	262	short chain dehydrogenase; Provisional	97.29
PRK07774	250	short chain dehydrogenase; Provisional	97.29
PRK05876	275	short chain dehydrogenase; Provisional	97.28
PRK06914	280	short chain dehydrogenase; Provisional	97.28
PRK08589	272	short chain dehydrogenase; Validated	97.28
COG2910	211	Putative NADH-flavin reductase [General function p	97.27
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.27
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.27
PRK07063	260	short chain dehydrogenase; Provisional	97.27
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.26
PRK08017	256	oxidoreductase; Provisional	97.26
PRK05717	255	oxidoreductase; Validated	97.26
PRK07035	252	short chain dehydrogenase; Provisional	97.26
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.26
PRK12743	256	oxidoreductase; Provisional	97.24
PRK07326	237	short chain dehydrogenase; Provisional	97.24
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.24
PLN02253	280	xanthoxin dehydrogenase	97.23
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.23
PRK06125	259	short chain dehydrogenase; Provisional	97.23
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.23
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.22
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.22
PRK06138	252	short chain dehydrogenase; Provisional	97.21
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.21
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.19
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.18
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.18
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.18
PRK07454	241	short chain dehydrogenase; Provisional	97.18
PRK09186	256	flagellin modification protein A; Provisional	97.17
PRK07578	199	short chain dehydrogenase; Provisional	97.16
PRK07067	257	sorbitol dehydrogenase; Provisional	97.16
PRK05875	276	short chain dehydrogenase; Provisional	97.14
PRK07791	286	short chain dehydrogenase; Provisional	97.14
PRK09072	263	short chain dehydrogenase; Provisional	97.14
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.14
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	97.13
PRK07024	257	short chain dehydrogenase; Provisional	97.12
PRK08267	260	short chain dehydrogenase; Provisional	97.12
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.12
PRK09242	257	tropinone reductase; Provisional	97.12
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.12
PRK07074	257	short chain dehydrogenase; Provisional	97.11
PRK09135	249	pteridine reductase; Provisional	97.11
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.11
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.1
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.1
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.1
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.09
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.09
PRK08251	248	short chain dehydrogenase; Provisional	97.08
PRK06198	260	short chain dehydrogenase; Provisional	97.08
PRK08263	275	short chain dehydrogenase; Provisional	97.08
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.07
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.07
PRK08226	263	short chain dehydrogenase; Provisional	97.07
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.06
PRK06482	276	short chain dehydrogenase; Provisional	97.05
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.05
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.04
PRK06720	169	hypothetical protein; Provisional	97.04
PRK08278	273	short chain dehydrogenase; Provisional	97.04
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.04
PRK08264	238	short chain dehydrogenase; Validated	97.03
PRK06953	222	short chain dehydrogenase; Provisional	97.03
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.02
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.02
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.01
PRK06484	520	short chain dehydrogenase; Validated	97.01
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.01
PRK10538	248	malonic semialdehyde reductase; Provisional	96.99
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.98
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.98
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.97
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.97
PRK08303	305	short chain dehydrogenase; Provisional	96.97
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.96
PRK05884	223	short chain dehydrogenase; Provisional	96.96
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.94
PRK09134	258	short chain dehydrogenase; Provisional	96.93
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.93
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.93
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.92
PRK05650	270	short chain dehydrogenase; Provisional	96.92
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.91
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.89
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.89
PRK07775	274	short chain dehydrogenase; Provisional	96.89
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.89
PRK07102	243	short chain dehydrogenase; Provisional	96.88
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.88
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.87
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.87
PRK12744	257	short chain dehydrogenase; Provisional	96.87
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.87
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.87
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.87
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.85
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.85
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.85
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.85
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.84
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.84
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.83
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.83
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.83
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.83
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.82
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.81
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.81
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.8
CHL00194	317	ycf39 Ycf39; Provisional	96.8
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.8
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.78
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.77
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.76
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.76
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.76
PRK12827	249	short chain dehydrogenase; Provisional	96.75
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.75
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.74
PRK06487	317	glycerate dehydrogenase; Provisional	96.73
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.72
PRK06849	389	hypothetical protein; Provisional	96.72
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.7
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.7
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.69
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.69
PRK07023	243	short chain dehydrogenase; Provisional	96.69
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.68
PRK12746	254	short chain dehydrogenase; Provisional	96.68
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.68
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PRK06101	240	short chain dehydrogenase; Provisional	96.65
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.64
PRK06932	314	glycerate dehydrogenase; Provisional	96.64
PRK07201	657	short chain dehydrogenase; Provisional	96.64
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.63
PRK05855	582	short chain dehydrogenase; Validated	96.62
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.6
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.59
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.59
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.58
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.58
PRK06123	248	short chain dehydrogenase; Provisional	96.57
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.57
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.53
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.52
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.52
PLN03209	576	translocon at the inner envelope of chloroplast su	96.51
PRK06940	275	short chain dehydrogenase; Provisional	96.49
COG4122	219	Predicted O-methyltransferase [General function pr	96.49
PLN00016	378	RNA-binding protein; Provisional	96.46
PRK12367	245	short chain dehydrogenase; Provisional	96.45
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.45
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.44
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.44
PLN02928	347	oxidoreductase family protein	96.43
PRK13243	333	glyoxylate reductase; Reviewed	96.42
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.41
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.4
PRK06436	303	glycerate dehydrogenase; Provisional	96.4
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.37
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	96.36
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.34
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.33
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.29
PRK04148	134	hypothetical protein; Provisional	96.29
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.27
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.25
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.24
PRK05599	246	hypothetical protein; Provisional	96.24
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.23
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.22
PRK07069	251	short chain dehydrogenase; Validated	96.2
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.19
PLN02240	352	UDP-glucose 4-epimerase	96.17
KOG1208	314	consensus Dehydrogenases with different specificit	96.17
PRK12480	330	D-lactate dehydrogenase; Provisional	96.16
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.15
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.14
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.14
PLN03075	296	nicotianamine synthase; Provisional	96.12
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.12
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.11
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.1
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.09
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.08
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.08
PRK11207	197	tellurite resistance protein TehB; Provisional	96.07
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.05
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.05
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.04
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	96.04
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.04
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	96.04
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.02
PLN02583	297	cinnamoyl-CoA reductase	96.0
PRK14967	223	putative methyltransferase; Provisional	95.96
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	95.95
PLN02476	278	O-methyltransferase	95.95
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.95
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.95
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.94
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.92
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	95.92
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.91
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.91
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.91
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.87
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.87
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.87
PRK08219	227	short chain dehydrogenase; Provisional	95.87
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.87
PRK08328	231	hypothetical protein; Provisional	95.86
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.85
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.83
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.83
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.82
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.8
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.8
PRK09009	235	C factor cell-cell signaling protein; Provisional	95.79
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.79
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.75
PLN02653	340	GDP-mannose 4,6-dehydratase	95.75
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.75
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.74
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.74
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.74
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.72
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.72
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.72
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.72
PLN03139	386	formate dehydrogenase; Provisional	95.71
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	95.71
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.7
PRK07041	230	short chain dehydrogenase; Provisional	95.69
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.68
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.68
PLN00015	308	protochlorophyllide reductase	95.68
PRK14030	445	glutamate dehydrogenase; Provisional	95.68
PRK08317	241	hypothetical protein; Provisional	95.66
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	95.65
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.65
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.64
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.63
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.63
PRK07574	385	formate dehydrogenase; Provisional	95.63
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.63
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.62
PRK06924	251	short chain dehydrogenase; Provisional	95.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.59
PLN02778	298	3,5-epimerase/4-reductase	95.59
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.58
PRK08655	437	prephenate dehydrogenase; Provisional	95.56
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.53
PLN02166	436	dTDP-glucose 4,6-dehydratase	95.52
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.51
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.51
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.5
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.5
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	95.49
PRK08223	287	hypothetical protein; Validated	95.49
PRK10675	338	UDP-galactose-4-epimerase; Provisional	95.48
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	95.46
PLN02366	308	spermidine synthase	95.43
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	95.42
PRK10637	457	cysG siroheme synthase; Provisional	95.41
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.4
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.39
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.39
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.37
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.37

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=166.25  Aligned_cols=171  Identities=22%  Similarity=0.254  Sum_probs=147.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||..+.+-.++++|++||++.|+|++|+++.|++|..|+.+|++++++++               +.+|+.+++.+++
T Consensus       132 lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiT  211 (336)
T KOG1197|consen  132 LTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKIT  211 (336)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhcc
Confidence            6899999888899999999999999999999999999999999999999887               5689999999999


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch---HHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY---YHLYLKFLE  142 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  142 (180)
                      ++ |+|+++|++|.+++...+.+|++.|+++.+|+..+     ..+++.+..+..+.+.+.......+   .........
T Consensus       212 ngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asg-----l~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~  286 (336)
T KOG1197|consen  212 NGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASG-----LIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVA  286 (336)
T ss_pred             CCCCceeeeccccchhhHHHHHHhccCceEEEeccccC-----CCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHH
Confidence            88 99999999999999999999999999999998774     3445556666666666554443332   334445677


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+|.+++.+.++|||+++.+|+..++++.
T Consensus       287 rl~alvnsg~lk~~I~~~ypls~vadA~~diesrk  321 (336)
T KOG1197|consen  287 RLFALVNSGHLKIHIDHVYPLSKVADAHADIESRK  321 (336)
T ss_pred             HHHHHhhcCccceeeeeecchHHHHHHHHHHHhhh
Confidence            88899999999999999999999999999999885

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.95  E-value=3.1e-26  Score=171.20  Aligned_cols=166  Identities=28%  Similarity=0.336  Sum_probs=139.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++.+..++++|++|||+||+|+||.+++|+||.+|++++++++++++               .++++.+.+++.+
T Consensus       128 ~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t  207 (326)
T COG0604         128 LTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELT  207 (326)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHc
Confidence            6999999998999999999999999999999999999999876666666554               4566999999999


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      ++ ++|+++|++|++++...+.+|+++|+++.++...+    ......+...++.+.++..+...... ++...+.++++
T Consensus       208 ~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l  283 (326)
T COG0604         208 GGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSG----GPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAEL  283 (326)
T ss_pred             CCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCC----CCccccCHHHHhhccEEEEEecceecchHHHHHHHHHH
Confidence            98 99999999999999999999999999999998763    12233446667778888887777642 24556789999


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHH
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCY  171 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~  171 (180)
                      .+++++|.++|.++.+||+++..++..
T Consensus       284 ~~~~~~g~l~~~i~~~~~l~e~~~a~a  310 (326)
T COG0604         284 FDLLASGKLKPVIDRVYPLAEAPAAAA  310 (326)
T ss_pred             HHHHHcCCCcceeccEechhhhHHHHH
Confidence            999999999999999999999554444

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.95  E-value=2.7e-26  Score=163.82  Aligned_cols=178  Identities=45%  Similarity=0.656  Sum_probs=157.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~   65 (180)
                      +|||.+|.+.+++++|++++|.+|+|++|..+.|+||..|++|+.++.++++                +.+++.+.+.+.
T Consensus       136 ~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a  215 (340)
T COG2130         136 LTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEA  215 (340)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999997                567999999999


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-CccccchHHHhhcCcEEEeeecc-chHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-PEGVHNLEQLIGKRIRLEGFLAG-DYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  143 (180)
                      ++.++|+.||++|++.++.++..|+..+|++.+|....++... +..+.+...++.+.+++.|+-.. .+.....+..++
T Consensus       216 ~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~  295 (340)
T COG2130         216 CPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRE  295 (340)
T ss_pred             CCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999998886553 22344556677788999999984 445556689999


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhhcc
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKK  179 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~~~  179 (180)
                      +.+|+.+|+|+-..+.+-.|+.+++||.-|-++.+.
T Consensus       296 l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~  331 (340)
T COG2130         296 LGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNF  331 (340)
T ss_pred             HHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCcc
Confidence            999999999999987777899999999988887653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.95  E-value=8.6e-26  Score=171.00  Aligned_cols=176  Identities=60%  Similarity=0.953  Sum_probs=141.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------Cc-chHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EE-PDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~-~~~~~~~~~   64 (180)
                      +|||+++.+..++++|++|+|+|++|++|++++|+||.+|++|+++++++++                ++ .++.+.+++
T Consensus       144 ~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~  223 (348)
T PLN03154        144 FTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKR  223 (348)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHH
Confidence            6889999888899999999999999999999999999999999998877543                11 256666777


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .+++++|++|||+|+..+..++.+++++|+++.+|...+..........++..++.+++++.|+....+.....+.++++
T Consensus       224 ~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~  303 (348)
T PLN03154        224 YFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENV  303 (348)
T ss_pred             HCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHH
Confidence            76668999999999888999999999999999998754321100001224566778889999887654433345678889


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++++|++++.++.+++|+++++|++.++++.
T Consensus       304 ~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~  336 (348)
T PLN03154        304 SRYYKQGKIVYIEDMSEGLESAPAALVGLFSGK  336 (348)
T ss_pred             HHHHHCCCccCceecccCHHHHHHHHHHHHcCC
Confidence            999999999998888999999999999998874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.93  E-value=9.1e-25  Score=160.95  Aligned_cols=161  Identities=24%  Similarity=0.267  Sum_probs=137.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      .|+|+++ +..+++||++|+|+| .|++|++++|+||++|++|+++++++++               .+++..+.+++. 
T Consensus       153 iT~y~al-k~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~-  229 (339)
T COG1064         153 ITTYRAL-KKANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEI-  229 (339)
T ss_pred             eeEeeeh-hhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhh-
Confidence            4788999 669999999999999 6799999999999999999999999886               223444444443 


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                         +|+++||++..+++..++.|+++|+++.+|....    .+....+...++.+++++.|+...+     +..++++++
T Consensus       230 ---~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~----~~~~~~~~~~li~~~~~i~GS~~g~-----~~d~~e~l~  297 (339)
T COG1064         230 ---ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGG----GPIPLLPAFLLILKEISIVGSLVGT-----RADLEEALD  297 (339)
T ss_pred             ---CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCC----cccCCCCHHHhhhcCeEEEEEecCC-----HHHHHHHHH
Confidence               9999999995599999999999999999998741    1233456677899999999999987     566889999


Q ss_pred             HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          147 AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       147 ~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +..+|+++|.+.+.++++++++|+++|+++.
T Consensus       298 f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~  328 (339)
T COG1064         298 FAAEGKIKPEILETIPLDEINEAYERMEKGK  328 (339)
T ss_pred             HHHhCCceeeEEeeECHHHHHHHHHHHHcCC
Confidence            9999999999978899999999999999875

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.93  E-value=8e-24  Score=159.02  Aligned_cols=176  Identities=40%  Similarity=0.638  Sum_probs=139.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++++|+||+|++|++++|+|+.+|++|+++++++++               .++++.+.+++.+
T Consensus       129 ~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~  208 (329)
T cd08294         129 LTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAA  208 (329)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHC
Confidence            6899999888999999999999999999999999999999999999887654               3356777777777


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCc-cccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE-GVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      ++++|++|||+|++.+...+++++++|+++.+|........... .......+..+++++.++....+.....+.++++.
T Consensus       209 ~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  288 (329)
T cd08294         209 PDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLL  288 (329)
T ss_pred             CCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHH
Confidence            66899999999998889999999999999999864322111111 12233456777888888765443233456788899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|.+++....+++++++++|++.++++.
T Consensus       289 ~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~  320 (329)
T cd08294         289 KWIKEGKLKYREHVTEGFENMPQAFIGMLKGE  320 (329)
T ss_pred             HHHHCCCCcCCcccccCHHHHHHHHHHHHcCC
Confidence            99999999987667799999999999988764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.93  E-value=4e-24  Score=152.39  Aligned_cols=178  Identities=67%  Similarity=1.024  Sum_probs=158.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~   64 (180)
                      +|||..+.+.+.++.|++++|.||+|++|+++-|+||.+|++|++++.++++                 ++.+..+.+++
T Consensus       139 lTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r  218 (343)
T KOG1196|consen  139 LTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKR  218 (343)
T ss_pred             hHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999997                 33477888888


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      -.+.++|+.||.+|+..++..+..++..||++.+|....++...+..-.+....+.+++.+.|+..........+.++.+
T Consensus       219 ~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l  298 (343)
T KOG1196|consen  219 CFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFL  298 (343)
T ss_pred             hCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHH
Confidence            88889999999999999999999999999999999988887666655566778889999999988877766678899999


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhhcc
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRVKK  179 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~~~  179 (180)
                      ..++.+|+|+-..+-.-.|+..++|+.-|-+|++.
T Consensus       299 ~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNv  333 (343)
T KOG1196|consen  299 LPYIKEGKITYVEDIADGLENGPSALVGLFHGKNV  333 (343)
T ss_pred             HHHHhcCceEEehhHHHHHhccHHHHHHHhccCcc
Confidence            99999999998876667799999999988887643

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.92  E-value=1.3e-23  Score=158.55  Aligned_cols=176  Identities=66%  Similarity=0.998  Sum_probs=137.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------C-cchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------E-EPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~-~~~~~~~~~~   64 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+||.+|++|+++++++++                . +.++.+.+++
T Consensus       137 ~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~  216 (338)
T cd08295         137 LTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKR  216 (338)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHH
Confidence            6899999888899999999999999999999999999999999998877543                1 1255666676


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .+++++|++|||+|+..+..++.+++++|+++.+|..............+....+.+++++.++....+.....+.++++
T Consensus       217 ~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  296 (338)
T cd08295         217 YFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEM  296 (338)
T ss_pred             hCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHH
Confidence            66568999999999988999999999999999998654321100001123355667778888766544333345678889


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|.+++.+..+|+++++++|++.++++.
T Consensus       297 ~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  329 (338)
T cd08295         297 SGYIKEGKLKYVEDIADGLESAPEAFVGLFTGS  329 (338)
T ss_pred             HHHHHCCCeEceeecccCHHHHHHHHHHHhcCC
Confidence            999999999987777899999999999988763

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.92  E-value=1.1e-23  Score=158.30  Aligned_cols=176  Identities=39%  Similarity=0.577  Sum_probs=135.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+||..|++|+++++++++               ++ ..+.+.++..
T Consensus       124 ~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       124 LTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh
Confidence            6899999888999999999999999999999999999999999999887654               12 2344455555


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCcc-ccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEG-VHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      +++++|++|||+|++.+...+++++++|+++.+|............ ......++.+++++.++....+ .....+.+++
T Consensus       204 ~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  283 (325)
T TIGR02825       204 SPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKE  283 (325)
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHH
Confidence            5558999999999988899999999999999998654321100011 1123445667788887765332 2223456888


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|++++.+..+++++++++|++.++++.
T Consensus       284 ~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  317 (325)
T TIGR02825       284 LLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGE  317 (325)
T ss_pred             HHHHHHCCCcccceeccccHHHHHHHHHHHhcCC
Confidence            9999999999988778899999999999988764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.91  E-value=3e-23  Score=150.76  Aligned_cols=168  Identities=20%  Similarity=0.134  Sum_probs=144.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccc-hHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEP-DLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~-~~~~~~~~   64 (180)
                      +|.+-+..+..++++|+++.|+| .|++|++++|-|+..|+ +||+++..+++               ++. ++.+.+++
T Consensus       171 ~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~  249 (366)
T COG1062         171 TTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVE  249 (366)
T ss_pred             ccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHH
Confidence            46677788999999999999999 99999999999999999 89999999887               223 68889999


Q ss_pred             HcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .|++++|++|||+|+. .+..++.++.++|+.+.+|....    ......++.+++.. .+++|+.+....  .+.++..
T Consensus       250 ~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~----~~~i~~~~~~lv~g-r~~~Gs~~G~~~--p~~diP~  322 (366)
T COG1062         250 LTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGA----GQEISTRPFQLVTG-RVWKGSAFGGAR--PRSDIPR  322 (366)
T ss_pred             hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCC----CceeecChHHeecc-ceEEEEeecCCc--cccchhH
Confidence            9999999999999976 89999999999999999998764    22334566667766 889999987642  3566889


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|+|..  +++++++|+|++|||++|++++
T Consensus       323 lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~  358 (366)
T COG1062         323 LVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGK  358 (366)
T ss_pred             HHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCc
Confidence            999999999875  7899999999999999999885

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.91  E-value=1.2e-22  Score=155.10  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=136.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++|+|.| +|++|++++|+||.+|+ +|+++++++++               .++++.+.+++.
T Consensus       177 ~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~  255 (371)
T cd08281         177 LTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL  255 (371)
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH
Confidence            57888887888899999999998 69999999999999999 69888877655               234566777777


Q ss_pred             cCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +++++|++|||+|.. .+..++++++++|+++.+|.....    ....++...++.+++++.++....+.  .++.+.++
T Consensus       256 ~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~  329 (371)
T cd08281         256 TGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE----ARLSVPALSLVAEERTLKGSYMGSCV--PRRDIPRY  329 (371)
T ss_pred             hCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCC----ceeeecHHHHhhcCCEEEEEecCCCC--hHHHHHHH
Confidence            766899999999965 888899999999999999865421    12244566778899999998765431  13457788


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|++++  +++++|+++++++||+.++++.
T Consensus       330 ~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  364 (371)
T cd08281         330 LALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGE  364 (371)
T ss_pred             HHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCC
Confidence            99999999975  6789999999999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.91  E-value=4.2e-23  Score=154.78  Aligned_cols=172  Identities=23%  Similarity=0.278  Sum_probs=128.5

Q ss_pred             chHHHHHHHHc------CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchHHH
Q 041355            2 LIVGNLIILVC------SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLDA   60 (180)
Q Consensus         2 l~a~~~l~~~~------~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~~~   60 (180)
                      ++||.++....      ++++|++|||+||+|+||++++|+||++|+ .|+++++.+..              +++++.+
T Consensus       137 ~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e  216 (347)
T KOG1198|consen  137 LTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVE  216 (347)
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHH
Confidence            68999999999      899999999999999999999999999995 66666666554              6678899


Q ss_pred             HHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEE-----Eeeeccc-hH
Q 041355           61 ALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRL-----EGFLAGD-YY  134 (180)
Q Consensus        61 ~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~  134 (180)
                      .+++.+.++||++|||+|+......+.+++.+|+...++............  ..++ ..+.+++     .+..... ..
T Consensus       217 ~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~  293 (347)
T KOG1198|consen  217 LIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGDELANYKLD--DLWQ-SANGIKLYSLGLKGVNYRWLYF  293 (347)
T ss_pred             HHHhhcCCCccEEEECCCCCccccchhhhccCCceEEEEeccccccccccc--cchh-hhhhhhheeeeeeccceeeeee
Confidence            999988559999999999988888888998888766665554322111111  1111 1111111     1111111 12


Q ss_pred             HHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          135 HLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ....+.++.+.+++++|+++|.+.++||++++.+|++.+.++
T Consensus       294 ~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~  335 (347)
T KOG1198|consen  294 VPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKS  335 (347)
T ss_pred             cCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhc
Confidence            234677899999999999999999999999999999988774

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.90  E-value=2.7e-22  Score=152.55  Aligned_cols=168  Identities=17%  Similarity=0.181  Sum_probs=133.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+...+++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .++++.+.+++.
T Consensus       162 ~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~  240 (358)
T TIGR03451       162 MAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL  240 (358)
T ss_pred             hhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH
Confidence            46677877788899999999998 69999999999999999 58888877654               234566778877


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|++|||+|++ .+..++.+++++|+++.+|.....    ....+++..++.+++++.+.+.....  ..+.+++
T Consensus       241 ~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~  314 (358)
T TIGR03451       241 TGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPD----MTLELPLLDVFGRGGALKSSWYGDCL--PERDFPM  314 (358)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC----ceeeccHHHHhhcCCEEEEeecCCCC--cHHHHHH
Confidence            776 899999999975 888899999999999999875321    11234555677888888887643211  2345788


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++.+|.+++  +++++||++++++|++.++++
T Consensus       315 ~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~  349 (358)
T TIGR03451       315 LVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAG  349 (358)
T ss_pred             HHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCC
Confidence            999999999975  688999999999999988776

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.90  E-value=6.3e-23  Score=167.06  Aligned_cols=172  Identities=19%  Similarity=0.224  Sum_probs=146.0

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHH
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAA   61 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~   61 (180)
                      +.||||+++.++..++|++|||++|+|+||++||.+|.++|++|+.++.+.++                   ++.++...
T Consensus      1537 YsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~ 1616 (2376)
T KOG1202|consen 1537 YSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQH 1616 (2376)
T ss_pred             eeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHH
Confidence            35899999999999999999999999999999999999999999999999887                   56788899


Q ss_pred             HHhHcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHH----
Q 041355           62 LKRWFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHL----  136 (180)
Q Consensus        62 ~~~~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  136 (180)
                      +++.|+| |+|+++++...+.++..++||+-+||+..+|...-.+.+    ++. ...+.++.+++|...+...+-    
T Consensus      1617 vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSqNs----pLG-MavfLkNvsfHGiLLDsvmege~e~ 1691 (2376)
T KOG1202|consen 1617 VLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQNS----PLG-MAVFLKNVSFHGILLDSVMEGEEEM 1691 (2376)
T ss_pred             HHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceecccCC----cch-hhhhhcccceeeeehhhhhcCcHHH
Confidence            9999998 999999999999999999999999999999865432211    222 467889999999998876322    


Q ss_pred             HHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          137 YLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       137 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++.+..+.+-+.+|.++|+.+++|+-.++++||+.|.+|+
T Consensus      1692 ~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGK 1732 (2376)
T KOG1202|consen 1692 WREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGK 1732 (2376)
T ss_pred             HHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccC
Confidence            23344444555666788999999999999999999999885

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.90  E-value=7.3e-22  Score=149.40  Aligned_cols=176  Identities=32%  Similarity=0.465  Sum_probs=129.8

Q ss_pred             chHHHHHHHHcCCCCC--CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHHHHH
Q 041355            2 LIVGNLIILVCSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g--~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~~~~   62 (180)
                      ++||+++.+..++++|  ++|||+||+|++|++++|+||.+|+ +|+++++++++                .++++.+.+
T Consensus       138 ~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i  217 (345)
T cd08293         138 LTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERL  217 (345)
T ss_pred             HHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence            5788998888888877  9999999999999999999999999 89999887654                234667777


Q ss_pred             HhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCc-cccc--hHHH-hhcCcEEEeeeccchHHHHH
Q 041355           63 KRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE-GVHN--LEQL-IGKRIRLEGFLAGDYYHLYL  138 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~  138 (180)
                      ++.+++++|++|||+|+..+..++.+++++|+++.+|........... ....  .... ....+++.++..........
T Consensus       218 ~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (345)
T cd08293         218 RELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFE  297 (345)
T ss_pred             HHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHH
Confidence            777766899999999988888999999999999999854321100000 1111  1111 22344444433222233345


Q ss_pred             HHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          139 KFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++++.+++.+|.+++.+..+++++++++|++.++++.
T Consensus       298 ~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~  336 (345)
T cd08293         298 EAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGG  336 (345)
T ss_pred             HHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCC
Confidence            678889999999999987666679999999999988763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=1.5e-21  Score=140.31  Aligned_cols=168  Identities=18%  Similarity=0.137  Sum_probs=140.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-------------Ccc----hHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-------------EEP----DLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-------------~~~----~~~~~~~   63 (180)
                      .|+|-+..+.+++++|+++.|+| .|+||++++|-||+.|+ ++|+++-++++             ++.    ...+.++
T Consensus       178 sTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~  256 (375)
T KOG0022|consen  178 STGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVII  256 (375)
T ss_pred             cccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHH
Confidence            46778888999999999999999 99999999999999999 99999999887             222    3567789


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++|++++|+.|||+|+. ++..++.+.+.+ |+.+.+|....    .......++.++. ..++.|..+..++  .+..+
T Consensus       257 EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~----~~~i~~~p~~l~~-GR~~~Gs~FGG~K--~~~~i  329 (375)
T KOG0022|consen  257 EMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAA----GQEISTRPFQLVT-GRTWKGSAFGGFK--SKSDI  329 (375)
T ss_pred             HHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCC----Ccccccchhhhcc-ccEEEEEeccccc--chhhh
Confidence            99999999999999987 888999999888 99999998764    2334555555554 6788898888863  25667


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ..+++.+.+++++  ..+++.+||+++++||++|.+++
T Consensus       330 P~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gk  367 (375)
T KOG0022|consen  330 PKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGK  367 (375)
T ss_pred             hHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCc
Confidence            7888888888775  58999999999999999999875

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.88  E-value=4.4e-21  Score=144.07  Aligned_cols=169  Identities=20%  Similarity=0.258  Sum_probs=130.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEe-cCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVS-AASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~-Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||..+ +..++ ++++++|+ ||+|++|++++|+||.+|++|+++++++++               ..+++.+.+++.
T Consensus       130 ~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~  207 (324)
T cd08291         130 LTALGML-ETARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKEL  207 (324)
T ss_pred             HHHHHHH-Hhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHH
Confidence            4565443 55555 55566665 889999999999999999999998887654               335677788888


Q ss_pred             cCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchH-HHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  143 (180)
                      +++ ++|++|||+|+......+.+++++|+++.+|......    ...++....+.+++++.++....+. ....+.+++
T Consensus       208 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (324)
T cd08291         208 IAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKL----DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKK  283 (324)
T ss_pred             hCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCC----cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHH
Confidence            776 8999999999888888899999999999998654321    1124455677889999888765431 112456788


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++. +.+++.++++|+++++++|++.++++.
T Consensus       284 ~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~  316 (324)
T cd08291         284 LKKLVK-TELKTTFASRYPLALTLEAIAFYSKNM  316 (324)
T ss_pred             HHHHHh-CccccceeeEEcHHHHHHHHHHHHhCC
Confidence            888888 999999999999999999999998864

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=2.3e-21  Score=139.97  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=135.6

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------C---cchHHH
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------E---EPDLDA   60 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~---~~~~~~   60 (180)
                      |.++||+. +++++++|+++||+| +|++|+++...||.+|+ +|++++-.+++                .   .+++.+
T Consensus       155 LsV~~HAc-r~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~  232 (354)
T KOG0024|consen  155 LSVGVHAC-RRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAE  232 (354)
T ss_pred             hhhhhhhh-hhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHH
Confidence            46789999 889999999999999 89999999999999999 89998888876                1   133444


Q ss_pred             HHHhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHH
Q 041355           61 ALKRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYL  138 (180)
Q Consensus        61 ~~~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (180)
                      .+.+..+. .+|+.|||+|.+ +++.++..++.+|+++..+...      ....+++.....+++++.|..-..     +
T Consensus       233 ~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~------~~~~fpi~~v~~kE~~~~g~fry~-----~  301 (354)
T KOG0024|consen  233 LVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA------EEIQFPIIDVALKEVDLRGSFRYC-----N  301 (354)
T ss_pred             HHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC------CccccChhhhhhheeeeeeeeeec-----c
Confidence            45544443 699999999987 8999999999999987776543      244667788899999998877633     4


Q ss_pred             HHHHHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          139 KFLELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       139 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ..+..+++++.+|++.  +++++.|++++..+||+.+..+.
T Consensus       302 ~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~  342 (354)
T KOG0024|consen  302 GDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGE  342 (354)
T ss_pred             ccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCc
Confidence            5788999999999885  58999999999999999887764

>PLN02827 Alcohol dehydrogenase-like

Probab=99.88  E-value=5e-21  Score=146.50  Aligned_cols=167  Identities=20%  Similarity=0.163  Sum_probs=129.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      +++|+++.+..++++|++|+|+| +|++|++++|+||.+|+ .|+++++++++               .+  +++.+.++
T Consensus       179 ~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~  257 (378)
T PLN02827        179 AAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIK  257 (378)
T ss_pred             HhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHH
Confidence            35566666677899999999998 69999999999999999 57777655544               11  24556677


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +.+++++|++|||+|.. .+..++..++++ |+++.+|.....      ..+.. ..++.+++++.|+....+.  ....
T Consensus       258 ~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~------~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~  329 (378)
T PLN02827        258 RMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK------PEVSAHYGLFLSGRTLKGSLFGGWK--PKSD  329 (378)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC------ccccccHHHHhcCceEEeeecCCCc--hhhh
Confidence            77766899999999976 788999999998 999999875421      11222 3567789999988765431  1335


Q ss_pred             HHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++++++.+|++++  +++++|+|+++++|++.++++.
T Consensus       330 ~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~  368 (378)
T PLN02827        330 LPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGK  368 (378)
T ss_pred             HHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCC
Confidence            778999999999998  7899999999999999998753

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.88  E-value=4.1e-21  Score=145.33  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=124.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +.....+|++|+|+| +|++|++++|+||.+|+ +|+++++++++               +++++.+ +.+ 
T Consensus       156 ~~a~~al-~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~-~~~-  231 (343)
T PRK09880        156 AVAIHAA-HQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDH-YKA-  231 (343)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHH-Hhc-
Confidence            5788888 445667899999998 59999999999999999 68888887665               1122222 222 


Q ss_pred             cCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ..+++|++|||+|+. .+..++++++++|+++.+|....      ...+++..++.+++++.++...      .+.++++
T Consensus       232 ~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g~~~~------~~~~~~~  299 (343)
T PRK09880        232 EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA------PPEFPMMTLIVKEISLKGSFRF------TEEFNTA  299 (343)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CCccCHHHHHhCCcEEEEEeec------cccHHHH
Confidence            123699999999975 78899999999999999986432      2345566777889998887642      2357889


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++++.+|++++  +++++|+++++++|++.++++
T Consensus       300 ~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  333 (343)
T PRK09880        300 VSWLANGVINPLPLLSAEYPFTDLEEALIFAGDK  333 (343)
T ss_pred             HHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcC
Confidence            99999999986  678999999999999988765

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.88  E-value=7.2e-21  Score=143.72  Aligned_cols=161  Identities=18%  Similarity=0.129  Sum_probs=128.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +..++++|++|+|+| +|++|++++|+||.+|++ |+++++++++               ++++ .+.+.+.
T Consensus       150 ~ta~~~l-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~-~~~~~~~  226 (339)
T cd08239         150 GTAYHAL-RRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD-VQEIREL  226 (339)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcch-HHHHHHH
Confidence            5789998 567889999999998 699999999999999997 9988877554               2223 5566666


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|++|||+|+. .+...+++++++|+++.+|.....     ... ....++.+++++.+++...     .+.+.+
T Consensus       227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~-~~~~~~~~~~~i~g~~~~~-----~~~~~~  295 (339)
T cd08239         227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL-----TIE-VSNDLIRKQRTLIGSWYFS-----VPDMEE  295 (339)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc-----ccC-cHHHHHhCCCEEEEEecCC-----HHHHHH
Confidence            766 899999999987 557889999999999999875421     111 1235677889999887644     345788


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++.+|.+++  +++++|+++++++|++.++++
T Consensus       296 ~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~  330 (339)
T cd08239         296 CAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQG  330 (339)
T ss_pred             HHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcC
Confidence            999999999874  788999999999999988775

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=99.87  E-value=1.1e-20  Score=144.82  Aligned_cols=167  Identities=19%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       184 ~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~  262 (381)
T PLN02740        184 STGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIR  262 (381)
T ss_pred             hhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHH
Confidence            57888887788999999999999 69999999999999999 69988887665               11  23566677


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|+. .+..++.+++++ |+++.+|.....    ....+....+ .+++++.|+....+..  ...+
T Consensus       263 ~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~----~~~~~~~~~~-~~~~~i~g~~~~~~~~--~~~~  335 (381)
T PLN02740        263 EMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP----KMLPLHPMEL-FDGRSITGSVFGDFKG--KSQL  335 (381)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC----ceecccHHHH-hcCCeEEEEecCCCCc--HHHH
Confidence            77666899999999975 788899999996 999999875421    1122232223 3678888876644321  2457


Q ss_pred             HHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++.++.+++  +++++|+++++++|++.++++
T Consensus       336 ~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~  372 (381)
T PLN02740        336 PNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDG  372 (381)
T ss_pred             HHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCC
Confidence            88999999998865  688999999999999988775

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.87  E-value=5.7e-21  Score=144.74  Aligned_cols=169  Identities=14%  Similarity=0.114  Sum_probs=126.7

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++|+++ +...+++|++|+|+| +|++|++++|+||.+|++ |+++++++++               +..+ .+.+.+.+
T Consensus       148 ~~~~~~-~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~~~~~~  224 (347)
T PRK10309        148 VGLHAF-HLAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMS-APQIQSVL  224 (347)
T ss_pred             HHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccC-HHHHHHHh
Confidence            456665 667889999999997 699999999999999996 6777776544               1112 34566666


Q ss_pred             CC-Ccc-EEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           67 PQ-GID-IYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        67 ~~-~~d-~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .+ ++| ++|||+|+. .+..++++++++|+++.+|.....   ......+...++.+++++.|+.........++.+++
T Consensus       225 ~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  301 (347)
T PRK10309        225 RELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHD---LHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWET  301 (347)
T ss_pred             cCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC---cccChhhhhHHhhcCcEEEEEeccccCCcchhHHHH
Confidence            65 888 999999976 888999999999999999875421   111112234567788999987653211112356788


Q ss_pred             HHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|.++  ++++++|+|+++++|++.++++.
T Consensus       302 ~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  337 (347)
T PRK10309        302 ASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNP  337 (347)
T ss_pred             HHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCC
Confidence            99999999984  67899999999999999988764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=1e-20  Score=143.20  Aligned_cols=168  Identities=21%  Similarity=0.202  Sum_probs=135.4

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccc-hHHHHHH
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEP-DLDAALK   63 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~-~~~~~~~   63 (180)
                      |.+++++........++++++|+| +|++|++++|++|.+|+ +|++++.++++               ..+ +....+.
T Consensus       153 la~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~  231 (350)
T COG1063         153 LATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL  231 (350)
T ss_pred             hhhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHH
Confidence            346777755556666667999999 99999999999999998 78888887776               112 4566777


Q ss_pred             hHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++ ++|++|||+|.. .+..++.+++++|+++.+|.....     ....+...++.+++++.|.....    ....+
T Consensus       232 ~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~-----~~~~~~~~~~~kel~l~gs~~~~----~~~~~  302 (350)
T COG1063         232 ELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGE-----DIPLPAGLVVSKELTLRGSLRPS----GREDF  302 (350)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCc-----cCccCHHHHHhcccEEEeccCCC----CcccH
Confidence            88888 999999999976 789999999999999999987642     11456778999999999984422    13457


Q ss_pred             HHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhhc
Q 041355          142 ELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRVK  178 (180)
Q Consensus       142 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~~  178 (180)
                      +.+++++.+|++.+  ++++.++++++++|++.+.++.+
T Consensus       303 ~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~  341 (350)
T COG1063         303 ERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKE  341 (350)
T ss_pred             HHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCC
Confidence            88999999999987  56899999999999999988653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.87  E-value=2.7e-20  Score=139.54  Aligned_cols=169  Identities=20%  Similarity=0.259  Sum_probs=135.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++ +..++++|++++|+|++|++|++++|+|+.+|++++++++++++               .+.++...+++.+
T Consensus       126 ~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~  204 (324)
T cd08292         126 LSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAA  204 (324)
T ss_pred             HHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHh
Confidence            4677877 55889999999999999999999999999999999988877643               3345667788888


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHLYLKF  140 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  140 (180)
                      ++ ++|++|||+|+.....++++++++|+++.+|....     .....++...+.+++++.++....+     +......
T Consensus       205 ~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (324)
T cd08292         205 GGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSG-----EPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRM  279 (324)
T ss_pred             CCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecCCC-----CCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHH
Confidence            77 89999999998888889999999999999986421     1223455556778899988876432     2234567


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +..+++++.+|.+++.+.++|+++++.+|++.++++
T Consensus       280 ~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~  315 (324)
T cd08292         280 IAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRP  315 (324)
T ss_pred             HHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcC
Confidence            888999999999987667889999999999988764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.87  E-value=1.9e-20  Score=141.99  Aligned_cols=162  Identities=21%  Similarity=0.217  Sum_probs=126.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc---chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE---PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~---~~~~~~~~   63 (180)
                      +++|+++. ...+++|++|+|+|+ |++|++++|+|+.+|++|+++++++++               .+   +++.+.++
T Consensus       153 ~ta~~a~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~  230 (349)
T TIGR03201       153 TTPYQAAV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIK  230 (349)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHH
Confidence            56788874 578899999999996 999999999999999999988877654               11   24566677


Q ss_pred             hHcCC-Ccc----EEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHH
Q 041355           64 RWFPQ-GID----IYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLY  137 (180)
Q Consensus        64 ~~~~~-~~d----~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (180)
                      +.+++ ++|    .+|||+|+. .+..++++++++|+++.+|.....      ..+++..++.++.++.+.+...     
T Consensus       231 ~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~~~g~~~~~-----  299 (349)
T TIGR03201       231 AFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAK------TEYRLSNLMAFHARALGNWGCP-----  299 (349)
T ss_pred             hhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCC------cccCHHHHhhcccEEEEEecCC-----
Confidence            77776 776    899999976 677889999999999999875421      2344455666677777766433     


Q ss_pred             HHHHHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          138 LKFLELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ...+..+++++++|++++  +++ +|||+++++|++.++++.
T Consensus       300 ~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~  340 (349)
T TIGR03201       300 PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHK  340 (349)
T ss_pred             HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCC
Confidence            345788999999999975  454 689999999999988764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.87  E-value=3.2e-20  Score=141.29  Aligned_cols=161  Identities=15%  Similarity=0.117  Sum_probs=124.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~   67 (180)
                      +++|+++.+...+++|++|+|.| +|++|++++|+||.+|++|++++.++++              +..+ .+.+++.++
T Consensus       169 ~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~~~~  246 (360)
T PLN02586        169 ITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTD-PEKMKAAIG  246 (360)
T ss_pred             HHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCC-HHHHHhhcC
Confidence            56788886666778999999987 6999999999999999998887776543              0111 123444443


Q ss_pred             CCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           68 QGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        68 ~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                       ++|++|||+|.. .+..++++++++|+++.+|....      ...+++..++.++..+.++....     ...++++++
T Consensus       247 -~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~  314 (360)
T PLN02586        247 -TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEK------PLELPIFPLVLGRKLVGGSDIGG-----IKETQEMLD  314 (360)
T ss_pred             -CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCC------CCccCHHHHHhCCeEEEEcCcCC-----HHHHHHHHH
Confidence             699999999975 78889999999999999986431      12345556677777777776543     245788999


Q ss_pred             HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          147 AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       147 ~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.+|++++.+ ++|+|+++++|++.++++.
T Consensus       315 li~~g~i~~~~-~~~~l~~~~~A~~~~~~~~  344 (360)
T PLN02586        315 FCAKHNITADI-ELIRMDEINTAMERLAKSD  344 (360)
T ss_pred             HHHhCCCCCcE-EEEeHHHHHHHHHHHHcCC
Confidence            99999999876 5799999999999998774

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.87  E-value=2.4e-20  Score=142.39  Aligned_cols=167  Identities=17%  Similarity=0.120  Sum_probs=125.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C--cchHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E--EPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~--~~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .  ++++.+.++
T Consensus       171 ~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~  249 (368)
T TIGR02818       171 TTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIV  249 (368)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHH
Confidence            57888887888999999999998 69999999999999999 79988877654               1  123456677


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|+. .+..++.+++++ |+++.+|.....    .....+...++. +..+.+......  ..+..+
T Consensus       250 ~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~~~~~-~~~~~g~~~~~~--~~~~~~  322 (368)
T TIGR02818       250 EITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAG----QEISTRPFQLVT-GRVWRGSAFGGV--KGRTEL  322 (368)
T ss_pred             HHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCC----CcccccHHHHhc-cceEEEeeccCC--CcHHHH
Confidence            77766899999999965 788899999886 999999875321    111222333333 334556544321  113457


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++.+|.++  ++++++|+|+++++|++.++++
T Consensus       323 ~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~  359 (368)
T TIGR02818       323 PGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEG  359 (368)
T ss_pred             HHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCC
Confidence            8899999999885  4689999999999999998765

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.87  E-value=3.2e-20  Score=141.69  Aligned_cols=167  Identities=20%  Similarity=0.177  Sum_probs=127.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       172 ~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~  250 (368)
T cd08300         172 TTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLV  250 (368)
T ss_pred             hhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHH
Confidence            57888887888899999999998 69999999999999999 79998887655               11  24666777


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|+. .+..++.+++++ |+++.+|.....    .........+. ....+.++....+.  .+..+
T Consensus       251 ~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~  323 (368)
T cd08300         251 EMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAG----QEISTRPFQLV-TGRVWKGTAFGGWK--SRSQV  323 (368)
T ss_pred             HHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCC----CccccCHHHHh-hcCeEEEEEecccC--cHHHH
Confidence            77777899999999975 888899999886 999999875321    11122222233 23455565543321  23457


Q ss_pred             HHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++.+|.+++  +++++|+|+++++|++.++++
T Consensus       324 ~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~  360 (368)
T cd08300         324 PKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAG  360 (368)
T ss_pred             HHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCC
Confidence            78899999999985  588999999999999998765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.87  E-value=3.5e-20  Score=141.55  Aligned_cols=168  Identities=17%  Similarity=0.133  Sum_probs=130.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       173 ~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~  251 (369)
T cd08301         173 STGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIA  251 (369)
T ss_pred             hHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHH
Confidence            46788877778899999999998 69999999999999999 79999887665               11  23555667


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|.. .+...+.+++++ |+++.+|.....    ....++...++ +++++.++....+.  .+..+
T Consensus       252 ~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~----~~~~~~~~~~~-~~~~i~g~~~~~~~--~~~~~  324 (369)
T cd08301         252 EMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKD----AVFSTHPMNLL-NGRTLKGTLFGGYK--PKTDL  324 (369)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCC----cccccCHHHHh-cCCeEEEEecCCCC--hHHHH
Confidence            76666899999999976 678889999996 999999876431    11223333333 67899888765431  23457


Q ss_pred             HHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.++.++.  +++++||++++++|++.++++.
T Consensus       325 ~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~  362 (369)
T cd08301         325 PNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGE  362 (369)
T ss_pred             HHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCC
Confidence            88999999998764  6789999999999999988763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.86  E-value=3.8e-20  Score=141.13  Aligned_cols=166  Identities=19%  Similarity=0.158  Sum_probs=127.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .+  .++.+.++
T Consensus       170 ~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~  248 (365)
T cd08277         170 STGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIR  248 (365)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHH
Confidence            57888887888999999999997 69999999999999999 79888887654               11  23455666


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|+. .+...+.+++++ |+++.+|...+.     ..+.++..++. +.++.++....+.  .+..+
T Consensus       249 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~-~~~i~g~~~~~~~--~~~~~  320 (365)
T cd08277         249 EMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGA-----ELSIRPFQLIL-GRTWKGSFFGGFK--SRSDV  320 (365)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcc-----ccccCHhHHhh-CCEEEeeecCCCC--hHHHH
Confidence            66666899999999964 778899999875 999999875421     11233334443 6788887765431  12356


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++.++.++  ++++++|+++++++|++.++++
T Consensus       321 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  357 (365)
T cd08277         321 PKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSG  357 (365)
T ss_pred             HHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCC
Confidence            7889999988755  6789999999999999988776

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.86  E-value=3.6e-20  Score=131.75  Aligned_cols=167  Identities=19%  Similarity=0.187  Sum_probs=134.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHH-HHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDA-ALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~-~~~   63 (180)
                      +|||..|.+..++++||+|.-.||.++||++.+|+||++|++.+.++|+...                 .++++.. ..+
T Consensus       146 ~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~  225 (354)
T KOG0025|consen  146 CTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMK  225 (354)
T ss_pred             hHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhh
Confidence            5899999999999999999999999999999999999999988888887654                 1111111 111


Q ss_pred             hH-cCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch------HH
Q 041355           64 RW-FPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY------YH  135 (180)
Q Consensus        64 ~~-~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  135 (180)
                      +. ... ++.++|+|+|+.....+.+.|..+|+++++|...     ..+.......++++++.++|+++..|      ++
T Consensus       226 k~~~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMS-----kqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe  300 (354)
T KOG0025|consen  226 KFKGDNPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMS-----KQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPE  300 (354)
T ss_pred             hhhccCCCceEEEeccCchhHHHHHHHHhcCceEEEecCcc-----CCCcccccchheeccceeeeeeeeehhhccCCcH
Confidence            11 123 7899999999998889999999999999998866     33445556678899999999999877      34


Q ss_pred             HHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHH
Q 041355          136 LYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTL  173 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l  173 (180)
                      ...+.+.++.+++..|+|+.......+|++...|++..
T Consensus       301 ~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~  338 (354)
T KOG0025|consen  301 ERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAA  338 (354)
T ss_pred             HHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHH
Confidence            44578899999999999998877778999888887753

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.86  E-value=1.1e-19  Score=138.81  Aligned_cols=161  Identities=16%  Similarity=0.137  Sum_probs=124.7

Q ss_pred             chHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      +++|+++..... .++|++|+|.| +|++|++++|+||.+|++|+++++++++              +..+ .+.+.+.+
T Consensus       163 ~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~-~~~v~~~~  240 (375)
T PLN02178        163 ITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTD-SQKMKEAV  240 (375)
T ss_pred             hHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcC-HHHHHHhh
Confidence            467888754433 36899999998 6999999999999999999988876432              1111 13444444


Q ss_pred             CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      + ++|++|||+|.. .+..++++++++|+++.+|....      ...+++..++.+++++.|+....     .+.+.+++
T Consensus       241 ~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  308 (375)
T PLN02178        241 G-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK------PLDLPIFPLVLGRKMVGGSQIGG-----MKETQEML  308 (375)
T ss_pred             C-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC------CCccCHHHHHhCCeEEEEeCccC-----HHHHHHHH
Confidence            3 699999999977 78899999999999999986531      12345667778888998877644     24578889


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.+ ++|||+++++|++.++++.
T Consensus       309 ~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~  339 (375)
T PLN02178        309 EFCAKHKIVSDI-ELIKMSDINSAMDRLAKSD  339 (375)
T ss_pred             HHHHhCCCcccE-EEEeHHHHHHHHHHHHcCC
Confidence            999999999877 5799999999999998764

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.86  E-value=6.3e-20  Score=139.24  Aligned_cols=163  Identities=23%  Similarity=0.239  Sum_probs=133.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ ...++++|++|+|+| +|++|++++|+|+.+|+ +|+++++++++               .+.++.+.+++.
T Consensus       159 ~ta~~~l-~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~  236 (351)
T cd08233         159 AVAWHAV-RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKL  236 (351)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHH
Confidence            4688988 778899999999998 69999999999999999 78888776544               334577778887


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+|. ..+..++++++++|+++.+|....      ...+++..++.+++++.+.....     .+.+++
T Consensus       237 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~  305 (351)
T cd08233         237 TGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEK------PISFNPNDLVLKEKTLTGSICYT-----REDFEE  305 (351)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCC------CCccCHHHHHhhCcEEEEEeccC-----cchHHH
Confidence            776 79999999985 488899999999999999987541      22455667778889998886543     356788


Q ss_pred             HHHHHHCCCcc--ceeeeecchhhH-HHHHHHHHhhh
Q 041355          144 VIPAIREGKMV--YVEDIAEGLEKI-SRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~--~~~~~~~~~~~~-~~a~~~l~~~~  177 (180)
                      +.+++++|.++  +.++++|+++++ ++|++.++++.
T Consensus       306 ~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~  342 (351)
T cd08233         306 VIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDK  342 (351)
T ss_pred             HHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCC
Confidence            99999999995  467889999996 79999888775

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.85  E-value=5.5e-20  Score=132.70  Aligned_cols=160  Identities=18%  Similarity=0.189  Sum_probs=133.2

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhH
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRW   65 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~   65 (180)
                      |+|..| ...++.||+++.|.|+. ++|.+++|+||++|.+|+++.+++.+                 ++++..+.+.+.
T Consensus       169 TvYspL-k~~g~~pG~~vgI~GlG-GLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~  246 (360)
T KOG0023|consen  169 TVYSPL-KRSGLGPGKWVGIVGLG-GLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKT  246 (360)
T ss_pred             EEeehh-HHcCCCCCcEEEEecCc-ccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHh
Confidence            567778 67788899999999954 49999999999999999999999743                 467788888888


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +++.+|-+... ....+..++.+++++|+++.+|.+..      ...+....+..+.+++.|+....     +...++++
T Consensus       247 ~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~------~~~~~~~~lil~~~~I~GS~vG~-----~ket~E~L  314 (360)
T KOG0023|consen  247 TDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEK------PLKLDTFPLILGRKSIKGSIVGS-----RKETQEAL  314 (360)
T ss_pred             hcCcceeeeec-cccchHHHHHHhhcCCEEEEEeCcCC------cccccchhhhcccEEEEeecccc-----HHHHHHHH
Confidence            76666665544 33388899999999999999998763      34556677888999999999987     45678899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++..++.+++.+ +..+++++++||++|+++.
T Consensus       315 df~a~~~ik~~I-E~v~~~~v~~a~erm~kgd  345 (360)
T KOG0023|consen  315 DFVARGLIKSPI-ELVKLSEVNEAYERMEKGD  345 (360)
T ss_pred             HHHHcCCCcCce-EEEehhHHHHHHHHHHhcC
Confidence            999999999988 6689999999999999873

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.85  E-value=1.6e-19  Score=135.68  Aligned_cols=176  Identities=46%  Similarity=0.672  Sum_probs=135.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+...+.+|++|+|+|++|++|++++|++|..|++|+++++++++                .+.++.+.+.+.
T Consensus       131 ~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~  210 (329)
T cd05288         131 LTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEA  210 (329)
T ss_pred             HHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHh
Confidence            5788888777889999999999999999999999999999999998876532                223455666666


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +++++|+++||+|+..+..++++++++|+++.++..............+....+.+++++.+...........+.+.++.
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (329)
T cd05288         211 APDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELA  290 (329)
T ss_pred             ccCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHH
Confidence            65689999999998888999999999999999986543211000001234556778888888776443333356788899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+++....++++++++++++.++++.
T Consensus       291 ~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~  322 (329)
T cd05288         291 KWLAEGKLKYREDVVEGLENAPEAFLGLFTGK  322 (329)
T ss_pred             HHHHCCCccccccccccHHHHHHHHHHHhcCC
Confidence            99999999887666789999999999887653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.85  E-value=4.8e-20  Score=137.60  Aligned_cols=161  Identities=12%  Similarity=0.081  Sum_probs=116.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC-CCC-C-cchH-HHHHHhHcCCCccEEEeCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS-KEK-E-EPDL-DAALKRWFPQGIDIYFENV   77 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~-~~~-~-~~~~-~~~~~~~~~~~~d~~~d~~   77 (180)
                      .+||+++.+ . ..++++++|+| +|++|++++|+||.+|++++++.+. +++ . .... .-...+..+.++|++|||+
T Consensus       132 ~~a~~~~~~-~-~~~~~~vlV~G-~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~  208 (308)
T TIGR01202       132 ATARHAVAG-A-EVKVLPDLIVG-HGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDAS  208 (308)
T ss_pred             HHHHHHHHh-c-ccCCCcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECC
Confidence            578888844 3 34688999998 7999999999999999975544433 222 0 0000 0000111223799999999


Q ss_pred             Chh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCCCccc-
Q 041355           78 GGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVY-  155 (180)
Q Consensus        78 g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-  155 (180)
                      |++ .+..++++++++|+++.+|....      ...+++...+.+++++.+.....     .+.++++++++.+|.+++ 
T Consensus       209 G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~g~i~~~  277 (308)
T TIGR01202       209 GDPSLIDTLVRRLAKGGEIVLAGFYTE------PVNFDFVPAFMKEARLRIAAEWQ-----PGDLHAVRELIESGALSLD  277 (308)
T ss_pred             CCHHHHHHHHHhhhcCcEEEEEeecCC------CcccccchhhhcceEEEEecccc-----hhHHHHHHHHHHcCCCChh
Confidence            986 68999999999999999987532      12344456677888888765433     356888999999999976 


Q ss_pred             -eeeeecchhhHHHHHHHHHhh
Q 041355          156 -VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       156 -~~~~~~~~~~~~~a~~~l~~~  176 (180)
                       +++++|||+++++|++.+.++
T Consensus       278 ~~it~~~~l~~~~~A~~~~~~~  299 (308)
T TIGR01202       278 GLITHQRPASDAAEAYMTAFSD  299 (308)
T ss_pred             hccceeecHHHHHHHHHHHhcC
Confidence             688999999999999977654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.85  E-value=1.4e-19  Score=137.68  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=126.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~   67 (180)
                      ++||+++.+....++|++++|+| +|++|++++|+||.+|++|+++++++++              ...+ ...+.+.+ 
T Consensus       166 ~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~-  242 (357)
T PLN02514        166 VTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD-AAEMQEAA-  242 (357)
T ss_pred             HHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC-hHHHHHhc-
Confidence            56788886656668999999997 7999999999999999998888876543              0001 12233333 


Q ss_pred             CCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           68 QGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        68 ~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      +++|++|||+|.. .+..++++++++|+++.+|....      ...++...++.++.++.++....     ...+.++++
T Consensus       243 ~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~  311 (357)
T PLN02514        243 DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT------PLQFVTPMLMLGRKVITGSFIGS-----MKETEEMLE  311 (357)
T ss_pred             CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC------CCcccHHHHhhCCcEEEEEecCC-----HHHHHHHHH
Confidence            3699999999964 88899999999999999987532      12355567778889999887654     235778899


Q ss_pred             HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          147 AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       147 ~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.+|.+++.+ ++|+++++++|++.++++.
T Consensus       312 ~~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~  341 (357)
T PLN02514        312 FCKEKGLTSMI-EVVKMDYVNTAFERLEKND  341 (357)
T ss_pred             HHHhCCCcCcE-EEEcHHHHHHHHHHHHcCC
Confidence            99999998877 5799999999999998764

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.85  E-value=1.2e-19  Score=136.57  Aligned_cols=161  Identities=16%  Similarity=0.050  Sum_probs=122.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH--------HhHcCCCccEE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL--------KRWFPQGIDIY   73 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~   73 (180)
                      ++||+++ +..++++|++|+|+|+ |++|++++|+||.+|++|+++++++++  .++...+        .+...+++|.+
T Consensus       152 ~ta~~~~-~~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~--~~~a~~~Ga~~vi~~~~~~~~~~d~~  227 (329)
T TIGR02822       152 IIGYRAL-LRASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAA--RRLALALGAASAGGAYDTPPEPLDAA  227 (329)
T ss_pred             hHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHH--HHHHHHhCCceeccccccCcccceEE
Confidence            5789998 4688999999999995 999999999999999999998887664  0111000        01112368988


Q ss_pred             EeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCCC
Q 041355           74 FENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGK  152 (180)
Q Consensus        74 ~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  152 (180)
                      +++.+.. .+...+++++++|+++.+|.....     ...+++..++.+++++.++....     +..+.++++++++|+
T Consensus       228 i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~  297 (329)
T TIGR02822       228 ILFAPAGGLVPPALEALDRGGVLAVAGIHLTD-----TPPLNYQRHLFYERQIRSVTSNT-----RADAREFLELAAQHG  297 (329)
T ss_pred             EECCCcHHHHHHHHHhhCCCcEEEEEeccCcc-----CCCCCHHHHhhCCcEEEEeecCC-----HHHHHHHHHHHHhCC
Confidence            8887644 888999999999999999874321     12345556677888888876543     334677889999999


Q ss_pred             ccceeeeecchhhHHHHHHHHHhhh
Q 041355          153 MVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       153 ~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++ ++++|+|+++++|++.++++.
T Consensus       298 i~~-i~~~~~l~~~~~A~~~~~~~~  321 (329)
T TIGR02822       298 VRV-TTHTYPLSEADRALRDLKAGR  321 (329)
T ss_pred             Cee-EEEEEeHHHHHHHHHHHHcCC
Confidence            975 578999999999999998774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.84  E-value=5.1e-19  Score=132.54  Aligned_cols=171  Identities=20%  Similarity=0.210  Sum_probs=136.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+...+.+|++++|+|++|++|++++|+|+.+|++++++++++++               ...++...+.+.+
T Consensus       124 ~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  203 (323)
T cd05282         124 LTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEAT  203 (323)
T ss_pred             HHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHh
Confidence            5678888788888999999999999999999999999999999998887654               2234556677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHLYLKF  140 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  140 (180)
                      .+ ++|+++||+|+......+++++++|+++.++.....     ....+...+..+++++.+.....+     +....+.
T Consensus       204 ~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (323)
T cd05282         204 GGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGE-----PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQET  278 (323)
T ss_pred             cCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCC-----CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHH
Confidence            66 899999999988777889999999999999765431     123344444447888888776442     2344567


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++.+++.++.+.+.+.++++++++++|++.++++.
T Consensus       279 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  315 (323)
T cd05282         279 FAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPG  315 (323)
T ss_pred             HHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCC
Confidence            8889999999999887778899999999999888653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.84  E-value=5.4e-19  Score=132.46  Aligned_cols=170  Identities=23%  Similarity=0.273  Sum_probs=134.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++| +++.+..+++++++++|+|++|++|++++|+|+.+|++|+++++++++               .+.++.+.+.+..
T Consensus       129 ~ta-~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  207 (324)
T cd08244         129 RTA-LGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREAL  207 (324)
T ss_pred             HHH-HHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHc
Confidence            456 445577889999999999999999999999999999999999877543               2345666677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      ++ ++|+++||+|+.....++++++++|+++.++.....     ...++....+.+++++.+...... +....+.+.++
T Consensus       208 ~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (324)
T cd08244         208 GGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGE-----WTALDEDDARRRGVTVVGLLGVQAERGGLRALEARA  282 (324)
T ss_pred             CCCCceEEEECCChHhHHHHHHHhccCcEEEEEecCCCC-----CCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHH
Confidence            66 899999999988888899999999999999875421     113344456778888887765432 23345678888


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++.++.+.+.+..+++++++++|++.++++.
T Consensus       283 ~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  315 (324)
T cd08244         283 LAEAAAGRLVPVVGQTFPLERAAEAHAALEARS  315 (324)
T ss_pred             HHHHHCCCccCccceEEeHHHHHHHHHHHHcCC
Confidence            999999999888778899999999999888653

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.84  E-value=8.5e-19  Score=132.45  Aligned_cols=171  Identities=23%  Similarity=0.147  Sum_probs=133.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC----C---------------Ccc---hHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE----K---------------EEP---DLD   59 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~----~---------------~~~---~~~   59 (180)
                      ++||+++.+...+++|++|+|+|++|++|++++|+|+.+|+++++++++++    +               ...   ++.
T Consensus       132 ~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  211 (341)
T cd08290         132 CTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLAT  211 (341)
T ss_pred             HHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHH
Confidence            578888877788999999999999999999999999999999999888752    1               111   455


Q ss_pred             HHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----H
Q 041355           60 AALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----Y  134 (180)
Q Consensus        60 ~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  134 (180)
                      ..++...++++|++|||+|+..+...+++++++|+++.++.....     ....+....+.+++++.+......     +
T Consensus       212 ~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (341)
T cd08290         212 ELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQ-----PVTVPTSLLIFKDITLRGFWLTRWLKRANP  286 (341)
T ss_pred             HHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEEEEEeccCCC-----CcccCHHHHhhCCceEEEEecHHHHhhcCH
Confidence            556665555799999999988888889999999999999754321     123344456788899888876432     2


Q ss_pred             HHHHHHHHHHHHHHHCCCccceeeeec---chhhHHHHHHHHHhhh
Q 041355          135 HLYLKFLELVIPAIREGKMVYVEDIAE---GLEKISRNCYTLKWRV  177 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~l~~~~  177 (180)
                      ......+..+++++.++.+.+....++   +++++++|++.++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  332 (341)
T cd08290         287 EEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGG  332 (341)
T ss_pred             HHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcC
Confidence            233456888999999999998766677   9999999999987653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.84  E-value=6e-19  Score=133.68  Aligned_cols=163  Identities=25%  Similarity=0.299  Sum_probs=128.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~   68 (180)
                      ++||+++ ...++++|++++|+|++|++|++++|+|+.+|++++++++++..             ........ ...+.+
T Consensus       164 ~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~  241 (350)
T cd08274         164 STAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLAD-AKALGG  241 (350)
T ss_pred             HHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEEeCCCccHHH-HHhhCC
Confidence            4678887 77889999999999988999999999999999999988876521             11111222 344444


Q ss_pred             -CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHH
Q 041355           69 -GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPA  147 (180)
Q Consensus        69 -~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                       ++|++|||+|++.+...+++++++|+++.++....     .....++..++.++.++.+.....     .+.+.++.++
T Consensus       242 ~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l  311 (350)
T cd08274         242 EPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAG-----PVVELDLRTLYLKDLTLFGSTLGT-----REVFRRLVRY  311 (350)
T ss_pred             CCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCC-----ccccCCHHHhhhcceEEEEeecCC-----HHHHHHHHHH
Confidence             89999999998888999999999999999976421     112445556677888888877643     3567888999


Q ss_pred             HHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          148 IREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       148 ~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.++.+++.+.++++++++++|++.+.++
T Consensus       312 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~  340 (350)
T cd08274         312 IEEGEIRPVVAKTFPLSEIREAQAEFLEK  340 (350)
T ss_pred             HHCCCcccccccccCHHHHHHHHHHHhcC
Confidence            99999998878899999999999988765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.83  E-value=3.9e-19  Score=135.36  Aligned_cols=166  Identities=19%  Similarity=0.163  Sum_probs=124.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccc---hHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEP---DLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~---~~~~~~   62 (180)
                      ++||+++.+....++|++|||+| +|++|++++|+||.+|+ +|+++++++++               +..   ++...+
T Consensus       163 ~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i  241 (361)
T cd08231         163 ATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIV  241 (361)
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHH
Confidence            57899997766677999999997 79999999999999999 99988876553               111   122457


Q ss_pred             HhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ++.+++ ++|++|||+|+. .+...+++++++|+++.+|....    .....++...++.+++++.++....     .+.
T Consensus       242 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  312 (361)
T cd08231         242 RDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAP----AGTVPLDPERIVRKNLTIIGVHNYD-----PSH  312 (361)
T ss_pred             HHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCC----CCccccCHHHHhhcccEEEEcccCC-----chh
Confidence            777766 899999999864 78889999999999999986532    1112334445677888888876533     223


Q ss_pred             HHHHHHHHHCC----CccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREG----KMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g----~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++++.++    .+.++++++|+++++++|++.++++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~  353 (361)
T cd08231         313 LYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGT  353 (361)
T ss_pred             HHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC
Confidence            55566666665    45567789999999999999887753

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.83  E-value=4.8e-19  Score=136.99  Aligned_cols=157  Identities=16%  Similarity=0.126  Sum_probs=122.7

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC---EEEEEeCCCCC------------------------Cc-chHHHH
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC---YVVGSAGSKEK------------------------EE-PDLDAA   61 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~---~vi~~~~~~~~------------------------~~-~~~~~~   61 (180)
                      +..++++|++|+|+|++|++|++++|+||.+|+   +|+++++++++                        .+ +++.+.
T Consensus       169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~  248 (410)
T cd08238         169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHAT  248 (410)
T ss_pred             hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHH
Confidence            456789999999999999999999999999864   78888776543                        01 245556


Q ss_pred             HHhHcCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHH
Q 041355           62 LKRWFPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLK  139 (180)
Q Consensus        62 ~~~~~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +++.+++ ++|+++||+|. ..+..++++++++|+++.++.....   .....+++..++.+++++.|+....     ..
T Consensus       249 v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~-----~~  320 (410)
T cd08238         249 LMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDK---NFSAPLNFYNVHYNNTHYVGTSGGN-----TD  320 (410)
T ss_pred             HHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCC---CccccccHHHhhhcCcEEEEeCCCC-----HH
Confidence            7777776 89999999985 4888999999999988876542211   1112455667788899999876543     34


Q ss_pred             HHHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHH
Q 041355          140 FLELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLK  174 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~  174 (180)
                      .++++++++.+|++++  +++++|||+++++|++.+.
T Consensus       321 ~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~  357 (410)
T cd08238         321 DMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP  357 (410)
T ss_pred             HHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh
Confidence            5778999999999988  7899999999999999988

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.83  E-value=8.4e-19  Score=134.75  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=120.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +++|+++ +..++++|++|+|.| +|++|++++|+||.+|++++++ ++++++               .++++.+.+.+.
T Consensus       172 ~ta~~a~-~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~  249 (393)
T TIGR02819       172 PTGYHGA-VTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQI  249 (393)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHH
Confidence            4678887 457899999999966 8999999999999999975544 444322               123456667777


Q ss_pred             cCC-CccEEEeCCChh---------------hHHHHHHhhccCCEEEEEeccccccCCC-------CccccchHHHhhcC
Q 041355           66 FPQ-GIDIYFENVGGK---------------MLDAVLLNMRLRGRIAVSSIISQYNLEK-------PEGVHNLEQLIGKR  122 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~---------------~~~~~~~~l~~~G~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~  122 (180)
                      +++ ++|++|||+|.+               .+..++++++++|+++.+|.........       ....+.......++
T Consensus       250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  329 (393)
T TIGR02819       250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKS  329 (393)
T ss_pred             cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccC
Confidence            776 899999999974               7899999999999999999863211000       01122233444555


Q ss_pred             cEEEeeeccchHHHHHHHHHHHHHHHHCCCccc--eee-eecchhhHHHHHHHHHhh
Q 041355          123 IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVY--VED-IAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~-~~~~~~~~~~a~~~l~~~  176 (180)
                      +++.+....     ..+++.++++++.+|++++  +++ ++|||+++++||+.+.++
T Consensus       330 ~~i~g~~~~-----~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~  381 (393)
T TIGR02819       330 HSFHTGQTP-----VMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAG  381 (393)
T ss_pred             ceEEeccCC-----hhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhC
Confidence            666652211     1234567899999999875  566 789999999999998765

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.83  E-value=2.4e-19  Score=132.12  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=115.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC-------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~-------------~~~~~~~~~~~~~~   67 (180)
                      +++|+++ +.....+|++|+|+| +|++|++++|+||.+|++ |+++++++++             +..+..+.+++.+.
T Consensus       107 ~ta~~al-~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~  184 (280)
T TIGR03366       107 ATVMAAL-EAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQN  184 (280)
T ss_pred             HHHHHHH-HhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhC
Confidence            4677887 445567999999998 699999999999999995 8887666554             11222344556666


Q ss_pred             C-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           68 Q-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        68 ~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      + ++|++|||+|.. .+..++++++++|+++.+|.....    ....+++..++.+++++.++....     .+.+++++
T Consensus       185 ~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~i~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  255 (280)
T TIGR03366       185 GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG----GPVALDPEQVVRRWLTIRGVHNYE-----PRHLDQAV  255 (280)
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC----CceeeCHHHHHhCCcEEEecCCCC-----HHHHHHHH
Confidence            5 899999999866 788999999999999999865321    123456677888999999877543     34577888


Q ss_pred             HHHHCC--Cc--cceeeeecchhhH
Q 041355          146 PAIREG--KM--VYVEDIAEGLEKI  166 (180)
Q Consensus       146 ~~~~~g--~~--~~~~~~~~~~~~~  166 (180)
                      +++.++  .+  +++++++||++++
T Consensus       256 ~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       256 RFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             HHHHhhCCCCCHHHHhhcccccccC
Confidence            888874  43  3578899999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.83  E-value=1e-18  Score=130.53  Aligned_cols=169  Identities=17%  Similarity=0.202  Sum_probs=129.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~   67 (180)
                      ++||+++.+..++++|++|+|+|++|++|++++|+|+..|++|+++++++++              ...++.+.+++. +
T Consensus       128 ~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~  206 (320)
T cd08243         128 YTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-P  206 (320)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-C
Confidence            5788888887889999999999999999999999999999999998887643              223455566666 4


Q ss_pred             CCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHH--HhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           68 QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQ--LIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        68 ~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +++|+++||+|+..+...+++++++|+++.+|.......   ........  .+.+++++.++.....   ....++.+.
T Consensus       207 ~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  280 (320)
T cd08243         207 GGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQWT---LEDFNPMDDIPSGVNLTLTGSSSGDV---PQTPLQELF  280 (320)
T ss_pred             CCceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCcc---cCCcchhhhhhhccceEEEecchhhh---hHHHHHHHH
Confidence            589999999998888999999999999999986532210   11111111  2355666666654321   234678889


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+++...++++++++++|++.++++.
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~  312 (320)
T cd08243         281 DFVAAGHLDIPPSKVFTFDEIVEAHAYMESNR  312 (320)
T ss_pred             HHHHCCceecccccEEcHHHHHHHHHHHHhCC
Confidence            99999999887778899999999999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.83  E-value=4e-19  Score=134.41  Aligned_cols=161  Identities=16%  Similarity=0.117  Sum_probs=115.2

Q ss_pred             chHHHHHHHH--cCCCCCCEEEEecCCchHHHHHHHHHHH-cCC-EEEEEeCCCCC----CcchHHHHHHhHcCC-CccE
Q 041355            2 LIVGNLIILV--CSPKKGEYVYVSAASGAVGQLVGQFAKL-AGC-YVVGSAGSKEK----EEPDLDAALKRWFPQ-GIDI   72 (180)
Q Consensus         2 l~a~~~l~~~--~~~~~g~~vlI~Ga~g~vG~~~iqlak~-~g~-~vi~~~~~~~~----~~~~~~~~~~~~~~~-~~d~   72 (180)
                      .++|+++.+.  ..+++|++|+|.| +|++|++++|+++. +|+ +|+++++++++    ...+....+.+...+ ++|+
T Consensus       147 ~~a~~a~~~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~  225 (341)
T cd08237         147 SVGVHAISRFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDH  225 (341)
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcE
Confidence            4678887543  3568999999999 69999999999986 664 89988887665    110000011122233 7999


Q ss_pred             EEeCCCh---h-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHH
Q 041355           73 YFENVGG---K-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAI  148 (180)
Q Consensus        73 ~~d~~g~---~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +|||+|+   + .+..++++++++|+++.+|....      ...++...++.+++++.++....     .+.++++++++
T Consensus       226 viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~~  294 (341)
T cd08237         226 AFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEY------PVPINTRMVLEKGLTLVGSSRST-----REDFERAVELL  294 (341)
T ss_pred             EEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCC------CcccCHHHHhhCceEEEEecccC-----HHHHHHHHHHH
Confidence            9999994   2 68889999999999999986431      12345566788999999876533     24577889999


Q ss_pred             HCC-----Cccceeeeecchhh---HHHHHHHHH
Q 041355          149 REG-----KMVYVEDIAEGLEK---ISRNCYTLK  174 (180)
Q Consensus       149 ~~g-----~~~~~~~~~~~~~~---~~~a~~~l~  174 (180)
                      .++     .++++++++|++++   +.++++.+.
T Consensus       295 ~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~  328 (341)
T cd08237         295 SRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDL  328 (341)
T ss_pred             HhCCcccCChHHHhccccccccHHHHHHHHHHHh
Confidence            988     57788899999854   555555443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.82  E-value=1.4e-18  Score=133.75  Aligned_cols=165  Identities=17%  Similarity=0.176  Sum_probs=128.9

Q ss_pred             chHHHHHHHH--cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------C--cc--------
Q 041355            2 LIVGNLIILV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------E--EP--------   56 (180)
Q Consensus         2 l~a~~~l~~~--~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~--~~--------   56 (180)
                      ++||+++...  .++++|++++|+|+.|++|++++|+||.+|++++++++++++             +  +.        
T Consensus       177 ~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~  256 (393)
T cd08246         177 ATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPD  256 (393)
T ss_pred             HHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEccccccccccccc
Confidence            5788888654  678999999999988999999999999999998888776543             0  00        


Q ss_pred             --------------hHHHHHHhHcCC--CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhh
Q 041355           57 --------------DLDAALKRWFPQ--GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG  120 (180)
Q Consensus        57 --------------~~~~~~~~~~~~--~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~  120 (180)
                                    .+.+.+.+.+++  ++|+++||+|+..+...+++++++|+++.++.....     ....+...+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~l~~  331 (393)
T cd08246         257 VNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGY-----NHTYDNRYLWM  331 (393)
T ss_pred             ccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCC-----CCCCcHHHHhh
Confidence                          134556666665  799999999988888899999999999999764321     12234455666


Q ss_pred             cCcEEEeeeccchHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          121 KRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++.++.+.....     .+.+..+++++.++.+.+.++++++++++++|++.++++
T Consensus       332 ~~~~i~g~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~  382 (393)
T cd08246         332 RQKRIQGSHFAN-----DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRN  382 (393)
T ss_pred             heeEEEecccCc-----HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhC
Confidence            777777766543     235677889999999998888899999999999998866

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.82  E-value=8e-19  Score=133.42  Aligned_cols=151  Identities=14%  Similarity=0.111  Sum_probs=111.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC---CC--------------CcchHHHHHHhHcCCCccEEEe
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK---EK--------------EEPDLDAALKRWFPQGIDIYFE   75 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~---~~--------------~~~~~~~~~~~~~~~~~d~~~d   75 (180)
                      ++++|++|+|+| +|++|++++|+||.+|++|+++++++   ++              .++++.+ . . ..+++|++||
T Consensus       169 ~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~-~-~-~~~~~d~vid  244 (355)
T cd08230         169 PTWNPRRALVLG-AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAE-V-K-LVGEFDLIIE  244 (355)
T ss_pred             ccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhh-h-h-hcCCCCEEEE
Confidence            367899999998 69999999999999999999988742   22              1122221 1 1 1247999999


Q ss_pred             CCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccc----hHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHC
Q 041355           76 NVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN----LEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIRE  150 (180)
Q Consensus        76 ~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      |+|.. .+..++++++++|+++.+|...+.    ....++    ...++.+++++.|+....     .+.++++++++.+
T Consensus       245 ~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~----~~~~~~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~l~~  315 (355)
T cd08230         245 ATGVPPLAFEALPALAPNGVVILFGVPGGG----REFEVDGGELNRDLVLGNKALVGSVNAN-----KRHFEQAVEDLAQ  315 (355)
T ss_pred             CcCCHHHHHHHHHHccCCcEEEEEecCCCC----CccccChhhhhhhHhhcCcEEEEecCCc-----hhhHHHHHHHHHh
Confidence            99976 788899999999999999876531    111222    245677889998876543     2335667777766


Q ss_pred             CC------ccceeeeecchhhHHHHHHHHHhh
Q 041355          151 GK------MVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       151 g~------~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.      ++++++++|+++++++|++.++++
T Consensus       316 ~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~  347 (355)
T cd08230         316 WKYRWPGVLERLITRRVPLEEFAEALTEKPDG  347 (355)
T ss_pred             cccccccchHHheeeeecHHHHHHHHHhcccC
Confidence            55      677889999999999999987654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.82  E-value=4.9e-18  Score=126.52  Aligned_cols=170  Identities=25%  Similarity=0.278  Sum_probs=132.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++|+++.+..++++|++++|+|++|++|++++++++.+|++|+++++++++               ...++...++..+
T Consensus       122 ~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  201 (320)
T cd05286         122 LTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREIT  201 (320)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHc
Confidence            4678888788899999999999999999999999999999999998876543               2234556677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch---HHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY---YHLYLKFLE  142 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  142 (180)
                      .+ ++|++++|+++.....++++++++|+++.++.....     ...+++..+..+++++.+......   +......+.
T Consensus       202 ~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (320)
T cd05286         202 GGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGP-----VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAA  276 (320)
T ss_pred             CCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCC-----CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHH
Confidence            65 899999999988888899999999999999864421     122344444467777766543222   333456778


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++.+++.++.+.+...+.+++++++++++.+..+
T Consensus       277 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~  310 (320)
T cd05286         277 ELFDAVASGKLKVEIGKRYPLADAAQAHRDLESR  310 (320)
T ss_pred             HHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcC
Confidence            8899999999988777889999999999988765

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.82  E-value=4.3e-18  Score=127.98  Aligned_cols=174  Identities=34%  Similarity=0.530  Sum_probs=132.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++++|+|++|++|++++|+++..|++|+++++++++               ...++...+....
T Consensus       125 ~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  204 (329)
T cd08250         125 LTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEY  204 (329)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhc
Confidence            5789999888889999999999999999999999999999999998877543               2223444555444


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-----CccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-----PEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++++|+++||+|+..+...+++++++|+++.++.........     ...... ...+.+++++.+...........+.+
T Consensus       205 ~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (329)
T cd08250         205 PKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHL  283 (329)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHH
Confidence            458999999999888889999999999999998654321000     001112 34567788888887654333345678


Q ss_pred             HHHHHHHHCCCccce--eeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++.+++.++.+.+.  ..++++++++++|++.++++
T Consensus       284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~  320 (329)
T cd08250         284 DRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSG  320 (329)
T ss_pred             HHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcC
Confidence            889999999999874  34568999999999988865

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.81  E-value=3.4e-18  Score=127.49  Aligned_cols=169  Identities=19%  Similarity=0.165  Sum_probs=130.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +++|+++. ..++++|++++|+| +|++|++++|+|+.+|++ |+++++++++               ...++...+++.
T Consensus       116 ~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~  193 (312)
T cd08269         116 GCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVREL  193 (312)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHH
Confidence            46777774 78899999999997 799999999999999998 8888876543               234566777777


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+|+. .....+++++++|+++.++....     .....++.....+++.+.++..... ....+.+++
T Consensus       194 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  267 (312)
T cd08269         194 TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQD-----GPRPVPFQTWNWKGIDLINAVERDP-RIGLEGMRE  267 (312)
T ss_pred             cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC-----CCcccCHHHHhhcCCEEEEecccCc-cchhhHHHH
Confidence            776 899999999865 77888999999999999986531     1123344456677777766553321 223467888


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhhc
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRVK  178 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~~  178 (180)
                      +.++++++.+.+  .+.++++++++++|++.++++..
T Consensus       268 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~  304 (312)
T cd08269         268 AVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPD  304 (312)
T ss_pred             HHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCC
Confidence            999999999987  35688999999999999988754

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.81  E-value=2.7e-18  Score=130.35  Aligned_cols=166  Identities=16%  Similarity=0.097  Sum_probs=123.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +..++++|++|+|+| +|++|++++|+||.+|+ .|+++++++++               .+.++.+.+++.
T Consensus       153 ~ta~~~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~  230 (351)
T cd08285         153 STGFHGA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKL  230 (351)
T ss_pred             hhHHHHH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHH
Confidence            5788885 778899999999997 79999999999999999 57888776543               234566677777


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccc--hHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN--LEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+ ++|+++||+|+. .+..++++++++|+++.++.....    .....+  ......+..++.+.....    ..+.+
T Consensus       231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~  302 (351)
T cd08285         231 TGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGED----DYLPIPREEWGVGMGHKTINGGLCPG----GRLRM  302 (351)
T ss_pred             hCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC----ceeecChhhhhhhccccEEEEeecCC----ccccH
Confidence            665 899999999975 788999999999999999865421    011111  111223344554433221    13567


Q ss_pred             HHHHHHHHCCCccc---eeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVY---VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~---~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++++|++++   .+.++++++++++|++.++++.
T Consensus       303 ~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~  341 (351)
T cd08285         303 ERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKP  341 (351)
T ss_pred             HHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhccc
Confidence            88999999999988   3446799999999999988864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.81  E-value=8e-18  Score=126.60  Aligned_cols=171  Identities=22%  Similarity=0.278  Sum_probs=131.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Ccch-HHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPD-LDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~-~~~~~~~~   65 (180)
                      ++||+++.+..++++|++++|+|++|++|++++|+|+..|++++++.+++++               ...+ +...+++.
T Consensus       126 ~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  205 (334)
T PTZ00354        126 LTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKL  205 (334)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHH
Confidence            5788888787899999999999999999999999999999987777776543               1222 56667777


Q ss_pred             cCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHHHHH
Q 041355           66 FPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHLYLK  139 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  139 (180)
                      +++ ++|+++||+|++.+...+++++++|+++.++.....    ....++...+..+..++.+......     +.....
T Consensus       206 ~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (334)
T PTZ00354        206 TGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGA----KVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVAS  281 (334)
T ss_pred             hCCCCceEEEECCchHHHHHHHHHhccCCeEEEEecCCCC----cccccCHHHHHhhCCEEEeeeccccchhhhHHHHHH
Confidence            765 899999999988889999999999999999854321    1111444555666667777654431     112234


Q ss_pred             HHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          140 FLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++.+.+++.++.+.+.+.+.+++++++++++.++.+
T Consensus       282 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PTZ00354        282 FEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQN  318 (334)
T ss_pred             HHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhC
Confidence            5677889999999998877889999999999988765

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.80  E-value=1.3e-17  Score=128.64  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=126.8

Q ss_pred             chHHHHHHH--HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc---------
Q 041355            2 LIVGNLIIL--VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE---------   55 (180)
Q Consensus         2 l~a~~~l~~--~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~---------   55 (180)
                      ++||+++..  ..++++|++++|+|++|++|++++|+++.+|++++++++++++               ++         
T Consensus       173 ~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~  252 (398)
T TIGR01751       173 ATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPD  252 (398)
T ss_pred             HHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhcccc
Confidence            567888754  4678999999999988999999999999999998887766443               00         


Q ss_pred             -------------chHHHHHHhHcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhc
Q 041355           56 -------------PDLDAALKRWFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK  121 (180)
Q Consensus        56 -------------~~~~~~~~~~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~  121 (180)
                                   ..+...+.+.+++ ++|++|||+|...+...+.+++++|+++.+|.....     ....+...+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~  327 (398)
T TIGR01751       253 LNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGY-----NHDYDNRYLWMR  327 (398)
T ss_pred             ccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCC-----CCCcCHHHHhhc
Confidence                         0133455666665 899999999988888899999999999999875432     122334455556


Q ss_pred             CcEEEeeeccchHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          122 RIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++.+......     +.++++.+++.++.+.+.+++++++++++++++.+.++.
T Consensus       328 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~  378 (398)
T TIGR01751       328 QKRIQGSHFANL-----REAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNH  378 (398)
T ss_pred             ccEEEccccCcH-----HHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCC
Confidence            666666654432     235678899999999988889999999999999887653

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.80  E-value=1.2e-17  Score=127.42  Aligned_cols=168  Identities=21%  Similarity=0.301  Sum_probs=128.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++|++++.+...+++|++|+|+| +|++|++++|+|+.+|+ .++++++++++               .++++.+.+++.
T Consensus       172 ~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~  250 (365)
T cd08278         172 QTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREI  250 (365)
T ss_pred             hhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHH
Confidence            56788887888899999999997 69999999999999999 57777766543               233566677777


Q ss_pred             cCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++.++|+++||+|.. .+..++++++++|+++.+|.....    +....++..++.++.++.++.....  ...+.+.++
T Consensus       251 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  324 (365)
T cd08278         251 TGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPG----AEVTLDVNDLLVSGKTIRGVIEGDS--VPQEFIPRL  324 (365)
T ss_pred             hCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCC----CccccCHHHHhhcCceEEEeecCCc--ChHHHHHHH
Confidence            744899999999864 788999999999999999865321    1224455555578888887765332  124567888


Q ss_pred             HHHHHCCCccc-eeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVY-VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~-~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++++.++.+.+ .+..+++++++++|++.++++
T Consensus       325 ~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~  357 (365)
T cd08278         325 IELYRQGKFPFDKLVTFYPFEDINQAIADSESG  357 (365)
T ss_pred             HHHHHcCCCChHHheEEecHHHHHHHHHHHHCC
Confidence            99999999864 234579999999999988765

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.79  E-value=2.3e-17  Score=123.98  Aligned_cols=169  Identities=24%  Similarity=0.240  Sum_probs=125.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++++|+|+.|++|++++|++|.+|++|+++++++++               +..++.+.+++.+
T Consensus       126 ~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  205 (327)
T PRK10754        126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEIT  205 (327)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHc
Confidence            4678888777889999999999999999999999999999999988876543               3345667778877


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCc------EEEeeeccchHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRI------RLEGFLAGDYYHLYLK  139 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  139 (180)
                      ++ ++|+++||+|+......+.+++++|+++.++.....     ....+...+..++.      ++.++.  ........
T Consensus       206 ~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  278 (327)
T PRK10754        206 GGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGP-----VTGVNLGILNQKGSLYVTRPSLQGYI--TTREELTE  278 (327)
T ss_pred             CCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCC-----CCCcCHHHHhccCceEEecceeeccc--CCHHHHHH
Confidence            76 899999999988888899999999999999865421     11122222222221      111111  11223445


Q ss_pred             HHHHHHHHHHCCCccce--eeeecchhhHHHHHHHHHhhh
Q 041355          140 FLELVIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+.++.+++.+|.+++.  ..+++++++++++++.++++.
T Consensus       279 ~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~  318 (327)
T PRK10754        279 ASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRA  318 (327)
T ss_pred             HHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCC
Confidence            67778999999999863  468899999999999887653

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.79  E-value=1.9e-17  Score=124.84  Aligned_cols=160  Identities=19%  Similarity=0.187  Sum_probs=125.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.. .++++|++|+|+| +|++|++++|+||.+|++|+++++++++               ...++.+.+++. 
T Consensus       150 ~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-  226 (333)
T cd08296         150 VTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL-  226 (333)
T ss_pred             HHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc-
Confidence            567888844 5899999999999 8999999999999999999999887643               223444455544 


Q ss_pred             CCCccEEEeCCC-hhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVG-GKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g-~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                       +++|+++||+| ...+...+++++++|+++.++....      ...++...++.+++++.+.....     ...+..+.
T Consensus       227 -~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~  294 (333)
T cd08296         227 -GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGE------PVAVSPLQLIMGRKSIHGWPSGT-----ALDSEDTL  294 (333)
T ss_pred             -CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCC------CCCcCHHHHhhcccEEEEeCcCC-----HHHHHHHH
Confidence             36999999987 4588889999999999999987541      22344556678899999887543     23566778


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+++.+ .+++++++.+|++.++++.
T Consensus       295 ~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~  325 (333)
T cd08296         295 KFSALHGVRPMV-ETFPLEKANEAYDRMMSGK  325 (333)
T ss_pred             HHHHhCCCCceE-EEEEHHHHHHHHHHHHCCC
Confidence            888999998876 5799999999999888653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.79  E-value=2.1e-17  Score=124.57  Aligned_cols=163  Identities=27%  Similarity=0.307  Sum_probs=124.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcCCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFPQG   69 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~~~   69 (180)
                      ++||+++.+. .++++++++|+|++|++|++++|+++..|++|+++++++++            ...++.+.+++.  ++
T Consensus       149 ~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  225 (334)
T PRK13771        149 GMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKYADYVIVGSKFSEEVKKI--GG  225 (334)
T ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCchhHHHHHHhc--CC
Confidence            5678888665 89999999999999999999999999999999988887644            011222333332  36


Q ss_pred             ccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHH
Q 041355           70 IDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIR  149 (180)
Q Consensus        70 ~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +|+++||+|+..+..++++++++|+++.+|.....    ..........+.+++++.+....     .++.++.+.+++.
T Consensus       226 ~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  296 (334)
T PRK13771        226 ADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPS----PTYSLRLGYIILKDIEIIGHISA-----TKRDVEEALKLVA  296 (334)
T ss_pred             CcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCC----CCcccCHHHHHhcccEEEEecCC-----CHHHHHHHHHHHH
Confidence            99999999988888999999999999999875421    11012233345677777776422     2456888999999


Q ss_pred             CCCccceeeeecchhhHHHHHHHHHhh
Q 041355          150 EGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       150 ~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++.+++.+.++++++++++|++.++++
T Consensus       297 ~~~l~~~~~~~~~~~~~~~a~~~~~~~  323 (334)
T PRK13771        297 EGKIKPVIGAEVSLSEIDKALEELKDK  323 (334)
T ss_pred             cCCCcceEeeeEcHHHHHHHHHHHHcC
Confidence            999998888899999999999988765

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.79  E-value=2.3e-17  Score=123.81  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=118.4

Q ss_pred             chHHHHHHHHc--C-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------Ccch-HHHHHHh
Q 041355            2 LIVGNLIILVC--S-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPD-LDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~--~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~-~~~~~~~   64 (180)
                      ++||+++....  . ...+++|+|+|++|++|++++|+|+.+|++|+++++++++             +..+ ..+.+.+
T Consensus       129 ~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  208 (326)
T cd08289         129 FTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKP  208 (326)
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHh
Confidence            35677664332  3 3457899999999999999999999999999999887654             1111 2334444


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      ..++++|.++||+|+..+...+++++++|+++.+|.....     ....++..++.+++++.+...... .......+..
T Consensus       209 ~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (326)
T cd08289         209 LEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGG-----EVETTVFPFILRGVNLLGIDSVECPMELRRRIWRR  283 (326)
T ss_pred             hccCCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCCC-----CCCcchhhhhhccceEEEEEeEecCchHHHHHHHH
Confidence            4444899999999988889999999999999999875321     112234455578888888754221 1122334444


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+.+....+.+.+.++++++++++|++.++++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~  317 (326)
T cd08289         284 LATDLKPTQLLNEIKQEITLDELPEALKQILQGR  317 (326)
T ss_pred             HHhhcCccccccccceEeeHHHHHHHHHHHhcCc
Confidence            4444433334445678899999999999987663

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.79  E-value=3.4e-17  Score=123.77  Aligned_cols=164  Identities=20%  Similarity=0.169  Sum_probs=128.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.. .+++++++++|+|+++++|++++|+|+.+|++|+++++++++               ...++...+.+.+
T Consensus       152 ~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  230 (341)
T cd08297         152 VTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELT  230 (341)
T ss_pred             HHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHh
Confidence            578888855 589999999999988889999999999999999999887643               2235666777777


Q ss_pred             CC-CccEEEeCCC-hhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVG-GKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g-~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++ ++|+++||.+ ......++++++++|+++.++....     .....+......++.++.+.....     .+.++++
T Consensus       231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  300 (341)
T cd08297         231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPG-----GFIPLDPFDLVLRGITIVGSLVGT-----RQDLQEA  300 (341)
T ss_pred             cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCC-----CCCCCCHHHHHhcccEEEEeccCC-----HHHHHHH
Confidence            65 8999999776 4588889999999999999985432     112344455567788877754432     3567888


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++.++.+++.+ ..+++++++++++.++.+.
T Consensus       301 ~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~  332 (341)
T cd08297         301 LEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGK  332 (341)
T ss_pred             HHHHHcCCCccee-EEEcHHHHHHHHHHHHcCC
Confidence            9999999998755 5689999999999888653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.79  E-value=2.4e-17  Score=125.92  Aligned_cols=167  Identities=21%  Similarity=0.213  Sum_probs=129.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+...+.+|++++|+| +|++|++++|+|+.+|++ |+++++++++               +..++...+++.
T Consensus       173 ~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~  251 (367)
T cd08263         173 FTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREI  251 (367)
T ss_pred             HHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHH
Confidence            67899988878889999999996 899999999999999997 8888766543               233556667776


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .++ ++|+++||+++. ....++++++++|+++.++.....    .....+...++.+++++.++....    .++.++.
T Consensus       252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  323 (367)
T cd08263         252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGG----ATAEIPITRLVRRGIKIIGSYGAR----PRQDLPE  323 (367)
T ss_pred             hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCC----CccccCHHHHhhCCeEEEecCCCC----cHHHHHH
Confidence            655 899999999987 888899999999999999754321    122344445556777777743222    1356788


Q ss_pred             HHHHHHCCCccce--eeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++++++.+++.  ++++++++++.++++.++++.
T Consensus       324 ~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  359 (367)
T cd08263         324 LVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGL  359 (367)
T ss_pred             HHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCC
Confidence            9999999999874  578899999999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.79  E-value=2.1e-17  Score=125.10  Aligned_cols=163  Identities=17%  Similarity=0.153  Sum_probs=124.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------Ccch---HHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPD---LDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~---~~~~~   62 (180)
                      ++||+++ +..++++|++++|.| +|++|++++|+||.+|++ |+++++++++               ++++   +.+.+
T Consensus       149 ~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~  226 (343)
T cd05285         149 SVGVHAC-RRAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKI  226 (343)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHH
Confidence            4677876 788999999999987 689999999999999997 8888776543               2223   25567


Q ss_pred             HhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+++ ++|+++||+|.. .+...+++++++|+++.++.....      ...+......+++.+.+.....      +.
T Consensus       227 ~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~  294 (343)
T cd05285         227 AELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPE------VTLPLSAASLREIDIRGVFRYA------NT  294 (343)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC------CccCHHHHhhCCcEEEEeccCh------HH
Confidence            777766 799999999976 788899999999999998754321      2233345566667766654322      45


Q ss_pred             HHHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhhc
Q 041355          141 LELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRVK  178 (180)
Q Consensus       141 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~~  178 (180)
                      +..+++++.++.+.  +.+.++++++++.+|++.++++.+
T Consensus       295 ~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~  334 (343)
T cd05285         295 YPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKK  334 (343)
T ss_pred             HHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCC
Confidence            77788999999875  456778999999999999888753

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.78  E-value=2.4e-17  Score=125.75  Aligned_cols=167  Identities=18%  Similarity=0.161  Sum_probs=126.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------Ccc--hHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEP--DLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~--~~~~~~~   63 (180)
                      ++||+++.+..++++|++++|+| +|++|++++|+||.+|++ |+++.+++++               .+.  ++.+.++
T Consensus       169 ~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~  247 (365)
T cd05279         169 STGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLT  247 (365)
T ss_pred             hHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHH
Confidence            57888888888999999999996 799999999999999995 6666655443               223  4556677


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhc-cCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMR-LRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|+++||+|. ..+..++++++ ++|+++.++....    .....++...+ .++.++.|.....+.  ..+.+
T Consensus       248 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~----~~~~~~~~~~~-~~~~~l~g~~~~~~~--~~~~~  320 (365)
T cd05279         248 EMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPS----GTEATLDPNDL-LTGRTIKGTVFGGWK--SKDSV  320 (365)
T ss_pred             HHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCC----CCceeeCHHHH-hcCCeEEEEeccCCc--hHhHH
Confidence            7665689999999985 58888999999 9999999876431    11223444444 566777776554331  23567


Q ss_pred             HHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ..+.+++.++.+.+  .++++++++++++|++.++++
T Consensus       321 ~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  357 (365)
T cd05279         321 PKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSG  357 (365)
T ss_pred             HHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCC
Confidence            78889999999875  477889999999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.78  E-value=4.4e-17  Score=122.25  Aligned_cols=169  Identities=18%  Similarity=0.178  Sum_probs=122.4

Q ss_pred             hHHHHHHHH--cCCCCCC-EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHc
Q 041355            3 IVGNLIILV--CSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWF   66 (180)
Q Consensus         3 ~a~~~l~~~--~~~~~g~-~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~   66 (180)
                      +||+++...  ..+.+|+ +++|+|++|++|++++|+|+.+|++++++++++++             ...+....++...
T Consensus       129 ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  208 (323)
T TIGR02823       129 TAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLE  208 (323)
T ss_pred             HHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhc
Confidence            455555333  3378898 99999989999999999999999999888776554             1111112334444


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  145 (180)
                      .+++|+++||+|++.+...+++++++|+++.+|.....     ....+...++.+++++.+...... .......+..+.
T Consensus       209 ~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (323)
T TIGR02823       209 KERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGP-----DLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLA  283 (323)
T ss_pred             CCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCC-----CccccHHHHhhcceEEEEEeccccCchhHHHHHHHHH
Confidence            44799999999988888999999999999999875321     112333455578888888664322 222344677778


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+.+. ..+++++++++|++.++++.
T Consensus       284 ~~~~~~~~~~~-~~~~~l~~~~~a~~~~~~~~  314 (323)
T TIGR02823       284 TDLKPRNLESI-TREITLEELPEALEQILAGQ  314 (323)
T ss_pred             HHhhcCCCcCc-eeeecHHHHHHHHHHHhCCC
Confidence            88888988775 45899999999999987653

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.78  E-value=3.1e-17  Score=126.05  Aligned_cols=164  Identities=20%  Similarity=0.217  Sum_probs=129.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccc-hHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEP-DLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~-~~~~~~~~   64 (180)
                      ++||+++ +..++++|++|+|+| +|++|++++|+|+..|+ +|+++++++++               ... ++.+.+++
T Consensus       171 ~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~  248 (386)
T cd08283         171 PTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRE  248 (386)
T ss_pred             hhhHHHH-hhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHH
Confidence            5789998 888999999999997 79999999999999998 68888876543               222 36667777


Q ss_pred             HcCC-CccEEEeCCChh----------------------hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhc
Q 041355           65 WFPQ-GIDIYFENVGGK----------------------MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK  121 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~----------------------~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~  121 (180)
                      .+++ ++|++|||+|++                      .+..++++++++|+++.++.....     ....++...+.+
T Consensus       249 ~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~  323 (386)
T cd08283         249 LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGT-----VNKFPIGAAMNK  323 (386)
T ss_pred             HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCC-----cCccCHHHHHhC
Confidence            7776 899999999753                      567888999999999999765421     123444456778


Q ss_pred             CcEEEeeeccchHHHHHHHHHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          122 RIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+....     ..+.+..+.+++.++.+.+  +++++++++++++|++.++++.
T Consensus       324 ~~~i~~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~  376 (386)
T cd08283         324 GLTLRMGQTH-----VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKE  376 (386)
T ss_pred             CcEEEeccCC-----chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCC
Confidence            8888876542     2456788899999999987  4668899999999999987764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.78  E-value=4.4e-17  Score=123.36  Aligned_cols=167  Identities=16%  Similarity=0.190  Sum_probs=130.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      ++||+++.+..++.++++++|+| +|++|++++|+|+..|++|+++++++++               +. .++...+.+.
T Consensus       151 ~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~  229 (345)
T cd08260         151 ATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDL  229 (345)
T ss_pred             HHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHH
Confidence            57899988888899999999999 7999999999999999999998877543               22 3555666666


Q ss_pred             cCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ..+++|++|||+|+ ..+...+++++++|+++.+|......   .....++..+..+++++.+.....     ...++.+
T Consensus       230 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  301 (345)
T cd08260         230 TGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEE---AGVALPMDRVVARELEIVGSHGMP-----AHRYDAM  301 (345)
T ss_pred             hCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCC---CccccCHHHHhhcccEEEeCCcCC-----HHHHHHH
Confidence            65589999999985 57888999999999999998654321   012334444557778887766532     3457788


Q ss_pred             HHHHHCCCccce--eeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYV--EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++.++.+.+.  +.+.++++++++|++.++++.
T Consensus       302 ~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (345)
T cd08260         302 LALIASGKLDPEPLVGRTISLDEAPDALAAMDDYA  336 (345)
T ss_pred             HHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCC
Confidence            899999998763  568899999999999888653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.78  E-value=4.5e-17  Score=123.58  Aligned_cols=164  Identities=15%  Similarity=0.172  Sum_probs=126.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+...+++|++|+|+| +|++|++++|+||.+|+ +|+++++++++               .+.++...+.+.
T Consensus       161 ~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  239 (350)
T cd08240         161 LTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKA  239 (350)
T ss_pred             hhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHH
Confidence            67899997777777899999996 79999999999999999 78888776543               223445556665


Q ss_pred             cCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .++++|+++||+|. ..+..++++|+++|+++.++.....      ...+......+++++.+.....     .+.+..+
T Consensus       240 ~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~  308 (350)
T cd08240         240 AGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE------ATLPLPLLPLRALTIQGSYVGS-----LEELREL  308 (350)
T ss_pred             hCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC------CcccHHHHhhcCcEEEEcccCC-----HHHHHHH
Confidence            55589999999985 5889999999999999998764421      1122233445777877766543     2557788


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+++....+++++++++|++.++++.
T Consensus       309 ~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~  341 (350)
T cd08240         309 VALAKAGKLKPIPLTERPLSDVNDALDDLKAGK  341 (350)
T ss_pred             HHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC
Confidence            999999999887677899999999999887653

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.78  E-value=4.9e-17  Score=122.60  Aligned_cols=167  Identities=16%  Similarity=0.160  Sum_probs=122.9

Q ss_pred             chHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--------------CcchHHHH
Q 041355            2 LIVGNLIILVCSPKK-----GEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--------------EEPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~~-----g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--------------~~~~~~~~   61 (180)
                      ++||+++.+..++++     |++|+|+|++|++|++++|+||.+ |++|+++++++++              ...++...
T Consensus       129 ~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  208 (336)
T TIGR02817       129 ITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQ  208 (336)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHH
Confidence            578899888888877     999999999999999999999998 9999999887654              12345566


Q ss_pred             HHhHcCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeecc--ch---HH
Q 041355           62 LKRWFPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAG--DY---YH  135 (180)
Q Consensus        62 ~~~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~  135 (180)
                      +++...+++|+++||+++ ..+...+++++++|+++.++...         ..+...+..+++++.+....  ..   +.
T Consensus       209 i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (336)
T TIGR02817       209 LEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPA---------ELDISPFKRKSISLHWEFMFTRSMFQTAD  279 (336)
T ss_pred             HHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcccc---------cccchhhhhcceEEEEEEeecccccchhh
Confidence            666433489999999864 58889999999999999874211         22333344454665543332  10   11


Q ss_pred             H--HHHHHHHHHHHHHCCCccceeeeecc---hhhHHHHHHHHHhhh
Q 041355          136 L--YLKFLELVIPAIREGKMVYVEDIAEG---LEKISRNCYTLKWRV  177 (180)
Q Consensus       136 ~--~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~a~~~l~~~~  177 (180)
                      .  ....++++.+++.++.+++.+.++++   ++++++|++.++++.
T Consensus       280 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  326 (336)
T TIGR02817       280 MIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGK  326 (336)
T ss_pred             hhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCC
Confidence            1  12568889999999999987655554   799999999988763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.78  E-value=2.1e-17  Score=122.93  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=125.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc----c---hHHHHHHhHcCCCccEEE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE----P---DLDAALKRWFPQGIDIYF   74 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~----~---~~~~~~~~~~~~~~d~~~   74 (180)
                      ++||+++.+.... +|++++|+|+.|++|++++|+++..|++|+++++++++.+    .   .......+..++++|+++
T Consensus       119 ~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl  197 (305)
T cd08270         119 VTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVV  197 (305)
T ss_pred             HHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEE
Confidence            5788888665555 5999999999999999999999999999999988654300    0   000000122234799999


Q ss_pred             eCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhh--cCcEEEeeeccchHHHHHHHHHHHHHHHHCCC
Q 041355           75 ENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG--KRIRLEGFLAGDYYHLYLKFLELVIPAIREGK  152 (180)
Q Consensus        75 d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  152 (180)
                      ||+|+..+...+++++++|+++.++....     .....++..+..  ++.++.++.... +....+.+..+.+++.+++
T Consensus       198 ~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  271 (305)
T cd08270         198 DSVGGPQLARALELLAPGGTVVSVGSSSG-----EPAVFNPAAFVGGGGGRRLYTFFLYD-GEPLAADLARLLGLVAAGR  271 (305)
T ss_pred             ECCCcHHHHHHHHHhcCCCEEEEEeccCC-----CcccccHHHHhcccccceEEEEEccC-HHHHHHHHHHHHHHHHCCC
Confidence            99998888999999999999999986531     112233333333  477777777654 2234567888999999999


Q ss_pred             ccceeeeecchhhHHHHHHHHHhhh
Q 041355          153 MVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       153 ~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+.++++++++++|++.++++.
T Consensus       272 i~~~~~~~~~~~~~~~a~~~~~~~~  296 (305)
T cd08270         272 LDPRIGWRGSWTEIDEAAEALLARR  296 (305)
T ss_pred             ccceeccEEcHHHHHHHHHHHHcCC
Confidence            9988778999999999999987654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08251 polyketide_synthase polyketide synthase

Probab=99.78  E-value=6e-17  Score=120.03  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=128.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++ +..++++|++++|+|+.+++|++++|+++.+|++|+++++++++               ...++...+...+
T Consensus       107 ~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~  185 (303)
T cd08251         107 LTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLT  185 (303)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHc
Confidence            5788888 57889999999999999999999999999999999998877533               2335666677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  141 (180)
                      ++ ++|.++||+++......+++++++|+++.++......    ....... .+.++..+........    .....+.+
T Consensus       186 ~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (303)
T cd08251         186 GGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKS----APSVDLS-VLSNNQSFHSVDLRKLLLLDPEFIADYQ  260 (303)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCc----cCccChh-HhhcCceEEEEehHHhhhhCHHHHHHHH
Confidence            76 8999999998888888999999999999987654211    1112222 2334444444433221    22344667


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++.+++.+|.+++..++.+++++++++++.++++.
T Consensus       261 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (303)
T cd08251         261 AEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRE  296 (303)
T ss_pred             HHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCC
Confidence            888999999999888778899999999999887754

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.78  E-value=4.8e-17  Score=122.78  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=125.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++++++ +..++++|++|||+| +|++|++++|+|+.+|++|+++.+++++               .+.++.+.+.+.+
T Consensus       146 ~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~  223 (337)
T cd08261         146 AIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELT  223 (337)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHh
Confidence            4567777 778899999999996 7999999999999999999988776543               2235566777777


Q ss_pred             CC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++ ++|+++||+|+ ..+..++++++++|+++.++....      ....+...+..+++++.+...     ...+.++.+
T Consensus       224 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  292 (337)
T cd08261         224 DGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKG------PVTFPDPEFHKKELTILGSRN-----ATREDFPDV  292 (337)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCC------CCccCHHHHHhCCCEEEEecc-----CChhhHHHH
Confidence            66 89999999986 478889999999999999875431      112333445556677666532     124567788


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .+++.+|.+++  .+..++++++++++++.++++
T Consensus       293 ~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~  326 (337)
T cd08261         293 IDLLESGKVDPEALITHRFPFEDVPEAFDLWEAP  326 (337)
T ss_pred             HHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcC
Confidence            99999999998  677889999999999998865

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.77  E-value=4.4e-17  Score=123.29  Aligned_cols=163  Identities=19%  Similarity=0.144  Sum_probs=126.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      ++||+++. ..++++|++|+|+| +|++|++++|+|+.+|+ +|+++++++++              +..++...+.+.+
T Consensus       154 ~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  231 (344)
T cd08284         154 PTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREAT  231 (344)
T ss_pred             HHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHh
Confidence            67899984 57889999999997 79999999999999997 88888655433              2335566677777


Q ss_pred             CC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++ ++|++|||+|+. .+...+++++++|+++.+|.....     .........+.+++++.+...     .....++.+
T Consensus       232 ~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  301 (344)
T cd08284         232 EGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAE-----EFPFPGLDAYNKNLTLRFGRC-----PVRSLFPEL  301 (344)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCC-----CccccHHHHhhcCcEEEEecC-----CcchhHHHH
Confidence            65 899999999964 788889999999999999865421     112334456677777764421     124568889


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .+++.++.+.+  ++.+++++++++++++.++.+
T Consensus       302 ~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~  335 (344)
T cd08284         302 LPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKR  335 (344)
T ss_pred             HHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcC
Confidence            99999999886  467889999999999987764

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.77  E-value=3.6e-17  Score=125.63  Aligned_cols=164  Identities=21%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             chHHHHHHHH-cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C---cchHHHH
Q 041355            2 LIVGNLIILV-CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E---EPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~-~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~---~~~~~~~   61 (180)
                      ++||+++... .++++|++|+|+| +|++|++++|+|+.+|+ +|+++++++++               .   ..++...
T Consensus       188 ~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~  266 (384)
T cd08265         188 SVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEK  266 (384)
T ss_pred             HHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHH
Confidence            5688888666 6899999999996 79999999999999999 78888876543               1   1256677


Q ss_pred             HHhHcCC-CccEEEeCCChh--hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHH
Q 041355           62 LKRWFPQ-GIDIYFENVGGK--MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYL  138 (180)
Q Consensus        62 ~~~~~~~-~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (180)
                      +++.+++ ++|+++||+|+.  .+..++++++++|+++.++....      ....++.....+..++.+......    .
T Consensus       267 v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~l~~~~~~~~----~  336 (384)
T cd08265         267 VMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT------TVPLHLEVLQVRRAQIVGAQGHSG----H  336 (384)
T ss_pred             HHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC------CCcccHHHHhhCceEEEEeeccCC----c
Confidence            8888876 899999999963  67888999999999999976432      112333445556667776654321    3


Q ss_pred             HHHHHHHHHHHCCCccce--eeeecchhhHHHHHHHHHhh
Q 041355          139 KFLELVIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       139 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ..+.++++++.++.+++.  ++++|+++++++|++.++++
T Consensus       337 ~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~  376 (384)
T cd08265         337 GIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER  376 (384)
T ss_pred             chHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC
Confidence            457788999999999863  67889999999999986654

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.77  E-value=6.2e-17  Score=122.26  Aligned_cols=162  Identities=19%  Similarity=0.157  Sum_probs=125.4

Q ss_pred             chHHHHHHHH-cCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC--------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILV-CSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK--------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~-~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~--------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+. ..+.+|++|+|+| +|++|++++|+|+..| ++|+++++++++              ....+...+++.
T Consensus       152 ~ta~~~l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~  230 (340)
T cd05284         152 LTAYHAVKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVREL  230 (340)
T ss_pred             HHHHHHHHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH
Confidence            5789998776 4688999999999 6679999999999999 799988887643              111255667777


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+|+ ......+++++++|+++.++....       ...+....+.+++++.+.....     ...+..
T Consensus       231 ~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  298 (340)
T cd05284         231 TGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-------GRLPTSDLVPTEISVIGSLWGT-----RAELVE  298 (340)
T ss_pred             hCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-------CccCHHHhhhcceEEEEEeccc-----HHHHHH
Confidence            765 89999999996 588889999999999999975431       1223334456788887766432     345777


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++.++.+++.+ ++++++++++|++.++++.
T Consensus       299 ~~~~l~~g~l~~~~-~~~~~~~~~~a~~~~~~~~  331 (340)
T cd05284         299 VVALAESGKVKVEI-TKFPLEDANEALDRLREGR  331 (340)
T ss_pred             HHHHHHhCCCCcce-EEEeHHHHHHHHHHHHcCC
Confidence            88999999998744 5799999999999988753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.77  E-value=1.2e-16  Score=119.27  Aligned_cols=171  Identities=25%  Similarity=0.323  Sum_probs=132.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++|+++.+...+.++++++|+|++|++|++++++++..|++|+++.+++++               ...++...+.+..
T Consensus       125 ~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (323)
T cd05276         125 FTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEAT  204 (323)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHh
Confidence            4678888777889999999999999999999999999999999988876432               2234555566665


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHLYLKF  140 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  140 (180)
                      .+ ++|+++||+|+......+.+++++|+++.++.....     ....++..++.+++++.+......     +......
T Consensus       205 ~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (323)
T cd05276         205 GGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGA-----KAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAF  279 (323)
T ss_pred             CCCCeEEEEECCchHHHHHHHHhhccCCEEEEEecCCCC-----CCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHH
Confidence            55 899999999988888889999999999999865432     112344445567888888775432     2223456


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++.+++.++.+.+..++.+++++++++++.+.++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  316 (323)
T cd05276         280 REHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNE  316 (323)
T ss_pred             HHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCC
Confidence            6778889999999888778899999999999887653

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.77  E-value=1.1e-16  Score=120.53  Aligned_cols=165  Identities=25%  Similarity=0.273  Sum_probs=133.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      ++||+++.+...+++|++++|+| +|++|++++++++..|++|+++.+++++               .. +++...+++.
T Consensus       146 ~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  224 (336)
T cd08276         146 LTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKL  224 (336)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHH
Confidence            46888887778899999999996 8999999999999999999998887543               22 4566677777


Q ss_pred             cCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +++ ++|+++||++...+..++.+++++|+++.++.....     ....+....+.+++++.+.....     ...+.++
T Consensus       225 ~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  294 (336)
T cd08276         225 TGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGF-----EAPVLLLPLLTKGATLRGIAVGS-----RAQFEAM  294 (336)
T ss_pred             cCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCC-----ccCcCHHHHhhcceEEEEEecCc-----HHHHHHH
Confidence            776 899999999988888999999999999999865432     11234456778889988887643     3467778


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++.++.+.+.+.+++++++++++++.+.++.
T Consensus       295 ~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  327 (336)
T cd08276         295 NRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGS  327 (336)
T ss_pred             HHHHHcCCcccccCcEEeHHHHHHHHHHHHhCC
Confidence            899999998887778899999999999887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.77  E-value=7.5e-17  Score=122.13  Aligned_cols=162  Identities=18%  Similarity=0.123  Sum_probs=125.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++....++++|++++|.| +|++|++++|++|.+| .+|+++.+++++               ...++...+.+.
T Consensus       152 ~ta~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~  230 (345)
T cd08286         152 PTGYECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL  230 (345)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH
Confidence            57788777788899999999987 6999999999999999 688887665433               223455566666


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+|.. .+..+++.++++|+++.+|....      ....++...+.+++++.+....      ...++.
T Consensus       231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  298 (345)
T cd08286         231 TDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGK------PVDLHLEKLWIKNITITTGLVD------TNTTPM  298 (345)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCC------CCCcCHHHHhhcCcEEEeecCc------hhhHHH
Confidence            665 899999999864 77888899999999999986431      1234555667788888765432      135777


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.++++++.+.+  .+++++++++++++++.++..
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  333 (345)
T cd08286         299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAA  333 (345)
T ss_pred             HHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhcc
Confidence            889999999876  367889999999999998865

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.77  E-value=1.4e-16  Score=120.02  Aligned_cols=166  Identities=25%  Similarity=0.345  Sum_probs=131.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++.++++++|+|+++++|++++++++..|++|+.+++++++               ...+....+.+.+
T Consensus       152 ~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
T cd08266         152 LTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELT  231 (342)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHh
Confidence            4678888788889999999999999999999999999999999988876543               2234445566655


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .+ ++|++++++|...+...+++++++|+++.++.....     ....+....+.+++++.+.....     ...+.++.
T Consensus       232 ~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  301 (342)
T cd08266         232 GKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-----EAPIDLRHVFWRQLSILGSTMGT-----KAELDEAL  301 (342)
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCC-----CCCcCHHHHhhcceEEEEEecCC-----HHHHHHHH
Confidence            54 899999999988888999999999999999865431     12334445567788887776543     34577888


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+++.+++.|+++++++|++.+.++.
T Consensus       302 ~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  333 (342)
T cd08266         302 RLVFRGKLKPVIDSVFPLEEAAEAHRRLESRE  333 (342)
T ss_pred             HHHHcCCcccceeeeEcHHHHHHHHHHHHhCC
Confidence            99999999988888999999999999887653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.77  E-value=1.1e-16  Score=119.50  Aligned_cols=169  Identities=24%  Similarity=0.233  Sum_probs=132.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++.+|++++|+|+++++|++++++++..|++|+++++++++               ...++...+++.+
T Consensus       130 ~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  209 (325)
T cd08253         130 LTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAAT  209 (325)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHc
Confidence            5688888777899999999999999999999999999999999999886543               2334556676666


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      ++ ++|+++||+|+......+++++++|+++.++....      ....+...++.++.++.+...... +....+.+..+
T Consensus       210 ~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (325)
T cd08253         210 AGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGL------RGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAI  283 (325)
T ss_pred             CCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeecCC------cCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHH
Confidence            65 89999999998888888899999999999987541      112333444667777776654322 33455678888


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .+++.++.+++....++++++++++++.+.++
T Consensus       284 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  315 (325)
T cd08253         284 AAGLADGALRPVIAREYPLEEAAAAHEAVESG  315 (325)
T ss_pred             HHHHHCCCccCccccEEcHHHHHHHHHHHHcC
Confidence            88999999988877889999999999988764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.77  E-value=1.1e-16  Score=120.12  Aligned_cols=170  Identities=17%  Similarity=0.155  Sum_probs=121.1

Q ss_pred             chHHHHHHHHcC--CC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCS--PK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~--~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~   65 (180)
                      ++||+++....+  ++ .+++|+|+|++|++|++++|+||.+|++|+++++++++             +..+......+.
T Consensus       129 ~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  208 (325)
T cd05280         129 FTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKP  208 (325)
T ss_pred             HHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHH
Confidence            356777755443  35 35799999999999999999999999999988887654             111111122233


Q ss_pred             c-CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           66 F-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        66 ~-~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      . ++++|+++||+|+..+...+++++++|+++.+|.....     ....++..++.+++++.+...... .......++.
T Consensus       209 ~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (325)
T cd05280         209 LLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGP-----ELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQK  283 (325)
T ss_pred             hcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCC-----ccccccchheeeeeEEEEEEeecCchhHHHHHHHH
Confidence            3 34799999999998999999999999999999875421     112333444467888888765432 2233456667


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++..+. .+.+..+++++++++|++.+.++.
T Consensus       284 ~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  316 (325)
T cd05280         284 LATEWKPDL-LEIVVREISLEELPEAIDRLLAGK  316 (325)
T ss_pred             HHHHHhcCC-ccceeeEecHHHHHHHHHHHhcCC
Confidence            777777774 445678899999999999988664

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.76  E-value=1.1e-16  Score=122.08  Aligned_cols=168  Identities=21%  Similarity=0.189  Sum_probs=128.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++|+|+| +|++|++++|+++..|++ |+++.+++++               +..++...+++.
T Consensus       168 ~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~  246 (363)
T cd08279         168 TTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDL  246 (363)
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHH
Confidence            57888888888999999999996 799999999999999995 8888776544               223556667777


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||++. ..+...+++++++|+++.++....    ......+...+..++..+.+..+...  ...+.+++
T Consensus       247 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  320 (363)
T cd08279         247 TDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPP----GETVSLPALELFLSEKRLQGSLYGSA--NPRRDIPR  320 (363)
T ss_pred             cCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCC----CcccccCHHHHhhcCcEEEEEEecCc--CcHHHHHH
Confidence            655 89999999994 578889999999999999976442    11223444455556666666654321  12456888


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.+++.++.+++  .+.++++++++++|++.++++
T Consensus       321 ~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~  355 (363)
T cd08279         321 LLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAG  355 (363)
T ss_pred             HHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcC
Confidence            899999999986  367889999999999988765

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.76  E-value=9.3e-17  Score=121.44  Aligned_cols=165  Identities=20%  Similarity=0.141  Sum_probs=125.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++. ..++++|++|+|+| +|++|++++|+|+..|++ |+++.+++++               ++.++.+.+++.
T Consensus       152 ~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~  229 (343)
T cd08235         152 ACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL  229 (343)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH
Confidence            46788884 45899999999997 799999999999999998 8877766543               334566667777


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+++. .+...+++++++|+++.++.....    .....+......+++.+.+.....     .+.++.
T Consensus       230 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~  300 (343)
T cd08235         230 TDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKG----STVNIDPNLIHYREITITGSYAAS-----PEDYKE  300 (343)
T ss_pred             hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCC----CCcccCHHHHhhCceEEEEEecCC-----hhhHHH
Confidence            766 799999999965 788889999999999998764421    122334455666777776655432     345777


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++.++.+++  .+..++++++++++++.++++.
T Consensus       301 ~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (343)
T cd08235         301 ALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK  336 (343)
T ss_pred             HHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC
Confidence            889999999873  5567899999999999887653

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.76  E-value=2e-16  Score=118.12  Aligned_cols=170  Identities=28%  Similarity=0.322  Sum_probs=132.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++|++++.+...+.+|++++|+|+.|++|++++++++..|+.|+++++++++               ...++...++..+
T Consensus       125 ~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~  204 (323)
T cd08241         125 GTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALT  204 (323)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHc
Confidence            4678888778889999999999988999999999999999999998887543               2235566677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  141 (180)
                      ++ ++|.+++|+|+.....++++++++|+++.++.....     .........+.+++++.+......    +......+
T Consensus       205 ~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (323)
T cd08241         205 GGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGE-----IPQIPANLLLLKNISVVGVYWGAYARREPELLRANL  279 (323)
T ss_pred             CCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccCCCC-----cCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHH
Confidence            66 899999999988888889999999999998764321     111233345667888887765432    22234677


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++.+++.++.+.+..+..+++++++++++.+.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (323)
T cd08241         280 AELFDLLAEGKIRPHVSAVFPLEQAAEALRALADR  314 (323)
T ss_pred             HHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhC
Confidence            88999999999988877889999999999987765

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.76  E-value=2e-16  Score=118.25  Aligned_cols=170  Identities=25%  Similarity=0.296  Sum_probs=133.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++|+++.+..++++|++++|+|++|++|++++++++.+|++|+++++++++               ...++...++...
T Consensus       125 ~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (325)
T TIGR02824       125 FTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAET  204 (325)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHc
Confidence            4678887788899999999999999999999999999999999988876543               2234555666666


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHLYLKF  140 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  140 (180)
                      .+ ++|++++|+|+..+..++++++++|+++.++.....     ....++..++.+++++.+......     +......
T Consensus       205 ~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (325)
T TIGR02824       205 GGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGR-----KAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAEL  279 (325)
T ss_pred             CCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecCCCC-----cCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHH
Confidence            65 899999999988888899999999999999865421     113444555578999988875442     1123456


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.++.+++.++.+.+..++.+++++++++++.+.++
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (325)
T TIGR02824       280 REHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESG  315 (325)
T ss_pred             HHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhC
Confidence            677889999999988777889999999999987765

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.76  E-value=1.1e-16  Score=121.56  Aligned_cols=162  Identities=19%  Similarity=0.137  Sum_probs=121.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +++|+++ +..++++|++|+| +|+|++|++++|+|+.+|++ ++++++++++               ...++...+.+.
T Consensus       161 ~ta~~a~-~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  238 (350)
T cd08256         161 ACALHAV-DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKEL  238 (350)
T ss_pred             HHHHHHH-HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHH
Confidence            5788887 7889999999999 55899999999999999985 5566655433               233566677777


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHH-hhcCcEEEeeeccchHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL-IGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +++ ++|++|||+|+ ..+..++++++++|+++.++.....      ....+... ..+++++.++....      ..+.
T Consensus       239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~i~~~~~~~------~~~~  306 (350)
T cd08256         239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDP------VTVDWSIIGDRKELDVLGSHLGP------YCYP  306 (350)
T ss_pred             hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCC------CccChhHhhcccccEEEEeccCc------hhHH
Confidence            766 89999999995 4788899999999999999754311      11222222 24556666655432      2477


Q ss_pred             HHHHHHHCCCccce--eeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.+++.+|.+++.  +.++++++++++|++.++++.
T Consensus       307 ~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~  343 (350)
T cd08256         307 IAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGD  343 (350)
T ss_pred             HHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCC
Confidence            78999999999873  678899999999999988764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.76  E-value=1.3e-16  Score=120.65  Aligned_cols=168  Identities=18%  Similarity=0.188  Sum_probs=126.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++. ..++++|++|+|+| +|++|++++|+|+.+|++ |+++++++++               +... ...+++.
T Consensus       146 ~ta~~~l~-~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~  222 (343)
T cd08236         146 AVALHAVR-LAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED-VEKVREL  222 (343)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcccc-HHHHHHH
Confidence            57888884 78899999999997 799999999999999996 8888876543               2223 5566666


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .++ ++|+++||+|.. .+..++++++++|+++.++.....   ..........++.++.++.++..........+.+.+
T Consensus       223 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (343)
T cd08236         223 TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD---VTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRT  299 (343)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC---cccccCCHHHHHhcCcEEEEEeeccccccchhhHHH
Confidence            665 799999999864 778889999999999999865321   111122334456778888877653322123456788


Q ss_pred             HHHHHHCCCcc--ceeeeecchhhHHHHHHHHHh
Q 041355          144 VIPAIREGKMV--YVEDIAEGLEKISRNCYTLKW  175 (180)
Q Consensus       144 ~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~  175 (180)
                      +.+++.++.+.  +.+..++++++++++++.+++
T Consensus       300 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (343)
T cd08236         300 ALDLLASGKIKVEPLITHRLPLEDGPAAFERLAD  333 (343)
T ss_pred             HHHHHHcCCCChHHheeeeecHHHHHHHHHHHHc
Confidence            89999999986  456688999999999999887

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.76  E-value=1.4e-16  Score=119.61  Aligned_cols=162  Identities=20%  Similarity=0.182  Sum_probs=120.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDI   72 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~   72 (180)
                      ++||+++. ..++++|++++|+|++|++|++++++|+.+|++|+++++.+..         +..+..+.+++.+ +++|+
T Consensus       149 ~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~~~d~  226 (325)
T cd08264         149 LTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRKDWLKEFGADEVVDYDEVEEKVKEIT-KMADV  226 (325)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHHHHHHHhCCCeeecchHHHHHHHHHh-CCCCE
Confidence            57888884 4889999999999988999999999999999998888753211         1222334455555 67999


Q ss_pred             EEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCCC
Q 041355           73 YFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGK  152 (180)
Q Consensus        73 ~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  152 (180)
                      ++||+|...+...+++++++|+++.++....     .....++..+..++.++.+.....     ++.+.++++++.+. 
T Consensus       227 vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~-  295 (325)
T cd08264         227 VINSLGSSFWDLSLSVLGRGGRLVTFGTLTG-----GEVKLDLSDLYSKQISIIGSTGGT-----RKELLELVKIAKDL-  295 (325)
T ss_pred             EEECCCHHHHHHHHHhhccCCEEEEEecCCC-----CCCccCHHHHhhcCcEEEEccCCC-----HHHHHHHHHHHHcC-
Confidence            9999998888899999999999999976421     112345555666677777655433     34566777777543 


Q ss_pred             ccceeeeecchhhHHHHHHHHHhhh
Q 041355          153 MVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       153 ~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                       ++.+.++++++++++|++.+.++.
T Consensus       296 -~~~~~~~~~~~~~~~a~~~~~~~~  319 (325)
T cd08264         296 -KVKVWKTFKLEEAKEALKELFSKE  319 (325)
T ss_pred             -CceeEEEEcHHHHHHHHHHHHcCC
Confidence             345668899999999999877653

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.75  E-value=2.1e-16  Score=118.74  Aligned_cols=163  Identities=26%  Similarity=0.290  Sum_probs=123.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~   68 (180)
                      ++||+++.. .+++++++++|+||+|++|++++++++..|++|+++++++++             +..++.+.+.+..  
T Consensus       149 ~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  225 (332)
T cd08259         149 GTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLG--  225 (332)
T ss_pred             HHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhcc--
Confidence            578888866 889999999999999999999999999999999988876543             1111233333322  


Q ss_pred             CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHH
Q 041355           69 GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAI  148 (180)
Q Consensus        69 ~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++|++++|+|.......+++++++|+++.++.....     ....+......++..+.+....     ....++++.+++
T Consensus       226 ~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  295 (332)
T cd08259         226 GADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPD-----PAPLRPGLLILKEIRIIGSISA-----TKADVEEALKLV  295 (332)
T ss_pred             CCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCC-----CcCCCHHHHHhCCcEEEEecCC-----CHHHHHHHHHHH
Confidence            799999999988888899999999999999765421     1112223333466666665422     245677889999


Q ss_pred             HCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          149 REGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       149 ~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++.+++.++++++++++++|++.++++.
T Consensus       296 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  324 (332)
T cd08259         296 KEGKIKPVIDRVVSLEDINEALEDLKSGK  324 (332)
T ss_pred             HcCCCccceeEEEcHHHHHHHHHHHHcCC
Confidence            99999988888999999999999988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.75  E-value=1.1e-16  Score=121.22  Aligned_cols=163  Identities=19%  Similarity=0.175  Sum_probs=122.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ ...++++|++|+|.| +|++|++++|+||.+|+ .|+++.+++++               ...++.+.+++.
T Consensus       154 ~ta~~~~-~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~  231 (347)
T cd05278         154 PTGFHGA-ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL  231 (347)
T ss_pred             hheeehh-hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH
Confidence            6788887 678899999999976 69999999999999997 78888665432               233455667776


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|++|||+|+ ..+...+++++++|+++.++.....     .........+.+++++.+.....     ...+++
T Consensus       232 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  301 (347)
T cd05278         232 TGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKP-----DPLPLLGEWFGKNLTFKTGLVPV-----RARMPE  301 (347)
T ss_pred             cCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCC-----cccCccchhhhceeEEEeeccCc-----hhHHHH
Confidence            665 89999999997 5888899999999999999754321     10001122345666766654322     456888


Q ss_pred             HHHHHHCCCccce--eeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.+++.++.+++.  +..+++++++++|++.++.+
T Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~  336 (347)
T cd05278         302 LLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNK  336 (347)
T ss_pred             HHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcC
Confidence            9999999999873  56789999999999988754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.75  E-value=1.8e-16  Score=121.35  Aligned_cols=168  Identities=19%  Similarity=0.145  Sum_probs=124.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      ++||+++ +..++++|++|+|.| +|++|++++|++|.+|+ +|+++++++++              .++++.+.+++.+
T Consensus       163 ~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~  240 (375)
T cd08282         163 PTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLE  240 (375)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhh
Confidence            5789998 788899999999976 79999999999999998 78887665443              2334556666666


Q ss_pred             CCCccEEEeCCChh------------hHHHHHHhhccCCEEEEEeccccccCCC-------CccccchHHHhhcCcEEEe
Q 041355           67 PQGIDIYFENVGGK------------MLDAVLLNMRLRGRIAVSSIISQYNLEK-------PEGVHNLEQLIGKRIRLEG  127 (180)
Q Consensus        67 ~~~~d~~~d~~g~~------------~~~~~~~~l~~~G~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  127 (180)
                      ++++|+++||+|..            .+..++.+++++|+++.++.........       ....++...++.++..+.+
T Consensus       241 ~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (375)
T cd08282         241 PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGT  320 (375)
T ss_pred             CCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEE
Confidence            66799999999876            3788899999999998877643211100       0122344455556665554


Q ss_pred             eeccchHHHHHHHHHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          128 FLAGDYYHLYLKFLELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ....     .++.+..+.+++.++.+++  .+.++++++++++|++.++++
T Consensus       321 ~~~~-----~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  366 (375)
T cd08282         321 GQAP-----VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKR  366 (375)
T ss_pred             ecCC-----chhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcC
Confidence            3321     2456778889999999987  378999999999999988765

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.75  E-value=2.3e-16  Score=118.89  Aligned_cols=162  Identities=23%  Similarity=0.239  Sum_probs=125.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..+++++++|+|.| +|++|++++|+|+..|++|+++++++++               ........+ ...
T Consensus       151 ~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  228 (338)
T cd08254         151 LTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKK-AAG  228 (338)
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHh
Confidence            57899988888899999999976 7999999999999999999988876543               222333444 334


Q ss_pred             CC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .+ ++|+++||+|.. .+..++++++++|+++.++....      ....+...+..++.++.+.....     ...+..+
T Consensus       229 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  297 (338)
T cd08254         229 LGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD------KLTVDLSDLIARELRIIGSFGGT-----PEDLPEV  297 (338)
T ss_pred             cCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC------CCccCHHHHhhCccEEEEeccCC-----HHHHHHH
Confidence            44 899999999855 88899999999999999976432      12234455667777777655432     3567788


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++++++.+.+. .+++++++++++++.++++.
T Consensus       298 ~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~  329 (338)
T cd08254         298 LDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGK  329 (338)
T ss_pred             HHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCC
Confidence            899999999877 57899999999999888654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.75  E-value=4.5e-16  Score=114.41  Aligned_cols=171  Identities=18%  Similarity=0.205  Sum_probs=129.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~   64 (180)
                      +++|+++.+...+++|++++|+|+.|++|++++|+++.+|++|+++++++++                 ...++.+.+++
T Consensus        94 ~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (293)
T cd05195          94 LTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILR  173 (293)
T ss_pred             HHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHH
Confidence            4677888777889999999999999999999999999999999998886432                 22345566777


Q ss_pred             HcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLYLK  139 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  139 (180)
                      .+.+ ++|.++||+|+..+...+.+++++|+++.++......    ...... ..+.+++++........    ......
T Consensus       174 ~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (293)
T cd05195         174 ATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILS----NSKLGM-RPFLRNVSFSSVDLDQLARERPELLRE  248 (293)
T ss_pred             HhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeecccccc----CCccch-hhhccCCeEEEEeHHHHhhhChHHHHH
Confidence            7665 8999999999888899999999999999998654211    011111 22344566666554332    122345


Q ss_pred             HHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          140 FLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+..+.+++.++.+.+..+..++++++.++++.++++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  286 (293)
T cd05195         249 LLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGK  286 (293)
T ss_pred             HHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCC
Confidence            67888999999999988888899999999999888664

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.75  E-value=2.5e-16  Score=119.21  Aligned_cols=162  Identities=18%  Similarity=0.225  Sum_probs=125.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +..++++|++++|.| +|++|++++|+||..|++ ++++++++++               ...++.+.+.+.
T Consensus       155 ~~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~  232 (345)
T cd08287         155 GTGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVREL  232 (345)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence            4577777 467899999999976 899999999999999995 6666665432               223456667777


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|+++||+|+. .+..++++++++|+++.++....      ...+++...+.+++++.+....     ..+.+.+
T Consensus       233 ~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  301 (345)
T cd08287         233 TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG------GVELDVRELFFRNVGLAGGPAP-----VRRYLPE  301 (345)
T ss_pred             cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC------CCccCHHHHHhcceEEEEecCC-----cHHHHHH
Confidence            766 899999999864 88899999999999998875431      1234444667888888774432     2456888


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++.++.+++  .++++++++++++|++.++++
T Consensus       302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  336 (345)
T cd08287         302 LLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDER  336 (345)
T ss_pred             HHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCC
Confidence            999999999987  467889999999999887764

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>smart00829 PKS_ER Enoylreductase

Probab=99.74  E-value=5.8e-16  Score=113.73  Aligned_cols=171  Identities=19%  Similarity=0.227  Sum_probs=127.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~   64 (180)
                      +++|+++.+...+.+|++++|+|+.|++|++++|+++.+|++|+++++++++                 ..+++.+.+.+
T Consensus        90 ~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  169 (288)
T smart00829       90 LTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILR  169 (288)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHH
Confidence            4678888788889999999999999999999999999999999999876542                 23345566666


Q ss_pred             HcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch---HHHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY---YHLYLKF  140 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  140 (180)
                      ..++ ++|.++|++|+......+++++++|+++.++......    ....+... +.+++++.+......   +......
T Consensus       170 ~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T smart00829      170 ATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRD----NSQLGMAP-FRRNVSYHAVDLDALEEGPDRIREL  244 (288)
T ss_pred             HhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCcc----ccccchhh-hcCCceEEEEEHHHhhcChHHHHHH
Confidence            6665 8999999999878888999999999999998643210    11222222 455666666554321   1123345


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +..+.+++.++.+.+...+.+++++++++++.++.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (288)
T smart00829      245 LAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGK  281 (288)
T ss_pred             HHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCC
Confidence            6778889999998876667899999999999988764

Enoylreductase in Polyketide synthases.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.74  E-value=6.5e-16  Score=115.63  Aligned_cols=171  Identities=22%  Similarity=0.296  Sum_probs=132.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++|+++.+...+.++++++|+|++|++|++++++++..|++++++++++++               ........+.+.+
T Consensus       130 ~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  209 (328)
T cd08268         130 LTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRIT  209 (328)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHh
Confidence            5688888778889999999999999999999999999999999998876532               2234455566666


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch---HHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY---YHLYLKFLE  142 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  142 (180)
                      .+ ++|++++|+++.....++.+++++|+++.++.....     .........+.+++++.+......   +......++
T Consensus       210 ~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (328)
T cd08268         210 GGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGE-----PTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIA  284 (328)
T ss_pred             CCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCC-----CCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHH
Confidence            55 899999999988888889999999999999765421     112333335778888877765421   234456777


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+.+++.++.+.+.....+++++++++++.++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (328)
T cd08268         285 FILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQ  319 (328)
T ss_pred             HHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCC
Confidence            78888889999887778899999999999887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.74  E-value=7.1e-16  Score=116.25  Aligned_cols=168  Identities=17%  Similarity=0.100  Sum_probs=125.8

Q ss_pred             chHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC--------------CcchHHHH
Q 041355            2 LIVGNLIILVCSPKK-----GEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK--------------EEPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~~-----g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~--------------~~~~~~~~   61 (180)
                      ++||+++.+..++.+     |++|+|+|++|++|++++|+++.+| ++|+++++++++              ...++...
T Consensus       130 ~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  209 (336)
T cd08252         130 LTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQ  209 (336)
T ss_pred             HHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHH
Confidence            467888878888887     9999999999999999999999999 899999887654              11245455


Q ss_pred             HHhHcCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-------
Q 041355           62 LKRWFPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-------  133 (180)
Q Consensus        62 ~~~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  133 (180)
                      ++...++++|+++||+|+ ..+..++++++++|+++.++...        ...+...+..+++++.+......       
T Consensus       210 i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (336)
T cd08252         210 LEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--------EPLDLGPLKSKSASFHWEFMFTRSMFQTPD  281 (336)
T ss_pred             HHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--------CcccchhhhcccceEEEEEeeccccccccc
Confidence            554433489999999995 58889999999999999997532        12233334456777776544221       


Q ss_pred             HHHHHHHHHHHHHHHHCCCccceee---eecchhhHHHHHHHHHhhh
Q 041355          134 YHLYLKFLELVIPAIREGKMVYVED---IAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~a~~~l~~~~  177 (180)
                      .......+.++.+++.++.+.+.+.   ..++++++++|++.++++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  328 (336)
T cd08252         282 MIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGK  328 (336)
T ss_pred             hhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCC
Confidence            1123457888999999999998643   3479999999999988764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.74  E-value=3e-16  Score=118.04  Aligned_cols=171  Identities=20%  Similarity=0.224  Sum_probs=121.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~   67 (180)
                      ++||+++.+..++.+|++++|+|++|++|++++|+++..|++|+++++ +++              ...++...  ....
T Consensus       125 ~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~  201 (331)
T cd08273         125 VTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPA--MLTP  201 (331)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhh--hccC
Confidence            578888877788999999999999999999999999999999998886 432              11122222  2233


Q ss_pred             CCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccch----------HHH--hhcCcEEEeeeccc--h
Q 041355           68 QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL----------EQL--IGKRIRLEGFLAGD--Y  133 (180)
Q Consensus        68 ~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~--~  133 (180)
                      +++|.++||+|+..+...+++++++|+++.++........  ....+.          ...  ..+.+++.+.....  .
T Consensus       202 ~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T cd08273         202 GGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQG--RRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAED  279 (331)
T ss_pred             CCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCc--cccccchhhhhhhhhhhcceeccceeEEEeechhcccC
Confidence            4799999999988888899999999999999865432110  000100          011  12233333322211  1


Q ss_pred             HHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          134 YHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +....+.+..+++++.++.+++.+.+++++++++++++.+.++.
T Consensus       280 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~  323 (331)
T cd08273         280 PKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGK  323 (331)
T ss_pred             HHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCC
Confidence            22345678889999999999988778899999999999887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.74  E-value=7.7e-16  Score=115.22  Aligned_cols=164  Identities=23%  Similarity=0.250  Sum_probs=127.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++++|+|+++++|++++++++..|++|++++++ ++               ... +...++..+
T Consensus       130 ~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~  207 (326)
T cd08272         130 ITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRET-VVEYVAEHT  207 (326)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchh-HHHHHHHhc
Confidence            4678888888999999999999999999999999999999999988876 43               112 556677777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccc------hHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGD------YYHLYLK  139 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  139 (180)
                      .+ ++|+++||+++......+.+++++|+++.++....         ........+++++.+.....      .+.....
T Consensus       208 ~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (326)
T cd08272         208 GGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGAT---------HDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGE  278 (326)
T ss_pred             CCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecCCc---------cchhhHhhhcceEEEEEcccccccccchhhHHH
Confidence            66 89999999998888888999999999999976420         11112235667766665321      1223456


Q ss_pred             HHHHHHHHHHCCCccceee-eecchhhHHHHHHHHHhh
Q 041355          140 FLELVIPAIREGKMVYVED-IAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~a~~~l~~~  176 (180)
                      .+..+.+++.++.+++.++ +.+++++++++++.++++
T Consensus       279 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  316 (326)
T cd08272         279 ILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESG  316 (326)
T ss_pred             HHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcC
Confidence            7888999999999988766 889999999999988764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.73  E-value=2.9e-16  Score=118.75  Aligned_cols=163  Identities=17%  Similarity=0.165  Sum_probs=120.1

Q ss_pred             chHHHHHHHHcCC----------CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Ccc
Q 041355            2 LIVGNLIILVCSP----------KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEP   56 (180)
Q Consensus         2 l~a~~~l~~~~~~----------~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~   56 (180)
                      ++||+++.+..++          .++++++|+|++|++|++++|+|+.+|++|++++++ ++               ...
T Consensus       130 ~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~  208 (339)
T cd08249         130 VTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTASP-KNFDLVKSLGADAVFDYHDP  208 (339)
T ss_pred             HHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEECc-ccHHHHHhcCCCEEEECCCc
Confidence            5788888666544          789999999999999999999999999999988754 33               234


Q ss_pred             hHHHHHHhHcCCCccEEEeCCCh-hhHHHHHHhhcc--CCEEEEEeccccccCCCCccccchHHHhhcCcEE---Eeeec
Q 041355           57 DLDAALKRWFPQGIDIYFENVGG-KMLDAVLLNMRL--RGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRL---EGFLA  130 (180)
Q Consensus        57 ~~~~~~~~~~~~~~d~~~d~~g~-~~~~~~~~~l~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  130 (180)
                      ++.+.+++.+++++|+++|++|+ ..+...++++++  +|+++.++......            .+....+.   .....
T Consensus       209 ~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~------------~~~~~~~~~~~~~~~~  276 (339)
T cd08249         209 DVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET------------EPRKGVKVKFVLGYTV  276 (339)
T ss_pred             hHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc------------cCCCCceEEEEEeeee
Confidence            56666777666689999999998 688999999999  99999997654210            01111222   12221


Q ss_pred             c----chHHHHHHHHHHHHHHHHCCCccceeeeecc--hhhHHHHHHHHHhhh
Q 041355          131 G----DYYHLYLKFLELVIPAIREGKMVYVEDIAEG--LEKISRNCYTLKWRV  177 (180)
Q Consensus       131 ~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~a~~~l~~~~  177 (180)
                      .    .........+..+.+++.++.+.+....+++  ++++++|++.++.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  329 (339)
T cd08249         277 FGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGK  329 (339)
T ss_pred             cccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCC
Confidence            1    1122234567788999999999987556677  999999999988654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>PRK10083 putative oxidoreductase; Provisional

Probab=99.73  E-value=4.9e-16  Score=117.36  Aligned_cols=158  Identities=14%  Similarity=0.139  Sum_probs=115.6

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHH-cCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKL-AGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~-~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++|+ +.+..++++|++|+|+| +|++|++++|+|+. +|++ ++++++++++               +++++.+.+.. 
T Consensus       148 ~a~~-~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-  224 (339)
T PRK10083        148 IAAN-VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEE-  224 (339)
T ss_pred             HHHH-HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhc-
Confidence            4564 44778899999999999 79999999999996 6995 6666665443               12233333322 


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                       .+ ++|++|||+|+. .+...+++++++|+++.+|....      ....+......+++++.+....      .+.+.+
T Consensus       225 -~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  291 (339)
T PRK10083        225 -KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE------PSEIVQQGITGKELSIFSSRLN------ANKFPV  291 (339)
T ss_pred             -CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CceecHHHHhhcceEEEEEecC------hhhHHH
Confidence             23 578999999954 88999999999999999986542      1122334444566666655431      345788


Q ss_pred             HHHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++.++.+++  .++++++++++++|++.++++
T Consensus       292 ~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~  326 (339)
T PRK10083        292 VIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKD  326 (339)
T ss_pred             HHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcC
Confidence            999999999987  477899999999999998754

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.72  E-value=1.3e-15  Score=115.01  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=122.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCCC---------------Cc-chHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKEK---------------EE-PDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~~---------------~~-~~~~~~~~~   64 (180)
                      ++||+++ +..++++|++|+|+| +|++|++++|+|+. .|++|+++++++++               .. .++...+++
T Consensus       149 ~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~  226 (338)
T PRK09422        149 VTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQE  226 (338)
T ss_pred             hHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHH
Confidence            5788888 778899999999999 79999999999998 49999999887654               11 344555666


Q ss_pred             HcCCCcc-EEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           65 WFPQGID-IYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        65 ~~~~~~d-~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      ..+ ++| +++++.++..+..++++++++|+++.++....      ....+......+..++.+.....     .+.++.
T Consensus       227 ~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  294 (338)
T PRK09422        227 KTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE------SMDLSIPRLVLDGIEVVGSLVGT-----RQDLEE  294 (338)
T ss_pred             hcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC------CceecHHHHhhcCcEEEEecCCC-----HHHHHH
Confidence            555 688 45565666688999999999999999986431      11234455566777776654332     345778


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++.+|.+.+.+. .++++++++|++.++++.
T Consensus       295 ~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~  327 (338)
T PRK09422        295 AFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGK  327 (338)
T ss_pred             HHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCC
Confidence            899999999987765 579999999999988764

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.72  E-value=8.1e-16  Score=117.72  Aligned_cols=167  Identities=17%  Similarity=0.113  Sum_probs=119.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C--cchHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E--EPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~--~~~~~~~~~   63 (180)
                      ++||+++.+..++++|++++|+| +|++|++++|+|+.+|+ +|+++++++++               .  ++++...++
T Consensus       176 ~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~  254 (373)
T cd08299         176 STGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLT  254 (373)
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHH
Confidence            57888887888999999999996 79999999999999999 79998876544               1  112455566


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhh-ccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNM-RLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|.++||+|+. .+..++..+ +++|+++.+|.....    .....+.. .+.++.++.++....+.  .+..+
T Consensus       255 ~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~  327 (373)
T cd08299         255 EMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS----QNLSINPM-LLLTGRTWKGAVFGGWK--SKDSV  327 (373)
T ss_pred             HHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCC----ceeecCHH-HHhcCCeEEEEEecCCc--cHHHH
Confidence            66656899999999964 667766655 579999999875421    11223332 23456788877664431  12334


Q ss_pred             HHHHHHHHCCCc--cceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKM--VYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~--~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++.+.++.+  ++.++++|+++++++|++.++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~  364 (373)
T cd08299         328 PKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSG  364 (373)
T ss_pred             HHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCC
Confidence            456666666654  44678999999999999987764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=2.8e-16  Score=117.72  Aligned_cols=155  Identities=22%  Similarity=0.204  Sum_probs=115.3

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHH--------HHHhHcCC-CccEEEe
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA--------ALKRWFPQ-GIDIYFE   75 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~--------~~~~~~~~-~~d~~~d   75 (180)
                      ++.+.+..++++|++|+|+| +|++|++++|+|+.+|++|+++++++++  .++..        ...+.+.+ ++|+++|
T Consensus       144 ~~~~~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~vid  220 (319)
T cd08242         144 ALEILEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEK--LALARRLGVETVLPDEAESEGGGFDVVVE  220 (319)
T ss_pred             HHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHH--HHHHHHcCCcEEeCccccccCCCCCEEEE
Confidence            33444778899999999997 8999999999999999999888876543  00100        01111333 8999999


Q ss_pred             CCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCCCc-
Q 041355           76 NVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM-  153 (180)
Q Consensus        76 ~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-  153 (180)
                      |+|+. .+...+++++++|+++..+....      ....+...+..++.++.+.....        ++++.+++.++.+ 
T Consensus       221 ~~g~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~  286 (319)
T cd08242         221 ATGSPSGLELALRLVRPRGTVVLKSTYAG------PASFDLTKAVVNEITLVGSRCGP--------FAPALRLLRKGLVD  286 (319)
T ss_pred             CCCChHHHHHHHHHhhcCCEEEEEcccCC------CCccCHHHheecceEEEEEeccc--------HHHHHHHHHcCCCC
Confidence            99875 78888999999999998654321      12344555667777777765432        5678899999999 


Q ss_pred             -cceeeeecchhhHHHHHHHHHhh
Q 041355          154 -VYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       154 -~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                       .+.+.++|+++++++|++.++++
T Consensus       287 ~~~~~~~~~~l~~~~~a~~~~~~~  310 (319)
T cd08242         287 VDPLITAVYPLEEALEAFERAAEP  310 (319)
T ss_pred             hhhceEEEEeHHHHHHHHHHHhcC
Confidence             55678999999999999988754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.72  E-value=1.3e-16  Score=104.54  Aligned_cols=112  Identities=26%  Similarity=0.380  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHcCC-CccEEEeCCC-hhhHHHHHHhhc
Q 041355           28 AVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWFPQ-GIDIYFENVG-GKMLDAVLLNMR   90 (180)
Q Consensus        28 ~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~~~-~~d~~~d~~g-~~~~~~~~~~l~   90 (180)
                      ++|++++|+||++|++|+++++++++               ++.++.+++++.+++ ++|++|||+| .+.++.++.+++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~   80 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLR   80 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhc
Confidence            68999999999999999999998876               456799999999998 9999999999 569999999999


Q ss_pred             cCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHH
Q 041355           91 LRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIR  149 (180)
Q Consensus        91 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++|+++.+|...     ......+...++.+++++.+++...     .+.++++++++.
T Consensus        81 ~~G~~v~vg~~~-----~~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~la  129 (130)
T PF00107_consen   81 PGGRIVVVGVYG-----GDPISFNLMNLMFKEITIRGSWGGS-----PEDFQEALQLLA  129 (130)
T ss_dssp             EEEEEEEESSTS-----TSEEEEEHHHHHHTTEEEEEESSGG-----HHHHHHHHHHHH
T ss_pred             cCCEEEEEEccC-----CCCCCCCHHHHHhCCcEEEEEccCC-----HHHHHHHHHHhc
Confidence            999999999876     2345677789999999999999876     233445555443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.72  E-value=2.5e-16  Score=115.75  Aligned_cols=167  Identities=23%  Similarity=0.192  Sum_probs=119.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCCC--------cchHHHHHHhHcCC-Ccc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEKE--------EPDLDAALKRWFPQ-GID   71 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~~--------~~~~~~~~~~~~~~-~~d   71 (180)
                      ++||+++ ...++++|++++|+| +|++|++++|+|+.+|++ |+++++++++.        ...........+.+ ++|
T Consensus        84 ~ta~~~~-~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d  161 (277)
T cd08255          84 ATALNGV-RDAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGAD  161 (277)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCC
Confidence            5788887 478899999999997 799999999999999998 99988765540        00011011111233 899


Q ss_pred             EEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchH-------HHHHHHHHH
Q 041355           72 IYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYY-------HLYLKFLEL  143 (180)
Q Consensus        72 ~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  143 (180)
                      ++|||++.. .+...+++++++|+++.++.....      .......+..+.+++.+.......       ....+.+++
T Consensus       162 ~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
T cd08255         162 VVIEASGSPSALETALRLLRDRGRVVLVGWYGLK------PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEE  235 (277)
T ss_pred             EEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC------ccccHHHHHhccCeEEeecccccccccccccccccccHHH
Confidence            999998854 778889999999999999875431      111112233455566655543210       112356888


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.+++.++.+++.+.++++++++++|++.++.+
T Consensus       236 ~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~  268 (277)
T cd08255         236 ALDLLAEGRLEALITHRVPFEDAPEAYRLLFED  268 (277)
T ss_pred             HHHHHHcCCccccccCccCHHHHHHHHHHHHcC
Confidence            999999999988878889999999999998765

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.72  E-value=1.6e-15  Score=114.63  Aligned_cols=163  Identities=20%  Similarity=0.130  Sum_probs=116.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEE-EEEeCCCCC---------------CcchHHH---HH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYV-VGSAGSKEK---------------EEPDLDA---AL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~v-i~~~~~~~~---------------~~~~~~~---~~   62 (180)
                      ++||+++ ...++++|++|+|+| +|++|++++|+|+.+|+++ +++.+++++               +..+...   .+
T Consensus       148 ~~a~~~~-~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~  225 (341)
T cd08262         148 AVGLHAV-RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAE  225 (341)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHH
Confidence            5688885 788999999999997 6999999999999999974 444443332               1111111   23


Q ss_pred             HhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .....+ ++|+++||+|+. .+..++++++++|+++.++.....      ........+.+++++.+.....     .+.
T Consensus       226 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~  294 (341)
T cd08262         226 LARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMES------DNIEPALAIRKELTLQFSLGYT-----PEE  294 (341)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC------CccCHHHHhhcceEEEEEeccc-----HHH
Confidence            334444 899999999974 778889999999999999865321      1122222344666666443322     235


Q ss_pred             HHHHHHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.++.+++.+|.+.+  .+.++++++++++|++.++++.
T Consensus       295 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~  333 (341)
T cd08262         295 FADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPE  333 (341)
T ss_pred             HHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCC
Confidence            778889999999975  4578899999999999988764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.71  E-value=2e-15  Score=113.22  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=117.6

Q ss_pred             cCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCC
Q 041355           12 CSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        12 ~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      .... +|++++|+|++|++|++++|+|+.+|++|+++++++++             +..+....++....+++|.++||+
T Consensus       141 ~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  220 (324)
T cd08288         141 HGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTV  220 (324)
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECC
Confidence            3444 67899999999999999999999999999998877654             111222234445555789999999


Q ss_pred             ChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHHHHHHHCCCccce
Q 041355           78 GGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELVIPAIREGKMVYV  156 (180)
Q Consensus        78 g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~  156 (180)
                      ++..+...+..++.+|+++.+|.....     ....++..++.+++++.+.+.... .....+.+..+.+++.++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~g~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (324)
T cd08288         221 GGHTLANVLAQTRYGGAVAACGLAGGA-----DLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEAL  295 (324)
T ss_pred             cHHHHHHHHHHhcCCCEEEEEEecCCC-----CCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcccc
Confidence            987777888889999999999875321     112334445578888888764322 12234577788889999988774


Q ss_pred             eeeecchhhHHHHHHHHHhhh
Q 041355          157 EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       157 ~~~~~~~~~~~~a~~~l~~~~  177 (180)
                       .+.++++++++|++.++++.
T Consensus       296 -~~~~~~~~~~~a~~~~~~~~  315 (324)
T cd08288         296 -TREIPLADVPDAAEAILAGQ  315 (324)
T ss_pred             -ceeecHHHHHHHHHHHhcCC
Confidence             67899999999999887654

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.71  E-value=1.8e-15  Score=114.34  Aligned_cols=162  Identities=19%  Similarity=0.117  Sum_probs=122.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC--------cc--hHH-HHHHhHcCCCc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------EP--DLD-AALKRWFPQGI   70 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~--------~~--~~~-~~~~~~~~~~~   70 (180)
                      ++||+++. ...+++|++++|.| .|++|++++|+++.+|++|+++++++++.        +.  +.. ....+...+++
T Consensus       156 ~ta~~~~~-~~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~  233 (337)
T cd05283         156 ITVYSPLK-RNGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSL  233 (337)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCc
Confidence            46788874 45689999999977 89999999999999999999988876540        00  000 01111223489


Q ss_pred             cEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHH
Q 041355           71 DIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIR  149 (180)
Q Consensus        71 d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      |++|||+|.. .....+++++++|+++.++.....      ...++..++.+++++.+.....     .+.++.+++++.
T Consensus       234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~  302 (337)
T cd05283         234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEP------LPVPPFPLIFGRKSVAGSLIGG-----RKETQEMLDFAA  302 (337)
T ss_pred             eEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCC------CccCHHHHhcCceEEEEecccC-----HHHHHHHHHHHH
Confidence            9999999987 588899999999999999875421      1344555667888888877654     345778889999


Q ss_pred             CCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          150 EGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       150 ~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++.+ ++++++++++|++.++++.
T Consensus       303 ~~~l~~~~-~~~~~~~~~~a~~~~~~~~  329 (337)
T cd05283         303 EHGIKPWV-EVIPMDGINEALERLEKGD  329 (337)
T ss_pred             hCCCccce-EEEEHHHHHHHHHHHHcCC
Confidence            99998865 6799999999999988763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.71  E-value=1.4e-15  Score=114.95  Aligned_cols=163  Identities=18%  Similarity=0.246  Sum_probs=118.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++|++++  ...+.+|++++|.| +|++|++++|+++.+|++ |+++.+++++               ...++.+.+.+.
T Consensus       149 ~~a~~~~--~~~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~  225 (340)
T TIGR00692       149 GNAVHTV--LAGPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL  225 (340)
T ss_pred             HHHHHHH--HccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHh
Confidence            3456655  34568999999976 799999999999999996 8777554332               233556667666


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchH-HHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-QLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +++ ++|+++||+|++ .+...+++++++|+++.++.....      ...+.. .+..+++++.+.....    ..+.+.
T Consensus       226 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  295 (340)
T TIGR00692       226 TDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGK------VTIDFTNKVIFKGLTIYGITGRH----MFETWY  295 (340)
T ss_pred             cCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCC------cccchhhhhhhcceEEEEEecCC----chhhHH
Confidence            665 899999998864 788899999999999999865321      111122 4556677776654211    124567


Q ss_pred             HHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.++++++.++  +.+.+.+++++++++++.++++.
T Consensus       296 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~  332 (340)
T TIGR00692       296 TVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQ  332 (340)
T ss_pred             HHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCC
Confidence            889999999987  55678899999999999887653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.70  E-value=3.9e-15  Score=112.21  Aligned_cols=161  Identities=21%  Similarity=0.234  Sum_probs=118.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +++++++ +..++++|++|+|+| +|++|++++|+||..|++ |+++.+++++               ...+.... +..
T Consensus       146 ~~a~~~l-~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~  222 (334)
T cd08234         146 SCAVHGL-DLLGIKPGDSVLVFG-AGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQ-KED  222 (334)
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHH-HHh
Confidence            4677777 778999999999997 699999999999999997 7777766543               11222222 222


Q ss_pred             cCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .++++|+++||+|. ..+...+++++++|+++.++.....    .....+....+.+++++.+....      ...++++
T Consensus       223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  292 (334)
T cd08234         223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPD----ARVSISPFEIFQKELTIIGSFIN------PYTFPRA  292 (334)
T ss_pred             cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCC----CCcccCHHHHHhCCcEEEEeccC------HHHHHHH
Confidence            23489999999985 4788889999999999999865421    11223334444567777776542      2347788


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKW  175 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~  175 (180)
                      .+++.++.+++  .++.++++++++++++.++.
T Consensus       293 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~  325 (334)
T cd08234         293 IALLESGKIDVKGLVSHRLPLEEVPEALEGMRS  325 (334)
T ss_pred             HHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc
Confidence            89999999875  35678999999999998876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.69  E-value=8.2e-15  Score=110.27  Aligned_cols=174  Identities=24%  Similarity=0.304  Sum_probs=127.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +++|+++.+..++++|++++|+|++|++|++++|+++.. +..++...+ +++               ...++...++..
T Consensus       124 ~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  202 (337)
T cd08275         124 LTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTAS-ASKHEALKENGVTHVIDYRTQDYVEEVKKI  202 (337)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEeCC-HHHHHHHHHcCCcEEeeCCCCcHHHHHHHH
Confidence            568888888889999999999999999999999999998 433332221 111               223556667766


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-----------CccccchHHHhhcCcEEEeeeccch-
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-----------PEGVHNLEQLIGKRIRLEGFLAGDY-  133 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-  133 (180)
                      +++++|+++||+|+.....++++++++|+++.+|.....+...           ......+...+.+++++.++..... 
T Consensus       203 ~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (337)
T cd08275         203 SPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLF  282 (337)
T ss_pred             hCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhh
Confidence            6568999999999888888999999999999998654321000           0011222455778888888765321 


Q ss_pred             --HHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          134 --YHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       134 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                        .......+.++.+++.++.+.+..+..+++++++++++.+.++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (337)
T cd08275         283 EERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSR  327 (337)
T ss_pred             hChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcC
Confidence              1122346788889999999988877889999999999988765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.69  E-value=5.6e-15  Score=109.68  Aligned_cols=157  Identities=21%  Similarity=0.224  Sum_probs=120.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +++++++.+..++.+|++++|+|++|++|++++++++..|++|+++++++ +               ...++..    ..
T Consensus       130 ~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~----~~  204 (309)
T cd05289         130 LTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFER----AA  204 (309)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhh----cc
Confidence            46788887777799999999999889999999999999999999887755 2               1111111    22


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .+ ++|.++||+|+.....++++++++|+++.++.....      ..    ..+.++.++........    ...+.++.
T Consensus       205 ~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~----~~~~~~~~~~~~~~~~~----~~~~~~~~  270 (309)
T cd05289         205 APGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPA------EQ----AAKRRGVRAGFVFVEPD----GEQLAELA  270 (309)
T ss_pred             CCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcc------hh----hhhhccceEEEEEeccc----HHHHHHHH
Confidence            33 799999999988888999999999999999764310      00    33445666665554331    45788899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.++.+.+.+++.+++++++++++.+..+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  302 (309)
T cd05289         271 ELVEAGKLRPVVDRVFPLEDAAEAHERLESGH  302 (309)
T ss_pred             HHHHCCCEEEeeccEEcHHHHHHHHHHHHhCC
Confidence            99999999888888999999999999887654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.68  E-value=6.2e-15  Score=112.52  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=118.3

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC-----------------CcchHHHHHHh
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----------------EEPDLDAALKR   64 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~-----------------~~~~~~~~~~~   64 (180)
                      ++|+++ +..++.+|++++|+| +|++|++++|+|+.+|++ |+++.+++++                 ..+++.+.+.+
T Consensus       169 ~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (364)
T PLN02702        169 VGVHAC-RRANIGPETNVLVMG-AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEE  246 (364)
T ss_pred             HHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHH
Confidence            466776 778899999999997 799999999999999995 5555554332                 11344455544


Q ss_pred             H---cCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           65 W---FPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        65 ~---~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .   .++++|++|||+|+ ..+..++++++++|+++.++....      ...........+++++.++....      ..
T Consensus       247 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~~------~~  314 (364)
T PLN02702        247 IQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN------EMTVPLTPAAAREVDVVGVFRYR------NT  314 (364)
T ss_pred             HhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CCcccHHHHHhCccEEEEeccCh------HH
Confidence            3   23489999999994 588999999999999999986431      11234456677888888765422      34


Q ss_pred             HHHHHHHHHCCCcc--ceeeeecch--hhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMV--YVEDIAEGL--EKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~--~~~~~~~~~--~~~~~a~~~l~~~~  177 (180)
                      ++.+++++.++.+.  +.++++|++  +++++|++.++++.
T Consensus       315 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~  355 (364)
T PLN02702        315 WPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGG  355 (364)
T ss_pred             HHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCC
Confidence            67788999999885  456777554  89999999887653

>cd05281 TDH Threonine dehydrogenase

Probab=99.68  E-value=6e-15  Score=111.62  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=116.5

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++++++.  ...++|++|+|.| +|++|++++|+++.+|+ +|+++.+++++               ...++. .+++..
T Consensus       152 ~a~~~~~--~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~  227 (341)
T cd05281         152 NAVHTVL--AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV-EVKSVT  227 (341)
T ss_pred             HHHHHHH--hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHH-HHHHHc
Confidence            4555553  3457899999987 69999999999999999 78888555433               223455 666666


Q ss_pred             CC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccc-hHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN-LEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      ++ ++|++|||+|+. ....++++|+++|+++.++.....      ...+ ......+++.+.+.....    ..+.+.+
T Consensus       228 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  297 (341)
T cd05281         228 DGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGP------VDIDLNNLVIFKGLTVQGITGRK----MFETWYQ  297 (341)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCC------cccccchhhhccceEEEEEecCC----cchhHHH
Confidence            65 899999999865 778889999999999998764321      1111 123555677776655322    1234677


Q ss_pred             HHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          144 VIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       144 ~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.+++.++.+.  +.+..+++++++++|++.++++
T Consensus       298 ~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~  332 (341)
T cd05281         298 VSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSG  332 (341)
T ss_pred             HHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcC
Confidence            88999999886  4566789999999999998765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.67  E-value=1.8e-14  Score=107.88  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=121.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++|++++.+..++++|++++|+|+++++|++++++++..|++|+++.+ +++               ...++...+++..
T Consensus       127 ~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  205 (325)
T cd08271         127 LTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTCS-KRNFEYVKSLGADHVIDYNDEDVCERIKEIT  205 (325)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEEc-HHHHHHHHHcCCcEEecCCCccHHHHHHHHc
Confidence            467888878888999999999998899999999999999999887763 322               2224555677666


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch--------HHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY--------YHLY  137 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  137 (180)
                      .+ ++|.+++|+++......+++++++|+++.++.....       . . ...+.+.+.+........        ....
T Consensus       206 ~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (325)
T cd08271         206 GGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDA-------S-P-DPPFTRALSVHEVALGAAHDHGDPAAWQDL  276 (325)
T ss_pred             CCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCC-------c-c-hhHHhhcceEEEEEecccccccchhhHHHH
Confidence            65 899999999988777789999999999998643321       0 1 112233344333322111        1234


Q ss_pred             HHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          138 LKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++.+.++.+++.++.+.+...+.++++++.++++.+.++
T Consensus       277 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~  315 (325)
T cd08271         277 RYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDR  315 (325)
T ss_pred             HHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcC
Confidence            556788899999999988766889999999999988765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.67  E-value=9.3e-15  Score=110.56  Aligned_cols=152  Identities=18%  Similarity=0.246  Sum_probs=113.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhHcCC-CccEEEeC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..+|++|+|.| +|++|++++|+|+.+|+ .|+++.+++++               ++.++.+.+++.+.+ ++|++|||
T Consensus       161 ~~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~  239 (341)
T PRK05396        161 DLVGEDVLITG-AGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEM  239 (341)
T ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence            46899999977 79999999999999999 67777655432               234566667777665 89999999


Q ss_pred             CChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCC-Ccc
Q 041355           77 VGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREG-KMV  154 (180)
Q Consensus        77 ~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~  154 (180)
                      .|+. .+..++.+++++|+++.++.....      ...+...+..+++++.++.....    .+.+..+.+++.++ ++.
T Consensus       240 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~  309 (341)
T PRK05396        240 SGAPSAFRQMLDNMNHGGRIAMLGIPPGD------MAIDWNKVIFKGLTIKGIYGREM----FETWYKMSALLQSGLDLS  309 (341)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEecCCCC------CcccHHHHhhcceEEEEEEccCc----cchHHHHHHHHHcCCChh
Confidence            9865 788899999999999999865421      12234566677777777643221    23355677888888 566


Q ss_pred             ceeeeecchhhHHHHHHHHHhh
Q 041355          155 YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       155 ~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +.+.++++++++++|++.++++
T Consensus       310 ~~~~~~~~l~~~~~a~~~~~~~  331 (341)
T PRK05396        310 PIITHRFPIDDFQKGFEAMRSG  331 (341)
T ss_pred             HheEEEEeHHHHHHHHHHHhcC
Confidence            6677889999999999988765

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.67  E-value=4e-15  Score=113.03  Aligned_cols=175  Identities=17%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             chHHHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHHHHc-CC-EEEEEeCCCCC--------------Ccch---HHHH
Q 041355            2 LIVGNLIILVC-SPKKGEYVYVSAASGAVGQLVGQFAKLA-GC-YVVGSAGSKEK--------------EEPD---LDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~-~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~-~vi~~~~~~~~--------------~~~~---~~~~   61 (180)
                      ++||+++.+.. ++++|++++|+|+++++|++++|+|+.+ +. .++++.+.++.              .+.+   +...
T Consensus       136 ~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~  215 (352)
T cd08247         136 GTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKP  215 (352)
T ss_pred             HHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeChhHHHHHHHhCCCEEEecCCCcccchHHH
Confidence            47888887766 7999999999999999999999999987 55 67776654321              1222   3334


Q ss_pred             HHhH-c-CCCccEEEeCCCh-hhHHHHHHhhc---cCCEEEEEeccccccCCCCc------cccchHHHhhcCcEEEeee
Q 041355           62 LKRW-F-PQGIDIYFENVGG-KMLDAVLLNMR---LRGRIAVSSIISQYNLEKPE------GVHNLEQLIGKRIRLEGFL  129 (180)
Q Consensus        62 ~~~~-~-~~~~d~~~d~~g~-~~~~~~~~~l~---~~G~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  129 (180)
                      +.+. + ++++|++|||+|+ .....++++++   ++|+++.++.....+.....      ..... ..+.+...+....
T Consensus       216 ~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  294 (352)
T cd08247         216 VLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANA-RKLFGSLGLWSYN  294 (352)
T ss_pred             HHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhh-hhhhhhhcCCCcc
Confidence            4333 4 2389999999998 47788899999   99999987532211000000      00000 1112222222111


Q ss_pred             ccch-HHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          130 AGDY-YHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       130 ~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .... .....+.+..+.+++.++.+++.+.++++++++++|++.++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~  343 (352)
T cd08247         295 YQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNR  343 (352)
T ss_pred             eEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCC
Confidence            1100 00012567788899999999988778999999999999988653

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.67  E-value=2.6e-15  Score=113.79  Aligned_cols=170  Identities=18%  Similarity=0.171  Sum_probs=115.0

Q ss_pred             chHHHHHHHHcCCCC----CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHH
Q 041355            2 LIVGNLIILVCSPKK----GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~----g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~   63 (180)
                      ++||+++.+...+.+    |++++|+|++|++|++++++++.+|++|+++.+++..              ...++...+.
T Consensus       144 ~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~  223 (350)
T cd08248         144 LTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELT  223 (350)
T ss_pred             HHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCcchHHHHHHhCCceEEECCChhHHHHHH
Confidence            567888877777754    9999999999999999999999999999888765321              1112333332


Q ss_pred             hHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-Cc--cccc-hHHHhh-------cCcEEEeeeccc
Q 041355           64 RWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-PE--GVHN-LEQLIG-------KRIRLEGFLAGD  132 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-~~--~~~~-~~~~~~-------~~~~~~~~~~~~  132 (180)
                      .  .+++|+++||+|+.....++++++++|+++.++......... ..  .... ...+..       +.....+.... 
T Consensus       224 ~--~~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (350)
T cd08248         224 E--RGKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFS-  300 (350)
T ss_pred             h--cCCCCEEEECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEEC-
Confidence            2  137999999999888899999999999999997543211000 00  0000 000000       00001011111 


Q ss_pred             hHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          133 YYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                         .....+..+++++.+|.+.+.+++++++++++++++.+.++.
T Consensus       301 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  342 (350)
T cd08248         301 ---PSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGH  342 (350)
T ss_pred             ---CCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCC
Confidence               124568889999999999888888999999999999887653

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=2.1e-14  Score=107.20  Aligned_cols=139  Identities=24%  Similarity=0.319  Sum_probs=107.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~   65 (180)
                      ++||+++....++++|++|+|.| +|++|++++|+|+..|++|++++.+.+.                ...++...+.+.
T Consensus       150 ~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  228 (306)
T cd08258         150 AVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEI  228 (306)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHH
Confidence            56889988888999999999976 7999999999999999998877443221                123455666666


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .++ ++|+++||+|+ ..+...+++++++|+++.++....     ....++...++.+++++.|++...     ++.+++
T Consensus       229 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~  298 (306)
T cd08258         229 TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGP-----LAASIDVERIIQKELSVIGSRSST-----PASWET  298 (306)
T ss_pred             cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC-----CCcccCHHHHhhcCcEEEEEecCc-----hHhHHH
Confidence            665 89999999975 478888999999999999987542     123445566778999999998865     345777


Q ss_pred             HHHHHHCC
Q 041355          144 VIPAIREG  151 (180)
Q Consensus       144 ~~~~~~~g  151 (180)
                      +++++++|
T Consensus       299 ~~~~~~~~  306 (306)
T cd08258         299 ALRLLASG  306 (306)
T ss_pred             HHHHHhcC
Confidence            88887764

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.65  E-value=1.9e-14  Score=108.71  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=115.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-------------~~~~~~~~~~~~~~   67 (180)
                      ++||+++.+...+ +|++|+|.| +|++|++++|+|+.+|+ .|+++++++++             +..+  ..+.+...
T Consensus       152 ~~a~~~l~~~~~~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~--~~~~~~~~  227 (339)
T cd08232         152 AVALHAVNRAGDL-AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR--DPLAAYAA  227 (339)
T ss_pred             HHHHHHHHhcCCC-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc--hhhhhhhc
Confidence            5788888665556 999999977 79999999999999999 78888776543             0000  00222222


Q ss_pred             --CCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           68 --QGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        68 --~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                        +++|+++||+|+ ..+...+++|+++|+++.++....      ....++...+.+++++.+....      ...++++
T Consensus       228 ~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  295 (339)
T cd08232         228 DKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGG------PVPLPLNALVAKELDLRGSFRF------DDEFAEA  295 (339)
T ss_pred             cCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CccCcHHHHhhcceEEEEEecC------HHHHHHH
Confidence              369999999995 478889999999999999975331      1122334445677777666532      2357788


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ++++.++.+++  .+.++++++++++|++.+..+
T Consensus       296 ~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~  329 (339)
T cd08232         296 VRLLAAGRIDVRPLITAVFPLEEAAEAFALAADR  329 (339)
T ss_pred             HHHHHcCCCCchhheeEEecHHHHHHHHHHHHhC
Confidence            89999998864  467889999999999988754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.65  E-value=2.9e-14  Score=107.30  Aligned_cols=158  Identities=22%  Similarity=0.192  Sum_probs=117.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.. .++++|++|+|+| +|++|++++++|+..|++|+++++++++               ...+.   ... .
T Consensus       149 ~ta~~~l~~-~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~  222 (330)
T cd08245         149 ITVYSALRD-AGPRPGERVAVLG-IGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELD---EQA-A  222 (330)
T ss_pred             HHHHHHHHh-hCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcch---HHh-c
Confidence            568888844 7899999999997 6889999999999999999998887654               00011   111 2


Q ss_pred             CCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .+++|+++||++. .....++++++++|+++.++.....     ....+...+..++.++.+.....     ...+++++
T Consensus       223 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  292 (330)
T cd08245         223 AGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESP-----PFSPDIFPLIMKRQSIAGSTHGG-----RADLQEAL  292 (330)
T ss_pred             cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCC-----ccccchHHHHhCCCEEEEeccCC-----HHHHHHHH
Confidence            2479999999875 4788889999999999999764321     11122344666777777776543     34677788


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++.++.+.+ ..+++++++++++++.++++
T Consensus       293 ~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~  322 (330)
T cd08245         293 DFAAEGKVKP-MIETFPLDQANEAYERMEKG  322 (330)
T ss_pred             HHHHcCCCcc-eEEEEcHHHHHHHHHHHHcC
Confidence            9999999986 34679999999999988765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.64  E-value=1.4e-14  Score=108.98  Aligned_cols=160  Identities=18%  Similarity=0.089  Sum_probs=115.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH--------HHhHcCCCccEE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA--------LKRWFPQGIDIY   73 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~   73 (180)
                      ++||+++ +..++++|++++|+| +|++|++++|+++..|++|+++++++++  .+....        .......++|++
T Consensus       154 ~ta~~~~-~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~vD~v  229 (329)
T cd08298         154 IIGYRAL-KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEH--QELARELGADWAGDSDDLPPEPLDAA  229 (329)
T ss_pred             HHHHHHH-HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHH--HHHHHHhCCcEEeccCccCCCcccEE
Confidence            5788988 889999999999997 8999999999999999999999887653  011110        001122379999


Q ss_pred             EeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHHCCC
Q 041355           74 FENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGK  152 (180)
Q Consensus        74 ~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  152 (180)
                      ++|.+. ..+...+++++++|+++.++....     .....+.. .+..+..+.+.....     .+.+..+.+++.++.
T Consensus       230 i~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~~~  298 (329)
T cd08298         230 IIFAPVGALVPAALRAVKKGGRVVLAGIHMS-----DIPAFDYE-LLWGEKTIRSVANLT-----RQDGEEFLKLAAEIP  298 (329)
T ss_pred             EEcCCcHHHHHHHHHHhhcCCEEEEEcCCCC-----CCCccchh-hhhCceEEEEecCCC-----HHHHHHHHHHHHcCC
Confidence            998664 488889999999999998874221     11112222 234555555554322     345777889999999


Q ss_pred             ccceeeeecchhhHHHHHHHHHhhh
Q 041355          153 MVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       153 ~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++. .++++++++++|++.++++.
T Consensus       299 l~~~-~~~~~~~~~~~a~~~~~~~~  322 (329)
T cd08298         299 IKPE-VETYPLEEANEALQDLKEGR  322 (329)
T ss_pred             CCce-EEEEeHHHHHHHHHHHHcCC
Confidence            9875 57899999999999988753

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.63  E-value=4.6e-14  Score=105.44  Aligned_cols=164  Identities=26%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++++|+|++|++|++++++++..|++|++++++ ++               ...++.   +..+
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~---~~~~  204 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFV---ALTA  204 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcc---hhcc
Confidence            4688888777779999999999988999999999999999999988765 22               111111   2233


Q ss_pred             CC-CccEEEeCCChh--hHHHHHHhhccCCEEEEEeccccccCCCCccccc--hHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGK--MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN--LEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      .+ ++|+++||+|+.  .....+..++++|+++.++......    .....  ..........+.......    ..+.+
T Consensus       205 ~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  276 (319)
T cd08267         205 GGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGL----LLVLLLLPLTLGGGGRRLKFFLAKP----NAEDL  276 (319)
T ss_pred             CCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccc----cccccccchhhccccceEEEEEecC----CHHHH
Confidence            33 799999999853  3333333499999999998654211    00100  001111112222222211    14568


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++.+++.++.+.+.++++++++++++|++.+.++.
T Consensus       277 ~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~  312 (319)
T cd08267         277 EQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGR  312 (319)
T ss_pred             HHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCC
Confidence            888999999999888888999999999999887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.54  E-value=4.3e-13  Score=97.84  Aligned_cols=124  Identities=32%  Similarity=0.397  Sum_probs=95.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.....+++|++|+|+|+++ +|++++|+++..|.+|+++++++++               ...+....+. ..
T Consensus       120 ~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~  197 (271)
T cd05188         120 ATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR-LT  197 (271)
T ss_pred             HHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH-Hh
Confidence            57888987777779999999999766 9999999999999999999887543               2223344444 33


Q ss_pred             C-CCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccc
Q 041355           67 P-QGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGD  132 (180)
Q Consensus        67 ~-~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (180)
                      . +++|++++|++. ......+++++++|+++.++.....     .........+.+++++.++....
T Consensus       198 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         198 GGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGG-----PPLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCC-----CCcccHHHHHhcceEEEEeecCC
Confidence            3 389999999998 6888899999999999999875532     11112345677888988887755

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.44  E-value=5.2e-12  Score=96.81  Aligned_cols=158  Identities=13%  Similarity=0.075  Sum_probs=114.2

Q ss_pred             HHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc--chHHHHHHhHcCCCccEEEeC
Q 041355            4 VGNLIILVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE--PDLDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus         4 a~~~l~~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~--~~~~~~~~~~~~~~~d~~~d~   76 (180)
                      +|.++.+..++ -+|++|+|.| .|++|+.+++.+|.+|++|+++..++.+    ..  .+.. ...+.. .++|++++|
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v-~~aDVVI~a  264 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAV-KEGDIFVTT  264 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHH-cCCCEEEEC
Confidence            34556565554 6899999999 9999999999999999999998877655    00  0000 011111 258999999


Q ss_pred             CChh-hHHHH-HHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH--HHHHHHHCCC
Q 041355           77 VGGK-MLDAV-LLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE--LVIPAIREGK  152 (180)
Q Consensus        77 ~g~~-~~~~~-~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~  152 (180)
                      +|.. .+... +..++++|+++++|..        ...+++..+..+++++.+......    ...++  ..+.++.+|.
T Consensus       265 tG~~~~i~~~~l~~mk~GgilvnvG~~--------~~eId~~~L~~~el~i~g~~~~~~----~~~~~~g~aI~LLa~Gr  332 (413)
T cd00401         265 TGNKDIITGEHFEQMKDGAIVCNIGHF--------DVEIDVKGLKENAVEVVNIKPQVD----RYELPDGRRIILLAEGR  332 (413)
T ss_pred             CCCHHHHHHHHHhcCCCCcEEEEeCCC--------CCccCHHHHHhhccEEEEccCCcc----eEEcCCcchhhhhhCcC
Confidence            9977 56654 8999999999999853        124666777788888887766431    11233  6789999998


Q ss_pred             c---cceeeee-----cchh-hHHHHHHHHHhh
Q 041355          153 M---VYVEDIA-----EGLE-KISRNCYTLKWR  176 (180)
Q Consensus       153 ~---~~~~~~~-----~~~~-~~~~a~~~l~~~  176 (180)
                      +   .+.+++.     ++|+ ++.++++.++++
T Consensus       333 lvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~  365 (413)
T cd00401         333 LVNLGCATGHPSFVMSNSFTNQVLAQIELWTNR  365 (413)
T ss_pred             CCCCcccCCCccceechhHHHHHHHHHHHHhcC
Confidence            8   4456677     8898 999999988765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.30  E-value=2.8e-12  Score=83.64  Aligned_cols=99  Identities=21%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             CCCccEEEeCCC--hhhH-HHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchH--HHHHHHH
Q 041355           67 PQGIDIYFENVG--GKML-DAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYY--HLYLKFL  141 (180)
Q Consensus        67 ~~~~d~~~d~~g--~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  141 (180)
                      .+++|++|||+|  ++.+ ..++++| ++|+++.++. .          ............+.+.......  ....+.+
T Consensus        17 ~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   84 (127)
T PF13602_consen   17 PGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-D----------LPSFARRLKGRSIRYSFLFSVDPNAIRAEAL   84 (127)
T ss_dssp             TS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-H----------HHHHHHHHHCHHCEEECCC-H--HHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-c----------ccchhhhhcccceEEEEEEecCCCchHHHHH
Confidence            458999999999  6633 6667788 9999999863 0          0111111112222222222111  2245679


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+++++|+++|.+.++||++++.+|++.++++.
T Consensus        85 ~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~  120 (127)
T PF13602_consen   85 EELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGH  120 (127)
T ss_dssp             HHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT-
T ss_pred             HHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.23  E-value=2.4e-10  Score=89.84  Aligned_cols=133  Identities=14%  Similarity=0.020  Sum_probs=90.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------C-------c-------------chHHHHHHh
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------E-------E-------------PDLDAALKR   64 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~-------~-------------~~~~~~~~~   64 (180)
                      ..++++|+|.| +|++|+++++.||.+|++|++++.++++         +       +             +++.+..++
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            35799999999 9999999999999999999999988765         0       0             012222222


Q ss_pred             H-cC--CCccEEEeCCChh------h-HHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhh-cCcEEEeeeccch
Q 041355           65 W-FP--QGIDIYFENVGGK------M-LDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG-KRIRLEGFLAGDY  133 (180)
Q Consensus        65 ~-~~--~~~d~~~d~~g~~------~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  133 (180)
                      . .+  +++|++|+|++.+      . .+.+++.++++|+++.++...+.+   -........++. +++++.|.+..+ 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~---~e~t~~~~~v~~~~gVti~Gv~n~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGN---CELTVPGEVVVTDNGVTIIGYTDLP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCC---cccccCccceEeECCEEEEEeCCCc-
Confidence            2 22  3799999999853      3 488999999999999998753221   011222234554 788888876422 


Q ss_pred             HHHHHHHHHHHHHHHHCCCccc
Q 041355          134 YHLYLKFLELVIPAIREGKMVY  155 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~~~  155 (180)
                          .++.....+++.++.+..
T Consensus       317 ----~~~p~~As~lla~~~i~l  334 (509)
T PRK09424        317 ----SRLPTQSSQLYGTNLVNL  334 (509)
T ss_pred             ----hhHHHHHHHHHHhCCccH
Confidence                233444677777766543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.56  E-value=1.2e-06  Score=67.77  Aligned_cols=97  Identities=16%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             HHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc------chHHHHHHhHcCCCccEEEeC
Q 041355            4 VGNLIILVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------PDLDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus         4 a~~~l~~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~d~   76 (180)
                      +|.++.+..++. .|++++|.| .|.+|..+++.++.+|++|+++.+++.+..      .+.. .+.+.. .++|++++|
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal-~~aDVVI~a  274 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAA-ELGDIFVTA  274 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHH-hCCCEEEEC
Confidence            456665554554 899999999 899999999999999999999887765410      0110 112221 268999999


Q ss_pred             CChh-hHH-HHHHhhccCCEEEEEecccc
Q 041355           77 VGGK-MLD-AVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        77 ~g~~-~~~-~~~~~l~~~G~~v~~~~~~~  103 (180)
                      +|.. .+. ..+..+++++.++++|....
T Consensus       275 TG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        275 TGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             CCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence            9976 454 56788999999999987653

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.42  E-value=4.4e-06  Score=64.41  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=68.1

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCC
Q 041355            5 GNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus         5 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      +.++.+..+ .-.|++|+|.| .|.+|..+++.++.+|++|+++..++.+      ...... .+.+.. .+.|+++++.
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal-~~aDVVItaT  258 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAA-KIGDIFITAT  258 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHH-hcCCEEEECC
Confidence            445545444 36899999999 9999999999999999999998776644      000000 011111 2579999999


Q ss_pred             Chh-hHH-HHHHhhccCCEEEEEeccc
Q 041355           78 GGK-MLD-AVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        78 g~~-~~~-~~~~~l~~~G~~v~~~~~~  102 (180)
                      |.. .+. ..+..+++++.++++|...
T Consensus       259 G~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       259 GNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             CCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            977 454 4778899999999997754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.38  E-value=7.1e-06  Score=64.08  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=69.9

Q ss_pred             HHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------C---cchHHHHHHhHcCCCccEEE
Q 041355            5 GNLIILVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------E---EPDLDAALKRWFPQGIDIYF   74 (180)
Q Consensus         5 ~~~l~~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~---~~~~~~~~~~~~~~~~d~~~   74 (180)
                      +.++.+..++ -.|++++|.| .|.+|..+++.++.+|++|+++.+++.+      .   ..+..+.+     ...|+++
T Consensus       241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal-----~~ADVVI  314 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVV-----SEADIFV  314 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHH-----hhCCEEE
Confidence            4556566554 5799999999 9999999999999999999998877653      0   00111111     1479999


Q ss_pred             eCCChh-h-HHHHHHhhccCCEEEEEeccc
Q 041355           75 ENVGGK-M-LDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        75 d~~g~~-~-~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      .|.|.. . ....+..+++++.++++|...
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence            999977 3 377889999999999998753

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.31  E-value=3.9e-06  Score=61.76  Aligned_cols=89  Identities=20%  Similarity=0.277  Sum_probs=60.9

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC----C---------cchH-HHHHHhHc--CCCccE
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK----E---------EPDL-DAALKRWF--PQGIDI   72 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~----~---------~~~~-~~~~~~~~--~~~~d~   72 (180)
                      ...+++|++||..| +|+ |..++++++..|.  +|++++.+++.    .         ..++ ...+.+..  ++.||+
T Consensus        72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         72 LAELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             hccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence            35678999999999 676 9888888888765  69999887654    0         0000 01122211  237999


Q ss_pred             EEeCC------Ch-hhHHHHHHhhccCCEEEEEecc
Q 041355           73 YFENV------GG-KMLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        73 ~~d~~------g~-~~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      ++...      .. ..+..+.++|+|+|+++..+..
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            88543      21 2688899999999999987654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.29  E-value=4.7e-06  Score=65.92  Aligned_cols=88  Identities=18%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------C---------------cchHHHHHHhH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------E---------------EPDLDAALKRW   65 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~---------------~~~~~~~~~~~   65 (180)
                      .++++++|.| +|.+|+++++.++.+|+.|++++.++++              +               ++++.+..++.
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            3578999999 8999999999999999999988887654              0               01222222222


Q ss_pred             cC---CCccEEEeCC---Chh----hHHHHHHhhccCCEEEEEecccc
Q 041355           66 FP---QGIDIYFENV---GGK----MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        66 ~~---~~~d~~~d~~---g~~----~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      ..   .++|++|+|+   |.+    .....++.+++++.++.++...+
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~G  288 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQG  288 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCC
Confidence            22   2799999999   542    45677899999999999987654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.20  E-value=1.4e-05  Score=57.39  Aligned_cols=87  Identities=24%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchHHHHHHhHc--CCCcc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDLDAALKRWF--PQGID   71 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~~~~~~~~~--~~~~d   71 (180)
                      ++++++|+||+|++|..+++.+...|++|+.++++++.                      +...+.+.+.+..  .+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999999999999999987652                      1111111121111  13679


Q ss_pred             EEEeCCChh------------------------hHHHHHHhhccCCEEEEEeccc
Q 041355           72 IYFENVGGK------------------------MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        72 ~~~d~~g~~------------------------~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      .++.+.|..                        .+...+++++++|+++.+++..
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            999888731                        1234445666788999887654

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.10  E-value=4.1e-05  Score=54.56  Aligned_cols=88  Identities=30%  Similarity=0.355  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------------CcchHHHHHHhHcC--CCccE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------------EEPDLDAALKRWFP--QGIDI   72 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------------~~~~~~~~~~~~~~--~~~d~   72 (180)
                      .++.++|+||++++|.+..+.+-..|++|+.++|+.++                     +.++....+.....  +++|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            45788999999999999999999999999999999885                     12232333333333  37999


Q ss_pred             EEeCCChh---h-----------------------HHHHHHhh--ccCCEEEEEecccc
Q 041355           73 YFENVGGK---M-----------------------LDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        73 ~~d~~g~~---~-----------------------~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      +++..|-.   .                       ....++.+  +..|.++++++..+
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG  143 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAG  143 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccc
Confidence            99988841   0                       12223322  45689999988775

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.07  E-value=0.00012  Score=56.34  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc-----chHHHHHHhHcCCCccEEEeCC---Ch-
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE-----PDLDAALKRWFPQGIDIYFENV---GG-   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~-----~~~~~~~~~~~~~~~d~~~d~~---g~-   79 (180)
                      +.+++|.| +|.+|+.+++.++.+|++|++++++.++        ..     ..-.+.+.+.. .++|++++|+   +. 
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l-~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAV-KRADLLIGAVLIPGAK  244 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHH-ccCCEEEEccccCCCC
Confidence            34588999 7999999999999999999988876543        00     00011222222 2589999998   33 


Q ss_pred             -h--hHHHHHHhhccCCEEEEEecccc
Q 041355           80 -K--MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        80 -~--~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                       +  .....+..+++++.++.++...+
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~d~G  271 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAIDQG  271 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence             2  13566778899999999987654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=1.7e-05  Score=55.00  Aligned_cols=38  Identities=13%  Similarity=0.251  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      -|.+|||+||++++|+...+-...+|-+||.+.|+.++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~   41 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEER   41 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHH
Confidence            47899999999999999999888899999999998776

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.99  E-value=6.3e-05  Score=56.10  Aligned_cols=86  Identities=22%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc--ch--HHHHHHhHcCCCccEEEeCCChh-hHHHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE--PD--LDAALKRWFPQGIDIYFENVGGK-MLDAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~--~~--~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~   86 (180)
                      .|.+++|.| .|.+|..+++.++.+|++|++++++.++    ..  ..  ....+.+.. .++|++|+|+... .....+
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~~~~l  228 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEV-GKIDIIFNTIPALVLTKEVL  228 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHh-CCCCEEEECCChhhhhHHHH
Confidence            689999999 7999999999999999999999887543    00  00  011222222 2689999999865 334566


Q ss_pred             HhhccCCEEEEEecccc
Q 041355           87 LNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~~~  103 (180)
                      ..+++++.++.++...+
T Consensus       229 ~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        229 SKMPPEALIIDLASKPG  245 (296)
T ss_pred             HcCCCCcEEEEEccCCC
Confidence            78899999999977553

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.98  E-value=0.0001  Score=54.39  Aligned_cols=63  Identities=16%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHH---HHHHhHcCCCccEEEe
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLD---AALKRWFPQGIDIYFE   75 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~d~~~d   75 (180)
                      .+++++|+||+|++|...++.+...|++|++++++++.                 +.+++.   +.+.+...+.+|+++.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~   82 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN   82 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence            46789999999999999999888889999999987643                 122222   2222333457999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus        83 ~Ag   85 (277)
T PRK05993         83 NGA   85 (277)
T ss_pred             CCC
Confidence            876

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.96  E-value=9.5e-05  Score=58.04  Aligned_cols=95  Identities=18%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcc----hH-HHHHHhHcCCCccEEEeCCCh
Q 041355            6 NLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP----DL-DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus         6 ~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~----~~-~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      ..+.+..+ .-.|++++|.| .|.+|..+++.++.+|++|+++.+++.+..+    .+ ...+.+.. ...|+++.|.|.
T Consensus       242 d~~~R~~~~~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell-~~ADIVI~atGt  319 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVV-ETADIFVTATGN  319 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHH-hcCCEEEECCCc
Confidence            34444433 34799999999 8999999999999999999888766443100    00 00111111 258999999987


Q ss_pred             h-hH-HHHHHhhccCCEEEEEeccc
Q 041355           80 K-ML-DAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        80 ~-~~-~~~~~~l~~~G~~v~~~~~~  102 (180)
                      . .+ ...+..+++++.++++|...
T Consensus       320 ~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        320 KDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             ccccCHHHHhccCCCcEEEEcCCCc
Confidence            6 44 37888999999999998764

>PRK08324 short chain dehydrogenase; Validated

Probab=97.93  E-value=7.4e-05  Score=61.96  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|++++|+||+|++|..+++.+...|++|++++++.+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            5789999999999999999999999999999988754

>PRK12742 oxidoreductase; Provisional

Probab=97.92  E-value=0.00014  Score=52.08  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++++++|+||+|++|..+++.+...|++|+.+.++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~   39 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG   39 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            47899999999999999999998899998877654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.87  E-value=0.00021  Score=49.19  Aligned_cols=82  Identities=21%  Similarity=0.219  Sum_probs=59.2

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcCCCccEEEeCCCh-----hhH
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFPQGIDIYFENVGG-----KML   82 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~~~~d~~~d~~g~-----~~~   82 (180)
                      |+|.||+|.+|...++.+...|.+|++++|++++            +-.+. +.+.+... ++|.+|.++|.     +..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~-~~~~~al~-~~d~vi~~~~~~~~~~~~~   78 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDP-DSVKAALK-GADAVIHAAGPPPKDVDAA   78 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCH-HHHHHHHT-TSSEEEECCHSTTTHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhh-hhhhhhhh-hcchhhhhhhhhccccccc
Confidence            7899999999999999999999999999999875            11112 23333333 69999999983     245


Q ss_pred             HHHHHhhccCC--EEEEEecccc
Q 041355           83 DAVLLNMRLRG--RIAVSSIISQ  103 (180)
Q Consensus        83 ~~~~~~l~~~G--~~v~~~~~~~  103 (180)
                      ..+++.++..|  +++.++....
T Consensus        79 ~~~~~a~~~~~~~~~v~~s~~~~  101 (183)
T PF13460_consen   79 KNIIEAAKKAGVKRVVYLSSAGV  101 (183)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTG
T ss_pred             ccccccccccccccceeeecccc
Confidence            55666665444  7777766553

...

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.83  E-value=8.2e-05  Score=54.18  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ..+.+++|+||++++|...+..+...|.+++.++|+.++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~k   42 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDK   42 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            467899999999999999999999999999999999886

>PRK06182 short chain dehydrogenase; Validated

Probab=97.83  E-value=0.00017  Score=53.01  Aligned_cols=63  Identities=25%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc--CCCccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF--PQGIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~d~~~d~   76 (180)
                      ++.+++|+||+|++|..+++.+...|++|++++++.++                 +.+++...+.+..  .+++|+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            46789999999999999999888889999999887543                 2222222233221  2479999999


Q ss_pred             CC
Q 041355           77 VG   78 (180)
Q Consensus        77 ~g   78 (180)
                      .|
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            87

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00023  Score=52.36  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      ++++|+||+|++|..+++.+...|++|++++++.+.                 +.+++.+.+....  .+++|+++.+.|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   81 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG   81 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            478999999999999999998889999999887542                 1122222222221  247999999987

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00038  Score=50.29  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+++|+||+|++|..+++.+...|++|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999999999998888899999887754

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00035  Score=51.06  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|..+++.+...|++|+.++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4679999999999999999888889999999988754

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00029  Score=53.50  Aligned_cols=37  Identities=27%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~   43 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEE   43 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999999999999999988889999999988754

>PRK06128 oxidoreductase; Provisional

Probab=97.70  E-value=0.00047  Score=51.49  Aligned_cols=36  Identities=11%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.++||+||++++|..+++.+...|++|+.+.++.
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            367899999999999998888888899998876643

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00046  Score=49.77  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|..++..+...|++|++++++++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4788999999999999999988889999999887655

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00054  Score=50.16  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~   42 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE   42 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999999999999999988999999988764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.00068  Score=49.89  Aligned_cols=89  Identities=24%  Similarity=0.277  Sum_probs=61.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------------CcchHHHHHHhH--cCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------------EEPDLDAALKRW--FPQ   68 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------------~~~~~~~~~~~~--~~~   68 (180)
                      .|+.|+|+||++++|...+.-.-..|++++.+++...+                         +.++....+.+.  .-|
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            57889999999999998777777889988888888765                         112222222221  135


Q ss_pred             CccEEEeCCChh-----------h---------------HHHHHHhhccC--CEEEEEeccccc
Q 041355           69 GIDIYFENVGGK-----------M---------------LDAVLLNMRLR--GRIAVSSIISQY  104 (180)
Q Consensus        69 ~~d~~~d~~g~~-----------~---------------~~~~~~~l~~~--G~~v~~~~~~~~  104 (180)
                      ++|+.++..|-.           .               ...+++.+++.  |+++.+++..+.
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~  154 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK  154 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence            899999987731           0               13345566433  999999887764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.62  E-value=0.0019  Score=44.92  Aligned_cols=87  Identities=15%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC------------CcchHHHHHHhHcCC-CccEEEe-C
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK------------EEPDLDAALKRWFPQ-GIDIYFE-N   76 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~------------~~~~~~~~~~~~~~~-~~d~~~d-~   76 (180)
                      ..+++|++||..| +|+-+.......+..+ .+|++++.++..            .+....+.+++..+. ++|+++. .
T Consensus        28 ~~i~~g~~VLDiG-~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~  106 (188)
T TIGR00438        28 KLIKPGDTVLDLG-AAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA  106 (188)
T ss_pred             cccCCCCEEEEec-CCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence            4468999999999 6655554333333333 489999988742            122333445555554 8999984 2


Q ss_pred             ----CCh-------------hhHHHHHHhhccCCEEEEEe
Q 041355           77 ----VGG-------------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        77 ----~g~-------------~~~~~~~~~l~~~G~~v~~~   99 (180)
                          .|.             ..+..+.++|+|+|+++...
T Consensus       107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                221             24566778999999998754

>PRK06398 aldose dehydrogenase; Validated

Probab=97.61  E-value=0.00033  Score=51.10  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .|.+++|+||++++|..+++.+...|++|+.++++...            +..++.+.+.+..  .+++|+++.+.|
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag   81 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            46899999999999999999998899999998887553            2222222232222  236999999877

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.61  E-value=0.00097  Score=46.86  Aligned_cols=89  Identities=16%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             CCCEEEEec-CCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------Ccch---HHHHHHhHcCCCccEE
Q 041355           16 KGEYVYVSA-ASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPD---LDAALKRWFPQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~G-a~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~---~~~~~~~~~~~~~d~~   73 (180)
                      ..+.|||+| +.|++|.+...-...-|+.|++++|+-+.                  ++++   +..++++...|+.|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            345688875 56899998888888889999999999886                  2232   3456677777799999


Q ss_pred             EeCCChhh-------------------------HHHHH--HhhccCCEEEEEeccccc
Q 041355           74 FENVGGKM-------------------------LDAVL--LNMRLRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~~-------------------------~~~~~--~~l~~~G~~v~~~~~~~~  104 (180)
                      ++..|.+.                         +...+  .+.+..|+++++|+..+.
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~  143 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV  143 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE
Confidence            99777531                         12222  245788999999988754

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00021  Score=53.25  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA   44 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999999889999999888654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.59  E-value=0.00094  Score=52.77  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +|.+++|+||+|++|..+++.+...|++|++++++.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~  244 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA  244 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            578999999999999999999988999999887753

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00037  Score=51.06  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+.               +.+++.+.+....  .+.+|+++.|.|
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag   82 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAG   82 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            35689999999999999888888889999999987543               2222333233221  247999999987


Q ss_pred             h
Q 041355           79 G   79 (180)
Q Consensus        79 ~   79 (180)
                      .
T Consensus        83 ~   83 (270)
T PRK06179         83 V   83 (270)
T ss_pred             C
Confidence            3

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00027  Score=51.36  Aligned_cols=38  Identities=29%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -.+++++|+||+|++|..+++.+...|++|++++++.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~   44 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVE   44 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999999999889999999988754

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00024  Score=53.86  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|...++.+...|++|+.++++++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~   42 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEE   42 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999999999999999999999999988754

>PRK07985 oxidoreductase; Provisional

Probab=97.55  E-value=0.0013  Score=49.06  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||++++|..+++.+...|++|+.+.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            45789999999999999988888889999887654

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00032  Score=50.99  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|+++++++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5789999999999999999999889999999988754

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00037  Score=50.73  Aligned_cols=62  Identities=24%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHH---HHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDA---ALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~---~~~~~~~~~~d~~~d~~g   78 (180)
                      +|.+++|+||+|++|...++.+...|++|+.++++...              +.+.+..   .+.+. .+++|+++.+.|
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~vi~~ag   86 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLER-LGGVDILVHVLG   86 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHH-cCCCCEEEECCc
Confidence            57899999999999999998888889999999887543              1122222   22222 247899999887

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00038  Score=49.80  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|.+|..+++.+...|++|+.++++.+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            3789999999999999999988888999999988654

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00073  Score=48.17  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc-CCCccEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF-PQGIDIYFENVG   78 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~-~~~~d~~~d~~g   78 (180)
                      .+++|+||+|++|...++.+...|++|++++++++.                 .+.+....+.+.. .+++|+++.+.|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            468999999999999888888889999999988653                 1222222223322 237899888775

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.52  E-value=0.00059  Score=47.07  Aligned_cols=79  Identities=23%  Similarity=0.219  Sum_probs=55.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---------cchHHHHHHhHcCCCccEEEeCCCh-h-----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---------EPDLDAALKRWFPQGIDIYFENVGG-K-----   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~d~~g~-~-----   80 (180)
                      .|.+|.|+| .|.+|+..++.++.+|++|++.+++....         ..++.+.+.     ..|+++.++.. +     
T Consensus        35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~-----~aDiv~~~~plt~~T~~l  108 (178)
T PF02826_consen   35 RGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLA-----QADIVSLHLPLTPETRGL  108 (178)
T ss_dssp             TTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHH-----H-SEEEE-SSSSTTTTTS
T ss_pred             CCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcc-----hhhhhhhhhcccccccee
Confidence            589999999 99999999999999999999999987530         112222222     26888777652 2     


Q ss_pred             hHHHHHHhhccCCEEEEEec
Q 041355           81 MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        81 ~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .-...+..++++..+++++-
T Consensus       109 i~~~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  109 INAEFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             BSHHHHHTSTTTEEEEESSS
T ss_pred             eeeeeeeccccceEEEeccc
Confidence            12456678888888888754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.52  E-value=0.00033  Score=51.14  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++++|+||++++|..+++.+...|++|+.++++++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAE   41 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999988889999999988754

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=97.51  E-value=0.00046  Score=50.83  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|..++|+|++.++|.+++..+...|++|+.+.+++++
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~   44 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEER   44 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            57889999999999999999999999999999998775

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00044  Score=50.54  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|...++.+...|++|+.++++++
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~   43 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE   43 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4789999999999999999999889999999988764

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00035  Score=51.08  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~   45 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES   45 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999988754

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.49  E-value=0.00038  Score=50.27  Aligned_cols=37  Identities=11%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|++++|+|++|++|+.+++.+...|++|+.++++.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~   40 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999999889999999888754

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00036  Score=51.99  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|..+++.+...|++|++++++.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~   75 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARRED   75 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999888888999999998754

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00074  Score=48.27  Aligned_cols=64  Identities=23%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcCC-CccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      .+.+++|+||+|++|...++.+...|++|+.+.++...            +.+.+.+.+.+.... ++|+++.+.|.
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   78 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDFPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGI   78 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCC
Confidence            35789999999999999998888889999999887543            222222223332222 68999998873

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0019  Score=48.06  Aligned_cols=36  Identities=14%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+++|+||+|++|..+++.+...|++|+.+.++.
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999999998888877899998887764

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0014  Score=47.09  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+++|+||+|++|..+++.+...|++++.+.++.
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~   39 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS   39 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence            467899999999999999999988999988776653

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.47  E-value=0.0003  Score=55.56  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             cCCCCCCEEE----EecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCcc-EEEeCCChh------
Q 041355           12 CSPKKGEYVY----VSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGID-IYFENVGGK------   80 (180)
Q Consensus        12 ~~~~~g~~vl----I~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~d~~g~~------   80 (180)
                      .++++|+.++    |+||+|++|.+++|+++..|++|+++.+.+.....        ....+++ +++|..+-.      
T Consensus        29 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~l~  100 (450)
T PRK08261         29 RRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA--------GWGDRFGALVFDATGITDPADLK  100 (450)
T ss_pred             cCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccccccc--------CcCCcccEEEEECCCCCCHHHHH
Confidence            4557899988    99999999999999999999999988765432000        0011455 677776532      


Q ss_pred             ----hHHHHHHhhccCCEEEEEeccc
Q 041355           81 ----MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        81 ----~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                          .+...++.+.++|+++.++...
T Consensus       101 ~~~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261        101 ALYEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEcccc
Confidence                2345567778899999987654

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.00054  Score=49.69  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+++++|+||+|++|...++.+...|++|+.++++.+.               +.+++.+.+....  .+++|+++.+.|
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   84 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAG   84 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47899999999999999998888899999999887531               1222222222221  247899999887

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.46  E-value=0.00044  Score=50.47  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   40 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA   40 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999888889999999887653

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06196 oxidoreductase; Provisional

Probab=97.45  E-value=0.00052  Score=51.59  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4689999999999999988888888999999988754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.45  E-value=0.00098  Score=49.53  Aligned_cols=85  Identities=20%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-------cch-HHHHHHhHcCCCccEEEeCCChhhH-HHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-------EPD-LDAALKRWFPQGIDIYFENVGGKML-DAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-------~~~-~~~~~~~~~~~~~d~~~d~~g~~~~-~~~~   86 (180)
                      .|++++|.| .|.+|..+++.++.+|++|++..++.++.       ... ....+.+.. .++|+++.|+....+ ...+
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l  227 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKV-AEIDIVINTIPALVLTADVL  227 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHh-ccCCEEEECCChHHhCHHHH
Confidence            578999999 79999999999999999999888876430       000 011122221 268999999976533 3456


Q ss_pred             HhhccCCEEEEEeccc
Q 041355           87 LNMRLRGRIAVSSIIS  102 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~~  102 (180)
                      ..++++..++.+++..
T Consensus       228 ~~~k~~aliIDlas~P  243 (287)
T TIGR02853       228 SKLPKHAVIIDLASKP  243 (287)
T ss_pred             hcCCCCeEEEEeCcCC
Confidence            6788888888887644

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.00046  Score=50.49  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~   44 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE   44 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999988654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.45  E-value=0.0019  Score=45.31  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC-----------C-c-------chHHHHHHhHcCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK-----------E-E-------PDLDAALKRWFPQ   68 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~-----------~-~-------~~~~~~~~~~~~~   68 (180)
                      ....+.++++++..| +|+ |.+++++++..+  .+|++++.+++.           . .       .+..+.+. ...+
T Consensus        34 ~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-~~~~  110 (198)
T PRK00377         34 SKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF-TINE  110 (198)
T ss_pred             HHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh-hcCC
Confidence            456788999999999 666 999999998764  489999998654           0 0       01111111 1224


Q ss_pred             CccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           69 GIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        69 ~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                      .+|.++...+..    .+..+.+.|+|+|+++..
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            799998755432    566777889999998753

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.44  E-value=0.0005  Score=49.66  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+|++|..+++.+...|++|+.++++.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            478999999999999998888888899999988764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.00045  Score=50.13  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|..+++.+...|++|+.++++.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD   44 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4789999999999999999988889999999888754

>PRK06484 short chain dehydrogenase; Validated

Probab=97.44  E-value=0.0012  Score=52.99  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=60.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDI   72 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~   72 (180)
                      ..|++++|+||++++|...++.+...|++|+.++++.++                    +.+++...+.+..  .+.+|+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357889999999999999998888899999999886442                    1122222222221  147999


Q ss_pred             EEeCCChh----h-----------------------HHHHHHhhccCCEEEEEecccc
Q 041355           73 YFENVGGK----M-----------------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        73 ~~d~~g~~----~-----------------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      ++.+.|..    .                       ...+++.++.+|+++.+++..+
T Consensus       347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            99988731    0                       1223344556789999877654

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.43  E-value=0.00052  Score=51.83  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|.+++|+||++++|...++.+...|++|+.+++++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~   89 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK   89 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            58899999999999999888777789999999987653

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.00068  Score=48.74  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|++++++++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~   41 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK   41 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence            4678999999999999999888889999999998764

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.00051  Score=50.62  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|...++.+...|++|++++++.+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   39 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA   39 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH
Confidence            3578999999999999999988888999999998654

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.00048  Score=50.57  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=31.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~   40 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEA   40 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999998888888999998887654

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.00087  Score=48.69  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|..+++.+...|++|++++++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~   43 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD   43 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4678999999999999999998889999999887643

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.00084  Score=48.30  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|++++++.+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~   44 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA   44 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5688999999999999999999999999999988754

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0006  Score=49.49  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|...++.+...|++|+.++++++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~   41 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA   41 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999998888888999999988754

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.39  E-value=0.00094  Score=48.80  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++...              +.+++...+.+..  .+.+|+++.+.|
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag   86 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAG   86 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            46789999999999999999998899999988877543              2222222222221  247899999887

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.39  E-value=0.00056  Score=49.66  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.++++.+...|++|+.+.+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            478999999999999999998888999998887653

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00065  Score=51.10  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||++++|..+++.+...|++|+.++++.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~   49 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRA   49 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999988888888999999998754

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0007  Score=49.11  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4779999999999999988888888999999888753

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.00066  Score=49.27  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchH--HHHHHhHcCCCccEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDL--DAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~--~~~~~~~~~~~~d~~~d~~   77 (180)
                      +.+++|+||+|++|..+++.+...|++|+++++++..                 ...|+  .+.+.+...+++|++|.+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            4689999999999999999999999999999886432                 00011  1233333334799999988


Q ss_pred             C
Q 041355           78 G   78 (180)
Q Consensus        78 g   78 (180)
                      |
T Consensus        82 g   82 (257)
T PRK09291         82 G   82 (257)
T ss_pred             C
Confidence            7

>PRK06194 hypothetical protein; Provisional

Probab=97.37  E-value=0.00075  Score=49.90  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.++||+||+|++|..+++.+...|++|++++++.+
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~   41 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQD   41 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3678999999999999999888888999998887643

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.0031  Score=45.58  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+++|+||+|.+|...++-+...|++|+.+.++
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~   39 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK   39 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999888888899998777654

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0018  Score=47.58  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +++|+||+|++|..+++.+...|++|+.+.+++
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~   34 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDA   34 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999999999999998888899998888765

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.36  E-value=0.0011  Score=44.62  Aligned_cols=62  Identities=23%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhHcCC-CccEEEeCCCh
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      .+|+|+||-|..|.++++..|..|+-|..++-++++                .++.+.+++.+...+ ++|.+|...|+
T Consensus         4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGG   82 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGG   82 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceEEEeecc
Confidence            468999999999999999999999988877776654                123344555555556 89999976664

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.35  E-value=0.0023  Score=45.13  Aligned_cols=84  Identities=10%  Similarity=0.003  Sum_probs=53.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH--H----HhHcC---CCccEEEeCCChhhHHHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA--L----KRWFP---QGIDIYFENVGGKMLDAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~--~----~~~~~---~~~d~~~d~~g~~~~~~~~   86 (180)
                      .|.+|+|.| +|.+|...++.+...|++|+++.+.....-.++.+.  +    +....   .++|+++-|++.+.++..+
T Consensus         9 ~~k~vLVIG-gG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i   87 (202)
T PRK06718          9 SNKRVVIVG-GGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQV   87 (202)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHH
Confidence            578899999 799999988888888998888765321100111110  0    00111   2689999999988777666


Q ss_pred             HhhccCCEEEEEec
Q 041355           87 LNMRLRGRIAVSSI  100 (180)
Q Consensus        87 ~~l~~~G~~v~~~~  100 (180)
                      ...+..+.++++..
T Consensus        88 ~~~a~~~~lvn~~d  101 (202)
T PRK06718         88 KEDLPENALFNVIT  101 (202)
T ss_pred             HHHHHhCCcEEECC
Confidence            55545566666643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.35  E-value=0.00074  Score=48.74  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999999999988888888999999998864

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0007  Score=49.07  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4689999999999999988888888999999998754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.35  E-value=0.00072  Score=49.10  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.+.++++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4789999999999999999888888999998887754

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.00097  Score=48.55  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..-++.+++|+||+|++|..+++.+...|++|+++.++++
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~   46 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEA   46 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3357789999999999999999998889999999988654

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.00073  Score=49.00  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      |++++|+||++++|..+++.+...|++|++++++.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~   36 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKE   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999999889999999987654

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.00069  Score=48.87  Aligned_cols=36  Identities=11%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~   40 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDP   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence            467899999999999999999988999999988764

>PRK08643 acetoin reductase; Validated

Probab=97.33  E-value=0.00087  Score=48.65  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=32.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~   37 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE   37 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999988888999999988754

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.00074  Score=49.02  Aligned_cols=37  Identities=35%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5688999999999999999988889999999988654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.32  E-value=0.0015  Score=46.92  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=32.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||++++|...++.+...|++|+.++++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   37 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY   37 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch
Confidence            468999999999999999988889999999988764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.32  E-value=0.00093  Score=48.58  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~   42 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQD   42 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH
Confidence            4789999999999999999999889999999888763

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0011  Score=47.56  Aligned_cols=37  Identities=11%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||++++|...+.-+...|++|+.+.++.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4688999999999999988888888999998887654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.31  E-value=0.0016  Score=43.96  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----CcchHH-HHHHhHcCCCccEEEeCCC
Q 041355            5 GNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPDLD-AALKRWFPQGIDIYFENVG   78 (180)
Q Consensus         5 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~~~-~~~~~~~~~~~d~~~d~~g   78 (180)
                      +.++.+..+ .-.|++++|.| -|-+|.-.++.++.+|++|+++...+-+    ..+.+. ..+.+.. ...|+++.+.|
T Consensus        10 ~d~i~r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~-~~adi~vtaTG   87 (162)
T PF00670_consen   10 VDGIMRATNLMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEAL-RDADIFVTATG   87 (162)
T ss_dssp             HHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHT-TT-SEEEE-SS
T ss_pred             HHHHHhcCceeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHH-hhCCEEEECCC
Confidence            344445544 45899999999 9999999999999999999998886543    000000 0111111 25799999999


Q ss_pred             hh-h-HHHHHHhhccCCEEEEEecc
Q 041355           79 GK-M-LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        79 ~~-~-~~~~~~~l~~~G~~v~~~~~  101 (180)
                      .. . -..-+..++++.-+.+.|..
T Consensus        88 ~~~vi~~e~~~~mkdgail~n~Gh~  112 (162)
T PF00670_consen   88 NKDVITGEHFRQMKDGAILANAGHF  112 (162)
T ss_dssp             SSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred             CccccCHHHHHHhcCCeEEeccCcC
Confidence            76 2 35667788888777666543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.31  E-value=0.00098  Score=48.36  Aligned_cols=37  Identities=14%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.++||+||+|++|...++.+...|++|+.++++++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~   44 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAE   44 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            4778999999999999988888888999999888754

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0018  Score=47.20  Aligned_cols=39  Identities=10%  Similarity=0.035  Sum_probs=32.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~   52 (180)
                      +..+.+++|+||+|++|...++-+... |++|+.++++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~   44 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD   44 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            456789999999999999988776666 589999988754

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.31  E-value=0.001  Score=48.34  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+++|+||++++|...++.+...|++|+.+.++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~   43 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIV   43 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            47899999999999999999988899999887654

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.00085  Score=50.21  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~   50 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL   50 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999999999998888888899999888764

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0039  Score=45.15  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+.+++|+||++++|.++++.+...|++|+.+.+
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~   36 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYG   36 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            4678999999999999999999889999887653

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.00085  Score=48.92  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|..+++.+...|++|+.+++++.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~   36 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNET   36 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357999999999999999988888999999988753

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0011  Score=48.08  Aligned_cols=37  Identities=19%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|...++.+...|++|++++++++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            4678999999999999988888888999888887664

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0011  Score=48.41  Aligned_cols=39  Identities=31%  Similarity=0.297  Sum_probs=33.2

Q ss_pred             CCCCCEEEEecCCc-hHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAASG-AVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g-~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.++++++|+||+| ++|.++++.+...|++|++++++++
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~   53 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER   53 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            44678999999986 8999999999999999998877653

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.001  Score=48.07  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.+.++++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~   41 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE   41 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999988888888999999988753

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0009  Score=49.35  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~   40 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK   40 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            477899999999999999988888999999887764

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0011  Score=48.91  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|...++.+...|++|++++++.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~   38 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE   38 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            3568999999999999999888888999999987643

>PRK08589 short chain dehydrogenase; Validated

Probab=97.28  E-value=0.0011  Score=48.68  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+++|+||++++|...++.+...|++|++++++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47799999999999999888888889999999887

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.27  E-value=0.0026  Score=43.63  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-Cc-chH---HHHHHhHc---C--CCccEEEeCCChh--------
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-EE-PDL---DAALKRWF---P--QGIDIYFENVGGK--------   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~~-~~~---~~~~~~~~---~--~~~d~~~d~~g~~--------   80 (180)
                      +|.|.||+|-+|...++-|+..|-+|.+++|++++ .. +..   ...+.+.+   .  .++|+|+++.|..        
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~   81 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDELH   81 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHHH
Confidence            58899999999999999999999999999999887 11 111   11111111   1  2799999998743        


Q ss_pred             --hHHHHHHhhccC--CEEEEEecccc
Q 041355           81 --MLDAVLLNMRLR--GRIAVSSIISQ  103 (180)
Q Consensus        81 --~~~~~~~~l~~~--G~~v~~~~~~~  103 (180)
                        ..+.++..|+.-  -|+..+|..++
T Consensus        82 ~k~~~~li~~l~~agv~RllVVGGAGS  108 (211)
T COG2910          82 SKSIEALIEALKGAGVPRLLVVGGAGS  108 (211)
T ss_pred             HHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence              133455666653  47777776553

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.27  E-value=0.0012  Score=47.37  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|.+|...++.+...|.+|+.+++++.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3578999999999999999988888999999988754

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.27  E-value=0.0011  Score=48.32  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +|++++|+||++++|..+++.+...|++|+.+.+++
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~   42 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSN   42 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            578999999999999999988888999998876543

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.001  Score=48.40  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|..+++.+...|++|+.++++++
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~   42 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAA   42 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999999988889999999888643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.26  E-value=0.0012  Score=48.03  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.++||+||++++|...++.+...|++|+.++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999888899999988876

>PRK08017 oxidoreductase; Provisional

Probab=97.26  E-value=0.0013  Score=47.67  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++++|+||+|++|..+++.+...|++|++++++.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~   38 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDD   38 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            579999999999999999999899999999887653

>PRK05717 oxidoreductase; Validated

Probab=97.26  E-value=0.0011  Score=48.25  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..++..+...|++|+.++++.
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            478899999999999998888888899999887664

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.001  Score=48.17  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|...++.+...|++|+.++++.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~   43 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD   43 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999999999999999889999999988643

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.26  E-value=0.00095  Score=48.15  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|..+++.+...|++|++++++.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~   41 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD   41 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999998888888999999998743

>PRK12743 oxidoreductase; Provisional

Probab=97.24  E-value=0.0015  Score=47.52  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +++++|+||++++|..+++.+...|++|+.+.+++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~   36 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSD   36 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCC
Confidence            56899999999999999999988999998876543

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0011  Score=47.52  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|..+++.+...|++|++++++++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~   41 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK   41 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence            4688999999999999988888778999999988654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.24  E-value=0.0012  Score=47.78  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|...++.+...|++|+.++++++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~   39 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE   39 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4578999999999999988888888999999988755

>PLN02253 xanthoxin dehydrogenase

Probab=97.23  E-value=0.0011  Score=48.80  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.+++++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~   52 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD   52 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            467899999999999998888888899999988754

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.23  E-value=0.0015  Score=47.51  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|...++.+...|++|+.+.++.
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~   41 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA   41 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468899999999999999988888899988876653

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0017  Score=47.32  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|.|+++++|...++.+...|++|+.++++.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~   42 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDAD   42 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4789999999999999999888889999999988754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.23  E-value=0.0037  Score=47.06  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             hHHHHHHHHcCC---CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------Cc--chHHHHHHhHcCC
Q 041355            3 IVGNLIILVCSP---KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------EE--PDLDAALKRWFPQ   68 (180)
Q Consensus         3 ~a~~~l~~~~~~---~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------~~--~~~~~~~~~~~~~   68 (180)
                      ++++++......   -++.+|+|.| +|.+|..+++.++..|+ +|+++.++.++        ..  ..+ +.+.+.. .
T Consensus       161 v~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~-~~~~~~l-~  237 (311)
T cd05213         161 ISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPL-DELLELL-N  237 (311)
T ss_pred             HHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeH-HHHHHHH-h
Confidence            455565322221   3789999999 79999999999998876 77778776553        00  011 1111211 2


Q ss_pred             CccEEEeCCChhhH
Q 041355           69 GIDIYFENVGGKML   82 (180)
Q Consensus        69 ~~d~~~d~~g~~~~   82 (180)
                      ..|++|.|++.+..
T Consensus       238 ~aDvVi~at~~~~~  251 (311)
T cd05213         238 EADVVISATGAPHY  251 (311)
T ss_pred             cCCEEEECCCCCch
Confidence            57999999997743

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.22  E-value=0.0013  Score=48.50  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|...++.+...|++|+.++++.+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~   45 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE   45 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4788999999999999999988889999999888653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.22  E-value=0.0011  Score=48.15  Aligned_cols=37  Identities=30%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++.+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~   47 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAE   47 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4788999999999999999888889999999888654

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0012  Score=47.63  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++.+
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~   40 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAE   40 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHH
Confidence            4678999999999999988877778999999988754

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.21  E-value=0.0013  Score=49.69  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~   41 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLK   41 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999999999999998888888999999987643

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.19  E-value=0.0014  Score=47.64  Aligned_cols=36  Identities=31%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.+++++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~   42 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE   42 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            467899999999999999998888899999888763

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.18  E-value=0.0044  Score=45.86  Aligned_cols=76  Identities=20%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhh-HHHHHHhhccCCE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKM-LDAVLLNMRLRGR   94 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~-~~~~~~~l~~~G~   94 (180)
                      .|.+++|.|++.-+|.-+.+++...|++|+++.+.    ..++.+.+++     .|+++-++|.+. +..  ..++++..
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~----t~~l~~~~~~-----ADIVIsAvg~p~~i~~--~~vk~gav  225 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR----SKDMASYLKD-----ADVIVSAVGKPGLVTK--DVVKEGAV  225 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC----chhHHHHHhh-----CCEEEECCCCCcccCH--HHcCCCcE
Confidence            78999999977779999999999999999987763    2334444443     799999999873 333  46788888


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.+|...
T Consensus       226 VIDvGi~~  233 (286)
T PRK14175        226 IIDVGNTP  233 (286)
T ss_pred             EEEcCCCc
Confidence            88888754

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.18  E-value=0.0014  Score=47.06  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|.||+|++|..++..+...|++|+.++++++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~   42 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE   42 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999999999998888889999999988754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.0014  Score=47.50  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|.+++|+||++++|...++.+...|++|+.++++++
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~   46 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA   46 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            5889999999999999988888888999999988754

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0015  Score=47.03  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..+.+++|.||+|++|..++..+...|++|++++++++
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~   41 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQD   41 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45678999999999999999998889999999988754

>PRK09186 flagellin modification protein A; Provisional

Probab=97.17  E-value=0.0016  Score=47.17  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|...+..+...|++|+.+++++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~   38 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK   38 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence            478899999999999999888888999999988764

>PRK07578 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0099  Score=41.47  Aligned_cols=59  Identities=22%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      +++|+||++++|..++..+... .+|+.++++...     .+++-.+.+.+.. +++|+++.+.|.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~~~~~D~~~~~~~~~~~~~~-~~id~lv~~ag~   65 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSGDVQVDITDPASIRALFEKV-GKVDAVVSAAGK   65 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCCceEecCCChHHHHHHHHhc-CCCCEEEECCCC
Confidence            5899999999999877766655 889998887643     2222222222222 479999988873

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.16  E-value=0.0016  Score=47.40  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   41 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA   41 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            3678999999999999999998888999999888765

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0015  Score=47.95  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~   42 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPD   42 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4689999999999999999999889999999988643

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0022  Score=47.61  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      -+|.+++|+||++++|...++.+...|++|+.++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence            3578999999999999998888888899998887654

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0019  Score=47.15  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|++|...++.+...|++|++++++++
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~   40 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAE   40 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999999999999988888888999999988754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.14  E-value=0.0015  Score=47.64  Aligned_cols=34  Identities=32%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||++++|..+++.+...|++|+.++++++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~   35 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEE   35 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5899999999999988888888999999888743

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=97.13  E-value=0.0019  Score=47.76  Aligned_cols=38  Identities=32%  Similarity=0.471  Sum_probs=33.0

Q ss_pred             CCCCEEEEecCCchHHHH-HHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQL-VGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~-~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +-|++.+|+||+.++|.. +-++|| .|.+|+.+.|+.++
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~K   85 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEK   85 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHH
Confidence            457899999999999976 777777 99999999999886

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0018  Score=47.12  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~   37 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTD   37 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999988888888999999887643

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0025  Score=46.40  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~   36 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEA   36 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46999999999999999888888999999887654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.12  E-value=0.0041  Score=46.98  Aligned_cols=87  Identities=18%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC-----------Ccc--hH-HHHHHhHc-C-CCcc
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK-----------EEP--DL-DAALKRWF-P-QGID   71 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~-----------~~~--~~-~~~~~~~~-~-~~~d   71 (180)
                      +...++++++||..| +| .|..++.+++..+.  .|++++.+++.           ...  .+ .....+.. . +.+|
T Consensus        74 ~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         74 EWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             HhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence            445678999999999 55 59999999998764  68888887653           000  00 00011111 1 3699


Q ss_pred             EEEeCCChh-hHHHHHHhhccCCEEEEE
Q 041355           72 IYFENVGGK-MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        72 ~~~d~~g~~-~~~~~~~~l~~~G~~v~~   98 (180)
                      +|+.+.+.. .....++.|+++|+++..
T Consensus       152 ~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        152 VIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             EEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            999888755 445677899999998764

>PRK09242 tropinone reductase; Provisional

Probab=97.12  E-value=0.0017  Score=47.13  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~   44 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDAD   44 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4789999999999999999998889999999887653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.12  E-value=0.0057  Score=43.21  Aligned_cols=84  Identities=20%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH--H----HhHcC---CCccEEEeCCChhhHH-HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA--L----KRWFP---QGIDIYFENVGGKMLD-AV   85 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~--~----~~~~~---~~~d~~~d~~g~~~~~-~~   85 (180)
                      .|.+|+|.| .|.+|..-++.+...|++|.+++......-..+.+.  +    ++...   .++++++-|.+.+..+ .+
T Consensus         8 ~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i   86 (205)
T TIGR01470         8 EGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRV   86 (205)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHH
Confidence            467999999 899999999999999999988876533100011100  0    00011   2689999999987444 44


Q ss_pred             HHhhccCCEEEEEec
Q 041355           86 LLNMRLRGRIAVSSI  100 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~  100 (180)
                      ....+..|..+++..
T Consensus        87 ~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        87 AHAARARGVPVNVVD  101 (205)
T ss_pred             HHHHHHcCCEEEECC
Confidence            455667787776643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.002  Score=46.80  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|...+..+...|++|+.++++.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~   37 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAA   37 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999988888788999999888754

>PRK09135 pteridine reductase; Provisional

Probab=97.11  E-value=0.0024  Score=45.96  Aligned_cols=36  Identities=11%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|.+|..+++.+...|++|+.++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            467899999999999998888888899999998763

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.11  E-value=0.0017  Score=46.79  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.++||+||+|.+|..+++.+...|++|+.++++.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~   38 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNRE   38 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH
Confidence            4678999999999999999988888999998887653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.10  E-value=0.0025  Score=46.45  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.+.+++
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~   41 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD   41 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999999999999999999989999988877754

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.10  E-value=0.002  Score=46.79  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|..++..+...|++|+.++++.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~   46 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4789999999999999999888888999998887643

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.10  E-value=0.0012  Score=41.54  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHH-HcCCEEEEEeCCCCC---CcchH-----H-------HHH--HhHcCCCccEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKEK---EEPDL-----D-------AAL--KRWFPQGIDIYFENV   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak-~~g~~vi~~~~~~~~---~~~~~-----~-------~~~--~~~~~~~~d~~~d~~   77 (180)
                      ||.+||-.| +| .|..++.+++ ..+++|++++.+++.   -....     .       ..+  .....++||+++...
T Consensus         1 p~~~vLDlG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLG-CG-TGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEET-TT-TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEc-Cc-CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            688999898 44 4888888888 468899999998664   00000     0       011  111123799998766


Q ss_pred             -Chh----------hHHHHHHhhccCCEEEEE
Q 041355           78 -GGK----------MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        78 -g~~----------~~~~~~~~l~~~G~~v~~   98 (180)
                       ...          .+..+.+.|+|+|+++..
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence             221          267777899999998753

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.09  E-value=0.0014  Score=48.40  Aligned_cols=90  Identities=26%  Similarity=0.356  Sum_probs=52.7

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHH-------HHHHhHcCCCcc
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLD-------AALKRWFPQGID   71 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~-------~~~~~~~~~~~d   71 (180)
                      .+.+..++++|++||-.| +| -|-.++.+++.+|++|+++..+++.        ....+.       ...++ ..+.||
T Consensus        53 ~~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~fD  129 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGKFD  129 (273)
T ss_dssp             HHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S-S
T ss_pred             HHHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCCCC
Confidence            345777899999999999 66 6888889999999999999988764        000000       01111 122688


Q ss_pred             EEEe-----CCChh----hHHHHHHhhccCCEEEEEe
Q 041355           72 IYFE-----NVGGK----MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d-----~~g~~----~~~~~~~~l~~~G~~v~~~   99 (180)
                      .|+.     .+|.+    .+..+-+.|+|+|+++.-.
T Consensus       130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7643     34432    3667778999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.09  E-value=0.0023  Score=46.81  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|..++..+...|++|+.+.++++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~   45 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQE   45 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5678999999999999888877788999998887754

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0021  Score=46.37  Aligned_cols=36  Identities=14%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|...++.+...|++|+.++++++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~   37 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTD   37 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            568999999999999888777778999998887653

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0017  Score=47.23  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++ |+.++++.+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~   42 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE   42 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence            5678999999999999999999889997 888887654

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.002  Score=47.38  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~   38 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTA   38 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            468999999999999988888778999999888753

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0053  Score=43.15  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh----------------HcC-CCcc
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR----------------WFP-QGID   71 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~----------------~~~-~~~d   71 (180)
                      .+...+++|++||-.|  ++.|+.+.-+++..+ +|+.+.+.++-- +.-..++..                +.. +.||
T Consensus        65 ~~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~-~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518          65 LQLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELA-EQARRNLETLGYENVTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             HHHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHH-HHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence            3666889999999998  346999999999988 899888865420 000001111                111 2689


Q ss_pred             EEEeCCChhhH-HHHHHhhccCCEEEEEec
Q 041355           72 IYFENVGGKML-DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~d~~g~~~~-~~~~~~l~~~G~~v~~~~  100 (180)
                      .|+-+.+.+.. ...+..|+++|+++....
T Consensus       141 ~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         141 RIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            99888877755 566799999999988754

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.07  E-value=0.0023  Score=46.48  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++++|+||+|++|...++.+...|++|+.++++.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~   37 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSE   37 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            568999999999999999888888999999988654

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0021  Score=46.87  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+++|+||+|++|...++.+...|++|+.++++.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~   40 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISP   40 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            468899999999999999988888899999988765

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.06  E-value=0.0031  Score=45.29  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|...+..+...|++|+++.+++.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch
Confidence            3568999999999999999999888999877766543

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0019  Score=47.50  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .++||+||+|.+|..+++.+...|++|++++++.+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~   37 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPD   37 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57999999999999988888888999999888653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.05  E-value=0.0022  Score=42.16  Aligned_cols=63  Identities=19%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHHHHHH----------hHc--CCCccEEEeCCChh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLDAALK----------RWF--PQGIDIYFENVGGK   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~~~~~----------~~~--~~~~d~~~d~~g~~   80 (180)
                      .+.+++|.| +|++|.+++..+...|+ +|+.+.|+.++ .+++.+.+.          +..  -..+|+++.|++..
T Consensus        11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~r-a~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPER-AEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG   86 (135)
T ss_dssp             TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHH-HHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence            588999999 79999999999999999 58888887553 122222220          000  01589999988754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.04  E-value=0.0052  Score=47.75  Aligned_cols=37  Identities=32%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            4567899999999999999998888899999998865

>PRK06720 hypothetical protein; Provisional

Probab=97.04  E-value=0.0032  Score=43.06  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|..++|.||++++|...+..+...|++|+.++++.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~   50 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ   50 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            578899999999999998888878899999888754

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0036  Score=46.07  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTA   40 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            467899999999999998888888899999998864

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.04  E-value=0.0021  Score=46.72  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=30.6

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||+  +++|.++++.+...|++|+.++++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            57899999998  799999888888889999988775

>PRK08264 short chain dehydrogenase; Validated

Probab=97.03  E-value=0.0049  Score=44.17  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      .+.+++|+||+|.+|..+++.+...|+ +|+.+.++.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            467899999999999999999988999 9998888654

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0038  Score=44.39  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++|+||+|++|...++.+...|++|+.++++.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~   36 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAA   36 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHH
Confidence            46899999999999988888778999999887744

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.02  E-value=0.0032  Score=45.41  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+.+++|+||+|++|...++.+...|++|+...+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~   35 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG   35 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence            3678999999999999999999889998887554

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.02  E-value=0.0034  Score=45.36  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=29.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+++|+||+|++|...+..+...|++|+.++++
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~   38 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ   38 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence            5789999999999999998888889998876653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.01  E-value=0.006  Score=47.29  Aligned_cols=92  Identities=22%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchH---HHHHHhHcCCCccEEE
Q 041355            6 NLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDL---DAALKRWFPQGIDIYF   74 (180)
Q Consensus         6 ~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~---~~~~~~~~~~~~d~~~   74 (180)
                      ..+.+...+++|++||-.| + +.|..+..+++..|++|++++.+++.        ....+   ...... ..+.||.|+
T Consensus       157 ~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv  233 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV  233 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence            3455667789999999998 5 47888899999889999999988664        00000   000111 134688886


Q ss_pred             eC-----CCh----hhHHHHHHhhccCCEEEEEec
Q 041355           75 EN-----VGG----KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        75 d~-----~g~----~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ..     +|.    ..+..+.+.|+|+|.++....
T Consensus       234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            42     342    246777789999999987643

>PRK06484 short chain dehydrogenase; Validated

Probab=97.01  E-value=0.0023  Score=51.49  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|++++|+||++++|...++.+...|++|+.++++.++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~   41 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVER   41 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            57899999999999999999998899999999886553

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.01  E-value=0.016  Score=39.64  Aligned_cols=78  Identities=19%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+|+|.|++..+|..+++.++..|++|+.+.++.    +++.+.+.     .+|++|.|++.+.+ --...++++-.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~----~~l~~~l~-----~aDiVIsat~~~~i-i~~~~~~~~~v  111 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT----KNLKEHTK-----QADIVIVAVGKPGL-VKGDMVKPGAV  111 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc----hhHHHHHh-----hCCEEEEcCCCCce-ecHHHccCCeE
Confidence            4789999999544579999999999999888777752    23333343     37999999998632 11134666666


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++.+.
T Consensus       112 iIDla~pr  119 (168)
T cd01080         112 VIDVGINR  119 (168)
T ss_pred             EEEccCCC
Confidence            77776654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.99  E-value=0.0025  Score=46.10  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||+|++|...+..+...|++|++++++++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~   35 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQE   35 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6899999999999999988888999999988754

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.98  E-value=0.0028  Score=46.68  Aligned_cols=36  Identities=6%  Similarity=0.059  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++  ++|.++++.+...|++|+.+++++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~   43 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE   43 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch
Confidence            478899999886  999998888888999999887653

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.98  E-value=0.0036  Score=45.24  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc--CCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF--PQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~--~~~~d~~~d~~g~   79 (180)
                      ++++++|+||+|.+|...++.+...|++|++++++...              +.+.+.+.+.+..  .+.+|+++.+.|.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   86 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGI   86 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            46789999999999999999888889999999886611              2222222222221  1468999998874

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.97  E-value=0.003  Score=49.60  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=50.5

Q ss_pred             hHHHHHHHHcC---CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHH----------HHHHhHcCC
Q 041355            3 IVGNLIILVCS---PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLD----------AALKRWFPQ   68 (180)
Q Consensus         3 ~a~~~l~~~~~---~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~----------~~~~~~~~~   68 (180)
                      +++.++.....   -.++.+|+|.| +|.+|.++++.++..|+ +|+++.++.++ ...+.          +.+.+.. .
T Consensus       165 v~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~r-a~~la~~~g~~~~~~~~~~~~l-~  241 (423)
T PRK00045        165 VASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLER-AEELAEEFGGEAIPLDELPEAL-A  241 (423)
T ss_pred             HHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHH-HHHHHHHcCCcEeeHHHHHHHh-c
Confidence            45666633322   25789999999 79999999999999998 78888777554 00111          1111111 2


Q ss_pred             CccEEEeCCChh
Q 041355           69 GIDIYFENVGGK   80 (180)
Q Consensus        69 ~~d~~~d~~g~~   80 (180)
                      ++|++|.|++.+
T Consensus       242 ~aDvVI~aT~s~  253 (423)
T PRK00045        242 EADIVISSTGAP  253 (423)
T ss_pred             cCCEEEECCCCC
Confidence            689999999865

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.97  E-value=0.0037  Score=45.58  Aligned_cols=36  Identities=8%  Similarity=-0.006  Sum_probs=30.8

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+  +++|.++++.+...|++|+.+++++
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            57899999988  4899998888888999998887764

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0041  Score=46.68  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+++|+||++++|.++++.+...|++|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            47899999999999999999888899999998876

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.96  E-value=0.004  Score=40.29  Aligned_cols=83  Identities=18%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             EEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCC-C-CcchH-------------HHHHHhHcCCCccEEEeCCChhhH
Q 041355           19 YVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKE-K-EEPDL-------------DAALKRWFPQGIDIYFENVGGKML   82 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~-~-~~~~~-------------~~~~~~~~~~~~d~~~d~~g~~~~   82 (180)
                      +|.|+|++|-+|..+++.+.. -+.++.+...++. . ..++.             ...+.+.... +|+++|++.-+..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-~DVvIDfT~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-ADVVIDFTNPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--SEEEEES-HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-CCEEEEcCChHHh
Confidence            589999889999999999987 5778766555544 2 11111             1222333222 8999999966666


Q ss_pred             HHHHHhhccCCEEEEEeccc
Q 041355           83 DAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~~~  102 (180)
                      ...++.+...|.-+.+|..+
T Consensus        81 ~~~~~~~~~~g~~~ViGTTG  100 (124)
T PF01113_consen   81 YDNLEYALKHGVPLVIGTTG  100 (124)
T ss_dssp             HHHHHHHHHHT-EEEEE-SS
T ss_pred             HHHHHHHHhCCCCEEEECCC
Confidence            66666666667777776643

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0033  Score=44.84  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||++++|...++.+...|++|+.+.++.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4899999999999999988888999998887644

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.94  E-value=0.0038  Score=44.81  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..+++|+||+|.+|..+++.+...|.+|+.+.+++.
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~   41 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE   41 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence            468999999999999999999889999877666543

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0046  Score=44.98  Aligned_cols=36  Identities=14%  Similarity=0.082  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.+++++
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~   43 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRS   43 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467899999999999998888888899988776643

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.93  E-value=0.0051  Score=46.95  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+|||+||+|.+|..+++.+...|.+|+++.+.+.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            4788999999999999999999888999998887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.93  E-value=0.0039  Score=46.40  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------Cc----c-hHHHHHHhHcCCCccEEEeCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------EE----P-DLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------~~----~-~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      ..+|++||-.| +|+ |..++.+++ +|+ +|++++.++..          +.    . ...........++||+++...
T Consensus       157 ~~~g~~VLDvG-cGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       157 DLKDKNVIDVG-CGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             cCCCCEEEEeC-CCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            45789999999 776 888877776 465 89999988654          00    0 000001111234799998765


Q ss_pred             Chh----hHHHHHHhhccCCEEEEEecc
Q 041355           78 GGK----MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        78 g~~----~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+    .+..+.+.|+|+|.++..+..
T Consensus       234 ~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       234 LAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            443    345667889999999887653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.92  E-value=0.0047  Score=45.92  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=38.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +|||+||+|.+|.+..+.++..|.+++++.+++-.  +...+.+.+.+.   ++|+|+.|.+
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~---~pd~Vin~aa   60 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF---KPDVVINCAA   60 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH-----SEEEE---
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh---CCCeEeccce
Confidence            68999999999999999999989899998666333  222333333332   5899999986

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0032  Score=46.14  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||+|++|...++.+...|++|+.++++.+
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~   35 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE   35 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6899999999999988888888999999887654

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.91  E-value=0.0043  Score=44.77  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS   47 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~   47 (180)
                      ++.+++|+||+|++|..++..+...|++|+..
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~   34 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVN   34 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            46789999999999999999998899988764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.89  E-value=0.004  Score=44.75  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.+++|+||+|.+|..+++.+...|+.|+...++.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~   41 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVE   41 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4678999999999999988888888998887766543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.89  E-value=0.0078  Score=49.08  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..++|++|+|.| +|++|+++++.++..|++|+++...+
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            367899999999 89999999999999999988887543

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0038  Score=45.95  Aligned_cols=36  Identities=22%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +..+++|+||+|++|...++.+...|++|++++++.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~   44 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRV   44 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            346899999999999999988888899998888754

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.0062  Score=44.95  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|+.|||+||++++|.+.++-...+|+.++..+.+.+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~   74 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQG   74 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccc
Confidence            68999999999999988777777778877766666543

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0044  Score=44.60  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=31.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++|+||+|++|...++.+...|++|++++++++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~   36 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVE   36 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            47999999999999999888888999999988764

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.0048  Score=44.97  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             CCCEEEEecC--CchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAA--SGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga--~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||  ++++|.+.++.+...|++|+.++++.
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            4678999998  79999998888888999999887653

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.87  E-value=0.0019  Score=43.60  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=26.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ++++|+||++++|...++.+-..|. .|+.+.++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            3689999999999998877777777 56666665

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.87  E-value=0.0051  Score=47.98  Aligned_cols=37  Identities=32%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|.+.++.+...|++|++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~  213 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD  213 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999998888888999999887654

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0063  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~   41 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYN   41 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecC
Confidence            46789999999999999998888889987766643

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.87  E-value=0.0034  Score=45.40  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.++||+||+|.+|...+..+...|++|++++++.+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~   36 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEA   36 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357999999999999999888888999999988754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.87  E-value=0.0052  Score=44.29  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||+|++|...++.+...|++|+++.++
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~   39 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNS   39 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            47899999999999999888888889998876553

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.87  E-value=0.0052  Score=44.50  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++|+||+|++|..+++.+...|++|+.+++++
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            5799999999999999888888899999988764

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.85  E-value=0.0062  Score=45.67  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||++++|...++.+...|++|+++++..
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~   46 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS   46 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence            478899999999999998888888899999887643

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.85  E-value=0.018  Score=43.43  Aligned_cols=84  Identities=10%  Similarity=0.059  Sum_probs=57.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc--chH--HHHHHhHcCCCccEEEeCCChh--h---H-HHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--PDL--DAALKRWFPQGIDIYFENVGGK--M---L-DAV   85 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~--~~~--~~~~~~~~~~~~d~~~d~~g~~--~---~-~~~   85 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++..++.....  ..+  ...+.+... ..|+++-++...  +   + ...
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~-~aDvvv~~lPlt~~T~~li~~~~  212 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLS-QTRVLINLLPNTPETVGIINQQL  212 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHh-cCCEEEECCCCCHHHHHHhHHHH
Confidence            578999999 999999999999999999999887654310  000  111222211 468998887632  1   2 245


Q ss_pred             HHhhccCCEEEEEecc
Q 041355           86 LLNMRLRGRIAVSSII  101 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~~  101 (180)
                      +..++++..+++++-.
T Consensus       213 l~~mk~ga~lIN~aRG  228 (312)
T PRK15469        213 LEQLPDGAYLLNLARG  228 (312)
T ss_pred             HhcCCCCcEEEECCCc
Confidence            6788999988888653

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.85  E-value=0.0038  Score=46.11  Aligned_cols=58  Identities=22%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-CcchHHHHHHhHcCC-CccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-EEPDLDAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~~~~~~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      +|+|+||+|.+|..+++.+...|.+|+++.++... .+.   +.+.+...+ .+|++++|.+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~---~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDP---EALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCH---HHHHHHHHhCCCCEEEECCcc
Confidence            48999999999999999998889999998886332 221   223333333 68999998863

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.85  E-value=0.0065  Score=44.34  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=29.8

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||+  +++|.++++.+-..|++|+.++++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            47889999987  799999888888889999988654

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.84  E-value=0.005  Score=44.42  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++++|+||+|++|..+++.+...|++|+.+.++
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~   35 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYAR   35 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            479999999999999988888889998776543

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.84  E-value=0.0057  Score=43.72  Aligned_cols=62  Identities=21%  Similarity=0.336  Sum_probs=44.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHH---HHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLD---AALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~---~~~~~~~~~~~d~~~d~~g   78 (180)
                      .+.+++|+||+|++|...+..+...|++|+++.++...        ...|+.   +.+.+.. +++|+++.+.|
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~id~lv~~ag   76 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWV-PSVDILCNTAG   76 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhh-CCCCEEEECCC
Confidence            46789999999999999888888889999988876543        111222   2222222 36899998887

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.83  E-value=0.0052  Score=44.06  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=29.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++++|+||+|++|...++.+...|++|+++.++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   33 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGP   33 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            368999999999999998888899999888873

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.83  E-value=0.018  Score=42.62  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=52.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------Cc-chHHHHHHhHcC-CC-ccEEEeCCChh--
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EE-PDLDAALKRWFP-QG-IDIYFENVGGK--   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~-~~~~~~~~~~~~-~~-~d~~~d~~g~~--   80 (180)
                      +|+|+||+|.+|..+++.+...|.+|.+.+|++++             .+ ..+...++.... .+ +|.+|-+.+..  
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~   80 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD   80 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence            48999999999999999888889999999998753             11 122222221111 25 89988776631  


Q ss_pred             ---hHHHHHHhhccCC--EEEEEec
Q 041355           81 ---MLDAVLLNMRLRG--RIAVSSI  100 (180)
Q Consensus        81 ---~~~~~~~~l~~~G--~~v~~~~  100 (180)
                         .....+..++..|  +++.++.
T Consensus        81 ~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        81 LAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             hhHHHHHHHHHHHHcCCCEEEEeec
Confidence               2334444444444  6777754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.83  E-value=0.0052  Score=44.77  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---CcchHHH-HH---HhHcCC--CccEEEeCCChh---
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---EEPDLDA-AL---KRWFPQ--GIDIYFENVGGK---   80 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---~~~~~~~-~~---~~~~~~--~~d~~~d~~g~~---   80 (180)
                      +.++++||-.| +|+ |..++.+++ .|+ +|++++.++..   ..+.... .+   .....+  .||+++-....+   
T Consensus       117 ~~~~~~VLDiG-cGs-G~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~  193 (250)
T PRK00517        117 VLPGKTVLDVG-CGS-GILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLL  193 (250)
T ss_pred             cCCCCEEEEeC-CcH-HHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHH
Confidence            56899999999 776 888876555 566 69999887654   0001100 01   001122  489998766544   


Q ss_pred             -hHHHHHHhhccCCEEEEEecc
Q 041355           81 -MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        81 -~~~~~~~~l~~~G~~v~~~~~  101 (180)
                       .+..+.+.|+++|+++..+..
T Consensus       194 ~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        194 ELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHHHHHHhcCCCcEEEEEECc
Confidence             345667889999999987653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.83  E-value=0.0056  Score=44.46  Aligned_cols=87  Identities=18%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+.+|+|+||+|.+|..+++.+...|.+|+++.++.++                +-.+....+.+....++|++|.+.|.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~   95 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF   95 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            35789999999999999988887789999988876432                00111122333332368999988763


Q ss_pred             h--------------hHHHHHHhhcc--CCEEEEEeccc
Q 041355           80 K--------------MLDAVLLNMRL--RGRIAVSSIIS  102 (180)
Q Consensus        80 ~--------------~~~~~~~~l~~--~G~~v~~~~~~  102 (180)
                      .              ....+++.++.  .++++.+++..
T Consensus        96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~  134 (251)
T PLN00141         96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSIL  134 (251)
T ss_pred             CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            1              12334444433  36888877654

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.82  E-value=0.0066  Score=44.49  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=29.7

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+++|+||++  ++|.++++.+-..|++|+.++++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            478899999875  89999888888889999887765

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.81  E-value=0.0044  Score=45.29  Aligned_cols=35  Identities=6%  Similarity=0.113  Sum_probs=29.2

Q ss_pred             CCCEEEEecC--CchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAA--SGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga--~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+++|+||  ++++|.+.++.+...|++|+.+.+.
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~   41 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVV   41 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            4678999996  6699999888888899999887654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.81  E-value=0.019  Score=36.90  Aligned_cols=81  Identities=14%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCCCcchHHHHHH-----------h---HcCCCccEEEeCCChhhHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKEEPDLDAALK-----------R---WFPQGIDIYFENVGGKMLD   83 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~~~~~~~~~~~-----------~---~~~~~~d~~~d~~g~~~~~   83 (180)
                      +|.|.||+|-+|..+++++..+ .++++.+.++.......+.....           +   ..-.++|++|.|.+.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            5899999999999999888765 55766655554420001110000           0   0003689999999988555


Q ss_pred             HHHHh-hccCCEEEEEe
Q 041355           84 AVLLN-MRLRGRIAVSS   99 (180)
Q Consensus        84 ~~~~~-l~~~G~~v~~~   99 (180)
                      ..... ++.+-+++...
T Consensus        81 ~~~~~~~~~g~~ViD~s   97 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLS   97 (121)
T ss_dssp             HHHHHHHHTTSEEEESS
T ss_pred             HHHHHHhhCCcEEEeCC
Confidence            55544 45665666653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.80  E-value=0.01  Score=43.87  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|.+++|.|.+..+|.-...++...|++|..+.+.    ..++.+.+++     .|+++-++|.+.+-.. ..++++..+
T Consensus       157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~----t~~l~~~~~~-----ADIVV~avG~~~~i~~-~~ik~gavV  226 (285)
T PRK14189        157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK----TRDLAAHTRQ-----ADIVVAAVGKRNVLTA-DMVKPGATV  226 (285)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC----CCCHHHHhhh-----CCEEEEcCCCcCccCH-HHcCCCCEE
Confidence            79999999988888999999999999999875442    3345444544     7999999997743222 789999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       227 IDVGin~  233 (285)
T PRK14189        227 IDVGMNR  233 (285)
T ss_pred             EEccccc
Confidence            9998754

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.80  E-value=0.014  Score=44.01  Aligned_cols=82  Identities=21%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C-------cchH--HHHHHhHcCCCccEEEeCCChh-----
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E-------EPDL--DAALKRWFPQGIDIYFENVGGK-----   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~-------~~~~--~~~~~~~~~~~~d~~~d~~g~~-----   80 (180)
                      +|+|+||+|-+|...++.+...|.+|++.+++.+.    .       ..|+  .+.+.+... ++|+++.+++..     
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~-g~d~Vi~~~~~~~~~~~   80 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK-GVTAIIDASTSRPSDLY   80 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC-CCCEEEECCCCCCCCcc
Confidence            69999999999999999888889999999987432    0       0011  122333322 589999987531     


Q ss_pred             h--------HHHHHHhhccCC--EEEEEecc
Q 041355           81 M--------LDAVLLNMRLRG--RIAVSSII  101 (180)
Q Consensus        81 ~--------~~~~~~~l~~~G--~~v~~~~~  101 (180)
                      .        ...+++.++..|  +++.++..
T Consensus        81 ~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         81 NAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             chhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            0        123344444444  78877664

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.80  E-value=0.0067  Score=42.16  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=45.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchHHHHHHhHcC--CCccE
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDLDAALKRWFP--QGIDI   72 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~~~~~~~~~~--~~~d~   72 (180)
                      .+..+|+||++++|.+..|.+-..|++|.+.+...+.                      +..+....+.+..+  +.+++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv   93 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV   93 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence            4557899999999999999999999999988877554                      12222222333322  37899


Q ss_pred             EEeCCC
Q 041355           73 YFENVG   78 (180)
Q Consensus        73 ~~d~~g   78 (180)
                      +++|.|
T Consensus        94 lVncAG   99 (256)
T KOG1200|consen   94 LVNCAG   99 (256)
T ss_pred             EEEcCc
Confidence            999998

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.78  E-value=0.0045  Score=44.67  Aligned_cols=39  Identities=18%  Similarity=0.182  Sum_probs=33.9

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..++.+++|+||+|++|...++.+...|++|++++++.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~   47 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEE   47 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHH
Confidence            457889999999999999988888888999999988753

>TIGR02415 23BDH acetoin reductases

Probab=96.77  E-value=0.0051  Score=44.51  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++|+||+|++|...++.+...|++|+.+.+++.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~   35 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE   35 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999888889999999888743

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.76  E-value=0.0059  Score=45.04  Aligned_cols=36  Identities=8%  Similarity=0.021  Sum_probs=30.7

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+  +++|.++++.+-..|++|+.++++.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~   41 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE   41 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH
Confidence            47899999987  7999998888888899999887763

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.76  E-value=0.0089  Score=46.89  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=46.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHH----------HHHHhHcCCCccEEEeCCChh
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLD----------AALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~----------~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      ..-++++++|+| +|.+|..+++.++..|+ +|+++.++.++ ...+.          +.+.+.. .++|++|.|++..
T Consensus       176 ~~l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~r-a~~la~~~g~~~i~~~~l~~~l-~~aDvVi~aT~s~  251 (417)
T TIGR01035       176 GSLKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYER-AEDLAKELGGEAVKFEDLEEYL-AEADIVISSTGAP  251 (417)
T ss_pred             CCccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHH-HHHHHHHcCCeEeeHHHHHHHH-hhCCEEEECCCCC
Confidence            346789999999 79999999999999995 88888887554 00011          1111111 2689999999865

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.76  E-value=0.0075  Score=44.02  Aligned_cols=35  Identities=14%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||+  +++|.++++.+...|++|+.+.++
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            47889999976  799999888888899998877543

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0081  Score=43.19  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||+|++|...++.+...|++|+.+++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~   39 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH   39 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence            35789999999999999888888889998886653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.75  E-value=0.021  Score=42.39  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|+++-+|....+++...|++|.++.+.    ..++.+.+     .++|+++.|+|.+.+- -...++++..
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~----t~~L~~~~-----~~aDIvI~AtG~~~~v-~~~~lk~gav  226 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR----TQNLPELV-----KQADIIVGAVGKPELI-KKDWIKQGAV  226 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC----chhHHHHh-----ccCCEEEEccCCCCcC-CHHHcCCCCE
Confidence            478999999965569999999999999976665552    23333333     2589999999866321 1256889988


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       227 ViDvg~n~  234 (283)
T PRK14192        227 VVDAGFHP  234 (283)
T ss_pred             EEEEEEee
Confidence            88887643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.74  E-value=0.013  Score=37.30  Aligned_cols=89  Identities=18%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-----------CcchH--H-H---HHHhHcCCCc
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-----------EEPDL--D-A---ALKRWFPQGI   70 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-----------~~~~~--~-~---~~~~~~~~~~   70 (180)
                      .....+.++++++-.| +|. |..+..+++..+ .+|++++.++..           ..++.  . .   .......+.+
T Consensus        12 ~~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            3455677888999998 655 999999998875 589999987654           00000  0 0   0001112378


Q ss_pred             cEEEeCCChh----hHHHHHHhhccCCEEEEEe
Q 041355           71 DIYFENVGGK----MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~d~~g~~----~~~~~~~~l~~~G~~v~~~   99 (180)
                      |+++-..+..    .+..+.+.|+++|+++...
T Consensus        90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            9988654322    5677888999999998653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.73  E-value=0.021  Score=43.16  Aligned_cols=80  Identities=16%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCCCccEEEeCCCh-h-h---H-HHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQGIDIYFENVGG-K-M---L-DAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~d~~g~-~-~---~-~~~~   86 (180)
                      .|.++.|+| .|.+|...++.++.+|.+|++..++...   ...++.+-+.     ..|++.-++.. + +   + ...+
T Consensus       147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~-----~sDiv~l~lPlt~~T~~li~~~~~  220 (317)
T PRK06487        147 EGKTLGLLG-HGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLP-----QVDALTLHCPLTEHTRHLIGAREL  220 (317)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHH-----hCCEEEECCCCChHHhcCcCHHHH
Confidence            577999999 9999999999999999999988765322   1112222222     35888776652 2 1   1 3556


Q ss_pred             HhhccCCEEEEEecc
Q 041355           87 LNMRLRGRIAVSSII  101 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~  101 (180)
                      ..++++..+++++-.
T Consensus       221 ~~mk~ga~lIN~aRG  235 (317)
T PRK06487        221 ALMKPGALLINTARG  235 (317)
T ss_pred             hcCCCCeEEEECCCc
Confidence            788888888888653

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.72  E-value=0.035  Score=41.14  Aligned_cols=83  Identities=22%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|.+++|.|.+.-+|.-+..++...|++|.++.+    ..+++.+.+++     .|+++-++|.+.+-. -..
T Consensus       149 ~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs----~t~~l~~~~~~-----ADIvV~AvG~p~~i~-~~~  218 (285)
T PRK14191        149 KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI----LTKDLSFYTQN-----ADIVCVGVGKPDLIK-ASM  218 (285)
T ss_pred             HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC----CcHHHHHHHHh-----CCEEEEecCCCCcCC-HHH
Confidence            434444 6999999998889999999999999999876543    23445444554     799999999874422 246


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       219 vk~GavVIDvGi~~  232 (285)
T PRK14191        219 VKKGAVVVDIGINR  232 (285)
T ss_pred             cCCCcEEEEeeccc
Confidence            79999999998743

>PRK06849 hypothetical protein; Provisional

Probab=96.72  E-value=0.016  Score=44.95  Aligned_cols=79  Identities=14%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcCC-CccEEEe
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      ...+|||+|+..++|+..++.++..|.+|+++++.+..                   +.+.+.+.+.+.... ++|+++-
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP   82 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP   82 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            45789999988889999999999999999999887543                   123455666665554 7888887


Q ss_pred             CCChh-hHHHHHHhhccCCE
Q 041355           76 NVGGK-MLDAVLLNMRLRGR   94 (180)
Q Consensus        76 ~~g~~-~~~~~~~~l~~~G~   94 (180)
                      +.... .+......+.++.+
T Consensus        83 ~~e~~~~~a~~~~~l~~~~~  102 (389)
T PRK06849         83 TCEEVFYLSHAKEELSAYCE  102 (389)
T ss_pred             CChHHHhHHhhhhhhcCCcE
Confidence            76643 22222334544433

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.0065  Score=44.39  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+.++|+||++  ++|.++++.+...|++|+.++++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            578899999987  89999888887889999888765

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.70  E-value=0.037  Score=40.98  Aligned_cols=83  Identities=19%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +..++. .|++++|.|.+.-+|.-..+++...|++|.++.+.    ..++.+.+++     .|+++.++|.+.+-. -..
T Consensus       151 ~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~----T~~l~~~~~~-----ADIvi~avG~p~~v~-~~~  220 (285)
T PRK10792        151 ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF----TKNLRHHVRN-----ADLLVVAVGKPGFIP-GEW  220 (285)
T ss_pred             HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC----CCCHHHHHhh-----CCEEEEcCCCccccc-HHH
Confidence            444443 69999999988889999999999999998877653    3344444444     799999999874322 267


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       221 vk~gavVIDvGin~  234 (285)
T PRK10792        221 IKPGAIVIDVGINR  234 (285)
T ss_pred             cCCCcEEEEccccc
Confidence            89999999998643

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.70  E-value=0.015  Score=43.76  Aligned_cols=80  Identities=20%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc-----chHHHHHHhHcCCCccEEEeCCC-hh-h----HHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-----PDLDAALKRWFPQGIDIYFENVG-GK-M----LDA   84 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~d~~g-~~-~----~~~   84 (180)
                      .|.++.|.| .|.+|...++.++.+|.+|++.+++.....     .++.+-+.     ..|++.-++. ++ +    -..
T Consensus       144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~-----~sDvv~lh~Plt~~T~~li~~~  217 (311)
T PRK08410        144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLK-----TSDIISIHAPLNEKTKNLIAYK  217 (311)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhh-----cCCEEEEeCCCCchhhcccCHH
Confidence            578999999 999999999999999999999887543211     12222222     2578776654 22 1    145


Q ss_pred             HHHhhccCCEEEEEecc
Q 041355           85 VLLNMRLRGRIAVSSII  101 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~  101 (180)
                      .+..++++..+++++-.
T Consensus       218 ~~~~Mk~~a~lIN~aRG  234 (311)
T PRK08410        218 ELKLLKDGAILINVGRG  234 (311)
T ss_pred             HHHhCCCCeEEEECCCc
Confidence            66788999999988653

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.69  E-value=0.048  Score=36.06  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=60.2

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-+++ .|.+|+|+|.+..+|.-+..++...|++|..+.+.    ..++.+.+++     .|+++-++|...+- --..
T Consensus        20 ~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~----t~~l~~~v~~-----ADIVvsAtg~~~~i-~~~~   89 (140)
T cd05212          20 NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK----TIQLQSKVHD-----ADVVVVGSPKPEKV-PTEW   89 (140)
T ss_pred             HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC----CcCHHHHHhh-----CCEEEEecCCCCcc-CHHH
Confidence            333443 79999999999999999999999999999887653    2344444444     79999999976321 1256


Q ss_pred             hccCCEEEEEec
Q 041355           89 MRLRGRIAVSSI  100 (180)
Q Consensus        89 l~~~G~~v~~~~  100 (180)
                      ++++-.++.++.
T Consensus        90 ikpGa~Vidvg~  101 (140)
T cd05212          90 IKPGATVINCSP  101 (140)
T ss_pred             cCCCCEEEEcCC
Confidence            899988887765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.69  E-value=0.083  Score=39.14  Aligned_cols=77  Identities=13%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|.+..+|.-...++...|+.|..+.+.    ..++.+..++     .|+++-++|...+-. -..++++..
T Consensus       157 l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~----T~~l~~~~~~-----ADIvIsAvGk~~~i~-~~~ik~gav  226 (284)
T PRK14177        157 VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK----TQNLPSIVRQ-----ADIIVGAVGKPEFIK-ADWISEGAV  226 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEeCCCcCccC-HHHcCCCCE
Confidence            379999999999999999999999999988866542    3445544544     799999999875422 368899999


Q ss_pred             EEEEecc
Q 041355           95 IAVSSII  101 (180)
Q Consensus        95 ~v~~~~~  101 (180)
                      ++.+|..
T Consensus       227 VIDvGin  233 (284)
T PRK14177        227 LLDAGYN  233 (284)
T ss_pred             EEEecCc
Confidence            9999874

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.011  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||+|++|..+++.+...|++|+.++++.+
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~   36 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH   36 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc
Confidence            6899999999999998888888999998887643

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.68  E-value=0.0074  Score=45.43  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~   52 (180)
                      +.+++|+||++++|..+++.+...| ++|+.++++.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~   39 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFL   39 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            5689999999999999888777789 89999887643

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.0087  Score=43.31  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~   50 (180)
                      .+.+++|+||+|++|..+++.+...|++|++. .++
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~   40 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRN   40 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35789999999999999998888889988765 443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.0062  Score=44.89  Aligned_cols=97  Identities=26%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHH----HhH--cCCCc
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAAL----KRW--FPQGI   70 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~----~~~--~~~~~   70 (180)
                      ...+.+..++++|+++|=+| || =|.+++-.|+.+|++|++++-|++.        ....+...+    ..+  ..+.|
T Consensus        61 ~~~~~~kl~L~~G~~lLDiG-CG-WG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f  138 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIG-CG-WGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF  138 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeC-CC-hhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence            34556778899999999998 55 4788899999999999999999775        000111001    110  11246


Q ss_pred             cEEE-----eCCChh----hHHHHHHhhccCCEEEEEecccc
Q 041355           71 DIYF-----ENVGGK----MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        71 d~~~-----d~~g~~----~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      |-|+     +-+|.+    .+..+-+.|+|+|++........
T Consensus       139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence            6653     344542    45677789999999988776553

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.0072  Score=43.40  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~~   51 (180)
                      +.+++|+||+|++|...+..+...|++|+.+ .++.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4689999999999999888777789998888 6654

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.0096  Score=42.85  Aligned_cols=35  Identities=14%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++|+||+|++|..++..+...|++|++++++++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~   36 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQS   36 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            46899999999999888777778999999988653

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.0081  Score=44.26  Aligned_cols=37  Identities=8%  Similarity=0.047  Sum_probs=31.0

Q ss_pred             CCCCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 041355           14 PKKGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        14 ~~~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +-.|++++|+||+  +++|.++++.+...|++|+.+.++
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~   45 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG   45 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            3457899999986  799999888888899999887765

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.64  E-value=0.019  Score=43.30  Aligned_cols=80  Identities=19%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--C--cchHHHHHHhHcCCCccEEEeCCC-hh-h---H-HHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--E--EPDLDAALKRWFPQGIDIYFENVG-GK-M---L-DAV   85 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~--~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---~-~~~   85 (180)
                      .|.++.|.| .|.+|....+.++.+|.+|++..+....  .  ..++.+-+.     ..|++.-++. ++ +   + ...
T Consensus       146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~-----~sDiv~l~~Plt~~T~~li~~~~  219 (314)
T PRK06932        146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLK-----QADIVTLHCPLTETTQNLINAET  219 (314)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHH-----hCCEEEEcCCCChHHhcccCHHH
Confidence            478999999 9999999999999999999988765322  1  112222222     3688877665 22 2   1 355


Q ss_pred             HHhhccCCEEEEEecc
Q 041355           86 LLNMRLRGRIAVSSII  101 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~~  101 (180)
                      +..++++..+++++-.
T Consensus       220 l~~mk~ga~lIN~aRG  235 (314)
T PRK06932        220 LALMKPTAFLINTGRG  235 (314)
T ss_pred             HHhCCCCeEEEECCCc
Confidence            6788999999988653

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.0055  Score=50.72  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      |.+++|+||+|++|..+++.+...|++|++++++++
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~  406 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGE  406 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            678999999999999988888888999999988754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.63  E-value=0.027  Score=38.00  Aligned_cols=80  Identities=6%  Similarity=0.057  Sum_probs=51.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHH-----HHHh-HcC---CCccEEEeCCChhhHHHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA-----ALKR-WFP---QGIDIYFENVGGKMLDAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~-----~~~~-~~~---~~~d~~~d~~g~~~~~~~~   86 (180)
                      .|.+|+|.| +|.+|..-++.+...|++|.++...  . .+++.+     ...+ ...   .++|+++-+.+.+..+..+
T Consensus        12 ~~~~vlVvG-GG~va~rka~~Ll~~ga~V~VIsp~--~-~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i   87 (157)
T PRK06719         12 HNKVVVIIG-GGKIAYRKASGLKDTGAFVTVVSPE--I-CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMV   87 (157)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCc--c-CHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHH
Confidence            578899999 8999998888888889988877422  1 111111     0011 111   2689999999988777766


Q ss_pred             HhhccCCEEEEEe
Q 041355           87 LNMRLRGRIAVSS   99 (180)
Q Consensus        87 ~~l~~~G~~v~~~   99 (180)
                      ...+..+.+++..
T Consensus        88 ~~~a~~~~~vn~~  100 (157)
T PRK06719         88 KQAAHDFQWVNVV  100 (157)
T ss_pred             HHHHHHCCcEEEC
Confidence            6555444455543

>PRK05855 short chain dehydrogenase; Validated

Probab=96.62  E-value=0.0061  Score=49.47  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|...++-+...|++|+.++++.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~  350 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA  350 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999999999988888889999999888753

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.60  E-value=0.012  Score=42.33  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEe
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSA   48 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~   48 (180)
                      .+++|+||+|++|...++.+...|++|+++.
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~   32 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNY   32 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence            3689999999999999988888899987654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.59  E-value=0.013  Score=34.58  Aligned_cols=57  Identities=19%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      +++|.| +|.+|+-+++.++.+|.+|..+.+++.-   -+++....+.+.... ++++.+++
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~   61 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT   61 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred             CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence            578999 8999999999999999999999988775   334444444443322 56665543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.59  E-value=0.0067  Score=50.53  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~  449 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLE  449 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            3688999999999999999888888999999988643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.58  E-value=0.006  Score=38.10  Aligned_cols=80  Identities=20%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC----CC---CcchHHHHHHhHcCCCccEEEeCCChhhHHHHH-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK----EK---EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVL-L   87 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~----~~---~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~-~   87 (180)
                      .|.+|||.| .|.+|..-++.+...|++|.+++...    +.   ....+    .+.. .++++++-|.+.+.++..+ .
T Consensus         6 ~~~~vlVvG-gG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~----~~~l-~~~~lV~~at~d~~~n~~i~~   79 (103)
T PF13241_consen    6 KGKRVLVVG-GGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREF----EEDL-DGADLVFAATDDPELNEAIYA   79 (103)
T ss_dssp             TT-EEEEEE-ESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-----GGGC-TTESEEEE-SS-HHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhH----HHHH-hhheEEEecCCCHHHHHHHHH
Confidence            578899999 79999999999999999999988873    11   11122    1111 2689999999988665544 5


Q ss_pred             hhccCCEEEEEecc
Q 041355           88 NMRLRGRIAVSSII  101 (180)
Q Consensus        88 ~l~~~G~~v~~~~~  101 (180)
                      ..+..|.++++...
T Consensus        80 ~a~~~~i~vn~~D~   93 (103)
T PF13241_consen   80 DARARGILVNVVDD   93 (103)
T ss_dssp             HHHHTTSEEEETT-
T ss_pred             HHhhCCEEEEECCC
Confidence            56678999888553

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.58  E-value=0.016  Score=41.31  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc------------ch--HHHHHHhHcCC-CccEEEeCCCh
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------------PD--LDAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~------------~~--~~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      |||+||+|-+|..++..+...|..|+...+++....            .+  -.+.+.+.... .+|.++.+.+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeecc
Confidence            799999999999999999999999888888776510            00  12233333333 78999998774

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.0099  Score=42.84  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=28.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+++|+||+|++|..+++.+...|++|+.+.++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~   35 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLR   35 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            4579999999999999888888889988766543

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.57  E-value=0.011  Score=42.51  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++++|+||+|++|..+++.+...|++|+.+++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4789999999999998888887899999998874

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.53  E-value=0.016  Score=42.41  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+++|+||++++|...++.+-..|++|+.++++
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~   34 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHR   34 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCC
Confidence            468999999999999999888899999987654

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.52  E-value=0.0079  Score=44.95  Aligned_cols=58  Identities=9%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~~g   78 (180)
                      +|||+||+|-+|...++.+...| +|+++++....   +-.+ .+.+.+...+ ++|++|.|.+
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~Vih~Aa   63 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHSTDYCGDFSN-PEGVAETVRKIRPDVIVNAAA   63 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccccccCCCCC-HHHHHHHHHhcCCCEEEECCc
Confidence            69999999999999999888778 78887775432   1111 1223333333 6899999876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.52  E-value=0.0027  Score=44.96  Aligned_cols=92  Identities=20%  Similarity=0.210  Sum_probs=58.4

Q ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCCCcchHHHHHHh----------------Hc-
Q 041355            6 NLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEKEEPDLDAALKR----------------WF-   66 (180)
Q Consensus         6 ~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~~~~~~~~~~~~----------------~~-   66 (180)
                      ..+.+...+++|++||-.|  ++.|+.+.-+++..|-  .|+.+.+.+.-. +.....+..                +. 
T Consensus        62 a~~l~~L~l~pg~~VLeIG--tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIG--TGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGIDNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred             HHHHHHHhcCCCCEEEEec--CCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccCceeEEEcchhhcccc
Confidence            3344677899999999998  3468888889998875  588777754420 000011110                00 


Q ss_pred             CCCccEEEeCCChhhH-HHHHHhhccCCEEEEEec
Q 041355           67 PQGIDIYFENVGGKML-DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~-~~~~~~l~~~G~~v~~~~  100 (180)
                      .+.||.|+-+.+-+.. ...+..|+++|+++..-.
T Consensus       139 ~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             G-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred             CCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence            1268999888776643 567789999999998644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.51  E-value=0.0044  Score=50.12  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=35.4

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+.|++|+|+||+|.+|..+++.+...|++|++++++.+
T Consensus        75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            34468899999999999999999988888999999888654

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.036  Score=40.88  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++.++|+|+ |++|..++..+. .|++|+.++++.+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~   35 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEE   35 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            457889996 799999888774 7999999988643

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.49  E-value=0.038  Score=39.32  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC-------------Cc-------chHHHHHHhHcC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK-------------EE-------PDLDAALKRWFP   67 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~-------------~~-------~~~~~~~~~~~~   67 (180)
                      ...+.....+||-.|  +++|+.++.+|..+.  .+++++..++++             .+       .+..+.+.+...
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~  130 (219)
T COG4122          53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD  130 (219)
T ss_pred             HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC
Confidence            344556778899887  668999999999876  478888887775             11       244445555334


Q ss_pred             CCccEEEeCCC-hh---hHHHHHHhhccCCEEEEE
Q 041355           68 QGIDIYFENVG-GK---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        68 ~~~d~~~d~~g-~~---~~~~~~~~l~~~G~~v~~   98 (180)
                      +.||++|-=.. ..   .++.+++.|+++|-++.=
T Consensus       131 ~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         131 GSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            58999865444 22   688899999999988764

>PLN00016 RNA-binding protein; Provisional

Probab=96.46  E-value=0.034  Score=43.00  Aligned_cols=85  Identities=19%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             CCEEEEe----cCCchHHHHHHHHHHHcCCEEEEEeCCCCCC----------------------cchHHHHHHhHcCC-C
Q 041355           17 GEYVYVS----AASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----------------------EPDLDAALKRWFPQ-G   69 (180)
Q Consensus        17 g~~vlI~----Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~----------------------~~~~~~~~~~~~~~-~   69 (180)
                      ..+|||+    ||+|-+|..+++.+...|.+|++++++....                      ..++.+ +.+.... +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~~~~~~~  130 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD-VKSKVAGAG  130 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH-HHhhhccCC
Confidence            4679999    9999999999998888899999999876420                      011211 2222233 7


Q ss_pred             ccEEEeCCChh--hHHHHHHhhccCC--EEEEEeccc
Q 041355           70 IDIYFENVGGK--MLDAVLLNMRLRG--RIAVSSIIS  102 (180)
Q Consensus        70 ~d~~~d~~g~~--~~~~~~~~l~~~G--~~v~~~~~~  102 (180)
                      +|+++++.+.+  ....++..++..|  +++.+++..
T Consensus       131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~  167 (378)
T PLN00016        131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAG  167 (378)
T ss_pred             ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHh
Confidence            99999998754  3445556554333  788776654

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.0087  Score=43.44  Aligned_cols=63  Identities=25%  Similarity=0.396  Sum_probs=44.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------Cc------chH--HHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EE------PDL--DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~------~~~--~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .|.+++|+||+|++|..+++.+...|++|+++++++..      ..      -|+  .+.+.+.. +++|+++.+.|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQL-ASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhc-CCCCEEEECCcc
Confidence            36899999999999999999888899999998886521      00      000  11222222 369999999874

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.45  E-value=0.014  Score=42.33  Aligned_cols=35  Identities=20%  Similarity=0.103  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||++  ++|...+..+...|++|++++++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            457899999884  89999888877789999998876

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.44  E-value=0.061  Score=39.92  Aligned_cols=82  Identities=17%  Similarity=0.031  Sum_probs=61.8

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +..++. .|.+++|.|.+.-+|.-...++...|++|.++.+.    ..++.+..++     .|+++.++|.+.+- --..
T Consensus       156 ~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~----T~~l~~~~~~-----ADIvv~AvG~p~~i-~~~~  225 (287)
T PRK14176        156 EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF----TDDLKKYTLD-----ADILVVATGVKHLI-KADM  225 (287)
T ss_pred             HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc----CCCHHHHHhh-----CCEEEEccCCcccc-CHHH
Confidence            444454 79999999988889999999999999988766642    2344444443     79999999987432 2357


Q ss_pred             hccCCEEEEEecc
Q 041355           89 MRLRGRIAVSSII  101 (180)
Q Consensus        89 l~~~G~~v~~~~~  101 (180)
                      ++++..++.+|..
T Consensus       226 vk~gavVIDvGin  238 (287)
T PRK14176        226 VKEGAVIFDVGIT  238 (287)
T ss_pred             cCCCcEEEEeccc
Confidence            8999999999874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.44  E-value=0.045  Score=37.81  Aligned_cols=85  Identities=24%  Similarity=0.349  Sum_probs=56.4

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC------C------------cchHHHHHHhHcCC-Cc
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK------E------------EPDLDAALKRWFPQ-GI   70 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~------~------------~~~~~~~~~~~~~~-~~   70 (180)
                      ..++++|+.++=.|+  +.|...+++++... .+|+++.++++.      +            ..+-.+.+.   +- .+
T Consensus        29 ~L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~---~~~~~  103 (187)
T COG2242          29 KLRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP---DLPSP  103 (187)
T ss_pred             hhCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc---CCCCC
Confidence            346789997776774  34778889995543 499999998775      0            001111111   11 58


Q ss_pred             cEEEeCCChh---hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGGK---MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~~---~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |.+|--=|..   .++.++..|+++|++|....
T Consensus       104 daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242         104 DAIFIGGGGNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             CEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence            8888544322   68889999999999988754

>PLN02928 oxidoreductase family protein

Probab=96.43  E-value=0.029  Score=42.94  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcch-----------H------HHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPD-----------L------DAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~-----------~------~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .|.++.|+| .|.+|..+++.++.+|++|++..++.......           +      ...+.+.. ...|+++-++.
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell-~~aDiVvl~lP  235 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFA-GEADIVVLCCT  235 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHH-hhCCEEEECCC
Confidence            478999999 99999999999999999999988763210000           0      00111111 13689888775


Q ss_pred             h-h-h---H-HHHHHhhccCCEEEEEec
Q 041355           79 G-K-M---L-DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        79 ~-~-~---~-~~~~~~l~~~G~~v~~~~  100 (180)
                      . + +   + ...+..++++..+++++-
T Consensus       236 lt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        236 LTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            2 2 1   1 356678899988888864

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.42  E-value=0.029  Score=42.72  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=55.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc-chH---HHHHHhHcCCCccEEEeCCChh--h---H-HHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-PDL---DAALKRWFPQGIDIYFENVGGK--M---L-DAV   85 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~-~~~---~~~~~~~~~~~~d~~~d~~g~~--~---~-~~~   85 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++..... ...   ...+.+.. ...|+++-|+...  +   + ...
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~lP~t~~T~~~i~~~~  226 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELL-RESDFVSLHVPLTKETYHMINEER  226 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHH-hhCCEEEEeCCCChHHhhccCHHH
Confidence            578999999 999999999999999999998887643210 000   00111111 1368888877532  1   1 345


Q ss_pred             HHhhccCCEEEEEecc
Q 041355           86 LLNMRLRGRIAVSSII  101 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~~  101 (180)
                      +..++++..+++++..
T Consensus       227 ~~~mk~ga~lIN~aRg  242 (333)
T PRK13243        227 LKLMKPTAILVNTARG  242 (333)
T ss_pred             HhcCCCCeEEEECcCc
Confidence            6777888888887654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.41  E-value=0.016  Score=41.20  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHHH----HH-------Hh-HcC-CC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLDA----AL-------KR-WFP-QG   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~~----~~-------~~-~~~-~~   69 (180)
                      +.....+++|++||-.| + +.|..+..+++..+  .+|+++..+++.   ..+.+..    ++       .. ... +.
T Consensus        68 ~~~~l~~~~g~~VLdIG-~-GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~  145 (212)
T PRK13942         68 MCELLDLKEGMKVLEIG-T-GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP  145 (212)
T ss_pred             HHHHcCCCCcCEEEEEC-C-cccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence            33556789999999998 3 45778888888765  489998887653   0000000    00       00 011 36


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      ||.|+-+.... ......+.|+++|+++..-
T Consensus       146 fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        146 YDRIYVTAAGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cCEEEECCCcccchHHHHHhhCCCcEEEEEE
Confidence            89986544433 5566778999999988763

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.40  E-value=0.081  Score=39.51  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=62.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------------Ccch---HHHHHHhHcCC-Cc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------------EEPD---LDAALKRWFPQ-GI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------------~~~~---~~~~~~~~~~~-~~   70 (180)
                      ++..|+|+|..++.|.....-+...|.+|++.|-.++.                     ++++   ..+.+++..+. +.
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gL  107 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGL  107 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccccc
Confidence            45669999999999998888888889999999866543                     2222   23456666665 78


Q ss_pred             cEEEeCCChh---------------------------hHHHHHHhhc-cCCEEEEEeccccc
Q 041355           71 DIYFENVGGK---------------------------MLDAVLLNMR-LRGRIAVSSIISQY  104 (180)
Q Consensus        71 d~~~d~~g~~---------------------------~~~~~~~~l~-~~G~~v~~~~~~~~  104 (180)
                      -.+++++|-.                           .....+..++ ..||++++++..+.
T Consensus       108 wglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR  169 (322)
T KOG1610|consen  108 WGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR  169 (322)
T ss_pred             eeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC
Confidence            8888888710                           0122334554 56999999988764

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.40  E-value=0.041  Score=41.32  Aligned_cols=84  Identities=13%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcc-hHHHHHHhHcCCCccEEEeCCChh--h---H-HHHHHh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP-DLDAALKRWFPQGIDIYFENVGGK--M---L-DAVLLN   88 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~d~~g~~--~---~-~~~~~~   88 (180)
                      .|.+|.|.| .|.+|....++++.+|.+|++..++...... .....+.+.. ...|+++-++...  +   + ...+..
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell-~~aDiv~~~lp~t~~T~~li~~~~l~~  198 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIM-KKSDFVLISLPLTDETRGMINSKMLSL  198 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHH-hhCCEEEECCCCCchhhcCcCHHHHhc
Confidence            578999999 9999999999999999999999876432100 0001111111 1368888877632  1   1 345677


Q ss_pred             hccCCEEEEEecc
Q 041355           89 MRLRGRIAVSSII  101 (180)
Q Consensus        89 l~~~G~~v~~~~~  101 (180)
                      ++++..+++++..
T Consensus       199 mk~ga~lIN~sRG  211 (303)
T PRK06436        199 FRKGLAIINVARA  211 (303)
T ss_pred             CCCCeEEEECCCc
Confidence            8888888877653

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.37  E-value=0.062  Score=40.18  Aligned_cols=82  Identities=21%  Similarity=0.219  Sum_probs=60.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      .+++ |.|.| .|-+|.-+..+|-.+|++|...+.+..+                 +...+.+.+.     +.|+++.++
T Consensus       167 ~~~k-v~iiG-GGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~-----~aDlvIgaV  239 (371)
T COG0686         167 LPAK-VVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVK-----KADLVIGAV  239 (371)
T ss_pred             CCcc-EEEEC-CccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhh-----hccEEEEEE
Confidence            4444 67778 7999999999999999999999998665                 1122223332     468888765


Q ss_pred             ---Chh----hHHHHHHhhccCCEEEEEecccc
Q 041355           78 ---GGK----MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        78 ---g~~----~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                         |..    ..+..++.++|++.++.+....+
T Consensus       240 LIpgakaPkLvt~e~vk~MkpGsVivDVAiDqG  272 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQG  272 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCCcEEEEEEEcCC
Confidence               322    56788899999999999987654

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.026  Score=42.08  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=35.9

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .++-..|+|.|++.++|++....++..|+.|..++++..+
T Consensus        30 ~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~k   69 (331)
T KOG1210|consen   30 PKPRRHILITGGSSGLGLALALECKREGADVTITARSGKK   69 (331)
T ss_pred             cCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHH
Confidence            3445789999999999999999999999999999999776

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.34  E-value=0.034  Score=40.17  Aligned_cols=93  Identities=23%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC------Ccch-------H-HHHHHhH-cC-CCc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK------EEPD-------L-DAALKRW-FP-QGI   70 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~------~~~~-------~-~~~~~~~-~~-~~~   70 (180)
                      +.....+.+|++||=.+  +++|-.++.+++..|- +|++++.+++-      +..+       + ....... .+ +.|
T Consensus        43 ~i~~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF  120 (238)
T COG2226          43 LISLLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF  120 (238)
T ss_pred             HHHhhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence            33445566899998654  5679999999999875 89999998764      1111       0 0111111 22 379


Q ss_pred             cEEEeCCChh-------hHHHHHHhhccCCEEEEEeccc
Q 041355           71 DIYFENVGGK-------MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        71 d~~~d~~g~~-------~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      |++.-+.|-.       .+..+.++|+|+|+++.+....
T Consensus       121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            9987777632       6788889999999999997754

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.33  E-value=0.012  Score=42.08  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++|+||+|++|...++.+...|++|+++++++
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~   32 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSG   32 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999998888999998888764

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.29  E-value=0.054  Score=38.74  Aligned_cols=81  Identities=11%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH---------HhHcC---CCccEEEeCCChhhHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL---------KRWFP---QGIDIYFENVGGKMLD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~---------~~~~~---~~~d~~~d~~g~~~~~   83 (180)
                      ++.+|||.| +|.++.-=++.+...|++|.+++..-..   ++....         +.+..   .++++||-|++.+.++
T Consensus        24 ~~~~VLVVG-GG~VA~RK~~~Ll~~gA~VtVVap~i~~---el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN   99 (223)
T PRK05562         24 NKIKVLIIG-GGKAAFIKGKTFLKKGCYVYILSKKFSK---EFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLN   99 (223)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCCCH---HHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHH
Confidence            477899999 8999988788888899998887765321   111110         01111   2689999999988777


Q ss_pred             HHHHhh-ccCCEEEEEec
Q 041355           84 AVLLNM-RLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l-~~~G~~v~~~~  100 (180)
                      ..+... +..+.+++...
T Consensus       100 ~~I~~~a~~~~~lvn~vd  117 (223)
T PRK05562        100 NKIRKHCDRLYKLYIDCS  117 (223)
T ss_pred             HHHHHHHHHcCCeEEEcC
Confidence            666554 45576666543

>PRK04148 hypothetical protein; Provisional

Probab=96.29  E-value=0.012  Score=38.57  Aligned_cols=40  Identities=15%  Similarity=0.005  Sum_probs=29.9

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ..-.++.++++.| +| .|....+.+...|.+|++++.++..
T Consensus        12 ~~~~~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         12 YEKGKNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKA   51 (134)
T ss_pred             cccccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence            3334568899999 77 7875555555789999999998663

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.27  E-value=0.073  Score=39.51  Aligned_cols=83  Identities=20%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|.+++|.|.+..+|.=+..++...|+.|..+.+.    ..++.+.+++     .|+++-++|.+.+- --..
T Consensus       147 ~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~----T~~l~~~~~~-----ADIvIsAvGkp~~i-~~~~  216 (287)
T PRK14173        147 KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK----TQDLPAVTRR-----ADVLVVAVGRPHLI-TPEM  216 (287)
T ss_pred             HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEecCCcCcc-CHHH
Confidence            444454 79999999999999999999999899988765542    3345545554     79999999987443 2367


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       217 vk~GavVIDVGin~  230 (287)
T PRK14173        217 VRPGAVVVDVGINR  230 (287)
T ss_pred             cCCCCEEEEccCcc
Confidence            89999999998754

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.25  E-value=0.2  Score=33.93  Aligned_cols=79  Identities=19%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|++++|.|.+..+|.-+..++...|+.|..+.+.    .+++.+.++     ..|+++-++|.+.+-. -..++++..
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~----T~~l~~~~~-----~ADIVVsa~G~~~~i~-~~~ik~gav  103 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK----TKNLQEITR-----RADIVVSAVGKPNLIK-ADWIKPGAV  103 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT----SSSHHHHHT-----TSSEEEE-SSSTT-B--GGGS-TTEE
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC----CCcccceee-----eccEEeeeeccccccc-cccccCCcE
Confidence            479999999999999999999999999999875553    334444444     3799999999774421 146788888


Q ss_pred             EEEEecccc
Q 041355           95 IAVSSIISQ  103 (180)
Q Consensus        95 ~v~~~~~~~  103 (180)
                      ++.+|....
T Consensus       104 VIDvG~~~~  112 (160)
T PF02882_consen  104 VIDVGINYV  112 (160)
T ss_dssp             EEE--CEEE
T ss_pred             EEecCCccc
Confidence            888877543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.24  E-value=0.018  Score=42.14  Aligned_cols=34  Identities=9%  Similarity=0.125  Sum_probs=28.2

Q ss_pred             CCCEEEEecC--CchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAA--SGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga--~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+++++|+||  ++++|.++++.+...|++|+.+.+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~   40 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV   40 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence            4788999996  579999988888788999987654

>PRK05599 hypothetical protein; Provisional

Probab=96.24  E-value=0.015  Score=42.07  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=26.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++|+||++++|...++.+. .|++|+.++++.+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~   34 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPE   34 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            58999999999998777655 4899999887654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.23  E-value=0.034  Score=43.04  Aligned_cols=80  Identities=21%  Similarity=0.171  Sum_probs=52.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+|+|.| +|.||+.+++.+-..+ .+|++.+++.++                 +..+ .+.+.+... ++|++++|...
T Consensus         2 ~~ilviG-aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~-~~d~VIn~~p~   78 (389)
T COG1748           2 MKILVIG-AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIK-DFDLVINAAPP   78 (389)
T ss_pred             CcEEEEC-CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHh-cCCEEEEeCCc
Confidence            4689999 6999999999987777 699999999665                 0001 111222211 35999999987


Q ss_pred             hhHHHHH-HhhccCCEEEEEec
Q 041355           80 KMLDAVL-LNMRLRGRIAVSSI  100 (180)
Q Consensus        80 ~~~~~~~-~~l~~~G~~v~~~~  100 (180)
                      ..-..++ .|++.+=.++.+..
T Consensus        79 ~~~~~i~ka~i~~gv~yvDts~  100 (389)
T COG1748          79 FVDLTILKACIKTGVDYVDTSY  100 (389)
T ss_pred             hhhHHHHHHHHHhCCCEEEccc
Confidence            6333455 45555556666644

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.22  E-value=0.016  Score=42.50  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=46.1

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcch------HHHHHHhHcCCCccEEEeCCChh
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPD------LDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      |+|+||+|-+|...++.++..|-+|+++.|++.+.+..      ..+.+.+....++|++++-+|.+
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~   67 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP   67 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence            68999999999999999999999999999998772211      22333333333799999988863

>PRK07069 short chain dehydrogenase; Validated

Probab=96.20  E-value=0.018  Score=41.47  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++|+||+|++|...++.+...|++|+.++++
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~   32 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN   32 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7999999999999888888889999999887

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.19  E-value=0.012  Score=43.35  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcc----hH---H-HHHHhHcCCCccEEEeCCCh
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP----DL---D-AALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~----~~---~-~~~~~~~~~~~d~~~d~~g~   79 (180)
                      |||+||+|-+|...++.+...|.+|++++++......    .+   . ....+. -.++|+++.|++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEA-LEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhh-cCCCCEEEECCCC
Confidence            6899999999999999888889999999987765110    00   0 011111 1269999999873

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02240 UDP-glucose 4-epimerase

Probab=96.17  E-value=0.028  Score=42.82  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=29.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+|+|+||+|.+|...++.+...|.+|+++++.
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999998888889999988653

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.17  E-value=0.023  Score=42.81  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|.+++|+||.+++|...+.-+...|++|+.++|+.++
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~   71 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEER   71 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            56789999999999999999999999999999999754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.16  E-value=0.067  Score=40.70  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcc--hHHHHHHhHcCCCccEEEeCCChh--h----HHHHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP--DLDAALKRWFPQGIDIYFENVGGK--M----LDAVLL   87 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~d~~g~~--~----~~~~~~   87 (180)
                      .|.+|.|.| .|.+|....+.++..|.+|++.+++......  .....+.+.. ...|+++-++...  +    ....+.
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell-~~aDiVil~lP~t~~t~~li~~~~l~  222 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAI-KDADIISLHVPANKESYHLFDKAMFD  222 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHH-hcCCEEEEeCCCcHHHHHHHhHHHHh
Confidence            567899999 9999999999999999999999877543110  0000111111 1578988887632  1    234456


Q ss_pred             hhccCCEEEEEec
Q 041355           88 NMRLRGRIAVSSI  100 (180)
Q Consensus        88 ~l~~~G~~v~~~~  100 (180)
                      .++++..+++++-
T Consensus       223 ~mk~gavlIN~aR  235 (330)
T PRK12480        223 HVKKGAILVNAAR  235 (330)
T ss_pred             cCCCCcEEEEcCC
Confidence            7788888888864

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.15  E-value=0.12  Score=38.30  Aligned_cols=83  Identities=17%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +..++. .|.+++|.|.+..+|.-...++...|++|....+.    ..++.+.+++     .|+++.++|...+-. -..
T Consensus       144 ~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~----t~~L~~~~~~-----ADIvI~Avgk~~lv~-~~~  213 (279)
T PRK14178        144 HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK----TENLKAELRQ-----ADILVSAAGKAGFIT-PDM  213 (279)
T ss_pred             HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC----hhHHHHHHhh-----CCEEEECCCcccccC-HHH
Confidence            334443 78999999988899999999999999998877663    3344444543     799999999652211 134


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       214 vk~GavVIDVgi~~  227 (279)
T PRK14178        214 VKPGATVIDVGINQ  227 (279)
T ss_pred             cCCCcEEEEeeccc
Confidence            79999999998753

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.14  E-value=0.042  Score=42.88  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=44.9

Q ss_pred             CCCEEEEecC----------------CchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcC
Q 041355           16 KGEYVYVSAA----------------SGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFP   67 (180)
Q Consensus        16 ~g~~vlI~Ga----------------~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~   67 (180)
                      .|.+++|+||                +|.+|.+.++.+...|++|+.++++...            +..+..+.+.+.. 
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~-  265 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVLAAL-  265 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcEEEccCCHHHHHHHHHHhc-
Confidence            6889999998                6669999999999999999988776431            2223333343332 


Q ss_pred             CCccEEEeCCC
Q 041355           68 QGIDIYFENVG   78 (180)
Q Consensus        68 ~~~d~~~d~~g   78 (180)
                      +.+|+++.+.+
T Consensus       266 ~~~DilI~~Aa  276 (399)
T PRK05579        266 PQADIFIMAAA  276 (399)
T ss_pred             CCCCEEEEccc
Confidence            36888888876

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.14  E-value=0.099  Score=34.01  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=26.1

Q ss_pred             EEEecCCchHHHHHHHHHHHcC--CEEEEEeCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAG--CYVVGSAGS   50 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~   50 (180)
                      |.|.|++|++|.-++++.+.+.  ++|++..-.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            5799999999999999999887  588775543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=96.12  E-value=0.042  Score=40.95  Aligned_cols=84  Identities=17%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---------CcchHH-------HHHHhHcC--CCccEEE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---------EEPDLD-------AALKRWFP--QGIDIYF   74 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---------~~~~~~-------~~~~~~~~--~~~d~~~   74 (180)
                      .+.++|+-.| +|+.++.++-+++.+  +.+++.++.+++.         ...++.       ..+.+...  ++||+||
T Consensus       122 ~~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            3778999999 999999888888654  4479999988765         111111       11122222  4899997


Q ss_pred             eCC------Chh--hHHHHHHhhccCCEEEEEe
Q 041355           75 ENV------GGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        75 d~~------g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      -.+      ...  .+.++.+.|+|+|.++.=.
T Consensus       201 ~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            764      122  6788889999999997653

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.12  E-value=0.053  Score=40.03  Aligned_cols=83  Identities=18%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|++++|.|.+.-+|.=+..++...|++|..+.+.    ..++.+..++     .|+++-++|...+-. -..
T Consensus       150 ~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~----T~~l~~~~~~-----ADIvIsAvGkp~~i~-~~~  219 (278)
T PRK14172        150 KSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK----TKNLKEVCKK-----ADILVVAIGRPKFID-EEY  219 (278)
T ss_pred             HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEcCCCcCccC-HHH
Confidence            333443 79999999999999999999999999988765542    3345444544     799999999874421 356


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       220 ik~gavVIDvGin~  233 (278)
T PRK14172        220 VKEGAIVIDVGTSS  233 (278)
T ss_pred             cCCCcEEEEeeccc
Confidence            89999999998644

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.11  E-value=0.049  Score=40.30  Aligned_cols=77  Identities=23%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|.+++|.|.+.-+|.=+..++...|++|..+.+.    ..++.+..++     .|+++-++|.+.+-. -..++++..+
T Consensus       157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~----T~dl~~~~k~-----ADIvIsAvGkp~~i~-~~~vk~gavV  226 (282)
T PRK14180        157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF----TTDLKSHTTK-----ADILIVAVGKPNFIT-ADMVKEGAVV  226 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC----CCCHHHHhhh-----cCEEEEccCCcCcCC-HHHcCCCcEE
Confidence            69999999999999999999999999988765442    3345444444     799999999874422 2678999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       227 IDvGin~  233 (282)
T PRK14180        227 IDVGINH  233 (282)
T ss_pred             EEecccc
Confidence            9998743

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.10  E-value=0.021  Score=43.58  Aligned_cols=48  Identities=8%  Similarity=-0.036  Sum_probs=38.1

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +||.-+..... -.+.+|+|+||+|-+|..++..+...|.+|+++++..
T Consensus         2 ~~~~~~~~~~~-~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLV-LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             chhhhhhhccc-ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            56776643333 3457899999999999999999988899999998743

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.09  E-value=0.036  Score=42.76  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+.+|+|+||+|-+|..++..+...|.+|+++++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            3568899999999999999999999999999988753

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.08  E-value=0.023  Score=42.21  Aligned_cols=61  Identities=26%  Similarity=0.310  Sum_probs=37.2

Q ss_pred             EEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC------------Ccc-----------h--HHHHHHhHcCC-CccE
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK------------EEP-----------D--LDAALKRWFPQ-GIDI   72 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~------------~~~-----------~--~~~~~~~~~~~-~~d~   72 (180)
                      |||+||+|++|...++-+..++. +++.+++++..            ..+           |  -.+.+...... ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            79999999999987777776776 78888888665            000           1  12344555555 8999


Q ss_pred             EEeCCChh
Q 041355           73 YFENVGGK   80 (180)
Q Consensus        73 ~~d~~g~~   80 (180)
                      +|.++.-.
T Consensus        81 VfHaAA~K   88 (293)
T PF02719_consen   81 VFHAAALK   88 (293)
T ss_dssp             EEE-----
T ss_pred             EEEChhcC
Confidence            99988753

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.08  E-value=0.097  Score=37.72  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC------------------------------Cc-------chH
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK------------------------------EE-------PDL   58 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~------------------------------~~-------~~~   58 (180)
                      ...|+|.| .|+||..++..+-..|+ ++..++-.+-.                              ++       .++
T Consensus        30 ~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          30 QAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            35789999 99999999988888887 55554443221                              00       011


Q ss_pred             --HHHHHhHcCCCccEEEeCCChhh-HHHHHH-hhccCCEEEEEeccc
Q 041355           59 --DAALKRWFPQGIDIYFENVGGKM-LDAVLL-NMRLRGRIAVSSIIS  102 (180)
Q Consensus        59 --~~~~~~~~~~~~d~~~d~~g~~~-~~~~~~-~l~~~G~~v~~~~~~  102 (180)
                        .+++.+....++|+++||..+-. =..++. |.+.+=.++..+..+
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence              23444555558999999998652 223444 444444566655444

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.07  E-value=0.037  Score=38.82  Aligned_cols=90  Identities=13%  Similarity=0.054  Sum_probs=55.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc---chH---HHHHHhH-cCCCccE
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE---PDL---DAALKRW-FPQGIDI   72 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~---~~~---~~~~~~~-~~~~~d~   72 (180)
                      +.+.....++.+||-.| +| .|..+..+++. |.+|++++.+++.        ..   ..+   ...+.+. ..+.||+
T Consensus        22 l~~~l~~~~~~~vLDiG-cG-~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   98 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLG-CG-NGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDF   98 (197)
T ss_pred             HHHhcccCCCCcEEEEC-CC-CCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCE
Confidence            44555566778899998 44 47778888875 7899999998653        00   000   0111111 1236999


Q ss_pred             EEeCCCh---------hhHHHHHHhhccCCEEEEEec
Q 041355           73 YFENVGG---------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~~g~---------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+.+..-         ..+..+.+.|+|+|.++.+..
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~  135 (197)
T PRK11207         99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  135 (197)
T ss_pred             EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            9865331         145566788999999755443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.05  E-value=0.053  Score=40.47  Aligned_cols=77  Identities=21%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhh-HHHHHHhhccCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKM-LDAVLLNMRLRG   93 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~-~~~~~~~l~~~G   93 (180)
                      -.|.+|+|+|.++.+|.-++.++...|+.|.+..+.    ..++.+..+     ..|+++-|+|... +...  .++++.
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r----T~~l~e~~~-----~ADIVIsavg~~~~v~~~--~lk~Ga  224 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR----TRDLPAVCR-----RADILVAAVGRPEMVKGD--WIKPGA  224 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC----CCCHHHHHh-----cCCEEEEecCChhhcchh--eecCCC
Confidence            379999999999999999999998899998877432    112322232     3799999999773 3332  388999


Q ss_pred             EEEEEeccc
Q 041355           94 RIAVSSIIS  102 (180)
Q Consensus        94 ~~v~~~~~~  102 (180)
                      .++.+|...
T Consensus       225 vVIDvGin~  233 (296)
T PRK14188        225 TVIDVGINR  233 (296)
T ss_pred             EEEEcCCcc
Confidence            999988754

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.05  E-value=0.14  Score=38.04  Aligned_cols=83  Identities=20%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             HHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++ -.|.+++|.|.+.-+|.-+..++...|+.|..+.+    +..++.+.+++     .|+++-++|.+.+-. -..
T Consensus       150 ~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs----~t~~l~~~~~~-----ADIvI~AvG~p~~i~-~~~  219 (284)
T PRK14190        150 KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS----KTKNLAELTKQ-----ADILIVAVGKPKLIT-ADM  219 (284)
T ss_pred             HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC----CchhHHHHHHh-----CCEEEEecCCCCcCC-HHH
Confidence            33344 37999999999999999999999999998886544    23344444444     799999999774311 256


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       220 ik~gavVIDvGi~~  233 (284)
T PRK14190        220 VKEGAVVIDVGVNR  233 (284)
T ss_pred             cCCCCEEEEeeccc
Confidence            79999999998754

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.04  E-value=0.061  Score=40.19  Aligned_cols=82  Identities=21%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChh-hHHHHHH
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGK-MLDAVLL   87 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~   87 (180)
                      +.-++. .|++|.|.|.++.+|.-...++...|++|.+..+..    .+..+..+     ..|+++-++|.. .+...  
T Consensus       151 ~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t----~~l~e~~~-----~ADIVIsavg~~~~v~~~--  219 (301)
T PRK14194        151 EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS----TDAKALCR-----QADIVVAAVGRPRLIDAD--  219 (301)
T ss_pred             HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC----CCHHHHHh-----cCCEEEEecCChhcccHh--
Confidence            333443 699999999778999999999999999998876542    23333333     379999999976 33332  


Q ss_pred             hhccCCEEEEEeccc
Q 041355           88 NMRLRGRIAVSSIIS  102 (180)
Q Consensus        88 ~l~~~G~~v~~~~~~  102 (180)
                      .++++..++.++...
T Consensus       220 ~ik~GaiVIDvgin~  234 (301)
T PRK14194        220 WLKPGAVVIDVGINR  234 (301)
T ss_pred             hccCCcEEEEecccc
Confidence            388999999988643

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=96.04  E-value=0.032  Score=41.66  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             EEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      |||+||+|.+|..+++.+...|. .|+++.+....               .+++..+.+.+..-.++|+++.+++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECcc
Confidence            68999999999999999999998 68777654321               1111222222211147999999886

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.04  E-value=0.062  Score=39.78  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|++++|.|.+.-+|.=+..++...|+.|..+.+.    ..++.+..++     .|+++-++|.+.+-. -..++++..+
T Consensus       155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~----T~~l~~~~~~-----ADIvI~AvG~p~~i~-~~~vk~GavV  224 (282)
T PRK14169        155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK----TRNLKQLTKE-----ADILVVAVGVPHFIG-ADAVKPGAVV  224 (282)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC----CCCHHHHHhh-----CCEEEEccCCcCccC-HHHcCCCcEE
Confidence            79999999999999999999999999988765442    3345555554     699999999874422 3578999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       225 IDvGin~  231 (282)
T PRK14169        225 IDVGISR  231 (282)
T ss_pred             EEeeccc
Confidence            9998754

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=96.04  E-value=0.065  Score=38.56  Aligned_cols=80  Identities=26%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             cCC--chHHHHHHHHHHHcCCEEEEEeCCCCC----------------------Ccch---HHHHHHhHcCCCccEEEeC
Q 041355           24 AAS--GAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPD---LDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus        24 Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~---~~~~~~~~~~~~~d~~~d~   76 (180)
                      |++  +++|.+.++-+...|++|+.+.++.++                      ++++   +.+.+.+..++++|+++.+
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~   80 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN   80 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence            445  889999888888899999999888764                      1222   2233444444689988876


Q ss_pred             CChh------------------------------hHHHHHHhhccCCEEEEEecccc
Q 041355           77 VGGK------------------------------MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        77 ~g~~------------------------------~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      .+..                              ....+++.++++|.++.+.+...
T Consensus        81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~  137 (241)
T PF13561_consen   81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAA  137 (241)
T ss_dssp             EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGG
T ss_pred             ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhh
Confidence            5421                              01344567788899988876643

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.02  E-value=0.042  Score=38.75  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=56.6

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHH------------HHHHhH-c-CCC
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLD------------AALKRW-F-PQG   69 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~------------~~~~~~-~-~~~   69 (180)
                      .+...++++++||-.| + +.|..+..+++..+  .+|++++.+++.   ..+.+.            ....+. . .+.
T Consensus        65 ~~~l~~~~~~~VLDiG-~-GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         65 CELIEPRPGMKILEVG-T-GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             HHhcCCCCCCEEEEEC-c-CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence            3556678999999888 4 35888888888764  589999988653   000000            000010 1 126


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      ||.++-+.... ....+.+.|+++|+++...
T Consensus       143 fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        143 FDAIIVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            89887665544 4456678999999997653

>PLN02583 cinnamoyl-CoA reductase

Probab=96.00  E-value=0.02  Score=42.75  Aligned_cols=36  Identities=25%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .++.+|+|+||+|.+|..+++.+...|++|+++.++
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~   39 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK   39 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            356789999999999999999998899999998874

>PRK14967 putative methyltransferase; Provisional

Probab=95.96  E-value=0.062  Score=38.42  Aligned_cols=41  Identities=22%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      ....++++++||-.| +|+ |..++.+++. ++ +|++++.++..
T Consensus        30 ~~~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~   71 (223)
T PRK14967         30 AAEGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRA   71 (223)
T ss_pred             HhcccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHH
Confidence            334578899999998 665 8888888875 55 89999887654

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=95.95  E-value=0.04  Score=41.18  Aligned_cols=32  Identities=13%  Similarity=0.129  Sum_probs=26.6

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      |||+||+|-+|..+++.+...|.+++++.++.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            78999999999999998888898766665543

>PLN02476 O-methyltransferase

Probab=95.95  E-value=0.091  Score=38.91  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=59.1

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC-------------------CcchHHHHHHhHc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK-------------------EEPDLDAALKRWF   66 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~-------------------~~~~~~~~~~~~~   66 (180)
                      +....+....++||-.|  +++|..++.+++.++  .+|+++..+++.                   ...+..+.+.+..
T Consensus       110 L~~L~~~~~ak~VLEIG--T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        110 LAMLVQILGAERCIEVG--VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHhcCCCeEEEec--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            33445566788999988  467888888898774  478888888764                   1122333333321


Q ss_pred             ----CCCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           67 ----PQGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 ----~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                          .+.||++|--....    .++.+++.|+++|.++.=
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence                24799986544432    577888999999998753

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.95  E-value=0.067  Score=39.90  Aligned_cols=83  Identities=17%  Similarity=0.081  Sum_probs=62.4

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|++++|.|.+.-+|.=+..++...|++|..+.+.    ..++.+.+++     .|+++-++|.+.+-. -..
T Consensus       150 ~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~----T~~l~~~~~~-----ADIvIsAvGkp~~i~-~~~  219 (297)
T PRK14186        150 RSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR----TQDLASITRE-----ADILVAAAGRPNLIG-AEM  219 (297)
T ss_pred             HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEccCCcCccC-HHH
Confidence            333443 79999999999999999999999999988766442    3345444544     799999999774321 367


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       220 ik~gavVIDvGin~  233 (297)
T PRK14186        220 VKPGAVVVDVGIHR  233 (297)
T ss_pred             cCCCCEEEEecccc
Confidence            89999999998754

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.95  E-value=0.039  Score=42.68  Aligned_cols=34  Identities=24%  Similarity=0.119  Sum_probs=27.4

Q ss_pred             CCCCEEEEecCCchHHHH--HHHHHHHcCCEEEEEeC
Q 041355           15 KKGEYVYVSAASGAVGQL--VGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~--~iqlak~~g~~vi~~~~   49 (180)
                      .-|+++||+|+++++|++  ..+.+ ..|++++++..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence            345789999999999999  55556 78998887764

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.94  E-value=0.14  Score=37.86  Aligned_cols=83  Identities=24%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|.+++|.|.+.-+|.=...++...|++|. +|++.   .+++.+.+++     .|+++-++|.+.+-. -..
T Consensus       149 ~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~---T~~l~~~~~~-----ADIvV~AvGkp~~i~-~~~  218 (281)
T PRK14183        149 EEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF---TKDLKAHTKK-----ADIVIVGVGKPNLIT-EDM  218 (281)
T ss_pred             HHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC---CcCHHHHHhh-----CCEEEEecCcccccC-HHH
Confidence            333443 799999999999999999999998999887 44542   3445444444     799999999874422 367


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       219 vk~gavvIDvGin~  232 (281)
T PRK14183        219 VKEGAIVIDIGINR  232 (281)
T ss_pred             cCCCcEEEEeeccc
Confidence            89999999998654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.92  E-value=0.037  Score=46.13  Aligned_cols=39  Identities=15%  Similarity=0.154  Sum_probs=32.6

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~   52 (180)
                      .+++.+|||+||+|-+|..+++.+... |.+|+++++...
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~  351 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD  351 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence            456789999999999999999877764 689999987654

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=95.92  E-value=0.12  Score=39.91  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHc--CCEEEEEe-CCCCC----------------CcchHHHHHH---------------
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLA--GCYVVGSA-GSKEK----------------EEPDLDAALK---------------   63 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~-~~~~~----------------~~~~~~~~~~---------------   63 (180)
                      .+|.|.|++|++|...+...+..  .++|++.+ +++..                .++.....++               
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            47899999999999999998765  56888877 33332                1222222222               


Q ss_pred             ---hHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEE
Q 041355           64 ---RWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        64 ---~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~   97 (180)
                         +.... .+|+++.++++. .+...+..++.|-++.+
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence               22222 689999988765 66666777766544433

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.062  Score=38.93  Aligned_cols=89  Identities=17%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC---CcchHH------------HHHHhHcCC-Cc
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK---EEPDLD------------AALKRWFPQ-GI   70 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~---~~~~~~------------~~~~~~~~~-~~   70 (180)
                      ....++.+|++|+-.|  .+.|.+..-+|++.|-  +|+......+.   ..+++.            ..+.+...+ .+
T Consensus        87 ~~~~gi~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v  164 (256)
T COG2519          87 VARLGISPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV  164 (256)
T ss_pred             HHHcCCCCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence            3668899999999877  3468888899998875  78888877664   111111            111111122 68


Q ss_pred             cEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           71 DIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      |.+|=-...+  .++++...|+++|+++.+.
T Consensus       165 Dav~LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         165 DAVFLDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence            8765445544  8899999999999999883

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.91  E-value=0.022  Score=40.58  Aligned_cols=62  Identities=26%  Similarity=0.393  Sum_probs=47.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHcC--CCc
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWFP--QGI   70 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~~--~~~   70 (180)
                      |++++++|++|++|+.....+...|+.+.++..+.+.                        ...++.+..++...  +.+
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~i   84 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGTI   84 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCce
Confidence            8899999999999998888888889988888887775                        33344445555433  468


Q ss_pred             cEEEeCCC
Q 041355           71 DIYFENVG   78 (180)
Q Consensus        71 d~~~d~~g   78 (180)
                      |+.++-.|
T Consensus        85 DIlINgAG   92 (261)
T KOG4169|consen   85 DILINGAG   92 (261)
T ss_pred             EEEEcccc
Confidence            99998776

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.91  E-value=0.057  Score=41.89  Aligned_cols=85  Identities=16%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-C-----c-----chH--HHHHHhHcCCCccEEEeCCChhhH
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-E-----E-----PDL--DAALKRWFPQGIDIYFENVGGKML   82 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-~-----~-----~~~--~~~~~~~~~~~~d~~~d~~g~~~~   82 (180)
                      ..+|.|.||+|-+|..+++++..+ ..++..+.+..+. .     .     .+.  ...+....-.++|++|-|.+.+..
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~s  117 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTT  117 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHHH
Confidence            347999999999999999999877 5688887775433 0     0     011  000111100368999999998866


Q ss_pred             HHHHHhhccCCEEEEEecc
Q 041355           83 DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~~  101 (180)
                      ......+..+-+++.++..
T Consensus       118 ~~i~~~~~~g~~VIDlSs~  136 (381)
T PLN02968        118 QEIIKALPKDLKIVDLSAD  136 (381)
T ss_pred             HHHHHHHhCCCEEEEcCch
Confidence            6666666665567776543

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.90  E-value=0.067  Score=39.62  Aligned_cols=83  Identities=17%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHh
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLN   88 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~   88 (180)
                      +.-++. .|++++|.|.+..+|.=...++...|++|..+.+.    ..++.+.+++     .|+++-++|...+-. -..
T Consensus       149 ~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~----T~~l~~~~~~-----ADIvI~AvG~~~~i~-~~~  218 (284)
T PRK14170        149 KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR----TKDLPQVAKE-----ADILVVATGLAKFVK-KDY  218 (284)
T ss_pred             HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEecCCcCccC-HHH
Confidence            333443 69999999999999999999999899988865442    3445555554     699999999774411 267


Q ss_pred             hccCCEEEEEeccc
Q 041355           89 MRLRGRIAVSSIIS  102 (180)
Q Consensus        89 l~~~G~~v~~~~~~  102 (180)
                      ++++..++.+|...
T Consensus       219 vk~GavVIDvGin~  232 (284)
T PRK14170        219 IKPGAIVIDVGMDR  232 (284)
T ss_pred             cCCCCEEEEccCcc
Confidence            89999999998754

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.87  E-value=0.043  Score=41.54  Aligned_cols=36  Identities=6%  Similarity=0.042  Sum_probs=28.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~   51 (180)
                      .|.+|||+||+|.+|..+++.+...|  .+|++.+++.
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~   40 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE   40 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence            36789999999999999888776665  5888877654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.87  E-value=0.036  Score=44.46  Aligned_cols=37  Identities=19%  Similarity=0.124  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+|++|+|+| .|.+|++++++++..|++|++++..
T Consensus         8 ~~~~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369          8 PLLPGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cccCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            356789999999 9999999999999999999997754

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.87  E-value=0.12  Score=37.48  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~   51 (180)
                      +.+|+|.| +|++|..+++.+...|. +++.++...
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            36799999 99999999999999998 666666553

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.039  Score=39.04  Aligned_cols=62  Identities=18%  Similarity=0.197  Sum_probs=41.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchH--HHHHHhHcCC--CccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDL--DAALKRWFPQ--GIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~--~~~~~~~~~~--~~d~~~d~~g~   79 (180)
                      ..+++|+||+|.+|...+..+... .+|++++++.+.             ...|+  .+.+.+....  ++|.++.+.|.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            357999999999999887766655 889999887532             00011  1223332222  68999998874

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.87  E-value=0.08  Score=36.94  Aligned_cols=86  Identities=13%  Similarity=0.044  Sum_probs=59.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC-----------CCc--chHHHHHHhHcCCCccEEEeCCChhh
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE-----------KEE--PDLDAALKRWFPQGIDIYFENVGGKM   81 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~-----------~~~--~~~~~~~~~~~~~~~d~~~d~~g~~~   81 (180)
                      -.|++++|.|.+.-+|.=+..++...|++|..+..+.-           +..  .+....+.+.+. ..|+++-++|...
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~-~ADIVIsAvG~~~  138 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLS-QSDVVITGVPSPN  138 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhh-hCCEEEEccCCCC
Confidence            47999999999999999999999999999997742110           011  121112222221 3799999999875


Q ss_pred             HHHHHHhhccCCEEEEEecc
Q 041355           82 LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +.---..++++..++.+|..
T Consensus       139 ~~i~~d~ik~GavVIDVGi~  158 (197)
T cd01079         139 YKVPTELLKDGAICINFASI  158 (197)
T ss_pred             CccCHHHcCCCcEEEEcCCC
Confidence            42224678999999999864

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08328 hypothetical protein; Provisional

Probab=95.86  E-value=0.18  Score=36.28  Aligned_cols=34  Identities=21%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~   51 (180)
                      +.+|+|.| +|++|..+++.+-..|. ++..++...
T Consensus        27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46799999 99999999999999998 676665543

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.85  E-value=0.027  Score=39.82  Aligned_cols=85  Identities=15%  Similarity=0.051  Sum_probs=56.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhH---c-
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRW---F-   66 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~---~-   66 (180)
                      .+.....+||-.|  +.+|+.++.+|+.+  +.+|+.+..+++.                   ...+..+.+.+.   . 
T Consensus        41 ~~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~  118 (205)
T PF01596_consen   41 VRLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE  118 (205)
T ss_dssp             HHHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT
T ss_pred             HHhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC
Confidence            3444567899998  56799999999876  4699999888765                   112222333322   2 


Q ss_pred             CCCccEEE-eCCChh---hHHHHHHhhccCCEEEEE
Q 041355           67 PQGIDIYF-ENVGGK---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 ~~~~d~~~-d~~g~~---~~~~~~~~l~~~G~~v~~   98 (180)
                      .+.||+|| |+.=..   .+..++++|+++|.++.=
T Consensus       119 ~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  119 EGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             TTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            24799985 544332   567788999999988764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.83  E-value=0.23  Score=32.44  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=26.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ..+|+|.| +|++|..++..+-..|. ++..++..
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCc
Confidence            35799999 99999998888888898 67777665

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.83  E-value=0.17  Score=37.66  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|++++|.|.+.-+|.=...++...|++|..+.+    +..++.+..++     .|+++-++|...+-. -..++++..+
T Consensus       158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs----~T~~L~~~~~~-----ADIvV~AvGkp~~i~-~~~vk~GavV  227 (288)
T PRK14171        158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHS----KTHNLSSITSK-----ADIVVAAIGSPLKLT-AEYFNPESIV  227 (288)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC----CCCCHHHHHhh-----CCEEEEccCCCCccC-HHHcCCCCEE
Confidence            7899999999999999999999989998875443    23445555554     799999999763221 2678999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       228 IDvGin~  234 (288)
T PRK14171        228 IDVGINR  234 (288)
T ss_pred             EEeeccc
Confidence            9998654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.82  E-value=0.039  Score=39.21  Aligned_cols=91  Identities=16%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC---CcchHH-----------HHHHhH-c-CC
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK---EEPDLD-----------AALKRW-F-PQ   68 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~---~~~~~~-----------~~~~~~-~-~~   68 (180)
                      .+.+...+++|++||-.| + +.|..+..+++..+.  +|++++.+++.   ..+.+.           ....+. . .+
T Consensus        68 ~~~~~l~~~~~~~VLDiG-~-GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        68 MMTELLELKPGMKVLEIG-T-GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHhCCCCcCEEEEEC-C-CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            344566789999999888 3 357777888887653  69988887553   000000           000010 1 12


Q ss_pred             CccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           69 GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        69 ~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      .||.++-+.... ......+.|+++|+++...
T Consensus       146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence            689877544333 5566778999999988653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.80  E-value=0.029  Score=42.24  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+|+|+||+|-+|..+++.+...|.+|+++.++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLT   40 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4789999999999999999888888999998887654

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.80  E-value=0.045  Score=37.37  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDI   72 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~   72 (180)
                      .+|-..+|+|++++.|.+....+...|+.|+..+-+.++                    .++++...+....  -|..|.
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            456677999999999999999888899999888877765                    2333433333322  247999


Q ss_pred             EEeCCCh
Q 041355           73 YFENVGG   79 (180)
Q Consensus        73 ~~d~~g~   79 (180)
                      .++|.|-
T Consensus        87 ~vncagi   93 (260)
T KOG1199|consen   87 LVNCAGI   93 (260)
T ss_pred             eeeccce
Confidence            9999985

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=95.79  E-value=0.084  Score=37.69  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC--------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK--------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      +++|+||++++|...++.+...  +..|+.+.+....              .+.+-...+.+.. +++|+++.+.|.
T Consensus         2 ~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~-~~id~li~~aG~   77 (235)
T PRK09009          2 NILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQF-TQLDWLINCVGM   77 (235)
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhc-CCCCEEEECCcc
Confidence            6899999999999877766554  4566665554321              1111122222222 479999999874

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.79  E-value=0.39  Score=35.22  Aligned_cols=81  Identities=16%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCCCc-------chHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhc
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKEE-------PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMR   90 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~   90 (180)
                      +|.|+|+.|-+|...++.+... +.++++++..+....       ......+.+... ++|+++||+..+.....+..+.
T Consensus         3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~-~~DvVid~t~p~~~~~~~~~al   81 (257)
T PRK00048          3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA-DADVLIDFTTPEATLENLEFAL   81 (257)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc-CCCEEEECCCHHHHHHHHHHHH
Confidence            5889997699999988888754 678887666554310       001112222222 5899999997664444444444


Q ss_pred             cCCEEEEEec
Q 041355           91 LRGRIAVSSI  100 (180)
Q Consensus        91 ~~G~~v~~~~  100 (180)
                      ..|.-+.++.
T Consensus        82 ~~G~~vvigt   91 (257)
T PRK00048         82 EHGKPLVIGT   91 (257)
T ss_pred             HcCCCEEEEC
Confidence            4455455664

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.75  E-value=0.038  Score=41.18  Aligned_cols=31  Identities=13%  Similarity=0.143  Sum_probs=25.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC--CEEEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG--CYVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~   49 (180)
                      +|+|+||+|.+|..+++.+...|  .+|++..+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            48999999999999999776665  68887764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=95.75  E-value=0.024  Score=43.06  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++.+|||+||+|.+|..+++.+...|.+|+++++++
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~   40 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS   40 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence            467899999999999999999999999999887653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.75  E-value=0.12  Score=35.73  Aligned_cols=34  Identities=26%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|.|.| +|.+|...++++-..|.+|...+.+++.
T Consensus         1 ~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIG-AGTMGRGIAALFARAGYEVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred             CEEEEc-CCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            588999 7999999888888889999999998775

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.74  E-value=0.08  Score=39.27  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChh-hHHHHHH
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGK-MLDAVLL   87 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~   87 (180)
                      +.-++. .|.+|+|.|.++-+|.-...++...|++|.+. ++   +.+++.+.+++     .|+++-++|.+ .+..  .
T Consensus       150 ~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~-~s---~t~~l~~~~~~-----ADIVI~avg~~~~v~~--~  218 (284)
T PRK14179        150 REYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLT-HS---RTRNLAEVARK-----ADILVVAIGRGHFVTK--E  218 (284)
T ss_pred             HHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEE-CC---CCCCHHHHHhh-----CCEEEEecCccccCCH--H
Confidence            333443 79999999988999999999999899988876 32   22334444443     79999999977 3333  3


Q ss_pred             hhccCCEEEEEeccc
Q 041355           88 NMRLRGRIAVSSIIS  102 (180)
Q Consensus        88 ~l~~~G~~v~~~~~~  102 (180)
                      .++++..++.+|...
T Consensus       219 ~ik~GavVIDvgin~  233 (284)
T PRK14179        219 FVKEGAVVIDVGMNR  233 (284)
T ss_pred             HccCCcEEEEeccee
Confidence            489999999987654

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.74  E-value=0.043  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|+|+||+|.+|..+++.+...|.+|++++++++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD   36 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence            68999999999999999888889999999987553

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.74  E-value=0.13  Score=37.46  Aligned_cols=87  Identities=10%  Similarity=0.034  Sum_probs=57.4

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc-
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF-   66 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~-   66 (180)
                      ....+...-.+||-.|  +.+|+.++.+|+.+  +.+|+.+...++.                   ...+..+.+.+.. 
T Consensus        72 ~~l~~~~~ak~iLEiG--T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~  149 (247)
T PLN02589         72 NMLLKLINAKNTMEIG--VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE  149 (247)
T ss_pred             HHHHHHhCCCEEEEEe--ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence            3334445567899888  57899999999876  4589988887654                   1112233333322 


Q ss_pred             ----CCCccEEEeCCChh----hHHHHHHhhccCCEEEE
Q 041355           67 ----PQGIDIYFENVGGK----MLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        67 ----~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~   97 (180)
                          .+.||++|--....    .++.++++|+++|.++.
T Consensus       150 ~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        150 DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence                24799986544432    56778899999998764

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.72  E-value=0.029  Score=42.25  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.++||+||+|.+|..+++.+...|++|+++.++..
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~   40 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPK   40 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence            4789999999999999999988888999988776643

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.72  E-value=0.093  Score=34.54  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++|+| +|.++.+.+++++.+|++|++++..++.
T Consensus         1 L~I~G-aG~va~al~~la~~lg~~v~v~d~r~e~   33 (136)
T PF13478_consen    1 LVIFG-AGHVARALARLAALLGFRVTVVDPRPER   33 (136)
T ss_dssp             EEEES--STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred             CEEEe-CcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence            46888 8999999999999999999999998764

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.72  E-value=0.039  Score=39.39  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++|+|++|.+|...++.+...|++|+.+.++.
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~   32 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSS   32 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999988888899999988765

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.72  E-value=0.11  Score=38.23  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=28.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      .+.+|+|.| .|++|..++..+-..|. ++..++..
T Consensus        29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456799999 99999999999988897 77766655

>PLN03139 formate dehydrogenase; Provisional

Probab=95.71  E-value=0.11  Score=40.36  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Ccc--hHHHHHHhHcCCCccEEEeCCCh-h-h---H-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEP--DLDAALKRWFPQGIDIYFENVGG-K-M---L-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~--~~~~~~~~~~~~~~d~~~d~~g~-~-~---~-~   83 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...    ...  .....+.+... ..|+++-++.. + +   + .
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~~  275 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLP-KCDVVVINTPLTEKTRGMFNK  275 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHh-hCCEEEEeCCCCHHHHHHhCH
Confidence            578999999 9999999999999999999988776422    000  00111222221 36888777653 2 1   1 2


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..++++..+++++-.
T Consensus       276 ~~l~~mk~ga~lIN~aRG  293 (386)
T PLN03139        276 ERIAKMKKGVLIVNNARG  293 (386)
T ss_pred             HHHhhCCCCeEEEECCCC
Confidence            456778888888887643

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=95.71  E-value=0.075  Score=41.36  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             CCCCEEEEecCC----------------chHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc
Q 041355           15 KKGEYVYVSAAS----------------GAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF   66 (180)
Q Consensus        15 ~~g~~vlI~Ga~----------------g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~   66 (180)
                      -.|.+++|+||+                |.+|.+..+.+...|++|+.+.++...            ..++..+.+.+..
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  262 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAALNEL  262 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHHHhh
Confidence            468999999984                348999999999999999988765432            1222323233222


Q ss_pred             CCCccEEEeCCCh
Q 041355           67 PQGIDIYFENVGG   79 (180)
Q Consensus        67 ~~~~d~~~d~~g~   79 (180)
                      .+.+|+++.+.+-
T Consensus       263 ~~~~D~~i~~Aav  275 (390)
T TIGR00521       263 AKDFDIFISAAAV  275 (390)
T ss_pred             cccCCEEEEcccc
Confidence            2468888887774

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.70  E-value=0.14  Score=36.14  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=28.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ...+|+|.| .|++|..+++.+...|. ++..++..
T Consensus        20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            346799999 99999999999999998 77777765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.031  Score=39.79  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=27.4

Q ss_pred             EEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           21 YVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        21 lI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +|+||+|++|...++.+...|++|+.++++.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~   31 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSR   31 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999999998888888899999998863

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.68  E-value=0.029  Score=42.09  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|-+|..++..+...|.+|++++++..
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~   39 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPN   39 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence            3578999999999999999988888999998887643

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.68  E-value=0.1  Score=37.57  Aligned_cols=33  Identities=18%  Similarity=0.095  Sum_probs=26.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ..+|+|.| .|++|..++..+-..|. +++.++..
T Consensus        11 ~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35699999 99999999888888898 66666654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00015 protochlorophyllide reductase

Probab=95.68  E-value=0.028  Score=42.14  Aligned_cols=32  Identities=19%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             EEecCCchHHHHHHHHHHHcC-CEEEEEeCCCC
Q 041355           21 YVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKE   52 (180)
Q Consensus        21 lI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~   52 (180)
                      +|+||++++|..+++.+...| ++|+.++++.+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~   33 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFL   33 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            589999999999888887789 89999887643

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.68  E-value=0.43  Score=37.82  Aligned_cols=37  Identities=30%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|.+|+|.| .|-||+.+++.+..+|++|+++..+...
T Consensus       227 ~g~~vaIQG-fGnVG~~aA~~L~e~GakvVavSD~~G~  263 (445)
T PRK14030        227 KGKTVAISG-FGNVAWGAATKATELGAKVVTISGPDGY  263 (445)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCCce
Confidence            688999999 9999999999999999999998777654

>PRK08317 hypothetical protein; Provisional

Probab=95.66  E-value=0.099  Score=37.31  Aligned_cols=89  Identities=18%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC------C----c--chHH-HHHHh--HcCCCcc
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK------E----E--PDLD-AALKR--WFPQGID   71 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~------~----~--~~~~-~~~~~--~~~~~~d   71 (180)
                      .+...+.++++||-.| +|. |..+..+++..+  .++++++.++..      .    .  ..+. ..+..  ...+.||
T Consensus        12 ~~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         12 FELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            3566788999999999 554 888899998773  589999887553      0    0  0000 00111  1123688


Q ss_pred             EEEeCC-----Ch--hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYFENV-----GG--KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d~~-----g~--~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +++-..     ..  ..+..+.++|+++|.++...
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            876532     22  26778889999999998765

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=95.65  E-value=0.049  Score=41.60  Aligned_cols=30  Identities=10%  Similarity=0.176  Sum_probs=25.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEE
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGS   47 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~   47 (180)
                      .+|||+||+|.+|..+++.+...|.+++++
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~   31 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVV   31 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEE
Confidence            369999999999999999999889864443

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.65  E-value=0.3  Score=34.68  Aligned_cols=86  Identities=19%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-----HHHHhHcC----CCccEEEeCCChhhHHHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-----AALKRWFP----QGIDIYFENVGGKMLDAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-----~~~~~~~~----~~~d~~~d~~g~~~~~~~~   86 (180)
                      .|.+|+|.| +|.+|.-=+.++-..|++|+++...-...-..+.     ..+.+...    .+++++|-|++++.++..+
T Consensus        11 ~~k~VlvvG-gG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i   89 (210)
T COG1648          11 EGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERI   89 (210)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHH
Confidence            578899999 8999999899999999999888776522000010     11111111    1488999999988766554


Q ss_pred             -HhhccCCEEEEEeccc
Q 041355           87 -LNMRLRGRIAVSSIIS  102 (180)
Q Consensus        87 -~~l~~~G~~v~~~~~~  102 (180)
                       ..+...+.++++....
T Consensus        90 ~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          90 AKAARERRILVNVVDDP  106 (210)
T ss_pred             HHHHHHhCCceeccCCc
Confidence             5667778888875543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.64  E-value=0.097  Score=39.71  Aligned_cols=80  Identities=16%  Similarity=0.088  Sum_probs=53.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHH-HcCCEEEEEeCCCCCC--------cchHHHHHHhHcCCCccEEEeCCC-hh-h---
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKEKE--------EPDLDAALKRWFPQGIDIYFENVG-GK-M---   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak-~~g~~vi~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---   81 (180)
                      .|.++.|.| .|.+|....+.++ .+|.+|++.++.....        ..++.+-+.     ..|++.-++. ++ +   
T Consensus       144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sDvv~lh~plt~~T~~l  217 (323)
T PRK15409        144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQ-----ESDFVCIILPLTDETHHL  217 (323)
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHH-----hCCEEEEeCCCChHHhhc
Confidence            578999999 9999999999998 8999999877653210        011222222     3678766654 22 1   


Q ss_pred             H-HHHHHhhccCCEEEEEecc
Q 041355           82 L-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      + ...+..++++..+++++-.
T Consensus       218 i~~~~l~~mk~ga~lIN~aRG  238 (323)
T PRK15409        218 FGAEQFAKMKSSAIFINAGRG  238 (323)
T ss_pred             cCHHHHhcCCCCeEEEECCCc
Confidence            1 3456788888888887643

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.63  E-value=0.1  Score=40.94  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC------cchHHHHHHhHcCCCccEEEeCCC-hh-h---H-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE------EPDLDAALKRWFPQGIDIYFENVG-GK-M---L-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---~-~   83 (180)
                      .|.++.|.| .|.+|...++.++.+|.+|++.++.....      ..++.+-+.     ..|++.-++. .+ +   + .
T Consensus       150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~-----~sDiVslh~Plt~~T~~li~~  223 (409)
T PRK11790        150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLA-----QSDVVSLHVPETPSTKNMIGA  223 (409)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHh-----hCCEEEEcCCCChHHhhccCH
Confidence            578999999 99999999999999999999988764321      012222222     2577766554 22 1   1 3


Q ss_pred             HHHHhhccCCEEEEEe
Q 041355           84 AVLLNMRLRGRIAVSS   99 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~   99 (180)
                      ..+..++++..+++++
T Consensus       224 ~~l~~mk~ga~lIN~a  239 (409)
T PRK11790        224 EELALMKPGAILINAS  239 (409)
T ss_pred             HHHhcCCCCeEEEECC
Confidence            3556778887777776

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.63  E-value=0.072  Score=38.73  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      +|.+++|+||+  +++|...++.+...|++|+.+++
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            57899999987  48999988888889999888753

>PRK07574 formate dehydrogenase; Provisional

Probab=95.63  E-value=0.12  Score=40.14  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Ccch--HHHHHHhHcCCCccEEEeCCCh-h-h---H-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPD--LDAALKRWFPQGIDIYFENVGG-K-M---L-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~--~~~~~~~~~~~~~d~~~d~~g~-~-~---~-~   83 (180)
                      .|.+|.|+| .|.+|....+.++.+|.+|++.++....    ....  ....+.+.. ...|+++-++.. + +   + .
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~~  268 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLV-SVCDVVTIHCPLHPETEHLFDA  268 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHh-hcCCEEEEcCCCCHHHHHHhCH
Confidence            567899999 9999999999999999999999886522    0000  001122221 146888877763 2 1   2 2


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..++++..+++++-.
T Consensus       269 ~~l~~mk~ga~lIN~aRG  286 (385)
T PRK07574        269 DVLSRMKRGSYLVNTARG  286 (385)
T ss_pred             HHHhcCCCCcEEEECCCC
Confidence            456678888888877543

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.63  E-value=0.11  Score=38.49  Aligned_cols=77  Identities=18%  Similarity=0.087  Sum_probs=59.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|.+++|.|.+.-+|.=+..++...|+.|..+.+.    ..++.+..++     .|+++-++|.+.+-. -..++++..+
T Consensus       156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~----T~nl~~~~~~-----ADIvIsAvGkp~~i~-~~~vk~GavV  225 (282)
T PRK14166        156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK----TKDLSLYTRQ-----ADLIIVAAGCVNLLR-SDMVKEGVIV  225 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEcCCCcCccC-HHHcCCCCEE
Confidence            79999999999999999999998889988855542    3345444444     799999999874422 2578999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       226 IDvGin~  232 (282)
T PRK14166        226 VDVGINR  232 (282)
T ss_pred             EEecccc
Confidence            9998654

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.62  E-value=0.23  Score=37.13  Aligned_cols=77  Identities=19%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|.+++|.|.+.-+|.=+..++...|++|..+.+.    ..++.+.+++     .|+++-++|...+-. -..++++..+
T Consensus       166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~----T~nl~~~~~~-----ADIvv~AvGk~~~i~-~~~vk~gavV  235 (299)
T PLN02516        166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR----TPDPESIVRE-----ADIVIAAAGQAMMIK-GDWIKPGAAV  235 (299)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEcCCCcCccC-HHHcCCCCEE
Confidence            69999999999999999999999899988866542    3344444444     699999999763211 2678999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       236 IDvGin~  242 (299)
T PLN02516        236 IDVGTNA  242 (299)
T ss_pred             EEeeccc
Confidence            9998754

>PRK06924 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.032  Score=40.26  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++++|+||+|++|...++.+...|++|+.+++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence            4789999999999998888888899999998876

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.59  E-value=0.098  Score=36.59  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=54.8

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Ccc--hHH---HHHHh-HcCCCc
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEP--DLD---AALKR-WFPQGI   70 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~--~~~---~~~~~-~~~~~~   70 (180)
                      ...+.+.....++.+||-.|+  +.|..++.+++ .|.+|++++.++..        ...  ...   ..+.. ...+.+
T Consensus        19 ~~~l~~~~~~~~~~~vLDiGc--G~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        19 HSAVREAVKTVAPCKTLDLGC--GQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             hHHHHHHhccCCCCcEEEeCC--CCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            344555556566678888883  45777777776 47899999987653        000  000   00111 112368


Q ss_pred             cEEEeCC-----Ch----hhHHHHHHhhccCCEEEEEe
Q 041355           71 DIYFENV-----GG----KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~d~~-----g~----~~~~~~~~~l~~~G~~v~~~   99 (180)
                      |+++.+.     ..    ..+..+.+.|+|+|.++.+.
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            9887642     11    14566778899999965553

Part of a tellurite-reducing operon tehA and tehB

>PLN02778 3,5-epimerase/4-reductase

Probab=95.59  E-value=0.096  Score=39.18  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=40.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      ...+|||+||+|-+|..+++.+...|.+|+.....-. +...+...+..   .++|++|.|++
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~-~~~~v~~~l~~---~~~D~ViH~Aa   66 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLE-NRASLEADIDA---VKPTHVFNAAG   66 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccC-CHHHHHHHHHh---cCCCEEEECCc
Confidence            3468999999999999999999989998865322111 21222222222   26899998876

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.58  E-value=0.11  Score=38.68  Aligned_cols=78  Identities=19%  Similarity=0.137  Sum_probs=60.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|.+.-+|.=...++...|++|..+.+.    ..++.+.+++     .|+++-++|.+.+-. -..++++..
T Consensus       158 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~----T~~l~~~~~~-----ADIvVsAvGkp~~i~-~~~ik~gai  227 (294)
T PRK14187        158 LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA----TRDLADYCSK-----ADILVAAVGIPNFVK-YSWIKKGAI  227 (294)
T ss_pred             CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC----CCCHHHHHhh-----CCEEEEccCCcCccC-HHHcCCCCE
Confidence            369999999999999999999999999998865552    3345444544     799999999874421 257889999


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.+|...
T Consensus       228 VIDVGin~  235 (294)
T PRK14187        228 VIDVGINS  235 (294)
T ss_pred             EEEecccc
Confidence            99998754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.56  E-value=0.11  Score=41.13  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH--------HHhHcCCCccEEEeCCChhhHH----HHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA--------LKRWFPQGIDIYFENVGGKMLD----AVL   86 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~d~~g~~~~~----~~~   86 (180)
                      +|.|.||.|.+|..++..++..|.+|++.+++++.. ......        ..+. -...|+++-|+..+...    .+.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~-~~~a~~~gv~~~~~~~e~-~~~aDvVIlavp~~~~~~vl~~l~   79 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKG-KEVAKELGVEYANDNIDA-AKDADIVIISVPINVTEDVIKEVA   79 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHH-HHHHHHcCCeeccCHHHH-hccCCEEEEecCHHHHHHHHHHHH
Confidence            588999889999999999999999998888765430 011110        1111 12578888888755333    333


Q ss_pred             HhhccCCEEEEEec
Q 041355           87 LNMRLRGRIAVSSI  100 (180)
Q Consensus        87 ~~l~~~G~~v~~~~  100 (180)
                      ..++++..++.+++
T Consensus        80 ~~l~~~~iViDvsS   93 (437)
T PRK08655         80 PHVKEGSLLMDVTS   93 (437)
T ss_pred             hhCCCCCEEEEccc
Confidence            44556666676665

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.53  E-value=0.15  Score=39.53  Aligned_cols=79  Identities=13%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-Cc----chHHHHHHhHcCCCccEEEeCCC-hh-----h---
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-EE----PDLDAALKRWFPQGIDIYFENVG-GK-----M---   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~~----~~~~~~~~~~~~~~~d~~~d~~g-~~-----~---   81 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.++.... ..    .++.+-+.     ..|++.-++. .+     +   
T Consensus       115 ~gktvGIIG-~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~-----~sDiI~lh~PLt~~g~~~T~~l  188 (378)
T PRK15438        115 HDRTVGIVG-VGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQ-----EADILTFHTPLFKDGPYKTLHL  188 (378)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHh-----hCCEEEEeCCCCCCcccccccc
Confidence            688999999 9999999999999999999998764322 11    11222222     2466654332 11     1   


Q ss_pred             H-HHHHHhhccCCEEEEEec
Q 041355           82 L-DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~~~  100 (180)
                      + ...+..++++..+++++-
T Consensus       189 i~~~~l~~mk~gailIN~aR  208 (378)
T PRK15438        189 ADEKLIRSLKPGAILINACR  208 (378)
T ss_pred             cCHHHHhcCCCCcEEEECCC
Confidence            1 345567777777777654

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=95.52  E-value=0.061  Score=42.55  Aligned_cols=35  Identities=20%  Similarity=0.063  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +..+|+|+||+|-+|..+++.+...|.+|+++++.
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45689999999999999999998899999998865

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.51  E-value=0.082  Score=39.94  Aligned_cols=76  Identities=26%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC-----EEEEEeCCCCCCcchHH-------HHHHhHcC-CCccEEEeCCChhhHHH
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC-----YVVGSAGSKEKEEPDLD-------AALKRWFP-QGIDIYFENVGGKMLDA   84 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~-----~vi~~~~~~~~~~~~~~-------~~~~~~~~-~~~d~~~d~~g~~~~~~   84 (180)
                      -+|.|.||+|.||+..++++.-...     .+++..++..+.-.++.       +.+.+... .++|++|-|.|++....
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~   81 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE   81 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence            4688999999999999999976432     23444444333101111       11111111 27999999999886666


Q ss_pred             HHHhhccCC
Q 041355           85 VLLNMRLRG   93 (180)
Q Consensus        85 ~~~~l~~~G   93 (180)
                      ....++..|
T Consensus        82 ~~p~~~~~G   90 (334)
T COG0136          82 VEPKAAEAG   90 (334)
T ss_pred             HHHHHHHcC
Confidence            666666555

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.51  E-value=0.24  Score=36.79  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             HHcCCC-CCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHH
Q 041355           10 LVCSPK-KGEYVYVSAASGAVGQLVGQFAKL--AGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVL   86 (180)
Q Consensus        10 ~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~   86 (180)
                      +.-+++ .|.+++|.|.+..+|.=+..++..  .+++|.++.+    +..++.+.+++     .|+++-++|.+.+-. -
T Consensus       150 ~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs----~T~~l~~~~k~-----ADIvV~AvGkp~~i~-~  219 (284)
T PRK14193        150 RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT----GTRDLAAHTRR-----ADIIVAAAGVAHLVT-A  219 (284)
T ss_pred             HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC----CCCCHHHHHHh-----CCEEEEecCCcCccC-H
Confidence            334444 699999999999999998888876  6888765543    23455555555     699999999874311 3


Q ss_pred             HhhccCCEEEEEeccc
Q 041355           87 LNMRLRGRIAVSSIIS  102 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~~  102 (180)
                      ..++++..++.+|...
T Consensus       220 ~~ik~GavVIDvGin~  235 (284)
T PRK14193        220 DMVKPGAAVLDVGVSR  235 (284)
T ss_pred             HHcCCCCEEEEccccc
Confidence            6789999999998754

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.50  E-value=0.1  Score=39.67  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=59.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|++++|.|-+.-||.=+..++...|++|..+.+.    ..++.+..++     .|+++-++|.+.+-. -..++++..+
T Consensus       213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~----T~nl~~~~~~-----ADIvIsAvGkp~~v~-~d~vk~GavV  282 (345)
T PLN02897        213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF----TKDPEQITRK-----ADIVIAAAGIPNLVR-GSWLKPGAVV  282 (345)
T ss_pred             CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC----CCCHHHHHhh-----CCEEEEccCCcCccC-HHHcCCCCEE
Confidence            69999999999999999999999899988755442    3344444444     799999999874421 3678999999


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       283 IDVGin~  289 (345)
T PLN02897        283 IDVGTTP  289 (345)
T ss_pred             EEccccc
Confidence            9998754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.50  E-value=0.081  Score=37.88  Aligned_cols=58  Identities=22%  Similarity=0.224  Sum_probs=42.3

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      |+|+||+|.+|...++.+...+.+|.+.+|+...               .+.+-.+.+.+... ++|.+|-+.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc-CCceEEeecC
Confidence            7899999999999999998888899999998643               11111233333333 6888988887

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=95.49  E-value=0.056  Score=40.46  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=27.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      +|+|+||+|.+|..+++.+...|.+|+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~   31 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDN   31 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeC
Confidence            4899999999999999988888999887754

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08223 hypothetical protein; Validated

Probab=95.49  E-value=0.23  Score=36.96  Aligned_cols=33  Identities=15%  Similarity=0.017  Sum_probs=27.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ..+|+|.| +|++|..+++.+-..|. ++..++..
T Consensus        27 ~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         27 NSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             cCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45799999 99999999999999999 66666555

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=95.48  E-value=0.081  Score=40.03  Aligned_cols=32  Identities=25%  Similarity=0.122  Sum_probs=27.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|+|+||+|.+|...++.+...|.+|+++++.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~   33 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNL   33 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecC
Confidence            58999999999999888887789999887643

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=95.46  E-value=0.089  Score=36.29  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC-C-CcchHHHHHHhHcCCCccEE-EeCCChhhHHHHHHhhcc-CC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE-K-EEPDLDAALKRWFPQGIDIY-FENVGGKMLDAVLLNMRL-RG   93 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~-~-~~~~~~~~~~~~~~~~~d~~-~d~~g~~~~~~~~~~l~~-~G   93 (180)
                      +++|+||.|++|+..++.+...+. +++.+.++.. . ...+..+.++.. +..+.+. .|....+.+..++..+.. .|
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~-g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA-GARVEYVQCDVTDPEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT-T-EEEEEE--TTSHHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC-CCceeeeccCccCHHHHHHHHHHHHhccC
Confidence            579999999999998888877766 8998888832 2 333344444442 1234443 555555577777766543 34


Q ss_pred             EE
Q 041355           94 RI   95 (180)
Q Consensus        94 ~~   95 (180)
                      ++
T Consensus        81 ~i   82 (181)
T PF08659_consen   81 PI   82 (181)
T ss_dssp             -E
T ss_pred             Cc
Confidence            44

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PLN02366 spermidine synthase

Probab=95.43  E-value=0.12  Score=38.86  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc-------chHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE-------PDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~-------~~~~~~~~~~~~~~~d   71 (180)
                      .+.++|||.|+.+  |.++..++++-+. +|.++.-++.-               ++       .|....+++..++.+|
T Consensus        90 ~~pkrVLiIGgG~--G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD--GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc--cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            5678899999433  6677788888665 67776655431               01       1222233332234799


Q ss_pred             EEEeCCCh-----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYFENVGG-----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d~~g~-----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+--...           +.+..+.+.|+|+|.++.-+
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            87542221           13567788999999997643

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.42  E-value=0.028  Score=38.49  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=34.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|..|+++|+.-++|...++-+...|++|++++|.++.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~   43 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEAN   43 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHH
Confidence            57889999999999999999999999999999998765

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.41  E-value=0.47  Score=37.88  Aligned_cols=82  Identities=10%  Similarity=0.010  Sum_probs=53.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH--------H-hHcC---CCccEEEeCCChhhHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL--------K-RWFP---QGIDIYFENVGGKMLD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~--------~-~~~~---~~~d~~~d~~g~~~~~   83 (180)
                      .|.+|||.| .|.++.-=++.+...|++|.++...-.   +++.+..        + ++..   .+++++|-|++++.++
T Consensus        11 ~~~~vlvvG-gG~vA~rk~~~ll~~ga~v~visp~~~---~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (457)
T PRK10637         11 RDRDCLLVG-GGDVAERKARLLLDAGARLTVNALAFI---PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN   86 (457)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence            578899999 788988877777778998887765321   1111100        0 0111   2688999999988666


Q ss_pred             HHH-HhhccCCEEEEEecc
Q 041355           84 AVL-LNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~-~~l~~~G~~v~~~~~  101 (180)
                      .-+ ...+..|.++++...
T Consensus        87 ~~i~~~a~~~~~lvN~~d~  105 (457)
T PRK10637         87 QRVSEAAEARRIFCNVVDA  105 (457)
T ss_pred             HHHHHHHHHcCcEEEECCC
Confidence            555 455677888887553

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.40  E-value=0.3  Score=36.51  Aligned_cols=42  Identities=19%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+.+++|.+|+- +-+|.+|.....+++.+|++++.+.....
T Consensus        55 ~~G~l~pG~tIVE-~TSGNTGI~LA~vaa~~Gy~~iivmP~~~   96 (300)
T COG0031          55 KRGLLKPGGTIVE-ATSGNTGIALAMVAAAKGYRLIIVMPETM   96 (300)
T ss_pred             HcCCCCCCCEEEE-cCCChHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            3455899996644 55888999999999999998777776544

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.39  E-value=0.34  Score=32.82  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCChhh----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVGGKM----   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g~~~----   81 (180)
                      .+++|.|.| .|+.|.+-.+-+|-.|.+|++..++.+.          ...++.+.+++     .|+++-.+..+.    
T Consensus         3 ~~k~IAViG-yGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~-----aDvV~~L~PD~~q~~v   76 (165)
T PF07991_consen    3 KGKTIAVIG-YGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKK-----ADVVMLLLPDEVQPEV   76 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC------SEEEE-S-HHHHHHH
T ss_pred             CCCEEEEEC-CChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhh-----CCEEEEeCChHHHHHH
Confidence            478999999 8999999999999999999998888763          22233344443     689988887653    


Q ss_pred             H-HHHHHhhccCCEEEEE
Q 041355           82 L-DAVLLNMRLRGRIAVS   98 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~   98 (180)
                      + +.+...|+++-.+++.
T Consensus        77 y~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   77 YEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             HHHHHHHHS-TT-EEEES
T ss_pred             HHHHHHhhCCCCCEEEeC
Confidence            2 4444677777666543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.39  E-value=0.04  Score=41.91  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++|||+||+|-+|..+++.+...|.+|++++++.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~   34 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS   34 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence            3799999999999999999988999999988764

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.37  E-value=0.059  Score=39.75  Aligned_cols=85  Identities=13%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHH-----------hHcCCCccEEEeCCChhh-
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALK-----------RWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~d~~g~~~-   81 (180)
                      ...+.+++|.| +|++|.+++..+...|++|+++.++.++ .+++.+.+.           +.....+|++++|++... 
T Consensus       114 ~~~~k~vliiG-aGg~g~aia~~L~~~g~~v~v~~R~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~  191 (270)
T TIGR00507       114 LRPNQRVLIIG-AGGAARAVALPLLKADCNVIIANRTVSK-AEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMS  191 (270)
T ss_pred             CccCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCC
Confidence            34578899999 5899999888887889888888776543 112222211           111126899999987531 


Q ss_pred             --HH---HHHHhhccCCEEEEEec
Q 041355           82 --LD---AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 --~~---~~~~~l~~~G~~v~~~~  100 (180)
                        ..   .....++++..++.+..
T Consensus       192 ~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       192 GNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEecc
Confidence              11   11244666666666643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.37  E-value=0.041  Score=42.09  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=32.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+.+|||+||+|.+|..+++.+...|.+|+++.++.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4677899999999999999998888899999887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		8e-64
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		1e-60
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		1e-27
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		4e-24
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		1e-20
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		1e-20
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		2e-13
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-13
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-13
2w4q_A	357	Crystal Structure Of Human Zinc-Binding Alcohol Deh		6e-12
2zb4_A	357	Crystal Structure Of Human 15-Ketoprostaglandin Del		6e-12
2zb3_A	353	Crystal Structure Of Mouse 15-Ketoprostaglandin Del		2e-11
1vj1_A	363	Crystal Structure Of Putative Nadph-Dependent Oxido		1e-10
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		4e-04

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score =  239 bits (609), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 136/171 (79%), Gaps = 17/171 (9%)
Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPKKGE V+VSAASGAVGQLVGQFAK+ GCYVVGSAGSKEK                 
Sbjct: 148 VCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAFNYK 207
Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR+FP GIDIYFENVGGKMLDAVL+NM+L GRIAV  +ISQYNLE+ EGVH
Sbjct: 208 EEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVH 267
Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLE 164
           NL  LI KRIR+EGFL  DYYHLY K+LE+VIP I+ GK+VYVED+A GLE
Sbjct: 268 NLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAHGLE 318

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 130/172 (75%), Gaps = 17/172 (9%)
Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEK                 
Sbjct: 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYK 209
Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR FP GIDIYFENVGGKMLDAVL+NM + GRIAV  +ISQYNLE  EGVH
Sbjct: 210 EESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVH 269
Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
           NL  +I KR R++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+GLEK
Sbjct: 270 NLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEK 321

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------- 53
           ++ V  PK GE V +S A+GAVG + GQ A+L GC VVG AG  EK              
Sbjct: 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAI 200
Query: 54  --EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQY-NLEKPE 110
             +  DL A LKR  P+GID++F+NVGG++LD VL  +  + RI +   ISQY N E   
Sbjct: 201 DYKNEDLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVR 260
Query: 111 GVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNC 170
           G  N   L+  R R+EG +  DY   + + L+ +   + EGK+   EDI EGLE      
Sbjct: 261 GPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETL 320
Query: 171 YTL 173
             L
Sbjct: 321 LKL 323

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 26/181 (14%)
Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE--------------- 52
           ++ VC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS E               
Sbjct: 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFN 196
Query: 53  -KEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNL--EKP 109
            K    L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+   IS YN   + P
Sbjct: 197 YKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLP 256
Query: 110 EGVHNLEQLIGKRIRLEGFLA----GDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
            G  + E +I K++R+EGF+     GD      K L  ++  + EGK+ Y E + +G E 
Sbjct: 257 PG-PSPESIIYKQLRIEGFIVYRWQGDVRE---KALRDLMKWVLEGKIQYHEHVTKGFEN 312
Query: 166 I 166
           +
Sbjct: 313 M 313

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 24/177 (13%)
Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE----------------KE 54
           +C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS E                K 
Sbjct: 156 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKT 215
Query: 55  EPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYN-LEKPEGVH 113
              L+  LK+  P G D YF+NVGG+  + V+  M+  GRIA+   IS YN         
Sbjct: 216 VESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGP 275
Query: 114 NLEQLIGKRIRLEGFLA----GDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
             E +I + +R+E F+     GD     LK L   +  + EGK+ Y E I EG E +
Sbjct: 276 PPEIVIYQELRMEAFVVYRWQGDARQKALKDL---LKWVLEGKIQYKEYIIEGFENM 329

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 24/177 (13%)
Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE----------------KE 54
           +C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS E                K 
Sbjct: 135 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKT 194
Query: 55  EPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYN-LEKPEGVH 113
              L+  LK+  P G D YF+NVGG+  + V+  M+  GRIA+   IS YN         
Sbjct: 195 VESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGP 254
Query: 114 NLEQLIGKRIRLEGFLA----GDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
             E +I + +R+E F+     GD     LK L   +  + EGK+ Y E I EG E +
Sbjct: 255 PPEIVIYQELRMEAFVVYRWQGDARQKALKDL---LKWVLEGKIQYKEYIIEGFENM 308

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----------------EPDL 58
            +G+ V V+AA+G  GQ   Q +K A C+V+G+  S EK                 EP +
Sbjct: 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP-V 220
Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-- 116
              LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V   IS Y  + P G+  ++  
Sbjct: 221 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY--QTPTGLSPVKAG 278
Query: 117 ----QLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAE--------GLE 164
               +L+ K   ++GF    Y   Y   +  ++     G +V   D+ +        GLE
Sbjct: 279 TLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLE 338
Query: 165 KISR 168
            I R
Sbjct: 339 SIFR 342

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----------------EPDL 58
            +G+ V V+AA+G  GQ   Q +K A C+V+G+  S EK                 EP +
Sbjct: 141 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP-V 199
Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-- 116
              LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V   IS Y  + P G+  ++  
Sbjct: 200 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY--QTPTGLSPVKAG 257
Query: 117 ----QLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAE--------GLE 164
               +L+ K   ++GF    Y   Y   +  ++     G +V   D+ +        GLE
Sbjct: 258 TLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLE 317
Query: 165 KISR 168
            I R
Sbjct: 318 SIFR 321

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----------------EPDL 58
            +G+ V V+AA+G  GQ   Q +K A C+V+G+  S EK                 EP +
Sbjct: 170 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP-V 228
Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-- 116
              LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V   IS Y  + P G+  ++  
Sbjct: 229 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY--QTPTGLSPVKAG 286
Query: 117 ----QLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAE--------GLE 164
               +L+ K   ++GF    Y   Y   +  ++     G +V   D+ +        GLE
Sbjct: 287 TLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLE 346
Query: 165 KISR 168
            I R
Sbjct: 347 SIFR 350

>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And 18beta-Glycyrrhetinic Acid Length = 357

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 22  VSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----EEPDLDAA-----------LKR 64
           VS A+GA G + GQ     GC  VVG  G+ EK      E   DAA           L+ 
Sbjct: 161 VSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRE 220
Query: 65  WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE---KPEGVHNLEQLIGK 121
             P G+D+YF+NVGG + D V+  M     I +   ISQYN +    P     +E +  +
Sbjct: 221 SCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKE 280
Query: 122 R-IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           R I  E FL  +Y   +   +  +    +EGK+   E +  GLE +
Sbjct: 281 RNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENM 326

>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadp And 15-Keto-Pge2 Length = 357

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 22  VSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----EEPDLDAA-----------LKR 64
           VS A+GA G + GQ     GC  VVG  G+ EK      E   DAA           L+ 
Sbjct: 166 VSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRE 225
Query: 65  WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE---KPEGVHNLEQLIGK 121
             P G+D+YF+NVGG + D V+  M     I +   ISQYN +    P     +E +  +
Sbjct: 226 SCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKE 285
Query: 122 R-IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           R I  E FL  +Y   +   +  +    +EGK+   E +  GLE +
Sbjct: 286 RNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENM 331

>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadph Length = 353

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 21/175 (12%)
Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----EEPDLDAA----- 61
           S    + + VS A+GA G L GQ   L GC  VVG  G++EK      E   DAA     
Sbjct: 153 SAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKT 212
Query: 62  ------LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE---KPEGV 112
                 L+   P G+D+YF+NVGG + +AV+  M     I +   ISQY+ +    P   
Sbjct: 213 GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYPPPLP 272
Query: 113 HNLEQLIGKR-IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
             +E +  +R I  E F   +Y   +   +  +    +EGK+   E +A+GLE +
Sbjct: 273 PAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENM 327

>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent Oxidoreductase From Mus Musculus At 2.10 A Resolution Length = 363

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----EEPDLDAA----- 61
           S    +   VS A+GA G L GQ   L GC  VVG  G++EK      E   DAA     
Sbjct: 163 SAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKT 222
Query: 62  ------LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE---KPEGV 112
                 L+   P G+D+YF+NVGG + + V+        I +   ISQYN +    P   
Sbjct: 223 GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNENSHIILCGQISQYNKDVPYPPPLP 282
Query: 113 HNLEQLIGKR-IRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEK 165
             +E +  +R I  E F   +Y   +   +  +    +EGK+   E +A+GLE 
Sbjct: 283 PAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETVAKGLEN 336

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDL 58
           KKG+YV + AA+G VG ++ Q  K+ G + +  A + EK                +E  L
Sbjct: 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDIL 206
Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRG 93
              LK    +G+D  F++VG    +  L  ++ +G
Sbjct: 207 RQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKG 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	7e-85
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	5e-78
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	3e-70
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	4e-49
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	4e-17
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	5e-14
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-13
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	9e-13
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-12
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-12
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-12
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	6e-12
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-11
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-11
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	6e-11
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	8e-11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-10
3gms_A	340	Putative NADPH:quinone reductase; structural genom	3e-10
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-10
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	7e-10
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	2e-09
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	9e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	1e-08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-08
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-08
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	5e-08
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-07
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	9e-07
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	9e-07
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	6e-06
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-05
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	8e-05
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	8e-05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	7e-04

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score =  252 bits (647), Expect = 7e-85
 Identities = 116/173 (67%), Positives = 130/173 (75%), Gaps = 17/173 (9%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
           VCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEK                 
Sbjct: 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYK 209

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
           EE DL AALKR FP GIDIYFENVGGKMLDAVL+NM + GRIAV  +ISQYNLE  EGVH
Sbjct: 210 EESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVH 269

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           NL  +I KR R++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+GLEK 
Sbjct: 270 NLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKA 322

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score =  234 bits (600), Expect = 5e-78
 Identities = 70/174 (40%), Positives = 98/174 (56%), Gaps = 18/174 (10%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------E 54
           VC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK                 
Sbjct: 140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT 199

Query: 55  EPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNL-EKPEGVH 113
              L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+   IS YN  ++     
Sbjct: 200 VNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGP 259

Query: 114 NLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
           + E +I K++R+EGF+   +   +  K L  ++  + EGK+ Y E + +G E +
Sbjct: 260 SPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENM 313

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score =  215 bits (551), Expect = 3e-70
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 11  VCSPKKG--EYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-----EE------- 55
                 G  + + VS A+GA G + GQ     GC  VVG  G+ EK      E       
Sbjct: 153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAI 212

Query: 56  ----PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEG 111
                ++   L+   P G+D+YF+NVGG + D V+  M     I +   ISQYN + P  
Sbjct: 213 NYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYP 272

Query: 112 V----HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI 166
                        + I  E FL  +Y   +   +  +    +EGK+   E +  GLE +
Sbjct: 273 PPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENM 331

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  161 bits (410), Expect = 4e-49
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDL 58
             +G+ V V+AA+G  GQ   Q +K A C+V+G+  S EK                   +
Sbjct: 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPV 220

Query: 59  DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYN----LEKPEGVHN 114
              LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V   IS Y     L   +    
Sbjct: 221 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL 280

Query: 115 LEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISR 168
             +L+ K   ++GF    Y   Y   +  ++     G +V   D+ +   +   
Sbjct: 281 PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRF 334

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           +  +   ++A +  + +L+   AK  G   + +    E+               + PD +
Sbjct: 163 EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFE 222

Query: 60  AALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
           A L+     +   I+ + V G +  A+   M  R R  +   +          +    QL
Sbjct: 223 ATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLD----PDATVIREPGQL 278

Query: 119 IGKRIRLEGFLAGDYYH----LYLKFLELVIPAIREGK 152
           I +   +EGF   ++           +        +G+
Sbjct: 279 IFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGR 316

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 24/159 (15%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
            +GE V +   +  +G    Q A+  G  V  +AGS  K                  D  
Sbjct: 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFA 225

Query: 60  AALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI 119
           A +K    QG+DI  + +G    +  + ++   G ++   II+       E V NL  ++
Sbjct: 226 AVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLS---IIAFLGGAVAEKV-NLSPIM 281

Query: 120 GKRIRLEGFL-----AGDYYHLYLKFLELVIPAIREGKM 153
            KR+ + G       A +   +    L  V P +  G +
Sbjct: 282 VKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV 320

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 33/173 (19%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           + G+ V V AA   V     Q AKL G  V+ +AGS++K                 PD  
Sbjct: 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWP 224

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             ++R    +G D   ++ G    + V+      GRIA++   S Y             +
Sbjct: 225 KEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTL-----PFAHV 279

Query: 119 IGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM------VY-VEDIAEGLE 164
             +++ + G             L  ++  + EGK+      V  +E  AEG  
Sbjct: 280 FYRQLSILGSTMAS-----KSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHR 327

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 50/195 (25%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------------------- 55
           K+G+ V +  ASG +G    QFA   G   +    S +K E                   
Sbjct: 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYR 286

Query: 56  -------------PDLDAALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSII 101
                              ++     + IDI FE+ G +   A +   R  G I   +  
Sbjct: 287 FWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCAST 346

Query: 102 SQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM------VY 155
           S Y  E          L     R+ G    +Y              I +G++      VY
Sbjct: 347 SGYMHEYD-----NRYLWMSLKRIIGSHFANYRE-----AWEANRLIAKGRIHPTLSKVY 396

Query: 156 -VEDIAEGLEKISRN 169
            +ED  +    + RN
Sbjct: 397 SLEDTGQAAYDVHRN 411

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 50/195 (25%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------------------- 55
           K+G+ V +  ASG +G    QF K  G   V    S +KE                    
Sbjct: 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGIT 278

Query: 56  --------------PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSII 101
                           L   +     +  DI FE+ G       ++  R  G +      
Sbjct: 279 DDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSS 338

Query: 102 SQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM------VY 155
           S Y         +   L  K  ++ G    ++        +        G +      VY
Sbjct: 339 SGYLHT-----FDNRYLWMKLKKIVGSHGANHEE-----QQATNRLFESGAVVPAMSAVY 388

Query: 156 -VEDIAEGLEKISRN 169
            + + AE    +  +
Sbjct: 389 PLAEAAEACRVVQTS 403

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 30/168 (17%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-------------PDLDAA 61
           ++G  V V +A G VGQ V Q         V    S  K E              D    
Sbjct: 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQE 200

Query: 62  LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV-----------SSIISQYNLEKPE 110
           +KR   +G+DI  + + G      L  ++  G   +            S  S        
Sbjct: 201 VKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQV 260

Query: 111 GVHNLEQLIGKRIRLEGFLAGDYYHLYLK------FLELVIPAIREGK 152
              N  +L  +   + GF   +      +       +E +I    + K
Sbjct: 261 EKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKK 308

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 45/188 (23%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EE 55
           + G+ V  +A++  VGQ V Q A   G   +     +                     EE
Sbjct: 166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE 225

Query: 56  PDLDAALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV----SSIISQYNLEKPE 110
                    +       +    VGGK    +L  +   G +      +      ++    
Sbjct: 226 LRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASV---- 281

Query: 111 GVHNLEQLIGKRIRLEGFLAGDYYH-----LYLKFLELVIPAIREGKMVYV-------ED 158
              +L  LI K ++L GF    +        + + +  +   IR G++          +D
Sbjct: 282 ---SL--LIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQD 336

Query: 159 IAEGLEKI 166
               LE  
Sbjct: 337 YQSALEAS 344

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           + G+ V V    G V     Q AK  G  V+ ++ S+EK                E D  
Sbjct: 188 RAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWV 246

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             +      +G D   E  GG  L   L  +   GRI+V  ++  + +  P     +  L
Sbjct: 247 ERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGP-----VGPL 301

Query: 119 IGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGKM------VY-VEDIAEGLEKISR 168
           + K   ++G   G         LE ++ A+    +       Y   ++ E L  + R
Sbjct: 302 LLKSPVVQGISVGHRRA-----LEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDR 353

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 16/99 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           KKG+YV + AA+G VG ++ Q  K+ G + +  A + EK +                D+ 
Sbjct: 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDIL 206

Query: 60  AALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
             + ++   +G+D  F++VG    +  L  ++ +G    
Sbjct: 207 RQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVS 245

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           K G+YV + AA+G +G ++  +A+  G  V+G+  ++EK E                D  
Sbjct: 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFA 203

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
             ++     +G+D+ ++++G   L   L  +R RG  A 
Sbjct: 204 EVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAA 242

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 58.7 bits (143), Expect = 6e-11
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 16/98 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           K GE +   AA+G VG L  Q+AK  G  ++G+  S EK                  D+ 
Sbjct: 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVA 198

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
             +      +   + ++ VG       L ++  RG + 
Sbjct: 199 KRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVV 236

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 20/130 (15%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           + G+YV + A    VG    Q  ++AG   + +AGS++K               ++ D  
Sbjct: 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFS 220

Query: 60  AALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
            A  ++    G+++  + +GG   +  +  + L GR  +  ++   ++  P       +L
Sbjct: 221 EATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGP----LFSKL 276

Query: 119 IGKRIRLEGF 128
           + KR  L   
Sbjct: 277 LFKRGSLITS 286

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 30/177 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--------------PDLDA 60
           + GE V V  A+G +G    Q AK  G  V+         E                   
Sbjct: 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAK 217

Query: 61  ALKRWF-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI 119
           A++      G+D+  + +GG   D  +  +   GR+ V   +       P     + +L+
Sbjct: 218 AVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLV---VGFAAGGIPT--IKVNRLL 272

Query: 120 GKRIRLEGFLAGDYYH----LYLKFLELVIPAIREGKMVYV------EDIAEGLEKI 166
            +   L G   G++         +    +   + EG    V       +  + L+  
Sbjct: 273 LRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEGMRPPVSARIPLSEGRQALQDF 329

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           ++ + + V+A   A+G L  Q +++    ++    + +                    L 
Sbjct: 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLY 202

Query: 60  AALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
             +       G D   +++GG   + +  ++R  G    
Sbjct: 203 ETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLT 241

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           K  E     AA+G VG +  Q+AK  G  ++G+ G+ +K +                DL 
Sbjct: 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLV 198

Query: 60  AALKRWFP-QGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
             LK     + + + +++VG    +  L  ++ RG + 
Sbjct: 199 ERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMV 236

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLD 59
           K GE V V  ASG VG    Q A+  G  ++G+AG++E                 E +  
Sbjct: 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYI 228

Query: 60  AALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV 97
             +K++   +GIDI  E +    L   L  +   GR+ V
Sbjct: 229 DKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIV 267

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 22/126 (17%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-------------EPDLDAA 61
           + G+ V +    G VG +  Q A   G  V  +A   + E                 D A
Sbjct: 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYA 208

Query: 62  LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK 121
            +    QG D+ ++ +GG +LDA    ++  G +   S +         G H L  L  K
Sbjct: 209 AEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVV--SCLGW-------GTHKLAPLSFK 259

Query: 122 RIRLEG 127
           +    G
Sbjct: 260 QATYSG 265

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 43/172 (25%)

Query: 15  KKGE-YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------------------ 55
             G+ +   +  + AVG+   Q  KL     +     +   +                  
Sbjct: 165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITED 224

Query: 56  ----PDLDAALKRWF---PQGIDIYFENVGGKMLDAVLLNMRLRGRIAV----SSIISQY 104
                +    +K W         +    VGGK    +   +   G +      S      
Sbjct: 225 QNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTI 284

Query: 105 NLEKPEGVHNLEQLIGKRIRLEGFLAGDYY----HLYLKFLELVIPAIREGK 152
                    +L   I K     GF   +       L    L  +I    EGK
Sbjct: 285 PT-------SL--YIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 327

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDLD 59
           +    +  +AA+  +GQ++ Q     G  +V     +E+ +               P   
Sbjct: 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFM 229

Query: 60  AALKRW-FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH----- 113
             L       G  I F+  GG  L   +L          +   S+Y     + V+     
Sbjct: 230 QDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGL 289

Query: 114 -----NLEQLIGKRIRLEGFL 129
                   +  G    + G+L
Sbjct: 290 DTSPTEFNRNFGMAWGMGGWL 310

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 23/133 (17%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------------ 55
           I    +  +G+ + +   +G VG +  Q AK  G  V+ +A   E  E            
Sbjct: 142 ISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLN 201

Query: 56  --PDLDAALKRWFPQGIDIYFENVGGKM-LDAVLLNMRLRGRIAVSSIISQYNLEKPEGV 112
               L    K    + +D  F      M  D ++  ++ RG IA  +I++       E  
Sbjct: 202 HKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIA--TIVA------FEND 253

Query: 113 HNLEQLIGKRIRL 125
            +L  L  K +  
Sbjct: 254 QDLNALKPKSLSF 266

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/191 (10%), Positives = 54/191 (28%), Gaps = 36/191 (18%)

Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------------EPDL 58
           +  K  YV V   S A   +  Q  +L+G   + +      +               P+L
Sbjct: 161 THSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNL 220

Query: 59  DAALKRWFPQGIDIYFENVGG----KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN 114
              ++ +    +    + +          A +   R  G     +   ++   +     +
Sbjct: 221 AQTIRTYTKNNLRYALDCITNVESTTFCFAAIG--RAGGHYVSLNPFPEHAATRKMVTTD 278

Query: 115 LE---QLIGKRIRLEGFLAG----DYYHLYLKFLELVIPAIREGKMVYV---------ED 158
                 + G+              +          +    + +G++V+          + 
Sbjct: 279 WTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDH 338

Query: 159 IAEGLEKISRN 169
           I +G+E + + 
Sbjct: 339 IKQGMELVRKG 349

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------------EPDLDA 60
           K+G+ V + A +G VG L  Q AK  G  V+ +A  +                 E D   
Sbjct: 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLL 210

Query: 61  ALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
           A+       +D   + VGG +    +  ++  G I 
Sbjct: 211 AI----STPVDAVIDLVGGDVGIQSIDCLKETGCIV 242

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 10  LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------------E 55
           L      G+ V +  ASG VG    Q  K    +V         E               
Sbjct: 177 LNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 236

Query: 56  PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIIS 102
             ++  LK    +  D   +NVGG         ++        ++++
Sbjct: 237 GSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVT 281

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 25/129 (19%)

Query: 13  SPKKGEYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKEKEE---------------P 56
            P     + +   +G VG +  Q A+      V+ +A   E +E               P
Sbjct: 168 VPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKP 227

Query: 57  DLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE 116
                          ++      K    +   +  +GR     I             ++ 
Sbjct: 228 LAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFC--LIDDP-------SAFDIM 278

Query: 117 QLIGKRIRL 125
               K + +
Sbjct: 279 LFKRKAVSI 287

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 21/127 (16%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE-------------PDLDAA 61
           + GE V V AA+GA+G    Q A+  G  V+ +A   EK                ++   
Sbjct: 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPER 183

Query: 62  LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK 121
            K     G+D+  E V GK ++  L  +   GR+     I     E         +L+ +
Sbjct: 184 AKA--WGGLDLVLE-VRGKEVEESLGLLAHGGRLVY---IGAAEGEVAPI--PPLRLMRR 235

Query: 122 RIRLEGF 128
            + + GF
Sbjct: 236 NLAVLGF 242

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 20/101 (19%)

Query: 15   KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------PDLDAA------- 61
            + GE V + + SG VGQ     A   GC V  + GS EK        P LD         
Sbjct: 1666 QPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725

Query: 62   -------LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI 95
                   L+    +G+D+   ++  + L A +  +   GR 
Sbjct: 1726 TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRF 1766

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA 61
           + GE + V +A+G VG    Q A+  G  V  +A   + +  +L   
Sbjct: 344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQAVELSRE 390

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK 53
            GE V + +A+G VG      AK+ G  +  +AGS  K
Sbjct: 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK 75

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL--------KRWF 66
            K   V +    GAV  L+ Q    AG  V   + S  +    L A              
Sbjct: 141 TKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVSASLSQ---ALAAKRGVRHLYREPSQV 196

Query: 67  PQGIDIYFENVGGKMLDAVLLNMRLRGRIA 96
            Q     F+ V  +   A++ +++  G I 
Sbjct: 197 TQKYFAIFDAVNSQNAAALVPSLKANGHII 226

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 22/146 (15%)

Query: 15  KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLD 59
             G+ V ++ A G +G +     + +G   ++ S  +  +               E DL 
Sbjct: 163 VSGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLL 221

Query: 60  AALKRWFPQGIDIYFENVG-GKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL 118
             ++R    G+++  E  G    +   L+ +   G   +  I        P       +L
Sbjct: 222 EVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGI-----PSDPIRFDLAGEL 276

Query: 119 IGKRIRLEGFLAGDYYHLYLKFLELV 144
           + + I   G      +  +++   LV
Sbjct: 277 VMRGITAFGIAGRRLWQTWMQGTALV 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.95
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.95
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.95
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.95
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.94
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.94
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.94
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.94
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.93
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.93
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.93
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.93
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.93
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.93
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.93
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.93
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.93
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.93
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.93
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.93
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.93
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.93
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.93
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.93
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.93
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.93
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.93
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.93
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.93
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.92
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.92
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.92
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.92
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.92
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.92
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.92
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.92
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.92
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.92
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.92
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.92
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.92
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.92
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.92
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.92
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.91
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.91
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.91
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.91
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.91
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.91
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.91
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.91
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.9
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.9
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.9
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.9
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.89
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.88
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.87
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.87
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.87
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.87
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.7
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.67
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.51
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.48
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.29
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.25
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.23
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	98.17
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.13
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.13
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.12
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.08
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.07
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.06
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.05
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	98.03
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.02
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	98.02
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.02
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.0
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.0
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.99
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.97
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.94
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.94
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.94
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.93
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.91
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.9
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.9
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.89
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.89
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.89
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.89
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.88
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.87
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.87
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.86
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.86
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.85
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.84
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.84
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.82
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.82
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.81
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.8
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.8
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.79
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.79
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.79
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.79
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.77
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.77
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.77
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.75
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.75
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.75
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.75
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.74
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.73
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.73
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.72
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.72
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.72
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.72
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.72
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.72
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.72
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.72
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.72
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.7
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.7
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.7
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.69
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.69
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.69
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.69
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.69
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.68
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.68
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.67
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.67
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.67
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.67
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.66
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.66
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.65
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.65
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.65
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.65
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.65
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.64
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.64
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.63
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.63
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.62
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.62
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.62
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.62
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.62
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.61
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.61
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.61
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.61
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.61
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.6
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.6
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.6
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.6
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.59
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.59
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.58
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.58
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.58
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.58
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.57
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.57
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.57
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.56
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.56
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.55
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.55
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.55
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.54
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.54
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.54
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.54
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.54
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.54
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.53
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.53
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.53
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.53
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.53
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.52
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.52
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.52
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.52
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.52
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.52
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.51
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.51
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.51
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.51
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.51
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.51
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.51
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.51
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.5
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.5
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.5
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.5
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.5
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.5
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.49
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.49
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.49
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.49
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.48
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.48
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.48
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.48
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.48
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.47
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.47
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.47
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.46
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.46
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.46
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.46
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.45
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.45
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.45
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.44
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.44
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.43
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.43
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.42
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.42
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.41
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.41
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.4
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.4
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.4
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.39
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.39
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.39
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.38
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.38
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.38
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.38
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.38
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.38
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.37
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.37
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.37
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.37
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.36
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.36
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.34
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.34
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.34
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.34
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.33
1spx_A	278	Short-chain reductase family member (5L265); paral	97.33
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.33
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.32
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.3
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.3
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.29
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.29
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.28
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.28
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.27
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.27
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.27
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.27
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.27
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.26
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.26
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.25
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.25
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.24
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.24
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.24
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.24
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.23
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.22
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.22
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.22
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.21
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.21
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.2
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.2
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.18
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.17
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.16
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.15
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.14
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.13
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.13
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	97.12
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.12
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.11
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.1
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.1
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.09
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.09
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	97.09
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.09
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.09
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.09
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.08
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.07
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.06
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.06
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.06
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	97.05
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.02
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.99
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.99
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.99
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.99
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.99
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.99
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.98
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.97
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.97
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.96
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.95
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.95
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.94
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.92
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.92
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.92
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.91
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	96.91
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.9
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.9
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.9
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.89
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.89
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.88
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.88
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.87
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.87
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.87
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.86
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.86
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.85
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.85
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.84
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.83
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.81
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.81
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.8
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.79
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.79
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.79
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.79
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.78
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.76
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.76
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.75
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.74
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.74
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.73
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.73
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.73
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.71
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.71
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.71
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.7
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.69
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.68
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.68
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.68
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.65
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.65
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.62
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.62
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.62
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.6
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.6
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.57
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.55
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.55
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.54
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.54
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.53
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.52
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.51
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.5
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.5
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.49
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	96.49
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.48
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.48
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.46
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	96.45
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.45
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.44
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.44
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.42
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.42
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.4
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.39
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.36
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	96.36
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.34
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.34
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.34
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.32
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.31
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.3
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.3
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.3
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.29
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.28
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.28
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.28
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	96.26
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.26
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.25
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.25
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.24
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.21
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.21
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.21
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.2
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.17
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.16
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.15
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.14
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.11
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.11
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.1
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.09
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.09
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.09
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.08
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	96.06
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	96.06
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.05
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.03
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.02
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.01
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.98
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.98
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.96
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	95.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.93
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.93
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.87
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.86
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.86
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	95.85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.84
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	95.8
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.76
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.74
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.74
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.74
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.73
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.73
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.72
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.71
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.67
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	95.65

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.95  E-value=5.2e-27  Score=175.79  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=146.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++++++               .++++.+.+++.+
T Consensus       134 ~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          134 LTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFT  213 (334)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHh
Confidence            5788999788899999999999999999999999999999999999997664               4567888899988


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch---HHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY---YHLYLKFLE  142 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  142 (180)
                      ++ ++|++|||+|.+.+..++++++++|+++.+|...+     ....++...+..+++++.+++...+   .....+.++
T Consensus       214 ~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (334)
T 3qwb_A          214 NGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASG-----LIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSD  288 (334)
T ss_dssp             TTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTC-----CCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHH
T ss_pred             CCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCCCC-----CCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHH
Confidence            77 89999999999999999999999999999987653     2224455667788999988765443   344556788


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.+++.+|++++.++++||++++++|++.++++.
T Consensus       289 ~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  323 (334)
T 3qwb_A          289 EFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRK  323 (334)
T ss_dssp             HHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.95  E-value=3.7e-27  Score=177.10  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=139.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFP   67 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~   67 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++.+|++|+++++++++              ..+++.+.+++.++
T Consensus       145 ~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~  224 (342)
T 4eye_A          145 HTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATG  224 (342)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhC
Confidence            6899999888999999999999999999999999999999999999998776              22677888999888


Q ss_pred             C-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHHHHHHH
Q 041355           68 Q-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLYLKFLE  142 (180)
Q Consensus        68 ~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  142 (180)
                      + ++|++|||+|++.+..++.+++++|+++.+|...+.     ....+...++.+++++.++....+    +....+.++
T Consensus       225 ~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~  299 (342)
T 4eye_A          225 GAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGG-----IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQA  299 (342)
T ss_dssp             TSCEEEEEESCC--CHHHHHHTEEEEEEEEEC---------------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHH
T ss_pred             CCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCC-----CCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHH
Confidence            8 999999999999999999999999999999875532     123344456788999999886543    233456788


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+.+++.+| +++.++++|+++++++|++.++++.
T Consensus       300 ~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~  333 (342)
T 4eye_A          300 GLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGK  333 (342)
T ss_dssp             HHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCC
Confidence            999999999 9999999999999999999998875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.95  E-value=8.1e-27  Score=174.83  Aligned_cols=176  Identities=41%  Similarity=0.621  Sum_probs=148.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++++++                .++++.+.+++.
T Consensus       135 ~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          135 MTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHh
Confidence            6899999899999999999999999999999999999999999999987654                345778888888


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-CccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-PEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +++++|++|||+|++.+..++++++++|+++.+|......... .....++..++.+++++.++....+....++.++++
T Consensus       215 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  294 (336)
T 4b7c_A          215 CPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEM  294 (336)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHH
T ss_pred             cCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHH
Confidence            8669999999999989999999999999999998766322111 123455567888999999998766544456789999


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++|++++.+..+++++++++|++.++++.
T Consensus       295 ~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  327 (336)
T 4b7c_A          295 ATWLAEGKLQSREDIVEGLETFPETLLKLFSGE  327 (336)
T ss_dssp             HHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             HHHHHCCCcccceeeecCHHHHHHHHHHHHcCC
Confidence            999999999998888899999999999998874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.95  E-value=1.2e-26  Score=173.16  Aligned_cols=171  Identities=22%  Similarity=0.226  Sum_probs=143.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++++++               .++++.+.+++.+
T Consensus       126 ~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          126 LTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence            5789999888899999999999999999999999999999999999988665               4567888899988


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhc-CcEEEeeeccch---HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK-RIRLEGFLAGDY---YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~  141 (180)
                      ++ ++|++|||+|.+.+..++++++++|+++.+|...+.     ...++...+..+ .+.+.+.....+   +....+.+
T Consensus       206 ~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGP-----VSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMA  280 (325)
T ss_dssp             TTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCC-----CCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHH
T ss_pred             CCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCC-----CCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHH
Confidence            87 999999999999999999999999999999876532     223455555555 566665543322   34456678


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|++++.++++||++++++|++.++++.
T Consensus       281 ~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  316 (325)
T 3jyn_A          281 DELFDMLASGKLKVDGIEQYALKDAAKAQIELSARR  316 (325)
T ss_dssp             HHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCC
Confidence            899999999999999999999999999999998874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.95  E-value=6.5e-27  Score=176.43  Aligned_cols=172  Identities=20%  Similarity=0.264  Sum_probs=145.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++++++               .++++.+.+++.+
T Consensus       153 ~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          153 FTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET  232 (353)
T ss_dssp             HHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh
Confidence            6899999888999999999999999999999999999999999999988765               4567778888888


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchH-----HHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYY-----HLYLKFL  141 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  141 (180)
                      ++++|++|||+|++.+..++.+++++|+++.+|...+.    ....++...++.+++++.++......     ......+
T Consensus       233 ~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~  308 (353)
T 4dup_A          233 GQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGA----VAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLL  308 (353)
T ss_dssp             SSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCS----EEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCC----cccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHH
Confidence            55999999999999999999999999999999876532    11125566788899999998875541     1223447


Q ss_pred             HHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|++++.++++|+++++++|++.++++.
T Consensus       309 ~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~  344 (353)
T 4dup_A          309 SEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGS  344 (353)
T ss_dssp             HHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCC
Confidence            889999999999999999999999999999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.94  E-value=8.9e-27  Score=176.30  Aligned_cols=165  Identities=23%  Similarity=0.237  Sum_probs=143.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|++|+++++++++               +.+++.+.+++.+
T Consensus       175 ~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          175 LTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALT  253 (363)
T ss_dssp             HHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHh
Confidence            57899998889999999999999 8999999999999999999999988665               2357888899988


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      ++ ++|++|||+|.+.+..++++++++|+++.+|.....     ...++...++.+++++.++....     .+.+++++
T Consensus       254 ~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  323 (363)
T 3uog_A          254 GDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGF-----EVSGPVGPLLLKSPVVQGISVGH-----RRALEDLV  323 (363)
T ss_dssp             TTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSC-----EECCBTTHHHHTCCEEEECCCCC-----HHHHHHHH
T ss_pred             CCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCc-----ccCcCHHHHHhCCcEEEEEecCC-----HHHHHHHH
Confidence            87 999999999988999999999999999999876531     23445567788999999988765     45688899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|.+++.++++|+++++++|++.++++.
T Consensus       324 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  355 (363)
T 3uog_A          324 GAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP  355 (363)
T ss_dssp             HHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC
T ss_pred             HHHHcCCCccceeeEEcHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999987763

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.94  E-value=1e-25  Score=169.41  Aligned_cols=176  Identities=66%  Similarity=1.016  Sum_probs=142.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------Cc-chHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EE-PDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~-~~~~~~~~~   64 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++++++                .+ .++.+.+++
T Consensus       141 ~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          141 MTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKR  220 (345)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHH
Confidence            5899999888899999999999999999999999999999999999987543                11 255667777


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .+++++|++|||+|.+.+..++++++++|+++.+|..............+...++.+++++.++....+.....+.++++
T Consensus       221 ~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  300 (345)
T 2j3h_A          221 CFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFV  300 (345)
T ss_dssp             HCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHH
T ss_pred             HhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHH
Confidence            76568999999999988899999999999999998765321111122344556778899999877654333345678999


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|++++.+..+++++++++|++.++++.
T Consensus       301 ~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~  333 (345)
T 2j3h_A          301 LPHIREGKITYVEDVADGLEKAPEALVGLFHGK  333 (345)
T ss_dssp             HHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTC
T ss_pred             HHHHHCCCCcCcccccCCHHHHHHHHHHHHcCC
Confidence            999999999998888899999999999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.94  E-value=1.2e-25  Score=170.08  Aligned_cols=161  Identities=14%  Similarity=0.099  Sum_probs=137.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC-------------------CcchHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK-------------------EEPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~-------------------~~~~~~~~   61 (180)
                      .+||+++ +..++++|++|||+|+ |++|++++|+||.+|++ |+++++++++                   +++++.+.
T Consensus       166 ~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~  243 (363)
T 3m6i_A          166 SVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKK  243 (363)
T ss_dssp             HHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHH
Confidence            5899999 8899999999999996 99999999999999996 9988877654                   13567788


Q ss_pred             HHhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHH
Q 041355           62 LKRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLK  139 (180)
Q Consensus        62 ~~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +++.+++ ++|++|||+|++ .+..++++++++|+++.+|....      ...++...++.+++++.++...      .+
T Consensus       244 v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~------~~  311 (363)
T 3m6i_A          244 IVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKN------EIQIPFMRASVREVDLQFQYRY------CN  311 (363)
T ss_dssp             HHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCS------CCCCCHHHHHHHTCEEEECCSC------SS
T ss_pred             HHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCC------CccccHHHHHhcCcEEEEccCC------HH
Confidence            8888877 999999999987 78999999999999999987542      2235666788899999888754      24


Q ss_pred             HHHHHHHHHHCCCc--cceeeeecchhhHHHHHHHHHhh
Q 041355          140 FLELVIPAIREGKM--VYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       140 ~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++++.+|++  ++.++++||++++++|++.++++
T Consensus       312 ~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  350 (363)
T 3m6i_A          312 TWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDP  350 (363)
T ss_dssp             CHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhcc
Confidence            57788999999998  66789999999999999999887

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.94  E-value=1.4e-25  Score=168.63  Aligned_cols=166  Identities=17%  Similarity=0.216  Sum_probs=139.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~   68 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++..|++|+++ .++++             ..+++.+.+++.+++
T Consensus       136 ~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~  214 (343)
T 3gaz_A          136 ITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAG  214 (343)
T ss_dssp             HHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcC
Confidence            5799999888999999999999999999999999999999999998 55443             234567778888877


Q ss_pred             -CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch------HHHHHHHH
Q 041355           69 -GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY------YHLYLKFL  141 (180)
Q Consensus        69 -~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  141 (180)
                       ++|++|||+|++.+..++.+++++|+++.++...         ..+...+..+++++.++.....      .....+.+
T Consensus       215 ~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  285 (343)
T 3gaz_A          215 QGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG---------THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEML  285 (343)
T ss_dssp             SCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCCS---------CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHH
T ss_pred             CCceEEEECCCcHHHHHHHHHHhcCCeEEEEcccC---------ccccchhhhcCcEEEEEEeccchhcccchHHHHHHH
Confidence             9999999999989999999999999999997643         2344567788999988765321      23345789


Q ss_pred             HHHHHHHHCCCccceee-eecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVED-IAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+++.+|++++.++ ++|+++++++|++.++++.
T Consensus       286 ~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~  322 (343)
T 3gaz_A          286 READALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRN  322 (343)
T ss_dssp             HHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCC
Confidence            99999999999999998 7999999999999998874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.93  E-value=4.8e-25  Score=165.83  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=138.0

Q ss_pred             chHHHHHHHHcCCC------CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHH
Q 041355            2 LIVGNLIILVCSPK------KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~------~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~   61 (180)
                      ++||+++.+..+++      +|++|||+||+|++|++++|+||.+|++|+++++++++              ..+++.+.
T Consensus       130 ~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  209 (346)
T 3fbg_A          130 ITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQ  209 (346)
T ss_dssp             HHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHH
T ss_pred             HHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHH
Confidence            58999998889998      99999999999999999999999999999999997665              23467777


Q ss_pred             HHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-------
Q 041355           62 LKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-------  133 (180)
Q Consensus        62 ~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  133 (180)
                      +++..++++|++|||+|++ .+..++++++++|+++.++...        ...++..+..+++++.+......       
T Consensus       210 ~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (346)
T 3fbg_A          210 FKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--------NDQDLNALKPKSLSFSHEFMFARPLNQTDD  281 (346)
T ss_dssp             HHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--------SCBCGGGGTTTTCEEEECCTTHHHHTTCTT
T ss_pred             HHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCC--------CCCccccccccceEEEEEEEecccccchhh
Confidence            8777444999999999987 6789999999999999886422        23444566778888888655431       


Q ss_pred             HHHHHHHHHHHHHHHHCCCccceeeeec---chhhHHHHHHHHHhhh
Q 041355          134 YHLYLKFLELVIPAIREGKMVYVEDIAE---GLEKISRNCYTLKWRV  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~l~~~~  177 (180)
                      .....+.++++.+++.+|++++.+++++   +++++++|++.++++.
T Consensus       282 ~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~  328 (346)
T 3fbg_A          282 MIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNT  328 (346)
T ss_dssp             THHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCC
Confidence            2234577899999999999999988877   8999999999998874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.93  E-value=3.2e-25  Score=168.63  Aligned_cols=168  Identities=17%  Similarity=0.143  Sum_probs=138.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C--cchHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E--EPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~--~~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+|+ |++|++++|+||.+|+ +|+++++++++               .  ++++.+.++
T Consensus       179 ~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          179 PTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHH
Confidence            578999988899999999999995 9999999999999999 89999988776               1  467888999


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|+. .+..++++++++ |+++.+|....    ......+...++. ++++.|+....+.  ..+.+
T Consensus       258 ~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~----~~~~~~~~~~~~~-~~~i~g~~~~~~~--~~~~~  330 (378)
T 3uko_A          258 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS----GQEISTRPFQLVT-GRVWKGTAFGGFK--SRTQV  330 (378)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCT----TCCEEECTHHHHT-TCEEEECSGGGCC--HHHHH
T ss_pred             HhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCC----CCccccCHHHHhc-CcEEEEEEecCCC--chHHH
Confidence            99888999999999985 889999999996 99999987542    1122334444444 7888888765331  24568


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++++++.+|+++  ++++++|||+++++|++.++++.
T Consensus       331 ~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~  368 (378)
T 3uko_A          331 PWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGT  368 (378)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTT
T ss_pred             HHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCC
Confidence            8899999999887  56899999999999999987763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.93  E-value=2.4e-25  Score=166.71  Aligned_cols=171  Identities=19%  Similarity=0.214  Sum_probs=141.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++               .++++.+.+.+.+
T Consensus       131 ~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          131 MTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREIT  210 (333)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHh
Confidence            6899999778899999999999999999999999999999999999998754               3456677777777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchH-HHhhcC--cEEEeeeccc--hHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-QLIGKR--IRLEGFLAGD--YYHLYLKF  140 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~~~~~  140 (180)
                      .+ ++|++|||+|+..+..++++++++|+++.+|...+.     ...++.. .++.++  +++.|+....  .+....+.
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  285 (333)
T 1wly_A          211 GGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGV-----ADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEG  285 (333)
T ss_dssp             TTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCC-----CCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHH
T ss_pred             CCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCC-----cCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHH
Confidence            65 899999999998899999999999999999875421     2234555 566778  8888875421  12333567


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+++.+|++++.++++||++++++|++.++++.
T Consensus       286 ~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  322 (333)
T 1wly_A          286 SKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQ  322 (333)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCS
T ss_pred             HHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999988753

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.93  E-value=1.2e-24  Score=163.23  Aligned_cols=169  Identities=11%  Similarity=0.189  Sum_probs=137.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+++.+|++|+++++++++               .++++.+.+++.+
T Consensus       130 ~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~  209 (340)
T 3gms_A          130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELT  209 (340)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHh
Confidence            5789999899999999999999988899999999999999999999998876               3467888899988


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHh-hcCcEEEeeeccch-----HHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI-GKRIRLEGFLAGDY-----YHLYLK  139 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~  139 (180)
                      ++ ++|++|||+|++.....+.+++++|+++.+|...+.       ..++..+. ...+.+..+....+     .....+
T Consensus       210 ~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (340)
T 3gms_A          210 NGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGI-------QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQE  282 (340)
T ss_dssp             TTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTSC-------CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHH
T ss_pred             CCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecCCC-------CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHH
Confidence            87 999999999998777778999999999999875431       22332222 23455554443322     233457


Q ss_pred             HHHHHHHHHHCCCccc-eeeeecchhhHHHHHHHHHhhh
Q 041355          140 FLELVIPAIREGKMVY-VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++++++++.+|++++ .++++||++++++|++.++++.
T Consensus       283 ~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~  321 (340)
T 3gms_A          283 TFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAE  321 (340)
T ss_dssp             HHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcC
Confidence            8899999999999998 5789999999999999998874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=3.8e-25  Score=166.64  Aligned_cols=167  Identities=23%  Similarity=0.243  Sum_probs=139.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++               .++++.+.+.+.+
T Consensus       156 ~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV  235 (351)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHc
Confidence            5899999878899999999999999999999999999999999999987654               3456777788877


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      ++ ++|++|||+|++.+..++++++++|+++.+|...       ...++...++.+++++.++..... .....+.++.+
T Consensus       236 ~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l  308 (351)
T 1yb5_A          236 GEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG-------TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAAL  308 (351)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS-------CEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCChHHHHHHHHhccCCCEEEEEecCC-------CCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHH
Confidence            76 8999999999888889999999999999998532       123445567788999999865332 34456677888


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHH-HHh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYT-LKW  175 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~-l~~  175 (180)
                      .+++.+|++++.++++||++++++|++. +++
T Consensus       309 ~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~  340 (351)
T 1yb5_A          309 QAGMEIGWLKPVIGSQYPLEKVAEAHENIIHG  340 (351)
T ss_dssp             HHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHS
T ss_pred             HHHHHCCCccCccceEEcHHHHHHHHHHHHHh
Confidence            8899999999999999999999999998 554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=167.76  Aligned_cols=176  Identities=21%  Similarity=0.197  Sum_probs=132.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~------------~~~~~~~~~~~~~~~   68 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+||.+| ++|+++++++..            .++++.+.+++.+++
T Consensus       128 ~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~  207 (349)
T 4a27_A          128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAE  207 (349)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHGGGSSEEEETTSCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHcCCcEEEcCCccHHHHHHHhcCC
Confidence            5899999888999999999999988999999999999996 589988854322            345678888888877


Q ss_pred             CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-----------CccccchHHHhhcCcEEEeeeccch----
Q 041355           69 GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-----------PEGVHNLEQLIGKRIRLEGFLAGDY----  133 (180)
Q Consensus        69 ~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~----  133 (180)
                      ++|++|||+|++.+..++++++++|+++.+|.........           .....++..++.++.++.++....+    
T Consensus       208 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~  287 (349)
T 4a27_A          208 GVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQ  287 (349)
T ss_dssp             CEEEEEEECC-------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTS
T ss_pred             CceEEEECCCchhHHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccc
Confidence            9999999999987788999999999999998754211100           0123455677888899998876432    


Q ss_pred             --HHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          134 --YHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       134 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                        ....++.++++++++++|++++.++++|+++++++|++.++++.
T Consensus       288 ~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~  333 (349)
T 4a27_A          288 GRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRG  333 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCC
Confidence              12346789999999999999999999999999999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.93  E-value=1.8e-25  Score=173.70  Aligned_cols=166  Identities=20%  Similarity=0.229  Sum_probs=137.7

Q ss_pred             chHHHHHHHH--cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Ccc--------
Q 041355            2 LIVGNLIILV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEP--------   56 (180)
Q Consensus         2 l~a~~~l~~~--~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~--------   56 (180)
                      ++||+++...  .++++|++|+|+||+|++|++++|+||.+|++|+++++++++               .++        
T Consensus       212 ~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~  291 (456)
T 3krt_A          212 STAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDE  291 (456)
T ss_dssp             HHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEET
T ss_pred             HHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccc
Confidence            5788888654  789999999999988999999999999999999998877654               111        


Q ss_pred             ---------hHHHHHHhHcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEE
Q 041355           57 ---------DLDAALKRWFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLE  126 (180)
Q Consensus        57 ---------~~~~~~~~~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (180)
                               ++.+.+++.+++ ++|++|||+|++.+..++.+++++|+++.+|...+.     ...++...+..+.+++.
T Consensus       292 ~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~  366 (456)
T 3krt_A          292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGY-----MHEYDNRYLWMSLKRII  366 (456)
T ss_dssp             TEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCS-----EEEEEHHHHHHTTCEEE
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCc-----ccccCHHHHHhcCeEEE
Confidence                     234778888887 999999999999999999999999999999875531     22445567778888999


Q ss_pred             eeeccchHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          127 GFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      |+.....     ..+.++++++.+|++++.++++|+|+++++|++.++++.
T Consensus       367 g~~~~~~-----~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~  412 (456)
T 3krt_A          367 GSHFANY-----REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNL  412 (456)
T ss_dssp             ECCSCCH-----HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             EeccCCH-----HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCC
Confidence            9887653     234468999999999999999999999999999988764

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.93  E-value=9e-26  Score=184.98  Aligned_cols=169  Identities=15%  Similarity=0.124  Sum_probs=141.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~   68 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|+||.+|++|++++++++.             ++.++.+.+++.+++
T Consensus       331 ~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~~~l~lga~~v~~~~~~~~~~~i~~~t~g  410 (795)
T 3slk_A          331 LTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQAVELSREHLASSRTCDFEQQFLGATGG  410 (795)
T ss_dssp             HHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGGGGSCSCGGGEECSSSSTHHHHHHHHSCS
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHhhhhhcChhheeecCChhHHHHHHHHcCC
Confidence            6788888888999999999999999999999999999999999999987642             456788999999988


Q ss_pred             -CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHHHH
Q 041355           69 -GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELVIP  146 (180)
Q Consensus        69 -~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  146 (180)
                       ++|++|||+|++.+..++++++++|+++.+|.....      .... .....+++++.++..... +....+.++++.+
T Consensus       411 ~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~------~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  483 (795)
T 3slk_A          411 RGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVR------DPVE-VADAHPGVSYQAFDTVEAGPQRIGEMLHELVE  483 (795)
T ss_dssp             SCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCC------CHHH-HHHHSSSEEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcHHHHHHHHHhcCCCEEEEecccccc------Cccc-ccccCCCCEEEEeeccccCHHHHHHHHHHHHH
Confidence             999999999999999999999999999999865421      1111 122346777777765432 4445678999999


Q ss_pred             HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          147 AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       147 ~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++|+++|.++++||++++++||+.++++.
T Consensus       484 l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~  514 (795)
T 3slk_A          484 LFEGRVLEPLPVTAWDVRQAPEALRHLSQAR  514 (795)
T ss_dssp             HHHTTSCCCCCEEEEEGGGHHHHHHHHHHTC
T ss_pred             HHHcCCcCCCcceeEcHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=5.1e-25  Score=164.51  Aligned_cols=171  Identities=23%  Similarity=0.203  Sum_probs=140.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++               .++++.+.+.+.+
T Consensus       126 ~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEIT  205 (327)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHh
Confidence            6899999778899999999999999999999999999999999999987654               3456777788877


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhc-CcEEEeeeccch---HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK-RIRLEGFLAGDY---YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~  141 (180)
                      .+ ++|++|||+|.+.+..++++++++|+++.++...+.     ...++...++.+ ++++.+.....+   .....+.+
T Consensus       206 ~~~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (327)
T 1qor_A          206 GGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEAS  280 (327)
T ss_dssp             TTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHH
T ss_pred             CCCCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCC-----CCccCHHHHhhccceEEEccchhhhcCCHHHHHHHH
Confidence            66 899999999977999999999999999999875431     123455566666 777766543221   23345678


Q ss_pred             HHHHHHHHCCCccceee--eecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVED--IAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~--~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|++++.++  ++|+++++++|++.++++.
T Consensus       281 ~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~  318 (327)
T 1qor_A          281 NELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRA  318 (327)
T ss_dssp             HHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCC
Confidence            99999999999999998  9999999999999998763

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.93  E-value=1.8e-25  Score=167.97  Aligned_cols=166  Identities=25%  Similarity=0.314  Sum_probs=139.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|||+|++|++|++++|+++..|++|+++++++++               .++++.+.+++.+
T Consensus       152 ~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~  231 (343)
T 2eih_A          152 LTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLT  231 (343)
T ss_dssp             HHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHh
Confidence            5899999666789999999999999999999999999999999999987654               3346677788887


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      ++ ++|++|||+|.+.+..++++++++|+++.++.....     ...+++..++.+++++.++....     .+.+++++
T Consensus       232 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~  301 (343)
T 2eih_A          232 GGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-----EGTLPFAHVFYRQLSILGSTMAS-----KSRLFPIL  301 (343)
T ss_dssp             TTTCEEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSC-----CCCCCTTHHHHTTCEEEECCSCC-----GGGHHHHH
T ss_pred             CCCCceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCC-----cCccCHHHHHhCCcEEEEecCcc-----HHHHHHHH
Confidence            66 899999999977899999999999999999876432     12344556778899999876433     34578899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.++++|+++++++|++.++++.
T Consensus       302 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  333 (343)
T 2eih_A          302 RFVEEGKLKPVVGQVLPLEAAAEGHRLLEERR  333 (343)
T ss_dssp             HHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCceeEEeeHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999988763

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.93  E-value=1.8e-25  Score=169.48  Aligned_cols=164  Identities=16%  Similarity=0.157  Sum_probs=138.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHh-
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKR-   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~-   64 (180)
                      ++||+++ +..++++|++|||+|+ |++|++++|+||.+|+ +|+++++++++               .++++.+.+++ 
T Consensus       169 ~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          169 ACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHST
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhh
Confidence            5789998 8899999999999995 9999999999999999 89988887665               35677888888 


Q ss_pred             --HcCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           65 --WFPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        65 --~~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                        .+++++|++|||+|. +.+..++++++++|+++.+|.....    ....++...++.+++++.|+....      ..+
T Consensus       247 ~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~------~~~  316 (370)
T 4ej6_A          247 VGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQG----EKVEIEPFDILFRELRVLGSFINP------FVH  316 (370)
T ss_dssp             TSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTT----CCCCCCHHHHHHTTCEEEECCSCT------TCH
T ss_pred             hhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCC----CccccCHHHHHhCCcEEEEeccCh------HHH
Confidence              676799999999995 4899999999999999999875431    233566778899999999987654      236


Q ss_pred             HHHHHHHHCCCc--cceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKM--VYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~--~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|++  .++++++|||+++++|++.++++.
T Consensus       317 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  354 (370)
T 4ej6_A          317 RRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAG  354 (370)
T ss_dssp             HHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTT
T ss_pred             HHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCC
Confidence            789999999999  457899999999999999887654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.93  E-value=5.5e-25  Score=166.13  Aligned_cols=171  Identities=18%  Similarity=0.212  Sum_probs=133.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Cc--chHH----HHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EE--PDLD----AALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~--~~~~----~~~~   63 (180)
                      ++||+++.+..++++|++|||+||+|++|++++|+||.+|+++++++++++.            .+  -+..    +.+.
T Consensus       153 ~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~  232 (357)
T 1zsy_A          153 CTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMK  232 (357)
T ss_dssp             HHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGG
T ss_pred             HHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHH
Confidence            5899999888899999999999999999999999999999998888876532            00  0111    2334


Q ss_pred             hHcCC--CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HHH
Q 041355           64 RWFPQ--GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YHL  136 (180)
Q Consensus        64 ~~~~~--~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  136 (180)
                      +.+.+  ++|++|||+|++....++++++++|+++.+|....     ....++...+..+++++.++....+     +..
T Consensus       233 ~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  307 (357)
T 1zsy_A          233 NFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAK-----QPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQ  307 (357)
T ss_dssp             GTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTT-----CCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHH
T ss_pred             HHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCC-----CCCCCCHHHHHhcCceEEEEEcchhcccCCHHH
Confidence            44443  59999999998877778999999999999975432     1224455667789999999876432     223


Q ss_pred             HHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          137 YLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       137 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++.++++++++.+|++++.+.++||++++++|++.++++.
T Consensus       308 ~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  348 (357)
T 1zsy_A          308 FKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPF  348 (357)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCC
Confidence            45678899999999999998889999999999999987663

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.93  E-value=3.4e-25  Score=167.12  Aligned_cols=171  Identities=22%  Similarity=0.292  Sum_probs=139.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++               .++++.+.+.+.+
T Consensus       148 ~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFT  227 (354)
T ss_dssp             HHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHh
Confidence            6899999888899999999999999999999999999999999999987654               3456777888887


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchH-HH----HHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYY-HL----YLK  139 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~----~~~  139 (180)
                      ++ ++|++|||+|++.+..++++++++|+++.+|...+.     ...+++ ..++.+++++.++...... ..    ...
T Consensus       228 ~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  302 (354)
T 2j8z_A          228 KGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG-----DINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNA  302 (354)
T ss_dssp             TTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTCS-----CCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHH
T ss_pred             cCCCceEEEECCCchHHHHHHHhccCCCEEEEEeccCCC-----ccCCChhHHHHhCCCEEEEEEcccccccccHHHHHH
Confidence            76 899999999999999999999999999999875431     223555 6677889999998764421 11    123


Q ss_pred             HHHHHHHHHHCC---CccceeeeecchhhHHHHHHHHHhhh
Q 041355          140 FLELVIPAIREG---KMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       140 ~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .++++++++.+|   ++++.++++||++++++|++.++++.
T Consensus       303 ~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~  343 (354)
T 2j8z_A          303 FTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANK  343 (354)
T ss_dssp             HHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCC
Confidence            445688899999   99999999999999999999988753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.93  E-value=1.6e-25  Score=168.56  Aligned_cols=168  Identities=17%  Similarity=0.185  Sum_probs=137.0

Q ss_pred             chHHHHHHHHcCCCCC-CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKG-EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g-~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +..+ ++| ++++|+||+|++|++++|+||.+|++|+++++++++               +++++.+.+++.
T Consensus       151 ~ta~~~~-~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~  228 (349)
T 3pi7_A          151 LTAIAMF-DIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREV  228 (349)
T ss_dssp             HHHHHHH-HHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHH
T ss_pred             HHHHHHH-HHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHH
Confidence            5788655 5566 666 799999999999999999999999999999988776               456788888888


Q ss_pred             cCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchH----HHHHH
Q 041355           66 FPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYY----HLYLK  139 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~  139 (180)
                      +++ ++|++|||+|++.+..++.+++++|+++.+|.....     ....+. ..++.+++++.++....+.    ....+
T Consensus       229 ~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  303 (349)
T 3pi7_A          229 MKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPD-----ATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGP  303 (349)
T ss_dssp             HHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCS-----CCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHH
T ss_pred             hcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCC-----CCCCCchhhhhccccEEEEEEehhhhhhCcHHHHH
Confidence            876 999999999999888999999999999999865532     223444 6788899999998875541    23356


Q ss_pred             HHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhh
Q 041355          140 FLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .++++++++.+|++++.++++|+++++++|++.++++
T Consensus       304 ~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~  340 (349)
T 3pi7_A          304 AILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAELTK  340 (349)
T ss_dssp             HHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCcccccceEEcHHHHHHHHHHHhCC
Confidence            7888999999999999999999999999999965543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.93  E-value=2e-24  Score=163.37  Aligned_cols=175  Identities=29%  Similarity=0.450  Sum_probs=140.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+|+..|++|+++++++++               .++++.+.+++.+
T Consensus       149 ~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          149 TTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhc
Confidence            6899999888899999999999999999999999999999999999988654               3456677777777


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC---Cc--cccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK---PE--GVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++++|++|||+|...+..++++++++|+++.++.........   ..  ..+ ...++.+++++.++....+.....+.+
T Consensus       229 ~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~  307 (362)
T 2c0c_A          229 PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAM  307 (362)
T ss_dssp             TTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHH
Confidence            568999999999988999999999999999998765321100   00  011 246778899999987654333345678


Q ss_pred             HHHHHHHHCCCccceee--------eecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMVYVED--------IAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~--------~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|++++.+.        +.++++++++|++.++++.
T Consensus       308 ~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~  351 (362)
T 2c0c_A          308 SHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGK  351 (362)
T ss_dssp             HHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCC
Confidence            99999999999998654        5689999999999988763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.93  E-value=6e-25  Score=165.24  Aligned_cols=164  Identities=16%  Similarity=0.114  Sum_probs=137.6

Q ss_pred             CchHHHHHHH-HcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--------------CcchHHHHHHh
Q 041355            1 MLIVGNLIIL-VCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--------------EEPDLDAALKR   64 (180)
Q Consensus         1 ~l~a~~~l~~-~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--------------~~~~~~~~~~~   64 (180)
                      ++|||+++.+ ..++++|++|+|+|+ |++|++++|+||.+ +++|+++++++++              ...++.+.+++
T Consensus       155 ~~ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~  233 (345)
T 3jv7_A          155 GLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRE  233 (345)
T ss_dssp             THHHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHH
Confidence            3689999966 458999999999995 99999999999999 6699999988765              23467888999


Q ss_pred             HcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+++ ++|++|||+|++ .+..++++++++|+++.+|.....     ...++. .++.+++++.++....     .+.++
T Consensus       234 ~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~-~~~~~~~~i~g~~~~~-----~~~~~  302 (345)
T 3jv7_A          234 LTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGA-----HAKVGF-FMIPFGASVVTPYWGT-----RSELM  302 (345)
T ss_dssp             HHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTC-----CEEEST-TTSCTTCEEECCCSCC-----HHHHH
T ss_pred             HhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCC-----CCCcCH-HHHhCCCEEEEEecCC-----HHHHH
Confidence            8887 999999999987 899999999999999999876531     122333 6678889999888765     35688


Q ss_pred             HHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++++|++++. +++|+++++++|++.++++.
T Consensus       303 ~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~  336 (345)
T 3jv7_A          303 EVVALARAGRLDIH-TETFTLDEGPAAYRRLREGS  336 (345)
T ss_dssp             HHHHHHHTTCCCCC-EEEECSTTHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCceE-EEEEcHHHHHHHHHHHHcCC
Confidence            89999999999984 58999999999999998875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.93  E-value=2e-24  Score=163.12  Aligned_cols=173  Identities=29%  Similarity=0.404  Sum_probs=141.9

Q ss_pred             chHHHHHHHHcCCCCC--CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHHHHH
Q 041355            2 LIVGNLIILVCSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g--~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~~~~   62 (180)
                      ++||+++.+..++++|  ++|+|+||+|++|++++|+++..|+ +|+++++++++                .++++.+.+
T Consensus       144 ~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~  223 (357)
T 2zb4_A          144 LTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQL  223 (357)
T ss_dssp             HHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence            6899999888999999  9999999999999999999999999 99999987643                234667778


Q ss_pred             HhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccc-------hHHHhhcCcEEEeeeccchHH
Q 041355           63 KRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHN-------LEQLIGKRIRLEGFLAGDYYH  135 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  135 (180)
                      ++.+.+++|++|||+|+..+..++++++++|+++.+|.......   .....       ...++.+++++.++....+..
T Consensus       224 ~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  300 (357)
T 2zb4_A          224 RESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNK---DVPYPPPLSPAIEAIQKERNITRERFLVLNYKD  300 (357)
T ss_dssp             HHHCTTCEEEEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTS---CCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGG
T ss_pred             HHhcCCCCCEEEECCCHHHHHHHHHHhccCcEEEEECCcccccc---CccccccchhhhhhhhhcceeEEEEeehhhhhH
Confidence            87776689999999999899999999999999999987653210   11111       145678899999887644333


Q ss_pred             HHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          136 LYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ...+.++++++++.+|++++.+..+|+++++++|++.++++.
T Consensus       301 ~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  342 (357)
T 2zb4_A          301 KFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGG  342 (357)
T ss_dssp             GHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCC
Confidence            346678999999999999998777899999999999998763

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=4.6e-25  Score=167.81  Aligned_cols=163  Identities=16%  Similarity=0.133  Sum_probs=138.5

Q ss_pred             chHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C---cchHHHH
Q 041355            2 LIVGNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E---EPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~---~~~~~~~   61 (180)
                      ++||+++ +..+ +++|++|||+| +|++|++++|+||.+|+ +|+++++++++               +   ++++.+.
T Consensus       181 ~ta~~al-~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~  258 (380)
T 1vj0_A          181 ATAYHAF-DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKA  258 (380)
T ss_dssp             HHHHHHH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHH
Confidence            5899999 6788 99999999999 89999999999999995 99999988765               2   4567778


Q ss_pred             HHhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccc-cccCCCCccccchHH-HhhcCcEEEeeeccchHHHH
Q 041355           62 LKRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIIS-QYNLEKPEGVHNLEQ-LIGKRIRLEGFLAGDYYHLY  137 (180)
Q Consensus        62 ~~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  137 (180)
                      +++.+++ ++|++|||+|.. .+..++++++++|+++.+|... ..     ...+++.. ++.+++++.++....     
T Consensus       259 v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~-----  328 (380)
T 1vj0_A          259 IMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD-----PVPFKVYEWLVLKNATFKGIWVSD-----  328 (380)
T ss_dssp             HHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCC-----CEEECHHHHTTTTTCEEEECCCCC-----
T ss_pred             HHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCC-----CeeEchHHHHHhCCeEEEEeecCC-----
Confidence            8888887 899999999975 8899999999999999998754 21     12345556 778999999987654     


Q ss_pred             HHHHHHHHHHHHC--CCccceeeeecchhhHHHHHHHHHhh
Q 041355          138 LKFLELVIPAIRE--GKMVYVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       138 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      .+.++++++++.+  |++++.++++|+++++++|++.++++
T Consensus       329 ~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~  369 (380)
T 1vj0_A          329 TSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESR  369 (380)
T ss_dssp             HHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcC
Confidence            4568899999999  99999999999999999999998775

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.93  E-value=1.5e-24  Score=164.61  Aligned_cols=166  Identities=17%  Similarity=0.135  Sum_probs=134.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       177 ~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          177 ATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHH
Confidence            57898888888999999999999 69999999999999999 89999888776               11  45788888


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|. +.+..++++++++ |+++.+|.....    ....+++..++.++ ++.++....+.   .+.+
T Consensus       256 ~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~~~~~~---~~~~  327 (373)
T 1p0f_A          256 EKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN----ERLPLDPLLLLTGR-SLKGSVFGGFK---GEEV  327 (373)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTT----CCEEECTHHHHTTC-EEEECSGGGCC---GGGH
T ss_pred             HHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCC----CccccCHHHhccCc-eEEeeccCCcC---HHHH
Confidence            8887799999999997 4889999999999 999999865421    12234445566677 88887654321   1457


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++++.+|+++  ++++++||++++++|++.++++
T Consensus       328 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  364 (373)
T 1p0f_A          328 SRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSG  364 (373)
T ss_dssp             HHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTS
T ss_pred             HHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCC
Confidence            8899999999987  5788999999999999998765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=1.5e-24  Score=164.55  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=138.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               +++++.+.+++.
T Consensus       176 ~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          176 QTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHh
Confidence            57899998888999999999999 69999999999999999 79999887665               345677888888


Q ss_pred             cCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +++++|++|||+|.. .+..++++++++|+++.+|.....    ....+++..++.+++++.++......  .++.++++
T Consensus       255 ~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~  328 (371)
T 1f8f_A          255 TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLG----TTAQFDVNDLLLGGKTILGVVEGSGS--PKKFIPEL  328 (371)
T ss_dssp             TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTT----CCCCCCHHHHHHTTCEEEECSGGGSC--HHHHHHHH
T ss_pred             cCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCC----CccccCHHHHHhCCCEEEEeCCCCCc--hHHHHHHH
Confidence            877999999999974 889999999999999999875421    12345666778889999988764321  24668899


Q ss_pred             HHHHHCCCccc--eeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVY--VEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|++++  .+++ ||++++++|++.++++.
T Consensus       329 ~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~  362 (371)
T 1f8f_A          329 VRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGI  362 (371)
T ss_dssp             HHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTS
T ss_pred             HHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCC
Confidence            99999999986  5778 99999999999988753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.93  E-value=3.3e-24  Score=162.76  Aligned_cols=168  Identities=18%  Similarity=0.179  Sum_probs=136.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       176 ~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~  254 (373)
T 2fzw_A          176 STGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLI  254 (373)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHH
Confidence            57898888888999999999999 59999999999999999 89999888776               11  45778888


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|. +.+..++++++++ |+++.+|.....    ....+++..++.++ ++.++....+.  ..+.+
T Consensus       255 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~  327 (373)
T 2fzw_A          255 EMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASG----EEIATRPFQLVTGR-TWKGTAFGGWK--SVESV  327 (373)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT----CCEEECTHHHHTTC-EEEECSGGGCC--HHHHH
T ss_pred             HHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCC----ceeeeCHHHHhcCC-EEEEeccCCCC--cHHHH
Confidence            8887799999999997 4889999999999 999999865421    11234445566677 88887654321  24568


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|+++  ++++++||++++++|++.++++.
T Consensus       328 ~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~  365 (373)
T 2fzw_A          328 PKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGK  365 (373)
T ss_dssp             HHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCC
Confidence            8899999999987  57889999999999999988763

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.93  E-value=1.1e-24  Score=166.97  Aligned_cols=163  Identities=17%  Similarity=0.176  Sum_probs=136.3

Q ss_pred             chHHHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVC-SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~-~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~   64 (180)
                      ++||+++.... ++++|++|||+|+ |++|++++|+||.+|+ +|+++++++++               +++++.+.+++
T Consensus       198 ~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~  276 (404)
T 3ip1_A          198 SVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLD  276 (404)
T ss_dssp             HHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHH
Confidence            57899986554 8999999999996 9999999999999999 89999888765               44678889999


Q ss_pred             HcCC-CccEEEeCCChh--hHHHHHHhh----ccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHH
Q 041355           65 WFPQ-GIDIYFENVGGK--MLDAVLLNM----RLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLY  137 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~--~~~~~~~~l----~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (180)
                      .+++ ++|++|||+|++  .+..++.++    +++|+++.+|....      ...++...++.+++++.|+.....    
T Consensus       277 ~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~~----  346 (404)
T 3ip1_A          277 YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA------KIPLTGEVFQVRRAQIVGSQGHSG----  346 (404)
T ss_dssp             HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCS------CEEECHHHHHHTTCEEEECCCCCS----
T ss_pred             HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCC------CCcccHHHHhccceEEEEecCCCc----
Confidence            9988 999999999987  677777888    99999999987643      235567788889999999875432    


Q ss_pred             HHHHHHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          138 LKFLELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       138 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      ...++++++++.+| ++  +.++++|+++++++|++.++.+
T Consensus       347 ~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G  386 (404)
T 3ip1_A          347 HGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD  386 (404)
T ss_dssp             TTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC
Confidence            23577899999999 65  5788999999999999998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.93  E-value=2.8e-24  Score=163.29  Aligned_cols=166  Identities=18%  Similarity=0.132  Sum_probs=136.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       181 ~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~  259 (376)
T 1e3i_A          181 SSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVIT  259 (376)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHH
Confidence            57898888888999999999999 59999999999999999 89999888776               11  45778888


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|. +.+..++++++++ |+++.+|...      ....+++..++.++ ++.++....+.  ..+.+
T Consensus       260 ~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~------~~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~  330 (376)
T 1e3i_A          260 ELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV------DEMTIPTVDVILGR-SINGTFFGGWK--SVDSV  330 (376)
T ss_dssp             HHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS------SEEEEEHHHHHTTC-EEEECSGGGCC--HHHHH
T ss_pred             HHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCC------CccccCHHHhhccC-eEEEEecCCCC--cHHHH
Confidence            8887799999999997 4889999999999 9999998732      12234556667777 88887654321  24568


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|+++  ++++++|||+++++|++.++++.
T Consensus       331 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  368 (376)
T 1e3i_A          331 PNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK  368 (376)
T ss_dssp             HHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC
Confidence            8899999999987  57889999999999999988753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.93  E-value=2.5e-24  Score=161.12  Aligned_cols=176  Identities=40%  Similarity=0.584  Sum_probs=141.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      ++||+++.+..++++|++++|+||+|++|++++|+++..|++|+++++++++               .+ +++.+.+.+.
T Consensus       131 ~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          131 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             HHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHH
Confidence            5899999888899999999999999999999999999999999999987553               23 5677777777


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCC-CccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEK-PEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      +++++|++|||+|.+.+..++++++++|+++.+|......... +....+...++.+++++.|+....+ .....+.+++
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  290 (333)
T 1v3u_A          211 SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRD  290 (333)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHH
T ss_pred             hCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHH
Confidence            7678999999999988899999999999999998765321000 1111255677889999999876443 1344677889


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|++++.+..+++++++++|++.++++.
T Consensus       291 ~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  324 (333)
T 1v3u_A          291 LMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGA  324 (333)
T ss_dssp             HHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             HHHHHHCCCccCccccccCHHHHHHHHHHHHcCC
Confidence            9999999999997767789999999999988763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.92  E-value=1e-24  Score=169.15  Aligned_cols=166  Identities=19%  Similarity=0.160  Sum_probs=136.2

Q ss_pred             chHHHHHHH--HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Ccch-------
Q 041355            2 LIVGNLIIL--VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPD-------   57 (180)
Q Consensus         2 l~a~~~l~~--~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~-------   57 (180)
                      ++||+++.+  ..++++|++|||+||+|++|++++|+|+..|++|+++++++++               .+.+       
T Consensus       204 ~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~  283 (447)
T 4a0s_A          204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIAD  283 (447)
T ss_dssp             HHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGG
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccc
Confidence            578888864  3789999999999998999999999999999999998877654               0111       


Q ss_pred             -----------HHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEE
Q 041355           58 -----------LDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLE  126 (180)
Q Consensus        58 -----------~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (180)
                                 +.+.+++.+++++|++|||+|.+.+..++.+++++|+++.+|...+     ....++...++.+++++.
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~~~i~  358 (447)
T 4a0s_A          284 DPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSG-----YLHTFDNRYLWMKLKKIV  358 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTC-----SEEEEEHHHHHHTTCEEE
T ss_pred             cccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCC-----cccccCHHHHHhCCCEEE
Confidence                       2566777774489999999999989999999999999999987543     122345567788889999


Q ss_pred             eeeccchHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          127 GFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.....     ..+.++++++.+|++++.++++|+++++++|++.++++.
T Consensus       359 g~~~~~~-----~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  404 (447)
T 4a0s_A          359 GSHGANH-----EEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSR  404 (447)
T ss_dssp             ECCSCCH-----HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred             ecCCCCH-----HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCC
Confidence            8877652     335578999999999999999999999999999988764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.92  E-value=1.7e-24  Score=163.84  Aligned_cols=167  Identities=11%  Similarity=0.065  Sum_probs=136.9

Q ss_pred             chHHHHHHHHcCCC-----CCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--------------CcchHHHH
Q 041355            2 LIVGNLIILVCSPK-----KGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--------------EEPDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~-----~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--------------~~~~~~~~   61 (180)
                      ++||+++.+..+++     +|++|||+||+|++|++++|+||.+ |++|+++++++++              ..+++.+.
T Consensus       152 ~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~  231 (363)
T 4dvj_A          152 ITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAE  231 (363)
T ss_dssp             HHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHH
T ss_pred             HHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence            58999998888988     8999999999999999999999984 8899999998765              23467777


Q ss_pred             HHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-------
Q 041355           62 LKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-------  133 (180)
Q Consensus        62 ~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  133 (180)
                      +++..++++|++|||+|++ .+..++++++++|+++.++..         ..++...+..+++++.+......       
T Consensus       232 v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~---------~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~  302 (363)
T 4dvj_A          232 VAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDP---------SAFDIMLFKRKAVSIHHELMFTRPMFGTPD  302 (363)
T ss_dssp             HHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCC---------SSCCGGGGTTTTCEEEECCTTHHHHHTCTT
T ss_pred             HHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCC---------CccchHHHhhccceEEEEEeeccccccCcc
Confidence            8877555999999999987 889999999999999998532         13455567778888888665332       


Q ss_pred             HHHHHHHHHHHHHHHHCCCccceeeeec---chhhHHHHHHHHHhhh
Q 041355          134 YHLYLKFLELVIPAIREGKMVYVEDIAE---GLEKISRNCYTLKWRV  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~l~~~~  177 (180)
                      .....+.++++.+++.+|++++.+++++   +++++++|++.++++.
T Consensus       303 ~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~  349 (363)
T 4dvj_A          303 MSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGT  349 (363)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCC
Confidence            1223567899999999999999887765   9999999999998874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.92  E-value=1.7e-24  Score=163.82  Aligned_cols=171  Identities=16%  Similarity=0.188  Sum_probs=134.9

Q ss_pred             chHHHHHHHHcCCCCC-CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC-----C--------------Cc---chH
Q 041355            2 LIVGNLIILVCSPKKG-EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE-----K--------------EE---PDL   58 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g-~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~-----~--------------~~---~~~   58 (180)
                      ++||+++.+..++++| ++|||+||+|++|++++|+||.+|++|++++++.+     .              ++   +++
T Consensus       152 ~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  231 (364)
T 1gu7_A          152 LTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF  231 (364)
T ss_dssp             HHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred             HHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHH
Confidence            5899999776789999 99999999999999999999999999999886543     1              11   455


Q ss_pred             HHHHHhHc--CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch--
Q 041355           59 DAALKRWF--PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY--  133 (180)
Q Consensus        59 ~~~~~~~~--~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  133 (180)
                      .+.+++.+  ++ ++|++|||+|++....++++++++|+++.+|.....     ...++...++.+++++.++....+  
T Consensus       232 ~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~  306 (364)
T 1gu7_A          232 GPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQ-----PVTIPTSLYIFKNFTSAGFWVTELLK  306 (364)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSC-----CEEECHHHHHHSCCEEEECCHHHHHT
T ss_pred             HHHHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCC-----CcccCHHHHhhcCcEEEEEchhHhcc
Confidence            66777777  44 899999999988666889999999999999865421     223455567789999998876432  


Q ss_pred             --HHHHHHHHHHHHHHHHCCCccceeeeecch---hhHHHHHHHHHhhh
Q 041355          134 --YHLYLKFLELVIPAIREGKMVYVEDIAEGL---EKISRNCYTLKWRV  177 (180)
Q Consensus       134 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~a~~~l~~~~  177 (180)
                        +....+.++++++++.+|++++.+..++++   +++++|++.++++.
T Consensus       307 ~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~  355 (364)
T 1gu7_A          307 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANS  355 (364)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTG
T ss_pred             cCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCC
Confidence              222356789999999999999865566665   59999999987763

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=1.4e-24  Score=164.00  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=133.6

Q ss_pred             chHHHHHHHH-cCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC---------------CcchHHHHHHh
Q 041355            2 LIVGNLIILV-CSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK---------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~-~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~---------------~~~~~~~~~~~   64 (180)
                      +|||+++.+. .++++|++|||+|+ |++|++++|+||.+ |++|+++++++++               +++ +.+.+++
T Consensus       171 ~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~v~~  248 (359)
T 1h2b_A          171 ITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRD-PVKQVME  248 (359)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSC-HHHHHHH
T ss_pred             HHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccch-HHHHHHH
Confidence            4689999665 89999999999997 99999999999999 9999999988665               233 6677888


Q ss_pred             HcCC-CccEEEeCCChh---hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGK---MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~---~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+++ ++|++|||+|++   .+..++++  ++|+++.+|....     .  .+++..++.+++++.++....     .+.
T Consensus       249 ~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~-----~--~~~~~~~~~~~~~i~g~~~~~-----~~~  314 (359)
T 1h2b_A          249 LTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGE-----L--RFPTIRVISSEVSFEGSLVGN-----YVE  314 (359)
T ss_dssp             HTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSC-----C--CCCHHHHHHTTCEEEECCSCC-----HHH
T ss_pred             HhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCC-----C--CCCHHHHHhCCcEEEEecCCC-----HHH
Confidence            8877 899999999987   67777766  9999999987542     1  455667788999999987644     356


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++++.+|++++.+ ++|+++++++|++.++++.
T Consensus       315 ~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~  350 (359)
T 1h2b_A          315 LHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGE  350 (359)
T ss_dssp             HHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHHcCC
Confidence            88899999999999988 9999999999999998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=4.9e-24  Score=161.87  Aligned_cols=167  Identities=17%  Similarity=0.121  Sum_probs=136.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       178 ~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  256 (374)
T 1cdo_A          178 STGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLS  256 (374)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHH
Confidence            57888888888999999999999 59999999999999999 89999888776               11  35777888


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|. +.+..++++++++ |+++.+|....     ....+++..++.++ ++.++....+.  ..+.+
T Consensus       257 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~-----~~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~  328 (374)
T 1cdo_A          257 KMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-----HDVATRPIQLIAGR-TWKGSMFGGFK--GKDGV  328 (374)
T ss_dssp             HHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS-----SCEEECHHHHHTTC-EEEECSGGGCC--HHHHH
T ss_pred             HHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCC-----CCcccCHHHHhcCC-eEEEEecCCCC--cHHHH
Confidence            8877799999999997 4889999999999 99999987542     12234555666677 88887654321  24568


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|+++  ++++++||++++++|++.++++.
T Consensus       329 ~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~  366 (374)
T 1cdo_A          329 PKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGK  366 (374)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCC
Confidence            8899999999987  57889999999999999988763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.92  E-value=6.2e-24  Score=161.32  Aligned_cols=168  Identities=18%  Similarity=0.170  Sum_probs=136.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc--chHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE--PDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~--~~~~~~~~   63 (180)
                      ++||+++.+..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               .+  +++.+.++
T Consensus       177 ~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  255 (374)
T 2jhf_A          177 STGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLT  255 (374)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHH
Confidence            57899988888999999999999 69999999999999999 89999888776               11  35777888


Q ss_pred             hHcCCCccEEEeCCCh-hhHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGG-KMLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++++|++|||+|. +.+..++++++++ |+++.+|.....    ....+++..++.++ ++.++....+.  ..+.+
T Consensus       256 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~~~~~~--~~~~~  328 (374)
T 2jhf_A          256 EMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS----QNLSMNPMLLLSGR-TWKGAIFGGFK--SKDSV  328 (374)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTT----CCEEECTHHHHTTC-EEEECSGGGCC--HHHHH
T ss_pred             HHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCC----CccccCHHHHhcCC-eEEEeccCCCC--hHHHH
Confidence            8887799999999997 4889999999999 999999865421    12234445666677 88887654321  24568


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++.+|+++  ++++++||++++++|++.++++.
T Consensus       329 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  366 (374)
T 2jhf_A          329 PKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGE  366 (374)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCC
Confidence            8899999999987  57889999999999999988753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.92  E-value=1.6e-24  Score=163.37  Aligned_cols=168  Identities=13%  Similarity=0.018  Sum_probs=135.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               +++++.+.+++.
T Consensus       153 ~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          153 TTGFHGA-ELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHH
Confidence            5899998 889999999999999 69999999999999999 89999887764               356788899999


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|++|||+|++ .+..++++++++|+++.+|.......  ............+++++.+......    +..+++
T Consensus       231 t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~--~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~  304 (352)
T 3fpc_A          231 TDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDN--IDIPRSEWGVGMGHKHIHGGLCPGG----RLRMER  304 (352)
T ss_dssp             TTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSE--EEEETTTTGGGTBCEEEEEBCCCCH----HHHHHH
T ss_pred             cCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCc--eecchhHhhhhccccEEEEeeccCc----hhHHHH
Confidence            988 899999999984 89999999999999999987543110  0011111223456778888765432    455888


Q ss_pred             HHHHHHCCCccc--eeeeecc-hhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVY--VEDIAEG-LEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~--~~~~~~~-~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|++++  +++++|+ ++++++|++.++++.
T Consensus       305 ~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~  341 (352)
T 3fpc_A          305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKP  341 (352)
T ss_dssp             HHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCC
T ss_pred             HHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCC
Confidence            999999999987  5889999 999999999998753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.92  E-value=2e-25  Score=166.52  Aligned_cols=169  Identities=15%  Similarity=0.126  Sum_probs=132.8

Q ss_pred             chHHHHHH--HHcCCCCCC-EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhH
Q 041355            2 LIVGNLII--LVCSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~--~~~~~~~g~-~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~   65 (180)
                      +|||+++.  ...++++++ +|||+||+|++|++++|+||.+|++|+++++++++             +..+... +++.
T Consensus       129 ~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~-~~~~  207 (324)
T 3nx4_A          129 FTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAE-SRPL  207 (324)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSC-CCSS
T ss_pred             HHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHH-HHhh
Confidence            57888875  345566633 49999999999999999999999999999988765             0011001 3333


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      +++++|++|||+|++.+..++++++++|+++.+|.....     ....+...++.+++++.++..... .....+.++.+
T Consensus       208 ~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  282 (324)
T 3nx4_A          208 EKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF-----ALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARL  282 (324)
T ss_dssp             CCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS-----EEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCCccEEEECCCcHHHHHHHHHHhcCCEEEEEecCCCC-----CCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHH
Confidence            445899999999999999999999999999999876431     223455677889999999875433 34456778899


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++.+|++++. +++|+++++++|++.++++.
T Consensus       283 ~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~  314 (324)
T 3nx4_A          283 VKDLPESFYAQA-ATEITLADAPKFADAIINNQ  314 (324)
T ss_dssp             HHHSCHHHHHHH-EEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCC-ceeEeHHHHHHHHHHHHhCC
Confidence            999999999998 89999999999999998874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.92  E-value=6.9e-24  Score=160.88  Aligned_cols=175  Identities=11%  Similarity=0.152  Sum_probs=134.3

Q ss_pred             chHHHHHHHH-cCC-----------CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------C
Q 041355            2 LIVGNLIILV-CSP-----------KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------E   54 (180)
Q Consensus         2 l~a~~~l~~~-~~~-----------~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~   54 (180)
                      ++||+++.+. .++           ++|++|||+||+|++|++++|+||.+|++|+++++ +++               +
T Consensus       138 ~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~-~~~~~~~~~lGa~~vi~~~  216 (371)
T 3gqv_A          138 STAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-PHNFDLAKSRGAEEVFDYR  216 (371)
T ss_dssp             HHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-HHHHHHHHHcCCcEEEECC
Confidence            5789999777 553           89999999998899999999999999999999874 444               4


Q ss_pred             cchHHHHHHhHcCCCccEEEeCCChh-hHHHHHHhh-ccCCEEEEEeccccccCCCC---ccccchHHHhhcCcEEEeee
Q 041355           55 EPDLDAALKRWFPQGIDIYFENVGGK-MLDAVLLNM-RLRGRIAVSSIISQYNLEKP---EGVHNLEQLIGKRIRLEGFL  129 (180)
Q Consensus        55 ~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l-~~~G~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  129 (180)
                      ++++.+.+++.+++++|++|||+|+. .+..++.++ +++|+++.+|..........   ........++.+++++.++.
T Consensus       217 ~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~  296 (371)
T 3gqv_A          217 APNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPY  296 (371)
T ss_dssp             STTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTT
T ss_pred             CchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccc
Confidence            56788899999988899999999985 788999999 59999999986443110000   01111235677888887765


Q ss_pred             ccch----HHHHHHHHHHHHHHHHCCCccce--eeeecchhhHHHHHHHHHhhh
Q 041355          130 AGDY----YHLYLKFLELVIPAIREGKMVYV--EDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       130 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ....    .....++++++.+++.+|++++.  +++.++++++++|++.++++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~  350 (371)
T 3gqv_A          297 GRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGE  350 (371)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCC
Confidence            4322    22345567789999999999985  455699999999999998874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.92  E-value=8.5e-25  Score=161.64  Aligned_cols=163  Identities=22%  Similarity=0.187  Sum_probs=128.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      ++||+++.+.. +++|++|+|+|++|++|++++|+++.+|++|+++++++++               .+ +++.+.+   
T Consensus       112 ~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~---  187 (302)
T 1iz0_A          112 LTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW---  187 (302)
T ss_dssp             HHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT---
T ss_pred             HHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh---
Confidence            58999997777 9999999999999999999999999999999999997765               11 2222222   


Q ss_pred             cCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                        +++|++|| +|++.+..++++++++|+++.+|.....     ...+++..++.+++++.++....+ ....+.+++++
T Consensus       188 --~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~  258 (302)
T 1iz0_A          188 --GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGE-----VAPIPPLRLMRRNLAVLGFWLTPL-LREGALVEEAL  258 (302)
T ss_dssp             --TSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHH-TTCHHHHHHHH
T ss_pred             --cCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCCC-----CCCcCHHHHHhCCCeEEEEeccch-hhhHHHHHHHH
Confidence              57999999 9988899999999999999999875431     113445567788999998876432 11245677888


Q ss_pred             H---HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 P---AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~---~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +   ++.+|++++.++++|+++++++|++.++++.
T Consensus       259 ~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  293 (302)
T 1iz0_A          259 GFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRG  293 (302)
T ss_dssp             HHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTT
T ss_pred             hhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCC
Confidence            8   9999999999999999999999999987753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.92  E-value=4.2e-24  Score=160.76  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=137.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +|||+++ +..++++|++|+|+|++|++|++++|+++.. |++|+++++++++               .++++.+.+.+.
T Consensus       157 ~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          157 ITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRI  235 (347)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHH
Confidence            4789999 5589999999999998889999999999999 9999999987654               334566667777


Q ss_pred             cC-CCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FP-QGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~-~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +. +++|++|||+|.. .+..++++++++|+++.+|....     .. .+++..++.+++++.++....     .+.+++
T Consensus       236 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~-~~~~~~~~~~~~~i~g~~~~~-----~~~~~~  304 (347)
T 1jvb_A          236 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA-----DL-HYHAPLITLSEIQFVGSLVGN-----QSDFLG  304 (347)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC-----CC-CCCHHHHHHHTCEEEECCSCC-----HHHHHH
T ss_pred             hcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCC-----CC-CCCHHHHHhCceEEEEEeccC-----HHHHHH
Confidence            76 5899999999987 88889999999999999987541     11 455567788899999887654     356888


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++.+|++++.++++||++++++|++.++++.
T Consensus       305 ~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  338 (347)
T 1jvb_A          305 IMRLAEAGKVKPMITKTMKLEEANEAIDNLENFK  338 (347)
T ss_dssp             HHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999998764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.92  E-value=5.6e-24  Score=160.59  Aligned_cols=161  Identities=16%  Similarity=0.109  Sum_probs=133.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------C---cchHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------E---EPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~---~~~~~~~~   62 (180)
                      .+||+++ +..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++               +   .+++.+.+
T Consensus       158 ~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i  235 (356)
T 1pl8_A          158 SVGIHAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKV  235 (356)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHH
Confidence            5789999 788999999999999 59999999999999999 99999988765               2   24566777


Q ss_pred             HhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           63 KRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++.+++++|++|||+|.+ .+..++++++++|+++.+|....      ...+++..++.+++++.++....      ..+
T Consensus       236 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~------~~~  303 (356)
T 1pl8_A          236 EGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE------MTTVPLLHAAIREVDIKGVFRYC------NTW  303 (356)
T ss_dssp             HHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS------CCCCCHHHHHHTTCEEEECCSCS------SCH
T ss_pred             HHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCC------CCccCHHHHHhcceEEEEecccH------HHH
Confidence            777766899999999976 78899999999999999986321      23455667888999998876532      347


Q ss_pred             HHHHHHHHCCCcc--ceeeeecchhhHHHHHHHHHhh
Q 041355          142 ELVIPAIREGKMV--YVEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       142 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++++++.+|+++  +.++++||++++++|++.++++
T Consensus       304 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  340 (356)
T 1pl8_A          304 PVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG  340 (356)
T ss_dssp             HHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC
Confidence            7899999999864  6788999999999999998876

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.92  E-value=3.8e-24  Score=160.86  Aligned_cols=171  Identities=14%  Similarity=0.064  Sum_probs=134.4

Q ss_pred             hHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            3 IVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         3 ~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++++...+..++++|++|+|+| +|++|++++|+||++|++ ++++++++++               ++.+..+.++..+
T Consensus       147 ~~~~~~~~~~~~~~g~~VlV~G-aG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~  225 (346)
T 4a2c_A          147 TVGLHAFHLAQGCENKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR  225 (346)
T ss_dssp             HHHHHHHHHTTCCTTSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHG
T ss_pred             HHHHHHHHHhccCCCCEEEEEC-CCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhc
Confidence            4455555888999999999999 599999999999999995 5666666654               4456777777777


Q ss_pred             CC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++ ++|+++||+|.+ .++.++++++++|+++.+|.....   ......+...++.+++++.|+..........+.++++
T Consensus       226 ~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~  302 (346)
T 4a2c_A          226 ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQD---LHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETA  302 (346)
T ss_dssp             GGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSC---EEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHH
T ss_pred             ccCCcccccccccccchhhhhhheecCCeEEEEEeccCCC---ccccccCHHHHhhceeEEEEEeccccCcchHHHHHHH
Confidence            76 899999999966 889999999999999999876532   1112334456788999999987643322224568889


Q ss_pred             HHHHHCCCcc--ceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMV--YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~--~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+++++|+++  |+++++|||+++++|++.++++.
T Consensus       303 ~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~  337 (346)
T 4a2c_A          303 SRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNA  337 (346)
T ss_dssp             HHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCC
Confidence            9999999874  67899999999999999998764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.92  E-value=1.8e-24  Score=161.21  Aligned_cols=158  Identities=23%  Similarity=0.197  Sum_probs=126.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------Ccch-HHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPD-LDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~-~~~~~~~~~   66 (180)
                      ++||+++ +..++++|++|+|+||+|++|++++|+||.+|++|++++++++.              ++++ +.+.+    
T Consensus       139 ~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~----  213 (321)
T 3tqh_A          139 LTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS----  213 (321)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC----
T ss_pred             HHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc----
Confidence            5899999 88999999999999999999999999999999999998864322              1111 21111    


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                       .++|++|||+|++.+..++++++++|+++.++....        .........+++++.++.....    .+.++++++
T Consensus       214 -~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  280 (321)
T 3tqh_A          214 -TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITA--------GRVIEVAKQKHRRAFGLLKQFN----IEELHYLGK  280 (321)
T ss_dssp             -SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTH--------HHHHHHHHHTTCEEECCCCCCC----HHHHHHHHH
T ss_pred             -cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCc--------hhhhhhhhhcceEEEEEecCCC----HHHHHHHHH
Confidence             379999999999977899999999999999865331        1122345677888887544332    456889999


Q ss_pred             HHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          147 AIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       147 ~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++.+|++++.++++|+++++++|++.++++.
T Consensus       281 l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  311 (321)
T 3tqh_A          281 LVSEDKLRIEISRIFQLSEAVTAHELLETGH  311 (321)
T ss_dssp             HHHTTSSCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             HHHCCCcccccccEEcHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.92  E-value=9.6e-24  Score=158.79  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=138.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +|||+++ +..++++|++|+|+| +|++|.+++|+++.+ |++|+++++++++               .++++.+.+++.
T Consensus       150 ~ta~~~l-~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~  227 (348)
T 4eez_A          150 VTTYKAI-KVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKI  227 (348)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHH
T ss_pred             eeEEeee-cccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhh
Confidence            5788888 678899999999999 699999999999876 6699999998875               456888999999


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +++ ++|.++||+++. .+..++.+++++|+++.++....      ....+...++.+++++.|+....     +..+++
T Consensus       228 t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~gs~~~~-----~~~~~~  296 (348)
T 4eez_A          228 TGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNT------EMTLSVPTVVFDGVEVAGSLVGT-----RLDLAE  296 (348)
T ss_dssp             TTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSC------EEEECHHHHHHSCCEEEECCSCC-----HHHHHH
T ss_pred             cCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCC------CCccCHHHHHhCCeEEEEEecCC-----HHHHHH
Confidence            988 999999998866 88999999999999999986542      23456678889999999988765     345788


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++++|+++|.+ ++|||+++++|++.++++.
T Consensus       297 ~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g~  329 (348)
T 4eez_A          297 AFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAGK  329 (348)
T ss_dssp             HHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCCC
Confidence            89999999999876 6899999999999999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.92  E-value=8e-24  Score=158.83  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=135.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++ +..++++|++|||+| +|++|++++|+||.+|++|+++++++++               +++++.+.+++ +
T Consensus       153 ~ta~~~l-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~-~  229 (340)
T 3s2e_A          153 VTVYKGL-KVTDTRPGQWVVISG-IGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQK-E  229 (340)
T ss_dssp             HHHHHHH-HTTTCCTTSEEEEEC-CSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHH-H
T ss_pred             HHHHHHH-HHcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHH-h
Confidence            5789999 778999999999999 5999999999999999999999988765               34577777777 4


Q ss_pred             CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .+++|++|||+|.. .+..++++++++|+++.+|....      ....+...++.+++++.++....     .+.+++++
T Consensus       230 ~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  298 (340)
T 3s2e_A          230 IGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPG------DFGTPIFDVVLKGITIRGSIVGT-----RSDLQESL  298 (340)
T ss_dssp             HSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSS------EEEEEHHHHHHTTCEEEECCSCC-----HHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCC------CCCCCHHHHHhCCeEEEEEecCC-----HHHHHHHH
Confidence            45899999999854 88999999999999999987542      23445667888999999988765     45688899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++++|++++.+ ++++++++++|++.++++.
T Consensus       299 ~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  329 (340)
T 3s2e_A          299 DFAAHGDVKATV-STAKLDDVNDVFGRLREGK  329 (340)
T ss_dssp             HHHHTTSCCCCE-EEECGGGHHHHHHHHHTTC
T ss_pred             HHHHhCCCCceE-EEEeHHHHHHHHHHHHcCC
Confidence            999999999875 5679999999999998875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.91  E-value=2.2e-24  Score=164.97  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=135.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchH-HHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDL-DAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~-~~~~~~~   65 (180)
                      ++||+++ +..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++              .++++ .+.+++.
T Consensus       172 ~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~  249 (398)
T 2dph_A          172 PTGFHGC-VSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQI  249 (398)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHH
Confidence            5899999 788999999999999 59999999999999999 99999988765              23444 7778888


Q ss_pred             cCC-CccEEEeCCChh---------------hHHHHHHhhccCCEEEEEeccccccCC-------CCccccchHHHhhcC
Q 041355           66 FPQ-GIDIYFENVGGK---------------MLDAVLLNMRLRGRIAVSSIISQYNLE-------KPEGVHNLEQLIGKR  122 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~---------------~~~~~~~~l~~~G~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~  122 (180)
                      +++ ++|++|||+|++               .+..++++++++|+++.+|........       .....+++..++.++
T Consensus       250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  329 (398)
T 2dph_A          250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKS  329 (398)
T ss_dssp             HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTT
T ss_pred             hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcC
Confidence            877 899999999975               588999999999999999875211000       011234556678889


Q ss_pred             cEEEeeeccchHHHHHHHHHHHHHHHHCCCcc--c--eeeeecchhhHHHHHHHHHhh
Q 041355          123 IRLEGFLAGDYYHLYLKFLELVIPAIREGKMV--Y--VEDIAEGLEKISRNCYTLKWR  176 (180)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~~~~~~~a~~~l~~~  176 (180)
                      +++.+.....     .+.++++++++.+|+++  +  +++++|+|+++++|++.++++
T Consensus       330 ~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~  382 (398)
T 2dph_A          330 IRIMTGMAPV-----TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKG  382 (398)
T ss_dssp             CEEECSSCCG-----GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTT
T ss_pred             CEEEEeccCc-----HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcC
Confidence            9988765432     34577899999999999  6  678999999999999998775

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=1.7e-23  Score=160.12  Aligned_cols=169  Identities=16%  Similarity=0.154  Sum_probs=133.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~-~~~~~~~~~~   65 (180)
                      +|||+++ +..++++|++|||+| +|++|++++|+||.+|+ +|+++++++++              .+ .++.+.+++.
T Consensus       172 ~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          172 PTGYHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHH
Confidence            5899999 578999999999999 69999999999999999 79999887765              22 2377888888


Q ss_pred             cCC-CccEEEeCCChh----------------hHHHHHHhhccCCEEEEEeccccccCCC-------CccccchHHHhhc
Q 041355           66 FPQ-GIDIYFENVGGK----------------MLDAVLLNMRLRGRIAVSSIISQYNLEK-------PEGVHNLEQLIGK  121 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~----------------~~~~~~~~l~~~G~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~  121 (180)
                      +++ ++|++|||+|++                .+..++++++++|+++.+|.........       ....+++..++.+
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAK  329 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHT
T ss_pred             hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhc
Confidence            877 899999999975                6889999999999999998652110000       0123455567778


Q ss_pred             CcEEEeeeccchHHHHHHHHHHHHHHHHCCCcc---ceeeeecchhhHHHHHHHHHhhh
Q 041355          122 RIRLEGFLAGDYYHLYLKFLELVIPAIREGKMV---YVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+....     ..+.++++++++.+|+++   ++++++|+++++++|++.++++.
T Consensus       330 ~~~~~g~~~~-----~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~  383 (398)
T 1kol_A          330 SHSFHTGQTP-----VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGV  383 (398)
T ss_dssp             TCEEEESSCC-----HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTC
T ss_pred             ccEEEecccC-----hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCC
Confidence            8888875432     245577899999999998   56789999999999999988763

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.91  E-value=4.2e-24  Score=160.51  Aligned_cols=164  Identities=15%  Similarity=0.151  Sum_probs=134.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      .+||+++.+..++ +|++|||+|+ |++|++++|+||.+|+ +|+++++++++              .++++.+.+++.+
T Consensus       151 ~ta~~~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~  228 (343)
T 2dq4_A          151 GNAVHTVYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVT  228 (343)
T ss_dssp             HHHHHHHHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhc
Confidence            4789999548889 9999999998 9999999999999999 99999987543              2346777788777


Q ss_pred             CCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        67 ~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++++|++|||+|. +.+..++++++++|+++.+|....      ...+++ ..++.+++++.|+.....    .+.++++
T Consensus       229 ~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~  298 (343)
T 2dq4_A          229 GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSD------PIRFDLAGELVMRGITAFGIAGRRL----WQTWMQG  298 (343)
T ss_dssp             SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS------CEEECHHHHTGGGTCEEEECCSCCT----THHHHHH
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CceeCcHHHHHhCceEEEEeecCCC----HHHHHHH
Confidence            4489999999998 588999999999999999987431      224555 567888999998865421    3457889


Q ss_pred             HHHHHCCC--ccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGK--MVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~--~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|+  +++.++++||++++++|++.++++.
T Consensus       299 ~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~  333 (343)
T 2dq4_A          299 TALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQ  333 (343)
T ss_dssp             HHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSS
T ss_pred             HHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCC
Confidence            99999999  5678889999999999999988753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=9.9e-24  Score=159.02  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=133.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Cc-chHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EE-PDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~-~~~~~~~~~~   65 (180)
                      .+||+++ +..++++|++|||+|+ |++|++++|+||.+|++|+++++++++               ++ +++.+.+++.
T Consensus       155 ~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~  232 (352)
T 1e3j_A          155 SVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIER  232 (352)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHH
Confidence            4789999 7889999999999995 999999999999999999999887664               22 5666777777


Q ss_pred             cC---C-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           66 FP---Q-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        66 ~~---~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ++   + ++|++|||+|.. .+..++++++++|+++.+|....      ...++...++.+++++.++....      ..
T Consensus       233 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~------~~  300 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ------MVTVPLVNACAREIDIKSVFRYC------ND  300 (352)
T ss_dssp             HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSS------CCCCCHHHHHTTTCEEEECCSCS------SC
T ss_pred             hccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CccccHHHHHhcCcEEEEeccch------HH
Confidence            65   4 899999999976 78899999999999999986331      22355667888999998876532      34


Q ss_pred             HHHHHHHHHCCCc--cceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKM--VYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~--~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++++.+|++  ++.++++||++++++|++.++++.
T Consensus       301 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  339 (352)
T 1e3j_A          301 YPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKA  339 (352)
T ss_dssp             HHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCC
Confidence            7788999999986  467889999999999999988763

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.91  E-value=8.7e-24  Score=158.87  Aligned_cols=162  Identities=18%  Similarity=0.122  Sum_probs=118.8

Q ss_pred             chHHHHHHHH----cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC--------Cc--chH---HHHH
Q 041355            2 LIVGNLIILV----CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK--------EE--PDL---DAAL   62 (180)
Q Consensus         2 l~a~~~l~~~----~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~--------~~--~~~---~~~~   62 (180)
                      +|||+++.+.    .++ +|++|||+|+ |++|++++|+||.+  |++|+++++++++        .+  -+.   .+.+
T Consensus       153 ~ta~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  230 (344)
T 2h6e_A          153 TTSMGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLI  230 (344)
T ss_dssp             HHHHHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHH
Confidence            5789999654    288 9999999997 99999999999999  9999999987665        00  011   2234


Q ss_pred             HhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+++ ++|++|||+|.+ .+..++++++++|+++.+|....      ...++...++.+++++.++....     .+.
T Consensus       231 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~  299 (344)
T 2h6e_A          231 NKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGK------RVSLEAFDTAVWNKKLLGSNYGS-----LND  299 (344)
T ss_dssp             HHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHHHTTCEEEECCSCC-----HHH
T ss_pred             HHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCC------CcccCHHHHhhCCcEEEEEecCC-----HHH
Confidence            445555 899999999987 89999999999999999987542      12455667788999999887644     356


Q ss_pred             HHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          141 LELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++++++.+|++++.+ ++||++++++|++.++++.
T Consensus       300 ~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~  335 (344)
T 2h6e_A          300 LEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGR  335 (344)
T ss_dssp             HHHHHHHHHTTSSCCCE-EEECC--------------
T ss_pred             HHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHHcCC
Confidence            88899999999999988 9999999999999988764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.91  E-value=8.4e-24  Score=159.17  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=135.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      .+||+++ +..++ +|++|||+|+ |++|++++|+||.+|+ +|+++++++++               +++++.+.+++.
T Consensus       155 ~ta~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~  231 (348)
T 2d8a_A          155 GNAVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDI  231 (348)
T ss_dssp             HHHHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHH
T ss_pred             HHHHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHH
Confidence            4789999 77889 9999999997 9999999999999999 99999988664               345677888888


Q ss_pred             cCC-CccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +++ ++|++|||+|. +.+..++++++++|+++.++....      ...+++ ..++.+++++.++.....    .+.++
T Consensus       232 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~  301 (348)
T 2d8a_A          232 TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG------KVTIDFNNLIIFKALTIYGITGRHL----WETWY  301 (348)
T ss_dssp             TTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHTTTTTCEEEECCCCCS----HHHHH
T ss_pred             cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CcccCchHHHHhCCcEEEEecCCCc----HHHHH
Confidence            877 89999999997 588899999999999999987542      224455 567788999998765431    34578


Q ss_pred             HHHHHHHCCCc--cceeeeecc-hhhHHHHHHHHHhh
Q 041355          143 LVIPAIREGKM--VYVEDIAEG-LEKISRNCYTLKWR  176 (180)
Q Consensus       143 ~~~~~~~~g~~--~~~~~~~~~-~~~~~~a~~~l~~~  176 (180)
                      ++++++.+|++  ++.++++|| ++++++|++.++++
T Consensus       302 ~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~  338 (348)
T 2d8a_A          302 TVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAG  338 (348)
T ss_dssp             HHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCC
Confidence            89999999985  678889999 99999999998763

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.91  E-value=2.5e-23  Score=156.11  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=133.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+ .++++|++|+|+|+ |++|++++|+++.+|++|+++++++++               .++++.+.+++.+
T Consensus       151 ~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          151 VTTYKALKV-TGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             HHHHHHHHH-HTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh
Confidence            578999955 48999999999997 889999999999999999999987654               2346667777766


Q ss_pred             CCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                       +++|++|||+|. ..+..++++++++|+++.+|....      ...+++..++.+++++.++....     .+.+++++
T Consensus       229 -~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  296 (339)
T 1rjw_A          229 -GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE------EMPIPIFDTVLNGIKIIGSIVGT-----RKDLQEAL  296 (339)
T ss_dssp             -SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSCC-----HHHHHHHH
T ss_pred             -CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCC------CCccCHHHHHhCCcEEEEeccCC-----HHHHHHHH
Confidence             689999999997 588899999999999999987542      12455567778999999877644     34578899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.+ ++||++++++|++.++++.
T Consensus       297 ~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  327 (339)
T 1rjw_A          297 QFAAEGKVKTII-EVQPLEKINEVFDRMLKGQ  327 (339)
T ss_dssp             HHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHcCCCCccE-EEEcHHHHHHHHHHHHcCC
Confidence            999999999874 7899999999999988763

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.91  E-value=5.6e-24  Score=158.12  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=113.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH--------HhHcCCCccEE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL--------KRWFPQGIDIY   73 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~   73 (180)
                      ++||+++ +..++++|++|||+|+ |++|++++|+||.+|++|++++ ++++  .++...+        .+..++++|++
T Consensus       129 ~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~--~~~~~~lGa~~v~~d~~~v~~g~Dvv  203 (315)
T 3goh_A          129 LTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLS--QALAAKRGVRHLYREPSQVTQKYFAI  203 (315)
T ss_dssp             HHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCC--HHHHHHHTEEEEESSGGGCCSCEEEE
T ss_pred             HHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-Chhh--HHHHHHcCCCEEEcCHHHhCCCccEE
Confidence            6899999 8899999999999998 9999999999999999999999 6554  1111111        11114589999


Q ss_pred             EeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-----HH---HHHHHHHHHH
Q 041355           74 FENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-----YH---LYLKFLELVI  145 (180)
Q Consensus        74 ~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~  145 (180)
                      |||+|++.+..++++++++|+++.++.....         .....+.+.+.+....+...     +.   ...+.+++++
T Consensus       204 ~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (315)
T 3goh_A          204 FDAVNSQNAAALVPSLKANGHIICIQDRIPA---------PIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALL  274 (315)
T ss_dssp             ECC-------TTGGGEEEEEEEEEECCC-------------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHH
T ss_pred             EECCCchhHHHHHHHhcCCCEEEEEeCCCCc---------cccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHH
Confidence            9999998778889999999999999653210         11122334555555554322     11   3345688999


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHH
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLK  174 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~  174 (180)
                      +++.+|++++.++++||++++++|++.++
T Consensus       275 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~  303 (315)
T 3goh_A          275 TLIAQGKMEIAAPDIFRFEQMIEALDHSE  303 (315)
T ss_dssp             HHHHTTSSCCCCCEEEEGGGHHHHHHHHH
T ss_pred             HHHHCCCcccccceEecHHHHHHHHHHHH
Confidence            99999999999999999999999999887

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.91  E-value=1e-24  Score=163.12  Aligned_cols=171  Identities=19%  Similarity=0.194  Sum_probs=130.6

Q ss_pred             chHHHHHH--HHcCCCCCC-EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc--chHHHH----HHh
Q 041355            2 LIVGNLII--LVCSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE--PDLDAA----LKR   64 (180)
Q Consensus         2 l~a~~~l~--~~~~~~~g~-~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~--~~~~~~----~~~   64 (180)
                      ++||+++.  +..++++|+ +|||+||+|++|++++|+||.+|++|+++++++++        .+  -+..+.    +++
T Consensus       133 ~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~  212 (330)
T 1tt7_A          133 FTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKA  212 (330)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCS
T ss_pred             HHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHH
Confidence            46777764  346789997 99999999999999999999999999999998776        00  011111    122


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      .+++++|++|||+|++.+..++++++++|+++.+|...+.     ....+...++.+++++.|++.... .....+.++.
T Consensus       213 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  287 (330)
T 1tt7_A          213 LSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGG-----EVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWER  287 (330)
T ss_dssp             SCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCS-----CEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhcCCccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCCC-----ccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHH
Confidence            2334899999999998899999999999999999875421     123344567789999999853222 2234556778


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++.+|++++.++++||++++++|++.++++.
T Consensus       288 ~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  321 (330)
T 1tt7_A          288 MSSDLKPDQLLTIVDREVSLEETPGALKDILQNR  321 (330)
T ss_dssp             TTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTC
T ss_pred             HHHHHhcCCcccccceEEcHHHHHHHHHHHHcCC
Confidence            8888899999999999999999999999987763

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=1.3e-23  Score=156.94  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=126.7

Q ss_pred             chHHHHHH--HHcCCCCCC-EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchH-HHHHHh
Q 041355            2 LIVGNLII--LVCSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDL-DAALKR   64 (180)
Q Consensus         2 l~a~~~l~--~~~~~~~g~-~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~-~~~~~~   64 (180)
                      ++||+++.  +..++++|+ +|+|+||+|++|++++|+||.+|++|+++++++++             +..+. .+.+++
T Consensus       132 ~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~  211 (328)
T 1xa0_A          132 FTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRP  211 (328)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------
T ss_pred             HHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHH
Confidence            46777764  446789997 99999999999999999999999999999998776             11111 223444


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      .+++++|++|||+|++.+..++++++++|+++.+|...+.     ....++..++.+++++.|+..... .....+.++.
T Consensus       212 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  286 (328)
T 1xa0_A          212 LDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWER  286 (328)
T ss_dssp             CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSS-----CCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHH
T ss_pred             hcCCcccEEEECCcHHHHHHHHHhhccCCEEEEEeecCCC-----CCCCchhhhhhcCceEEEEecccCCHHHHHHHHHH
Confidence            4445899999999998999999999999999999875421     123344567788999998753221 2234456778


Q ss_pred             HHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          144 VIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +.+++.+| +++. +++|+++++++|++.++++.
T Consensus       287 ~~~~~~~g-l~~~-~~~~~l~~~~~A~~~~~~~~  318 (328)
T 1xa0_A          287 LAGDLKPD-LERI-AQEISLAELPQALKRILRGE  318 (328)
T ss_dssp             HHTTTCCC-HHHH-EEEEEGGGHHHHHHHHHHTC
T ss_pred             HHHHHHcC-Ccee-eeEeCHHHHHHHHHHHHcCC
Confidence            88888888 8875 68999999999999998763

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.6e-23  Score=155.11  Aligned_cols=164  Identities=18%  Similarity=0.199  Sum_probs=135.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------C-cchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------E-EPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~-~~~~~~~~~~~   65 (180)
                      ++||+++. ..++++|++|||+|++|++|++++|+++..|++|+++++++++               . ++++.+.+++.
T Consensus       156 ~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  234 (347)
T 2hcy_A          156 ITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKA  234 (347)
T ss_dssp             HHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHH
Confidence            47899994 4589999999999999999999999999999999999987664               1 35677777777


Q ss_pred             cCCCccEEEeCCCh-hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGG-KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +.+++|++||++|. ..+..++++++++|+++.++...+     ....+++..++.+++++.++....     .+.++++
T Consensus       235 ~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~  304 (347)
T 2hcy_A          235 TDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAG-----AKCCSDVFNQVVKSISIVGSYVGN-----RADTREA  304 (347)
T ss_dssp             HTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTT-----CEEEEEHHHHHHTTCEEEECCCCC-----HHHHHHH
T ss_pred             hCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCC-----CCCCCCHHHHhhCCcEEEEccCCC-----HHHHHHH
Confidence            66689999999997 588889999999999999987542     122455667788999999887644     3457889


Q ss_pred             HHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          145 IPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+|++++.+ ++||++++++|++.++++.
T Consensus       305 ~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  336 (347)
T 2hcy_A          305 LDFFARGLVKSPI-KVVGLSTLPEIYEKMEKGQ  336 (347)
T ss_dssp             HHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHHhCCCccce-EEEcHHHHHHHHHHHHcCC
Confidence            9999999999864 6899999999999988763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=4.1e-23  Score=156.52  Aligned_cols=159  Identities=16%  Similarity=0.169  Sum_probs=125.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+ .++++|++|||+|+ |++|++++|+||.+|++|+++++++++               .+++   .+.+..
T Consensus       181 ~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~---~~~~~~  255 (369)
T 1uuf_A          181 ITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNAD---EMAAHL  255 (369)
T ss_dssp             HHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHH---HHHTTT
T ss_pred             HHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHH---HHHHhh
Confidence            578999954 68999999999995 999999999999999999999988765               1112   223332


Q ss_pred             CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                       +++|++|||+|.+ .+..++++++++|+++.+|.....     ...++...++.+++++.++....     .+.+++++
T Consensus       256 -~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  324 (369)
T 1uuf_A          256 -KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-----HKSPEVFNLIMKRRAIAGSMIGG-----IPETQEML  324 (369)
T ss_dssp             -TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCC-----HHHHHHHH
T ss_pred             -cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCC-----ccccCHHHHHhCCcEEEEeecCC-----HHHHHHHH
Confidence             5899999999987 789999999999999999875421     11345567788999999987654     34577889


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.+. +||++++++|++.++++.
T Consensus       325 ~l~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~  355 (369)
T 1uuf_A          325 DFCAEHGIVADIE-MIRADQINEAYERMLRGD  355 (369)
T ss_dssp             HHHHHHTCCCCEE-EECGGGHHHHHHHHHTTC
T ss_pred             HHHHhCCCCcceE-EEcHHHHHHHHHHHHcCC
Confidence            9999999998764 699999999999998764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.90  E-value=4.9e-23  Score=155.00  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=128.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH--------HhHcCCCccEE
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL--------KRWFPQGIDIY   73 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~   73 (180)
                      ++||+++ +..++++|++|||+|+ |++|++++|+||.+|++|+++++++++.  ++...+        .+....++|++
T Consensus       163 ~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~--~~~~~lGa~~v~~~~~~~~~~~D~v  238 (348)
T 3two_A          163 ITTYSPL-KFSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKK--QDALSMGVKHFYTDPKQCKEELDFI  238 (348)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTH--HHHHHTTCSEEESSGGGCCSCEEEE
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHH--HHHHhcCCCeecCCHHHHhcCCCEE
Confidence            5789999 4569999999999995 9999999999999999999999887650  011100        01112279999


Q ss_pred             EeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHh-hcCcEEEeeeccchHHHHHHHHHHHHHHHHCC
Q 041355           74 FENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI-GKRIRLEGFLAGDYYHLYLKFLELVIPAIREG  151 (180)
Q Consensus        74 ~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  151 (180)
                      |||+|++ .+..++++++++|+++.+|.....    ....++...++ .+++++.++....     .+.++++++++.+|
T Consensus       239 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g  309 (348)
T 3two_A          239 ISTIPTHYDLKDYLKLLTYNGDLALVGLPPVE----VAPVLSVFDFIHLGNRKVYGSLIGG-----IKETQEMVDFSIKH  309 (348)
T ss_dssp             EECCCSCCCHHHHHTTEEEEEEEEECCCCCGG----GCCEEEHHHHHHTCSCEEEECCSCC-----HHHHHHHHHHHHHT
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCC----CcccCCHHHHHhhCCeEEEEEecCC-----HHHHHHHHHHHHhC
Confidence            9999988 999999999999999999875411    11124556677 8999999988765     34578899999999


Q ss_pred             CccceeeeecchhhHHHHHHHHHhhh
Q 041355          152 KMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       152 ~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ++++.+ +++|++++++|++.++++.
T Consensus       310 ~l~~~~-~~~~l~~~~~A~~~~~~~~  334 (348)
T 3two_A          310 NIYPEI-DLILGKDIDTAYHNLTHGK  334 (348)
T ss_dssp             TCCCCE-EEECGGGHHHHHHHHHTTC
T ss_pred             CCCceE-EEEEHHHHHHHHHHHHcCC
Confidence            999965 7999999999999998874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.90  E-value=1.5e-23  Score=158.51  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=128.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------Ccc-hHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEP-DLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~-~~~~~~~~~   65 (180)
                      ++||+++.+ .++++|++|||+|+ |++|++++|+||.+|++|+++++++++               .++ ++.+.+.  
T Consensus       166 ~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~--  241 (360)
T 1piw_A          166 LTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF--  241 (360)
T ss_dssp             HHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC--
T ss_pred             HHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh--
Confidence            578999955 89999999999997 999999999999999999999988776               112 3332222  


Q ss_pred             cCCCccEEEeCCCh---hhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGG---KMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        66 ~~~~~d~~~d~~g~---~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                        +++|++|||+|.   ..+..++++++++|+++.+|....      ...++...++.+++++.++....     .+.++
T Consensus       242 --~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~  308 (360)
T 1piw_A          242 --DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ------HEMLSLKPYGLKAVSISYSALGS-----IKELN  308 (360)
T ss_dssp             --SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS------SCCEEECGGGCBSCEEEECCCCC-----HHHHH
T ss_pred             --cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC------ccccCHHHHHhCCeEEEEEecCC-----HHHHH
Confidence              589999999998   578888999999999999987542      11234445677889999877644     35678


Q ss_pred             HHHHHHHCCCccceeeeecchhh--HHHHHHHHHhhh
Q 041355          143 LVIPAIREGKMVYVEDIAEGLEK--ISRNCYTLKWRV  177 (180)
Q Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~--~~~a~~~l~~~~  177 (180)
                      ++++++.+|++++.+ ++||+++  +++|++.++++.
T Consensus       309 ~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~~~~  344 (360)
T 1piw_A          309 QLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERMEKGD  344 (360)
T ss_dssp             HHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHHCCC
Confidence            899999999999988 8999999  999999988764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.90  E-value=4.1e-24  Score=161.40  Aligned_cols=158  Identities=10%  Similarity=0.049  Sum_probs=130.9

Q ss_pred             chHHHHHHHHcCCCCC------CEEEEecCCchHHHHH-HHHH-HHcCCE-EEEEeCCCC---C--------------Cc
Q 041355            2 LIVGNLIILVCSPKKG------EYVYVSAASGAVGQLV-GQFA-KLAGCY-VVGSAGSKE---K--------------EE   55 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g------~~vlI~Ga~g~vG~~~-iqla-k~~g~~-vi~~~~~~~---~--------------~~   55 (180)
                      ++||+++ +..++++|      ++|||+|+ |++|+++ +|+| |.+|++ |++++++++   +              ++
T Consensus       153 ~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~  230 (357)
T 2b5w_A          153 SITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQ  230 (357)
T ss_dssp             HHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTT
T ss_pred             HHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCc
Confidence            6899999 77889999      99999997 9999999 9999 999996 999999887   4              12


Q ss_pred             chHHHHHHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHH----hhcCcEEEeeec
Q 041355           56 PDLDAALKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQL----IGKRIRLEGFLA  130 (180)
Q Consensus        56 ~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  130 (180)
                      +++.+ +++. ++++|++|||+|+. .+..++++++++|+++.+|....     ....+++..+    +.+++++.++..
T Consensus       231 ~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~~~~~~~~~~~~~~~~i~g~~~  303 (357)
T 2b5w_A          231 TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSD-----WAFEVDAGAFHREMVLHNKALVGSVN  303 (357)
T ss_dssp             SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCC-----CCCCCCHHHHHHHHHHTTCEEEECCC
T ss_pred             cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCC-----CCceecHHHHhHHHHhCCeEEEEecc
Confidence            34445 6666 55899999999986 88999999999999999987542     1223455556    788999998876


Q ss_pred             cchHHHHHHHHHHHHHHHHCC--C-ccceeeeecchhhHHHHHHHH
Q 041355          131 GDYYHLYLKFLELVIPAIREG--K-MVYVEDIAEGLEKISRNCYTL  173 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~a~~~l  173 (180)
                      ..     .+.++++++++.+|  + +++.++++|+++++++|++.+
T Consensus       304 ~~-----~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~  344 (357)
T 2b5w_A          304 SH-----VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD  344 (357)
T ss_dssp             CC-----HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS
T ss_pred             CC-----HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh
Confidence            54     45688899999999  8 688899999999999999876

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.89  E-value=2.2e-22  Score=151.93  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             chHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      ++||+++ +..+++ +|++|+|+| +|++|++++|+||.+|++|+++++++++              +..+ .+.+++.+
T Consensus       166 ~ta~~~l-~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~  242 (357)
T 2cf5_A          166 VTVYSPL-SHFGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSD-QAKMSELA  242 (357)
T ss_dssp             HHHHHHH-HHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTC-HHHHHHST
T ss_pred             HHHHHHH-HhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeecccc-HHHHHHhc
Confidence            5789998 457888 999999999 6999999999999999999999988764              0011 23444444


Q ss_pred             CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                       +++|++|||+|.+ .+..++++++++|+++.+|.....     ...++.. ++.+++++.++....     .+.+++++
T Consensus       243 -~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~-~~~~~~~i~g~~~~~-----~~~~~~~~  310 (357)
T 2cf5_A          243 -DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNP-----LQFLTPL-LMLGRKVITGSFIGS-----MKETEEML  310 (357)
T ss_dssp             -TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSC-----CCCCHHH-HHHHTCEEEECCSCC-----HHHHHHHH
T ss_pred             -CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCC-----ccccCHH-HHhCccEEEEEccCC-----HHHHHHHH
Confidence             4799999999976 788999999999999999875421     1114444 778899999887644     34578899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.+ ++||++++++|++.++++.
T Consensus       311 ~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  341 (357)
T 2cf5_A          311 EFCKEKGLSSII-EVVKMDYVNTAFERLEKND  341 (357)
T ss_dssp             HHHHHTTCCCCE-EEEEGGGHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCce-EEEeHHHHHHHHHHHHCCC
Confidence            999999999876 6899999999999988763

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.88  E-value=9e-22  Score=149.01  Aligned_cols=160  Identities=15%  Similarity=0.086  Sum_probs=128.5

Q ss_pred             chHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~-~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~   66 (180)
                      ++||+++. ..+++ +|++|||+| +|++|++++|+||.+|++|+++++++++              +..+ .+.+++.+
T Consensus       173 ~ta~~al~-~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~-~~~~~~~~  249 (366)
T 1yqd_A          173 ITVYSPLK-YFGLDEPGKHIGIVG-LGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD-QEQMQAAA  249 (366)
T ss_dssp             HHHHHHHH-HTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC-HHHHHHTT
T ss_pred             HHHHHHHH-hcCcCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC-HHHHHHhh
Confidence            57899984 56788 999999999 5999999999999999999999987764              0011 23445544


Q ss_pred             CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                       +++|++|||+|.. .+..++++++++|+++.++....      ...++...++.+++++.++....     .+.+.+++
T Consensus       250 -~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~  317 (366)
T 1yqd_A          250 -GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEK------PLELPAFSLIAGRKIVAGSGIGG-----MKETQEMI  317 (366)
T ss_dssp             -TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSS------CEEECHHHHHTTTCEEEECCSCC-----HHHHHHHH
T ss_pred             -CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCC------CCCcCHHHHHhCCcEEEEecCCC-----HHHHHHHH
Confidence             4799999999976 78899999999999999987542      12345567888999999887644     34577899


Q ss_pred             HHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          146 PAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       146 ~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      +++.+|++++.+ ++||++++++|++.++++.
T Consensus       318 ~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  348 (366)
T 1yqd_A          318 DFAAKHNITADI-EVISTDYLNTAMERLAKND  348 (366)
T ss_dssp             HHHHHTTCCCCE-EEECGGGHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCce-EEEcHHHHHHHHHHHHcCC
Confidence            999999999876 6899999999999998763

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.87  E-value=2.3e-22  Score=152.26  Aligned_cols=159  Identities=11%  Similarity=0.087  Sum_probs=127.9

Q ss_pred             chHHHHHH--H--HcCCC--C-------CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC---CC--------Cc--
Q 041355            2 LIVGNLII--L--VCSPK--K-------GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK---EK--------EE--   55 (180)
Q Consensus         2 l~a~~~l~--~--~~~~~--~-------g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~---~~--------~~--   55 (180)
                      ++||+++.  +  ..+++  +       |++|+|+|+ |++|++++|+++.+|++|+++++++   ++        .+  
T Consensus       153 ~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v  231 (366)
T 2cdc_A          153 ADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY  231 (366)
T ss_dssp             HHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence            57899996  4  78888  8       999999998 9999999999999999999999987   43        00  


Q ss_pred             --chHHHHHHhHcCCCccEEEeCCChh-hH-HHHHHhhccCCEEEEEeccccccCCCCccccchHH---HhhcCcEEEee
Q 041355           56 --PDLDAALKRWFPQGIDIYFENVGGK-ML-DAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQ---LIGKRIRLEGF  128 (180)
Q Consensus        56 --~~~~~~~~~~~~~~~d~~~d~~g~~-~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  128 (180)
                        .++.+.+++ +++++|++|||+|.. .+ ..++++++++|+++.++.....     ...++...   ++.+++++.|+
T Consensus       232 ~~~~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~i~g~  305 (366)
T 2cdc_A          232 NSSNGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSG-----SVPLDYKTLQEIVHTNKTIIGL  305 (366)
T ss_dssp             ECTTCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSC-----EEEEEHHHHHHHHHTTCEEEEC
T ss_pred             chHHHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCC-----ccccChhhhHHHHhcCcEEEEe
Confidence              022344554 446899999999986 77 8899999999999999875421     12345555   78899999987


Q ss_pred             eccchHHHHHHHHHHHHHHHHCCC------ccceeeeecchhhHHHHHHH
Q 041355          129 LAGDYYHLYLKFLELVIPAIREGK------MVYVEDIAEGLEKISRNCYT  172 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~a~~~  172 (180)
                      ....     .+.++++++++.+|+      +++.++++|+++++++|++.
T Consensus       306 ~~~~-----~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~  350 (366)
T 2cdc_A          306 VNGQ-----KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKV  350 (366)
T ss_dssp             CCCC-----HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHH
T ss_pred             cCCC-----HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHH
Confidence            6643     456788999999998      66888999999999999998

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.87  E-value=1.3e-22  Score=154.20  Aligned_cols=166  Identities=15%  Similarity=0.197  Sum_probs=127.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEec-CCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSA-ASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~G-a~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      ++||+++ +... ++|++|||+| |+|++|++++|+||.+|++|+++++++++               +++++.+.+++.
T Consensus       158 ~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~  235 (379)
T 3iup_A          158 LTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEA  235 (379)
T ss_dssp             HHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHH
T ss_pred             HHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHH
Confidence            5788777 4445 8999999996 79999999999999999999999987665               456788899998


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhc-----cCC-----------EEEEEeccccccCCCCccccchHHHhhcCcEEEe
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMR-----LRG-----------RIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEG  127 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~-----~~G-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (180)
                      +++ ++|++|||+|++ ....++.+++     ++|           +++.+|....       .+......+.+++++.|
T Consensus       236 t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~-------~~~~~~~~~~~~~~i~g  308 (379)
T 3iup_A          236 LVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDT-------SPTEFNRNFGMAWGMGG  308 (379)
T ss_dssp             HHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEE-------EEEEECCCSCSCEEEEE
T ss_pred             hcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCC-------CccccccccccceEEEE
Confidence            887 999999999986 6677777774     554           4444443221       11222345667889999


Q ss_pred             eeccch-----HHHHHHHHHHHHHHHHCCCccceeeeecchhhH--HHHHHHHHhhh
Q 041355          128 FLAGDY-----YHLYLKFLELVIPAIREGKMVYVEDIAEGLEKI--SRNCYTLKWRV  177 (180)
Q Consensus       128 ~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~a~~~l~~~~  177 (180)
                      ++...+     +....+.++.+.+++.+ .+++.++++|+++++  ++|++.++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~  364 (379)
T 3iup_A          309 WLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRA  364 (379)
T ss_dssp             CCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCC
T ss_pred             EEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCC
Confidence            877544     23344567778888888 589999999999999  99999998764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=148.09  Aligned_cols=169  Identities=17%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             chHHHHHHHHcC----CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHH
Q 041355            2 LIVGNLIILVCS----PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~----~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~   62 (180)
                      ++||+++.+..+    +++|++|+|+||+|++|++++|+||.+|++|++++++ ++               .++++.+.+
T Consensus       165 ~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~-~~~~~~~~lGa~~v~~~~~~~~~~~~  243 (375)
T 2vn8_A          165 LTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-DASELVRKLGADDVIDYKSGSVEEQL  243 (375)
T ss_dssp             HHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECG-GGHHHHHHTTCSEEEETTSSCHHHHH
T ss_pred             HHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCh-HHHHHHHHcCCCEEEECCchHHHHHH
Confidence            589999977788    9999999999999999999999999999999998853 33               234555555


Q ss_pred             HhHcCCCccEEEeCCChh--hHHHHHHhhccCCEEEEEeccccccCCCCccccch----HHHhh-------cCcEEEeee
Q 041355           63 KRWFPQGIDIYFENVGGK--MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL----EQLIG-------KRIRLEGFL  129 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~  129 (180)
                      ++.  +++|++|||+|++  .+..++.+++++|+++.+|...............+    ..++.       +...+.+..
T Consensus       244 ~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  321 (375)
T 2vn8_A          244 KSL--KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAF  321 (375)
T ss_dssp             HTS--CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             hhc--CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEE
Confidence            542  4799999999987  34778889999999999986432100000000000    11112       233333222


Q ss_pred             ccchHHHHHHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          130 AGDYYHLYLKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      ...    ..+.++++.+++.+|++++.++++||++++++|++.++++.
T Consensus       322 ~~~----~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  365 (375)
T 2vn8_A          322 FMA----SGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGH  365 (375)
T ss_dssp             CCC----CHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCC
T ss_pred             eCC----CHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCC
Confidence            111    14567889999999999999999999999999999998763

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.87  E-value=6.6e-22  Score=176.67  Aligned_cols=171  Identities=19%  Similarity=0.220  Sum_probs=139.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~   62 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|+||..|++|+++++++++                   .+.++.+.+
T Consensus      1653 ~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i 1732 (2512)
T 2vz8_A         1653 TTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHV 1732 (2512)
T ss_dssp             HHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHH
Confidence            5789999888899999999999999999999999999999999999987543                   234677888


Q ss_pred             HhHcCC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLY  137 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  137 (180)
                      ++.+++ ++|++|||++++.+..++++++++|+++.+|......     ........+.+++++.++.....    +...
T Consensus      1733 ~~~t~g~GvDvVld~~g~~~l~~~l~~L~~~Gr~V~iG~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 1807 (2512)
T 2vz8_A         1733 LRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSN-----NHALGMAVFLKNVTFHGILLDSLFEEGGATW 1807 (2512)
T ss_dssp             HHTTTSCCEEEEEECCCHHHHHHHHTTEEEEEEEEECCCHHHHT-----TCEEEGGGGGGCCEEEECCGGGTTSSCCHHH
T ss_pred             HHhcCCCCceEEEECCCchHHHHHHHhcCCCcEEEEeecccccc-----cCcccccccccCCcEEEeeHHHHhhhCHHHH
Confidence            888887 8999999999889999999999999999998643211     01112345678899988776432    2344


Q ss_pred             HHHHHHHHHHHHCCCccceeeeecchhhHHHHHHHHHhhh
Q 041355          138 LKFLELVIPAIREGKMVYVEDIAEGLEKISRNCYTLKWRV  177 (180)
Q Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~l~~~~  177 (180)
                      .+.++.+.+++.+|.++|.++++||++++++|++.++++.
T Consensus      1808 ~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~ 1847 (2512)
T 2vz8_A         1808 QEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGK 1847 (2512)
T ss_dssp             HHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccC
Confidence            5667777778889999999999999999999999998764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.85  E-value=1.9e-20  Score=130.32  Aligned_cols=154  Identities=19%  Similarity=0.260  Sum_probs=118.4

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      ++||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++               .+++..+.+.+.+
T Consensus        24 ~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           24 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT  103 (198)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHh
Confidence            5899999777899999999999999999999999999999999999987653               2345667777777


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccc----hHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGD----YYHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  141 (180)
                      .+ ++|+++||+|.+.+..++++++++|+++.+|......    ....++ ..+.+++++.++....    ......+.+
T Consensus       104 ~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (198)
T 1pqw_A          104 DGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA----DASLGL-AALAKSASFSVVDLDLNLKLQPARYRQLL  178 (198)
T ss_dssp             TTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT----TCEEEG-GGGTTTCEEEECCHHHHHHHCHHHHHHHH
T ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcC----cCcCCh-hHhcCCcEEEEEehHHhhccCHHHHHHHH
Confidence            65 8999999999888999999999999999998754211    111222 2346778887664411    111235678


Q ss_pred             HHHHHHHHCCCccceeeee
Q 041355          142 ELVIPAIREGKMVYVEDIA  160 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~~~~~  160 (180)
                      +++.+++.+|+++|.+.++
T Consensus       179 ~~~~~l~~~g~l~~~~~~~  197 (198)
T 1pqw_A          179 QHILQHVADGKLEVLPVTA  197 (198)
T ss_dssp             HHHHHHHHTTSSCCCCCC-
T ss_pred             HHHHHHHHcCCccCCCCCc
Confidence            9999999999999865443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.90  E-value=7.2e-09  Score=78.16  Aligned_cols=133  Identities=16%  Similarity=0.029  Sum_probs=85.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Ccc------hHHHHHHhHcCCCccEEEeCCChhh-
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEP------DLDAALKRWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~------~~~~~~~~~~~~~~d~~~d~~g~~~-   81 (180)
                      +++|+|+|+ |++|+++++.++.+|++|+++++++++        ...      + .+.+.+.. .++|++++|++.+. 
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSN-SAEIETAV-AEADLLIGAVLVPGR  243 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECC-HHHHHHHH-HTCSEEEECCCCTTS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCC-HHHHHHHH-cCCCEEEECCCcCCC
Confidence            489999995 999999999999999999999987654        000      0 01111111 16899999997542 


Q ss_pred             ------HHHHHHhhccCCEEEEEeccccccCCC-CccccchHHHhhcCcEEEeeeccch-------HHHHHHHHHHHHHH
Q 041355           82 ------LDAVLLNMRLRGRIAVSSIISQYNLEK-PEGVHNLEQLIGKRIRLEGFLAGDY-------YHLYLKFLELVIPA  147 (180)
Q Consensus        82 ------~~~~~~~l~~~G~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  147 (180)
                            ....+..++++|+++.++...+..... ....++...+..+++++.+....+.       ....+..+..+.++
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l  323 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKL  323 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence                  566778899999999998754321000 0112222234456777766543221       12224566788888


Q ss_pred             HHCCC
Q 041355          148 IREGK  152 (180)
Q Consensus       148 ~~~g~  152 (180)
                      +++|.
T Consensus       324 ~~~G~  328 (361)
T 1pjc_A          324 ANQGL  328 (361)
T ss_dssp             HHHGG
T ss_pred             HhCCc
Confidence            88874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.70  E-value=1.1e-07  Score=71.87  Aligned_cols=135  Identities=16%  Similarity=0.090  Sum_probs=78.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc---ch------HHHHHHhHcCCCccEEEeCCChhh-
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE---PD------LDAALKRWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~---~~------~~~~~~~~~~~~~d~~~d~~g~~~-   81 (180)
                      ++++|+|+|+ |++|+.+++.++.+|++|+++++++++    .+   ..      -.+.+.+.. .++|++++|++... 
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~-~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV-QHADLLIGAVLVPGA  242 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH-HHCSEEEECCC----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH-hCCCEEEECCCCCcc
Confidence            4689999996 999999999999999999999887543    00   00      011122211 15899999998542 


Q ss_pred             ------HHHHHHhhccCCEEEEEeccccccCCCC-ccccchHHHhhcCcEEEeeeccch-------HHHHHHHHHHHHHH
Q 041355           82 ------LDAVLLNMRLRGRIAVSSIISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDY-------YHLYLKFLELVIPA  147 (180)
Q Consensus        82 ------~~~~~~~l~~~G~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  147 (180)
                            ....++.++++|+++.++...+...... +...+...+..+++++.+....+.       ....+..+..+.++
T Consensus       243 ~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l  322 (369)
T 2eez_A          243 KAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKL  322 (369)
T ss_dssp             ---CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHH
Confidence                  4677788999999999987543100000 111222233346666666543221       11224556777777


Q ss_pred             HHCCC
Q 041355          148 IREGK  152 (180)
Q Consensus       148 ~~~g~  152 (180)
                      +.+|.
T Consensus       323 ~~~g~  327 (369)
T 2eez_A          323 AEKGL  327 (369)
T ss_dssp             HHHTT
T ss_pred             HhcCh
Confidence            77764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.67  E-value=1.3e-07  Score=71.76  Aligned_cols=85  Identities=15%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc---ch------HHHHHHhHcCCCccEEEeCCChhh-
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE---PD------LDAALKRWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~---~~------~~~~~~~~~~~~~d~~~d~~g~~~-   81 (180)
                      +|++|+|+| .|++|+.+++.++.+|++|+++++++++    .+   ..      -...+.+.. .++|++++|++.+. 
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l-~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAV-KRADLVIGAVLVPGA  244 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHH-HHCSEEEECCCCTTS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHH-cCCCEEEECCCcCCC
Confidence            578999999 5999999999999999999999887543    00   00      011122211 15899999997542 


Q ss_pred             ------HHHHHHhhccCCEEEEEeccc
Q 041355           82 ------LDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        82 ------~~~~~~~l~~~G~~v~~~~~~  102 (180)
                            ....+..++++|.++.++...
T Consensus       245 ~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             CCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCcceecHHHHhcCCCCcEEEEEecCC
Confidence                  567788899999999998543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.51  E-value=2.5e-07  Score=72.09  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=69.3

Q ss_pred             HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccEE
Q 041355            4 VGNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDIY   73 (180)
Q Consensus         4 a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~   73 (180)
                      +|+++.+... ..+|++|+|.| .|.+|..++|.++.+|++|+++++++.+         +..++.    +.. .++|++
T Consensus       260 ~~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~----e~l-~~aDvV  333 (494)
T 3ce6_A          260 LIDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVE----EAI-GDADIV  333 (494)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH----HHG-GGCSEE
T ss_pred             hhHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHH----HHH-hCCCEE
Confidence            4555533322 67999999999 7999999999999999999998887543         001111    111 268999


Q ss_pred             EeCCChh-hHH-HHHHhhccCCEEEEEeccc
Q 041355           74 FENVGGK-MLD-AVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        74 ~d~~g~~-~~~-~~~~~l~~~G~~v~~~~~~  102 (180)
                      ++|++.. .+. ..+..++++|++++++...
T Consensus       334 i~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          334 VTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             EECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             EECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            9999976 344 6788999999999998643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.48  E-value=4.3e-07  Score=69.03  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------C-c-c--hH------------------------HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------E-E-P--DL------------------------DA   60 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------~-~-~--~~------------------------~~   60 (180)
                      +|++|+|+| +|.+|+.+++.++.+|++|+++++++.+       . . .  +.                        .+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            689999999 7999999999999999999988887664       0 0 0  01                        11


Q ss_pred             HHHhHcCCCccEEEeCC---Chhh----HHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeec
Q 041355           61 ALKRWFPQGIDIYFENV---GGKM----LDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLA  130 (180)
Q Consensus        61 ~~~~~~~~~~d~~~d~~---g~~~----~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (180)
                      .+.+... ++|++++|+   |.+.    ....+..+++++.++.++...+...   ........+..+++++.+...
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~---~~~~~~~~~~~~~v~i~g~~~  322 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC---PLSEPGKIVVKHGVKIVGHTN  322 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS---TTCCTTCEEEETTEEEECCSS
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCe---ecccCCcEEEECCEEEEEeCC
Confidence            1333332 689999999   5322    2667888999999999986442110   000111123456777777654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.29  E-value=2.6e-06  Score=65.06  Aligned_cols=110  Identities=16%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------C-c---------------------chH----HHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------E-E---------------------PDL----DAAL   62 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------~-~---------------------~~~----~~~~   62 (180)
                      +|.+|+|+| .|.+|+.++++++.+|++|++++++.++       . .                     +++    .+.+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            578999999 7999999999999999999999887664       0 0                     000    0012


Q ss_pred             HhHcCCCccEEEeCC---Chh---h-HHHHHHhhccCCEEEEEeccccccCCCCccccchH-HHhhcCcEEEeeec
Q 041355           63 KRWFPQGIDIYFENV---GGK---M-LDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLE-QLIGKRIRLEGFLA  130 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~---g~~---~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (180)
                      .+... ++|++++|+   |..   . ....+..+++++.++.++...+....   ...... ....+++++.+...
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~---~~~~~~p~~~~~gv~i~g~~~  321 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCE---YTVPGEIFTTENGVKVIGYTD  321 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT---TCCTTSEEECTTSCEEECCSC
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcC---cccCCCceEEECCEEEEeeCC
Confidence            22222 589999995   321   1 25678899999999999865321110   001101 13457788887653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.25  E-value=1.7e-06  Score=62.58  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|+.++|+||++++|.+.++.+...|++|+.++++.+.                    +.+++...+.+..  -|++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            58899999999999999999999999999999988654                    2222222222222  2479999


Q ss_pred             EeCCChh-----------h---------------HHHHHHhhccCCEEEEEeccccc
Q 041355           74 FENVGGK-----------M---------------LDAVLLNMRLRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~~~~~~~  104 (180)
                      +++.|..           .               .+.+++.++++|+++.+++..+.
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~  164 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS  164 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc
Confidence            9998741           0               13344566788999999876543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.23  E-value=1.4e-05  Score=57.02  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------CcchHHHHHHhHc--CCCccEEEeCCCh--
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEPDLDAALKRWF--PQGIDIYFENVGG--   79 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~~~~~~~~~~~--~~~~d~~~d~~g~--   79 (180)
                      ..+++++|+||+|++|..+++.+...|++|++++++.++           +.+++...+.+..  .+++|+++.+.|.  
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            347889999999999999999888899999999998765           2223333333332  2479999999872  


Q ss_pred             -----h-----h---------------HHHHHHhhccCCEEEEEecccc
Q 041355           80 -----K-----M---------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        80 -----~-----~---------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                           .     .               ...+++.++++|+++.+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  148 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAA  148 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhh
Confidence                 0     0               1223344556789999987654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=98.17  E-value=2.3e-05  Score=55.83  Aligned_cols=87  Identities=17%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC----cchHH--HHHHhH---cCCCccEEEeCCChhh-------
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----EPDLD--AALKRW---FPQGIDIYFENVGGKM-------   81 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~----~~~~~--~~~~~~---~~~~~d~~~d~~g~~~-------   81 (180)
                      ++++|+||+|++|..+++.+...|++|+++++++++.    ..|+.  +.+.+.   ..+++|+++.+.|...       
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            3689999999999999998888999999999887540    11221  223222   2257899999987321       


Q ss_pred             ------------HHHHHHhhcc--CCEEEEEeccccc
Q 041355           82 ------------LDAVLLNMRL--RGRIAVSSIISQY  104 (180)
Q Consensus        82 ------------~~~~~~~l~~--~G~~v~~~~~~~~  104 (180)
                                  ...+++.++.  .|+++.+++....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence                        2334444433  3899999876543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.13  E-value=1e-05  Score=58.00  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchHHHHHHhHc--CCCc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDLDAALKRWF--PQGI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~   70 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++.                       +.+++...+.+..  .|++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            58899999999999999999999999999999887553                       2223333333322  2489


Q ss_pred             cEEEeCCChh--------------------------hHHHHHHhh-c--cCCEEEEEeccccc
Q 041355           71 DIYFENVGGK--------------------------MLDAVLLNM-R--LRGRIAVSSIISQY  104 (180)
Q Consensus        71 d~~~d~~g~~--------------------------~~~~~~~~l-~--~~G~~v~~~~~~~~  104 (180)
                      |+++++.|..                          ..+.+++.+ +  .+|+++++++..+.
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~  150 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ  150 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence            9999998741                          013345555 2  45899999877653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.13  E-value=1.4e-05  Score=56.38  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Ccc-hH---HHHHHhHcC-CCccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEP-DL---DAALKRWFP-QGIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~-~~---~~~~~~~~~-~~~d~~~d~~g~   79 (180)
                      +.+++|+||+|++|..+++.+...|++|++++++++.            .++ ++   .+.+.+..+ +++|+++.+.|.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~   82 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG   82 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCcc
Confidence            5689999999999999999988899999999988654            111 11   222333333 589999999872


Q ss_pred             --------h-h------------------HHHHHHhhccCCEEEEEecccc
Q 041355           80 --------K-M------------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        80 --------~-~------------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                              + .                  ...+++.++++|+++.+++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  133 (236)
T 1ooe_A           83 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  133 (236)
T ss_dssp             CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             cCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence                    1 0                  1223344445789999887654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.12  E-value=2.2e-05  Score=55.62  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Ccc-hH---HHHHHhHcC-CCccEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEP-DL---DAALKRWFP-QGIDIYFENV   77 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~-~~---~~~~~~~~~-~~~d~~~d~~   77 (180)
                      ..+.+++|+||+|++|..+++.+...|++|++++++++.            .++ ++   .+.+.+..+ +++|+++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            457899999999999999999888889999999988653            111 12   222333333 5799999998


Q ss_pred             C
Q 041355           78 G   78 (180)
Q Consensus        78 g   78 (180)
                      |
T Consensus        85 g   85 (241)
T 1dhr_A           85 G   85 (241)
T ss_dssp             C
T ss_pred             c
Confidence            7

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.08  E-value=1.8e-05  Score=56.67  Aligned_cols=38  Identities=8%  Similarity=0.059  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||+|  ++|.+..+.+...|++|+.++++++.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS   44 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            588999999876  89999999888999999999988653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.07  E-value=3.1e-05  Score=54.99  Aligned_cols=88  Identities=16%  Similarity=0.125  Sum_probs=64.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++.+.                .+++-.+.+.+.. +++|+++++.|-
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g~iDiLVNNAGi   88 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL-PRLDVLVNNAGI   88 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhc-CCCCEEEECCCC
Confidence            58999999999999999999999999999999998765                2222233333332 579999999873


Q ss_pred             h---------h---------------HHHHHHhhc-cCCEEEEEeccccc
Q 041355           80 K---------M---------------LDAVLLNMR-LRGRIAVSSIISQY  104 (180)
Q Consensus        80 ~---------~---------------~~~~~~~l~-~~G~~v~~~~~~~~  104 (180)
                      .         .               .+.+++.++ .+|+++++++..+.
T Consensus        89 ~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  138 (242)
T 4b79_A           89 SRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST  138 (242)
T ss_dssp             CCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred             CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            1         0               133445554 57999999877643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.06  E-value=2.5e-05  Score=56.40  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHc--CCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWF--PQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~--~~~   69 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++..                        +.+++...+.+..  .++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999888899999988766432                        2222222222221  147


Q ss_pred             ccEEEeCCChh-----------h---------------HHHHHHhhccCCEEEEEeccc
Q 041355           70 IDIYFENVGGK-----------M---------------LDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        70 ~d~~~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      +|+++.+.|..           .               ...+++.++++|+++.+++..
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~  168 (271)
T 3v2g_A          110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNL  168 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChh
Confidence            99999998731           0               123344556789999997754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.05  E-value=1.9e-05  Score=57.57  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+++||+||++++|.++++.+...|++|++++++.+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4789999999999999999988889999999988764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.05  E-value=1.1e-05  Score=58.82  Aligned_cols=89  Identities=9%  Similarity=-0.008  Sum_probs=63.7

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHH------------HHhHcCCCccEEEeC
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAA------------LKRWFPQGIDIYFEN   76 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~------------~~~~~~~~~d~~~d~   76 (180)
                      ..++++|++||..| +|+.|+.++.+++..|++|++++.+++.  ........            ..+..++.||+|+.+
T Consensus       117 la~l~~g~rVLDIG-cG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~  195 (298)
T 3fpf_A          117 LGRFRRGERAVFIG-GGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA  195 (298)
T ss_dssp             HTTCCTTCEEEEEC-CCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred             HcCCCCcCEEEEEC-CCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence            46789999999999 8887888888888889999999998764  00000000            011113479999865


Q ss_pred             CCh----hhHHHHHHhhccCCEEEEEec
Q 041355           77 VGG----KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        77 ~g~----~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ...    ..+..+.+.|+|+|+++....
T Consensus       196 a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          196 ALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             TTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            442    267888899999999997654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=98.03  E-value=2.3e-05  Score=56.47  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHc--CCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWF--PQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~--~~~   69 (180)
                      .|++++|+||++++|.+.++.+...|++|+++++++..                        +.+++.+.+.+..  .++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999888899999987765432                        1222222222221  147


Q ss_pred             ccEEEeCCChh-----------h---------------HHHHHHhhccCCEEEEEeccc
Q 041355           70 IDIYFENVGGK-----------M---------------LDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        70 ~d~~~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      +|+++.+.|-.           .               ...+++.++++|+++.+++..
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            99999988731           0               133445666789999998755

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.02  E-value=1.2e-05  Score=56.30  Aligned_cols=61  Identities=10%  Similarity=0.075  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .+++++|+||++++|.+.++.+...|++|++++++.+-   +.+++.+.+.+.  +++|+++.+.|
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~--g~id~lv~nAg   68 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETI--GAFDHLIVTAG   68 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHH--CSEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            46789999999999999998888889999998887543   223333333333  57999999987

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=98.02  E-value=1.6e-05  Score=57.18  Aligned_cols=62  Identities=16%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHH---HHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLD---AALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~---~~~~~~~~~~~d~~~d~~g   78 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++.+             +.++..   +.+.+. -|++|+++++.|
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~G~iDilVnnAG   87 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQR-LGGVDVIVHMLG   87 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHH-TSSCSEEEECCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHH-cCCCCEEEECCC
Confidence            68999999999999999999999999999999997654             222222   222222 247999999876

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.02  E-value=1.1e-05  Score=57.71  Aligned_cols=89  Identities=15%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|...++.+...|++|+.++++++.                    +.+++...+.+..  .+++|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999888899999999987543                    1122222222211  2479999


Q ss_pred             EeCCChh-----------h---------------HHHHHHhhccCCEEEEEeccccc
Q 041355           74 FENVGGK-----------M---------------LDAVLLNMRLRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~~~~~~~  104 (180)
                      +.+.|-.           .               .+.+++.++++|+++.+++....
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~  143 (255)
T 4eso_A           87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE  143 (255)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc
Confidence            9988631           1               12223344567899999876543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=98.00  E-value=2.7e-05  Score=56.11  Aligned_cols=37  Identities=22%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.+++++.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~   62 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKA   62 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            5789999999999999988888888999998765544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.00  E-value=5.4e-05  Score=57.09  Aligned_cols=86  Identities=17%  Similarity=0.051  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc---------------chH------------HHHHHh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE---------------PDL------------DAALKR   64 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~---------------~~~------------~~~~~~   64 (180)
                      ++.+|+|.| .|.+|+.+++.++.+|++|++.++++++    .+               ..+            ...+.+
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            678999999 7999999999999999999999888764    00               000            111222


Q ss_pred             HcCCCccEEEeCCCh-----h--hHHHHHHhhccCCEEEEEecccc
Q 041355           65 WFPQGIDIYFENVGG-----K--MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~-----~--~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      .. .++|+++.|+.-     +  .....++.+++++.++.++...+
T Consensus       262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~G  306 (381)
T 3p2y_A          262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETG  306 (381)
T ss_dssp             HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGT
T ss_pred             HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCC
Confidence            21 268999998632     1  23678889999999999987654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.00  E-value=1.3e-05  Score=61.21  Aligned_cols=96  Identities=17%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-----HHHHhHcCCCccEEEeCCC
Q 041355            5 GNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-----AALKRWFPQGIDIYFENVG   78 (180)
Q Consensus         5 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~d~~g   78 (180)
                      +.++.+... .-.|++++|.| .|.+|..+++.++.+|++|+++.+++.+......     ..+.+.. ...|+++.|.|
T Consensus       207 ~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal-~~ADIVi~atg  284 (435)
T 3gvp_A          207 LDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVI-RQVDIVITCTG  284 (435)
T ss_dssp             HHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHT-TTCSEEEECSS
T ss_pred             HHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHH-hcCCEEEECCC
Confidence            445544443 45899999999 8999999999999999999998876432000000     0011111 25799999988


Q ss_pred             hh-hHH-HHHHhhccCCEEEEEeccc
Q 041355           79 GK-MLD-AVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        79 ~~-~~~-~~~~~l~~~G~~v~~~~~~  102 (180)
                      .. .+. ..+..+++++.+++++...
T Consensus       285 t~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             CcccCCHHHHHhcCCCcEEEEecCCC
Confidence            65 343 7788999999999997654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.99  E-value=3e-05  Score=56.26  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++.
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   63 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   63 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468899999999999999998888999999988875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.97  E-value=1.6e-06  Score=56.60  Aligned_cols=96  Identities=6%  Similarity=0.007  Sum_probs=61.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHH----------hHcCCCcc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALK----------RWFPQGID   71 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~----------~~~~~~~d   71 (180)
                      .+++.++ +......+++|+|.| +|.+|...++.++..|++|++..+++++ .+.+.+.+.          +.. .++|
T Consensus         7 sv~~~a~-~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~-~~~~a~~~~~~~~~~~~~~~~~-~~~D   82 (144)
T 3oj0_A            7 SIPSIVY-DIVRKNGGNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDH-VRAFAEKYEYEYVLINDIDSLI-KNND   82 (144)
T ss_dssp             SHHHHHH-HHHHHHCCCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHH-HHHHHHHHTCEEEECSCHHHHH-HTCS
T ss_pred             cHHHHHH-HHHHhccCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHHHHHhCCceEeecCHHHHh-cCCC
Confidence            3567777 444445599999999 7999999999988889997777776443 111111110          000 1579


Q ss_pred             EEEeCCChhhHHHHHHhhccCCEEEEEecc
Q 041355           72 IYFENVGGKMLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        72 ~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +++.|++..........+++++.++.++.+
T Consensus        83 ivi~at~~~~~~~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           83 VIITATSSKTPIVEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             EEEECSCCSSCSBCGGGCCTTCEEEECCSS
T ss_pred             EEEEeCCCCCcEeeHHHcCCCCEEEEccCC
Confidence            999999865211112567788888887654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.94  E-value=0.00013  Score=49.68  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=61.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC----------CEEEEEeCCCCC-------C-cch-----HHHHHHhHcCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG----------CYVVGSAGSKEK-------E-EPD-----LDAALKRWFPQ   68 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g----------~~vi~~~~~~~~-------~-~~~-----~~~~~~~~~~~   68 (180)
                      .-++++++||..| +|+ |..+..+++..+          .+|++++.++..       . ..+     ....+....++
T Consensus        18 ~~~~~~~~vLDlG-cG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (196)
T 2nyu_A           18 QILRPGLRVLDCG-AAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPG   95 (196)
T ss_dssp             CCCCTTCEEEEET-CCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred             CCCCCCCEEEEeC-CCC-CHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence            3468999999999 777 999999999876          689999988754       1 222     22333344444


Q ss_pred             -CccEEEe-----CCCh-------------hhHHHHHHhhccCCEEEEEec
Q 041355           69 -GIDIYFE-----NVGG-------------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        69 -~~d~~~d-----~~g~-------------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                       .||+|+.     +++.             ..+..+.+.|+|+|+++....
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence             7999984     3332             235566788999999987643

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.94  E-value=0.00012  Score=51.81  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=57.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC----cchHH--HHHHhH---cCCCccEEEeCCChhh-------
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE----EPDLD--AALKRW---FPQGIDIYFENVGGKM-------   81 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~----~~~~~--~~~~~~---~~~~~d~~~d~~g~~~-------   81 (180)
                      ++++|+||+|.+|..+++.+...|++|++++++.+..    ..|+.  +.+.+.   ..+++|+++.+.|...       
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~   81 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGVTAANSGL   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCTTSSCHHH
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCCCcchhHHH
Confidence            3689999999999999888888899999999986640    11111  122222   2357999999987311       


Q ss_pred             ------------HHHHHHhhcc--CCEEEEEeccccc
Q 041355           82 ------------LDAVLLNMRL--RGRIAVSSIISQY  104 (180)
Q Consensus        82 ------------~~~~~~~l~~--~G~~v~~~~~~~~  104 (180)
                                  +..+++.++.  .++++.+++....
T Consensus        82 ~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  118 (255)
T 2dkn_A           82 VVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAAT  118 (255)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccc
Confidence                        1222333333  3899998876543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.93  E-value=3.2e-05  Score=59.11  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             hHHHHHHHHc---CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHHH----------HHHhHcCC
Q 041355            3 IVGNLIILVC---SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLDA----------ALKRWFPQ   68 (180)
Q Consensus         3 ~a~~~l~~~~---~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~~----------~~~~~~~~   68 (180)
                      ++|.++....   .-.+|++|+|+| +|++|.++++.++..|+ +|+++.++.++ .+++..          .+.+.. .
T Consensus       150 ~a~~av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~G~~~V~v~~r~~~r-a~~la~~~g~~~~~~~~l~~~l-~  226 (404)
T 1gpj_A          150 IGSAAVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYER-AVELARDLGGEAVRFDELVDHL-A  226 (404)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHH-HHHHHHHHTCEECCGGGHHHHH-H
T ss_pred             HHHHHHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHCCCCEEEEEeCCHHH-HHHHHHHcCCceecHHhHHHHh-c
Confidence            4566653322   125899999999 69999999999999999 89998887543 001111          111111 2


Q ss_pred             CccEEEeCCChh-hH--HHHHHh--h--ccCCEEEEEecc
Q 041355           69 GIDIYFENVGGK-ML--DAVLLN--M--RLRGRIAVSSII  101 (180)
Q Consensus        69 ~~d~~~d~~g~~-~~--~~~~~~--l--~~~G~~v~~~~~  101 (180)
                      ++|++++|++.. .+  ...+..  +  +++|..+.++..
T Consensus       227 ~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          227 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            689999999865 22  134444  4  557777777654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.91  E-value=3.9e-05  Score=55.04  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchHHHHHHhHc--CCCcc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDLDAALKRWF--PQGID   71 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~~~~~~~~~--~~~~d   71 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++.                      ++.++.+.+.+..  -|++|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999988888899999999988764                      2222222222222  14799


Q ss_pred             EEEeCCChh----------h---------------HHHHHHhhc-cCCEEEEEecccc
Q 041355           72 IYFENVGGK----------M---------------LDAVLLNMR-LRGRIAVSSIISQ  103 (180)
Q Consensus        72 ~~~d~~g~~----------~---------------~~~~~~~l~-~~G~~v~~~~~~~  103 (180)
                      +++++.|-.          .               ...+++.++ .+|+++++++..+
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence            999998731          0               133444553 5799999987654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.90  E-value=0.00014  Score=54.48  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~   80 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQ   80 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4789999999999999998888888999999998865

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.90  E-value=0.0001  Score=48.53  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C-cc-------h--HHHHHHhHcCCCccEEEeCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E-EP-------D--LDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~-~~-------~--~~~~~~~~~~~~~d~~~d~~   77 (180)
                      ....++++|+|.| +|.+|..+++.++..|.+|+++++++++    . ..       +  -.+.+.+..-.++|+++.|+
T Consensus        14 ~~~~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           14 SKKQKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             ---CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             hcccCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            3446789999999 7999999999999999999999887654    1 10       0  01223322112799999999


Q ss_pred             Chhh-HHHHHHhhcc
Q 041355           78 GGKM-LDAVLLNMRL   91 (180)
Q Consensus        78 g~~~-~~~~~~~l~~   91 (180)
                      +.+. ...+...++.
T Consensus        93 ~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           93 NDDSTNFFISMNARY  107 (155)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            9763 3333344443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.89  E-value=8.7e-05  Score=52.73  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=46.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+++++|+||+|++|..+++.+...|++|++++++.++            +.+++.+.+.+..  .+++|+++.+.|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47889999999999999999888899999999987654            1122222222221  147899999887

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.89  E-value=8.6e-05  Score=46.17  Aligned_cols=80  Identities=14%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChhh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGKM   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~~   81 (180)
                      .+.+|+|+|+ |.+|..+++.+...| .+|+++++++++             .+..-.+.+.+... ++|++++|++...
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~d~vi~~~~~~~   81 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG-GFDAVISAAPFFL   81 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT-TCSEEEECSCGGG
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc-CCCEEEECCCchh
Confidence            4568999997 999999999999999 689998887543             00000123333322 6889999987654


Q ss_pred             HHHHHHhh-ccCCEEEE
Q 041355           82 LDAVLLNM-RLRGRIAV   97 (180)
Q Consensus        82 ~~~~~~~l-~~~G~~v~   97 (180)
                      .......+ +.+-.++.
T Consensus        82 ~~~~~~~~~~~g~~~~~   98 (118)
T 3ic5_A           82 TPIIAKAAKAAGAHYFD   98 (118)
T ss_dssp             HHHHHHHHHHTTCEEEC
T ss_pred             hHHHHHHHHHhCCCEEE
Confidence            44444433 44444443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.89  E-value=4.6e-05  Score=54.38  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchH---HHHHHhHcCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDL---DAALKRWFPQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~---~~~~~~~~~~~   69 (180)
                      .+++++|+||++++|.+.++.+...|++|+.++++.+.                       +.+++   .+.+.+.  ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--CC
Confidence            57889999999999999999888899999999998654                       11222   2333333  68


Q ss_pred             ccEEEeCCC
Q 041355           70 IDIYFENVG   78 (180)
Q Consensus        70 ~d~~~d~~g   78 (180)
                      +|+++.+.|
T Consensus        84 id~lv~nAg   92 (252)
T 3h7a_A           84 LEVTIFNVG   92 (252)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999999988

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.89  E-value=3.3e-05  Score=55.70  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      -..|+++||+||++++|.++++.+...|++|++++++.+.             +.+++...+.+..  .+++|+++.+.|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg   90 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAG   90 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            3468999999999999999999888899999999987654             2222222222221  147999999987


Q ss_pred             h
Q 041355           79 G   79 (180)
Q Consensus        79 ~   79 (180)
                      -
T Consensus        91 ~   91 (269)
T 3vtz_A           91 I   91 (269)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.89  E-value=4.1e-05  Score=55.11  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|..+++.+...|++|+.++++.++                    +.+++...+.+..  .+++|++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL  105 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999998999999999887543                    1122222222221  1479999


Q ss_pred             EeCCCh
Q 041355           74 FENVGG   79 (180)
Q Consensus        74 ~d~~g~   79 (180)
                      +.+.|.
T Consensus       106 vnnAg~  111 (266)
T 3grp_A          106 VNNAGI  111 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.88  E-value=3.7e-05  Score=55.21  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.++++.+...|++|+.+++..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            578999999999999999998888999999987653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.87  E-value=5.6e-05  Score=55.26  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=32.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..+++++|+||++++|..+++.+...|++|+.++++.+
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~   47 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVT   47 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999988888888999999998754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.87  E-value=5.6e-05  Score=55.21  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+++||+||++++|...++.+...|++|+.++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999888899999988876

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.86  E-value=4.3e-05  Score=54.82  Aligned_cols=63  Identities=19%  Similarity=0.189  Sum_probs=47.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+++++|+||+|++|.+.++.+...|++|++++++.+.              +.+++...+.+..  .+++|+++.+.|
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  105 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAG  105 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            47889999999999999999888899999999988654              2222222222221  147999999987

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.86  E-value=4.7e-05  Score=58.37  Aligned_cols=92  Identities=21%  Similarity=0.081  Sum_probs=66.1

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccEEE
Q 041355            5 GNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDIYF   74 (180)
Q Consensus         5 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~   74 (180)
                      +.++.+... .-.|++++|.| .|.+|..+++.++.+|++|+++.+++..         ...++.+.+     ...|+++
T Consensus       234 vdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL-----~~ADIVv  307 (464)
T 3n58_A          234 VDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAA-----STADIVV  307 (464)
T ss_dssp             HHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHG-----GGCSEEE
T ss_pred             HHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHH-----hhCCEEE
Confidence            344444333 45899999999 9999999999999999999998765422         001111111     1479999


Q ss_pred             eCCChh-hH-HHHHHhhccCCEEEEEeccc
Q 041355           75 ENVGGK-ML-DAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        75 d~~g~~-~~-~~~~~~l~~~G~~v~~~~~~  102 (180)
                      .|.|.. .+ ...+..+++++.+++++...
T Consensus       308 ~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          308 TTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             ECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             ECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            999866 33 57788999999999987654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=6.5e-05  Score=54.28  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|..+++.+...|++|++++++.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            468899999999999999998888999999998874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.84  E-value=2.6e-05  Score=55.79  Aligned_cols=89  Identities=24%  Similarity=0.309  Sum_probs=61.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchHHHHHHhHc--CCCc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDLDAALKRWF--PQGI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~   70 (180)
                      +|+.++|+||++++|.+.++.+...|++|+.+++++++                       +.+++...+.+..  -|++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999998888999999999987654                       2222222222221  1479


Q ss_pred             cEEEeCCCh--h--h-----------------------HHHHHHhh--ccCCEEEEEeccccc
Q 041355           71 DIYFENVGG--K--M-----------------------LDAVLLNM--RLRGRIAVSSIISQY  104 (180)
Q Consensus        71 d~~~d~~g~--~--~-----------------------~~~~~~~l--~~~G~~v~~~~~~~~  104 (180)
                      |+++++.|-  .  .                       .+.+++.+  +.+|+++++++..+.
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~  148 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGI  148 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc
Confidence            999998872  0  0                       13344544  346899999877653

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.84  E-value=5.8e-05  Score=53.92  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.+.++.+...|++|++++++.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            57889999999999999999888899999999988654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.83  E-value=7.1e-05  Score=54.14  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            57899999999999999999888899999999988654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.82  E-value=9.4e-05  Score=53.04  Aligned_cols=37  Identities=11%  Similarity=0.156  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCch--HHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGA--VGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~--vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|.  +|..+++.+...|++|+.+++++.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER   44 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchH
Confidence            4789999999955  999988888888999999988753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.82  E-value=6.3e-05  Score=54.52  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+++||+||++++|..+++.+...|++|+.++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            57899999999999999999888899999998876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.81  E-value=0.00014  Score=51.20  Aligned_cols=86  Identities=22%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-C----------cchH--HHHHHhHcCCCccEEEeCCChhh-
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-E----------EPDL--DAALKRWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-~----------~~~~--~~~~~~~~~~~~d~~~d~~g~~~-   81 (180)
                      -.+|+|+||+|.+|..+++.+...| ++|+++++++++ .          ..|+  .+.+.+... ++|++|.+.+... 
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ-GQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT-TCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc-CCCEEEEcCCCCch
Confidence            3579999999999999999998899 799999988654 0          0011  123333322 5899999888642 


Q ss_pred             ---HHHHHHhhcc--CCEEEEEecccc
Q 041355           82 ---LDAVLLNMRL--RGRIAVSSIISQ  103 (180)
Q Consensus        82 ---~~~~~~~l~~--~G~~v~~~~~~~  103 (180)
                         ...++..++.  .++++.+++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEeccee
Confidence               3344555543  368998877553

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.80  E-value=5.3e-05  Score=54.83  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|...++.+...|++|+.++++.+.
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   68 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDA   68 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            47899999999999999998888899999999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.80  E-value=0.00018  Score=49.96  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcCCCccEEEeCCChh------
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFPQGIDIYFENVGGK------   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~~~~d~~~d~~g~~------   80 (180)
                      +|+|+||+|.+|..+++.+...|.+|+++++++++            +-.+..+.+.+... ++|++|.|+|..      
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~-~~d~vi~~ag~~~~~~~~   80 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH-GMDAIINVSGSGGKSLLK   80 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTT-TCSEEEECCCCTTSSCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHc-CCCEEEECCcCCCCCcEe
Confidence            58999999999999999998889999999998764            11111234444443 699999998842      


Q ss_pred             ----hHHHHHHhhccC--CEEEEEecccc
Q 041355           81 ----MLDAVLLNMRLR--GRIAVSSIISQ  103 (180)
Q Consensus        81 ----~~~~~~~~l~~~--G~~v~~~~~~~  103 (180)
                          ....+++.++..  ++++.+++...
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           81 VDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             EeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence                123444444433  58888877543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.79  E-value=7.7e-05  Score=53.78  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++++.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   47 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETD   47 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            47899999999999999999888899999999988764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.79  E-value=6.8e-05  Score=54.58  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcCCCccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~~~~d~~~d~   76 (180)
                      .|.+++|+||+|++|.++++.+...|++|++++++.++                   .+.+-...+.+.. +++|+++.+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~-~~iD~lv~n   93 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV-SGADVLINN   93 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC-CCEEEEEEC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc-CCCCEEEEC
Confidence            57899999999999999999888899999999988543                   1122222222222 579999998


Q ss_pred             CC
Q 041355           77 VG   78 (180)
Q Consensus        77 ~g   78 (180)
                      .|
T Consensus        94 Ag   95 (291)
T 3rd5_A           94 AG   95 (291)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.79  E-value=0.0001  Score=52.89  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|...++.+...|++|++++++.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   41 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCH
Confidence            478899999999999999998888999999998864

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.79  E-value=0.00015  Score=49.73  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +++|+||+|++|..+++.+. .|++|++++++.+.      +.+++.+.+.+.  +++|+++.+.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            79999999999999998888 89999999987643      223333333333  57999999987

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.77  E-value=3.7e-05  Score=54.71  Aligned_cols=63  Identities=22%  Similarity=0.297  Sum_probs=46.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+.                    +.+++...+.+..  .+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            57899999999999999999999999999999887542                    2222222222221  1479999


Q ss_pred             EeCCC
Q 041355           74 FENVG   78 (180)
Q Consensus        74 ~d~~g   78 (180)
                      +.+.|
T Consensus        85 v~nAg   89 (247)
T 3rwb_A           85 VNNAS   89 (247)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.77  E-value=0.0001  Score=53.83  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             CCCEEEEecCCch--HHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchHHHHHHhHc--CCC
Q 041355           16 KGEYVYVSAASGA--VGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDLDAALKRWF--PQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~--vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~~~~~~~~~--~~~   69 (180)
                      .|++++|+||+|+  +|.++++.+...|++|+.+++++..                      +.+++...+.+..  .++
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGK  109 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999965  9999998888899999999887431                      2222222222221  247


Q ss_pred             ccEEEeCCChh---------------h---------------HHHHHHhhccCCEEEEEecccc
Q 041355           70 IDIYFENVGGK---------------M---------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        70 ~d~~~d~~g~~---------------~---------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      +|+++.+.|-.               .               ...+++.++++|+++.+++...
T Consensus       110 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~  173 (293)
T 3grk_A          110 LDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGA  173 (293)
T ss_dssp             CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred             CCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhh
Confidence            99999998721               0               1233445567899999987654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.77  E-value=9.1e-05  Score=53.21  Aligned_cols=63  Identities=19%  Similarity=0.277  Sum_probs=46.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++++.            +.+++...+.+..  .+++|+++.+.|
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            46889999999999999999888899999999887642            2222322222221  147999999987

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.75  E-value=0.00026  Score=49.22  Aligned_cols=85  Identities=11%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             CEEEEecCCchHHHHHHHHHH-HcCCEEEEEeCCCC-C-C------------cchH--HHHHHhHcCCCccEEEeCCChh
Q 041355           18 EYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKE-K-E------------EPDL--DAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak-~~g~~vi~~~~~~~-~-~------------~~~~--~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      ++|+|+||+|.+|..+++.+. ..|++|++++++++ + .            ..|+  .+.+.+... ++|+++.+.|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT-NAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT-TCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc-CCCEEEEcCCCC
Confidence            469999999999999888877 89999999999866 2 0            0011  123333322 689999999853


Q ss_pred             h--HHHHHHhhcc--CCEEEEEecccc
Q 041355           81 M--LDAVLLNMRL--RGRIAVSSIISQ  103 (180)
Q Consensus        81 ~--~~~~~~~l~~--~G~~v~~~~~~~  103 (180)
                      .  ...+++.++.  .++++.+++...
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            2  3344455543  368998877654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.75  E-value=7e-05  Score=54.04  Aligned_cols=64  Identities=17%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchH---HHHHHhHcCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDL---DAALKRWFPQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~---~~~~~~~~~~~   69 (180)
                      .|.+++|+||+|++|.++++.+...|++|++++++++.                       +.+++   .+.+.+..+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999988899999999887532                       11122   22233333368


Q ss_pred             ccEEEeCCCh
Q 041355           70 IDIYFENVGG   79 (180)
Q Consensus        70 ~d~~~d~~g~   79 (180)
                      +|+++.+.|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999873

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.75  E-value=3.8e-05  Score=54.65  Aligned_cols=63  Identities=29%  Similarity=0.473  Sum_probs=46.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++.                    +.+++...+.+..  .+++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999988899999999987643                    1222222222221  1479999


Q ss_pred             EeCCC
Q 041355           74 FENVG   78 (180)
Q Consensus        74 ~d~~g   78 (180)
                      +.+.|
T Consensus        88 v~nAg   92 (248)
T 3op4_A           88 VNNAG   92 (248)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.75  E-value=4.5e-05  Score=54.37  Aligned_cols=87  Identities=16%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcC--CCccEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFP--QGIDIYFE   75 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~d~~~d   75 (180)
                      .++|||+||++++|.+.++.+-..|++|+.++++++.                   +.++....+.+...  +++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999999999999999999987553                   22222222222221  47999999


Q ss_pred             CCChh-----------h---------------HHHHHHhh-ccCCEEEEEecccc
Q 041355           76 NVGGK-----------M---------------LDAVLLNM-RLRGRIAVSSIISQ  103 (180)
Q Consensus        76 ~~g~~-----------~---------------~~~~~~~l-~~~G~~v~~~~~~~  103 (180)
                      +.|..           .               .+.+++.+ +.+|+++++++..+
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~  136 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRA  136 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            88731           0               12233444 46799999987664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.74  E-value=5.3e-05  Score=53.61  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchH------------HHHHHhHc-CC-Cc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDL------------DAALKRWF-PQ-GI   70 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~------------~~~~~~~~-~~-~~   70 (180)
                      +.....+.++++||..| +| .|..+..+++. +.+|++++.+++.   .....            ...+.+.. .+ ++
T Consensus        83 ~~~~~~~~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  159 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFG-TG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIF  159 (248)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCB
T ss_pred             HHHhcCCCCCCEEEEeC-CC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcc
Confidence            33566788999999999 66 69999999998 7899999887553   00000            00011112 23 79


Q ss_pred             cEEEeCCChh--hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGGK--MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+++...+..  .+..+.+.|+++|+++....
T Consensus       160 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          160 HAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             SEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             cEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9999877643  78888999999999988754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.73  E-value=8.1e-05  Score=53.25  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   44 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   44 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999888889999999988753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=0.00026  Score=49.32  Aligned_cols=84  Identities=17%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-C---------cchH--HHHHHhHcCCCccEEEeCCChh-----
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-E---------EPDL--DAALKRWFPQGIDIYFENVGGK-----   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~---------~~~~--~~~~~~~~~~~~d~~~d~~g~~-----   80 (180)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++++ .         ..|+  .+.+.+... ++|++|.|+|..     
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~a~~~~~~~~   83 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK-GADAVISAFNPGWNNPD   83 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT-TCSEEEECCCC------
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhc-CCCEEEEeCcCCCCChh
Confidence            579999999999999999999899999999998654 0         0011  123333332 589999998742     


Q ss_pred             -------hHHHHHHhhccC--CEEEEEeccc
Q 041355           81 -------MLDAVLLNMRLR--GRIAVSSIIS  102 (180)
Q Consensus        81 -------~~~~~~~~l~~~--G~~v~~~~~~  102 (180)
                             ....+++.++..  .+++.+++..
T Consensus        84 ~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           84 IYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence                   123344455443  4888887654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.73  E-value=0.0001  Score=52.69  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+++++|+||+|++|.+.++.+...|++|++++++.++            +.+++...+.+..  .+++|+++.+.|
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg   96 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAG   96 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47889999999999999999888899999999987654            2222222222221  247999999876

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.72  E-value=5.4e-05  Score=54.17  Aligned_cols=64  Identities=19%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|+++||+||+|++|..+++.+...|++|+.++++.+.                    +.+++...+.+..  .+++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999998888889999999887543                    2222222222221  2479999


Q ss_pred             EeCCCh
Q 041355           74 FENVGG   79 (180)
Q Consensus        74 ~d~~g~   79 (180)
                      +.+.|-
T Consensus        87 v~~Ag~   92 (259)
T 4e6p_A           87 VNNAAL   92 (259)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.72  E-value=0.00012  Score=52.36  Aligned_cols=38  Identities=13%  Similarity=0.067  Sum_probs=33.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+.
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~   48 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   48 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHh
Confidence            47899999999999999999888899999999988653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.72  E-value=4.4e-05  Score=54.95  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   39 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQA   39 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999999999999999988889999999998754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.72  E-value=9.1e-05  Score=52.56  Aligned_cols=63  Identities=22%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcCCCccEEEe
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFPQGIDIYFE   75 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~~~~d~~~d   75 (180)
                      .++++++|+||+|++|..+++.+...|++|+.++++.++                   .+.+....+.+.. +++|+++.
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~li~   90 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT-SNLDILVC   90 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC-SCCSEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc-CCCCEEEE
Confidence            578899999999999999998888889999999987543                   1111122222222 47999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus        91 ~Ag   93 (249)
T 3f9i_A           91 NAG   93 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.72  E-value=7.4e-05  Score=53.79  Aligned_cols=63  Identities=24%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------Ccch-HHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEPD-LDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~~-~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+.           .+.+ ....+.+..  .+++|+++.+.|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg  103 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAG  103 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            57899999999999999999888899999999887654           1111 221222211  147999999987

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.72  E-value=7e-05  Score=54.15  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=33.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+++++|+||+|++|..+++.+...|++|++++++.+.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   41 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEA   41 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            46889999999999999999888899999999988654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.72  E-value=4.3e-05  Score=54.65  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+++||+||++++|.++++.+...|++|+.++++.+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKE   41 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999988889999999988754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.72  E-value=5.3e-05  Score=55.52  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|+.++++.+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~   66 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQP   66 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999988889999999998754

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.72  E-value=5.1e-05  Score=54.43  Aligned_cols=63  Identities=16%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHc--CCCccEEEe
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWF--PQGIDIYFE   75 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~--~~~~d~~~d   75 (180)
                      .|++++|+||++++|.++++.+...|++|++++++.+.                  +.+++...+.+..  .+++|+++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~  105 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH  105 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            46789999999999999999888889999999998754                  1122222222221  247999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus       106 nAg  108 (260)
T 3gem_A          106 NAS  108 (260)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.70  E-value=0.00013  Score=52.60  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            5789999999999999999888889999999998864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.70  E-value=5e-05  Score=54.67  Aligned_cols=64  Identities=20%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc--CCCccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF--PQGIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~d~~~d~   76 (180)
                      .+++++|+||+|++|..+++.+...|++|+.++++.++                 +.+++...+.+..  .+++|+++.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn   94 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNN   94 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence            46889999999999999999888899999999987543                 2222222222221  1479999999


Q ss_pred             CCh
Q 041355           77 VGG   79 (180)
Q Consensus        77 ~g~   79 (180)
                      .|.
T Consensus        95 Ag~   97 (266)
T 3p19_A           95 AGM   97 (266)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            873

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.70  E-value=7.1e-05  Score=53.06  Aligned_cols=37  Identities=30%  Similarity=0.342  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|...++.+...|++|+.++++.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~   40 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQA   40 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999988888888999999998754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.69  E-value=6.1e-05  Score=53.60  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|..+++.+...|++|+.++++.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~   44 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAE   44 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5789999999999999999988889999999998754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.69  E-value=5.3e-05  Score=54.31  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.++||+||+|++|..+++.+...|++|+.++++.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   64 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVE   64 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999998888888999999998754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.69  E-value=6.1e-05  Score=54.53  Aligned_cols=63  Identities=16%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.++++.+...|++|++++++.+.                    +.+++...+.+..  .+++|++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47899999999999999999888899999999987543                    2222222222221  1479999


Q ss_pred             EeCCC
Q 041355           74 FENVG   78 (180)
Q Consensus        74 ~d~~g   78 (180)
                      +.+.|
T Consensus       106 v~nAg  110 (277)
T 4dqx_A          106 VNNAG  110 (277)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99988

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.69  E-value=5.7e-05  Score=54.72  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..++++||+||++++|.++++.+...|++|+.++++.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   59 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAK   59 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999998888888999999998754

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.69  E-value=0.00015  Score=51.52  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      .+.+++|+||+|++|...++.+...|++|++++++.+.             +.+++...+.+..  .+++|+++.+.|
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag   83 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAG   83 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            46889999999999999999988899999999887542             2222322222221  247999999987

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.68  E-value=6.4e-05  Score=53.72  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|..+++.+...|++|+.++++.+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   44 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKA   44 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4789999999999999999988889999999998864

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.68  E-value=5.5e-05  Score=53.42  Aligned_cols=36  Identities=14%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+++|+||++++|..+++.+...|++|+.++++.+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~   38 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ   38 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999888889999999998764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.67  E-value=7.5e-05  Score=53.79  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|..+++.+...|++|+++++++.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   64 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA   64 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            5789999999999999988888889999999998643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.67  E-value=8.8e-05  Score=54.19  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   77 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRE   77 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            57899999999999999999888899999999988653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.67  E-value=5.8e-05  Score=53.97  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|...++.+...|++|+.++++.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   47 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSE   47 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999988888888999999998754

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.67  E-value=0.00016  Score=51.08  Aligned_cols=62  Identities=23%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhHcC--CCccEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRWFP--QGIDIYFENV   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~~~--~~~d~~~d~~   77 (180)
                      +|++++|+||+|++|...++.+...|++|++++++.++                +-.+ .+.+.+...  +++|+++.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGD-WEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHTTCCCCCEEEECC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC-HHHHHHHHHHcCCCCEEEECC
Confidence            47899999999999999999998899999999887432                0001 122333222  3799999998


Q ss_pred             C
Q 041355           78 G   78 (180)
Q Consensus        78 g   78 (180)
                      |
T Consensus        85 g   85 (244)
T 3d3w_A           85 A   85 (244)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.66  E-value=7.5e-05  Score=54.24  Aligned_cols=37  Identities=11%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++++|+||++++|.++++.+...|++|+.++++.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRT   63 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5788999999999999999988889999999998754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.66  E-value=6.9e-05  Score=54.33  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAE   40 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            4789999999999999999988889999999998754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.65  E-value=7.4e-05  Score=53.62  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -.|++++|+||++++|...++.+...|++|+.++++.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVE   46 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            35789999999999999999888889999999998754

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.65  E-value=7.8e-05  Score=53.19  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   40 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999998889999999988753

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.65  E-value=6.1e-05  Score=54.34  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|..+++.+...|++|+.++++.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA   63 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4788999999999999999888888999999998754

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.65  E-value=5.5e-05  Score=54.91  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+++||+||++++|.++++.+...|++|+.++++.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   68 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPD   68 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999888889999999998764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.65  E-value=6.9e-05  Score=54.21  Aligned_cols=37  Identities=14%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   62 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLP   62 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988888999999998754

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.64  E-value=0.00015  Score=51.51  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            46789999999999999998888899999999987

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.64  E-value=6.4e-05  Score=54.45  Aligned_cols=64  Identities=22%  Similarity=0.308  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.++++.+...|++|++++++.+.                    +.+++...+.+..  .+++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            47889999999999999998888889999999987542                    1222222222221  1479999


Q ss_pred             EeCCCh
Q 041355           74 FENVGG   79 (180)
Q Consensus        74 ~d~~g~   79 (180)
                      +.+.|.
T Consensus       108 vnnAg~  113 (277)
T 3gvc_A          108 VANAGV  113 (277)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.63  E-value=0.00021  Score=54.32  Aligned_cols=86  Identities=12%  Similarity=0.081  Sum_probs=61.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc---------ch------HHH------------
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE---------PD------LDA------------   60 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~---------~~------~~~------------   60 (180)
                      ++.+|+|.| .|.+|+.++++++.+|++|++.++++.+        ..         ++      +..            
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            578999999 7999999999999999999999888764        00         00      111            


Q ss_pred             HHHhHcCCCccEEEeCCCh-----h--hHHHHHHhhccCCEEEEEecccc
Q 041355           61 ALKRWFPQGIDIYFENVGG-----K--MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        61 ~~~~~~~~~~d~~~d~~g~-----~--~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      .+.+.. .+.|+++.|+..     +  .-...++.++++..++.++...+
T Consensus       268 ~l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~G  316 (405)
T 4dio_A          268 LVAEHI-AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERG  316 (405)
T ss_dssp             HHHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGT
T ss_pred             HHHHHh-cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCC
Confidence            111111 168999999632     1  23677889999999999976443

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.63  E-value=0.00015  Score=51.90  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=31.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.++++.+...|++|+.+++.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   42 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGA   42 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            578999999999999999998888899999885543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.62  E-value=7.2e-05  Score=53.67  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|...++.+...|++|+.++++.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   45 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTA   45 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999988753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.62  E-value=5.7e-05  Score=54.80  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   43 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGN   43 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999988889999999888754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.62  E-value=9.6e-05  Score=52.49  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|.++++.+...|++|+.++++.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVE   42 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4688999999999999999988888999999988743

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.62  E-value=0.00013  Score=52.82  Aligned_cols=35  Identities=9%  Similarity=0.059  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+++++|+||++++|.++++.+...|++|++++++
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   62 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG   62 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            57889999999999999999888899999998864

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=8.7e-05  Score=52.88  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ   42 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5788999999999999998888888999999998753

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.61  E-value=7e-05  Score=54.09  Aligned_cols=37  Identities=22%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||++++|.++++.+...|++|+.++++.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLD   63 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5788999999999999999888889999999988754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.61  E-value=8.6e-05  Score=54.87  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.++||+||+|++|..+++.+...|++|+.++++.+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~   43 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQD   43 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999999999998888889999999998864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.61  E-value=0.00019  Score=52.15  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=33.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|..+++.+...|++|+.++++.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4789999999999999988888888999999999876

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.61  E-value=0.0001  Score=52.35  Aligned_cols=63  Identities=13%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHc--CCCccEEEe
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWF--PQGIDIYFE   75 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~--~~~~d~~~d   75 (180)
                      .+.+++|+||+|++|...++.+...|++|+++++++++                  +.+++...+.+..  .+++|+++.
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999999999999999888899999999887532                  1122222222221  147999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus        84 ~Ag   86 (245)
T 1uls_A           84 YAG   86 (245)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.61  E-value=7.3e-05  Score=53.75  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   55 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVS   55 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999998743

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.60  E-value=5.3e-05  Score=53.29  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++++|+||+|++|...++.+...|++|+.++++.+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~   37 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVD   37 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3678999999999999999999899999999998754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.60  E-value=0.0001  Score=52.80  Aligned_cols=37  Identities=22%  Similarity=0.133  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|...++.+...|++|++++++.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   42 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4788999999999999999888888999999988753

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.60  E-value=0.00014  Score=51.66  Aligned_cols=36  Identities=8%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|...++.+...|++|+++++++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            478899999999999999998888999999999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.60  E-value=0.0001  Score=53.25  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||+|++|..+++.+...|++|++++++++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   57 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   57 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999988889999999988743

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.59  E-value=8.5e-05  Score=53.36  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|+.++++++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4678999999999999999988889999999998753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.59  E-value=6.5e-05  Score=54.21  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+++||+||++++|.++++.+...|++|+.++++.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~   61 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPS   61 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999888754

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.58  E-value=0.00011  Score=52.95  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|...++.+...|++|++++++++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   44 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999988753

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.58  E-value=0.0013  Score=49.06  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKL--AGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~--~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+..  .|++|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            467999999999999998888877  8999999998654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.58  E-value=0.00012  Score=52.73  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.++++.+...|++|+.+++++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~   62 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS   62 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578899999999999999998888999999988843

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.58  E-value=0.00012  Score=52.51  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|...++.+...|++|+++++++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999999999999998888999999998874

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.57  E-value=0.00012  Score=52.50  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++|+.++++.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   41 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999999999999999988999999998874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.57  E-value=0.0005  Score=47.52  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHcCCCccEEEeCCChh---
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWFPQGIDIYFENVGGK---   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~~~d~~g~~---   80 (180)
                      +|+|+||+|.+|..+++.+...|.+|+++++++++               .+++.     +.. +++|+++.|+|..   
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-----~~~-~~~d~vi~~ag~~~~~   75 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-----SDL-SDQNVVVDAYGISPDE   75 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-----HHH-TTCSEEEECCCSSTTT
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh-----hhh-cCCCEEEECCcCCccc
Confidence            58999999999999999999999999999998643               11111     111 3689999999752   


Q ss_pred             ------hHHHHHHhhccC--CEEEEEeccc
Q 041355           81 ------MLDAVLLNMRLR--GRIAVSSIIS  102 (180)
Q Consensus        81 ------~~~~~~~~l~~~--G~~v~~~~~~  102 (180)
                            ....++..++..  ++++.+++..
T Consensus        76 ~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           76 AEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             TTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             cchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence                  224455566543  6888887654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.57  E-value=0.00012  Score=52.50  Aligned_cols=37  Identities=22%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   43 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGE   43 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4788999999999999999988889999999988753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.56  E-value=0.00012  Score=52.11  Aligned_cols=36  Identities=14%  Similarity=0.095  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999999999999998888899999998874

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.56  E-value=0.00021  Score=51.30  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|...++.+...|++|+.++++.+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   45 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREE   45 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999888889999999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.56  E-value=0.00018  Score=52.52  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=60.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH---------HHHHhHcCCCccEEEeCCChhh-HHH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD---------AALKRWFPQGIDIYFENVGGKM-LDA   84 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~d~~g~~~-~~~   84 (180)
                      -.|++|+|.| .|.+|..+++.++.+|++|++.+++.++. +...         ..+.+.. .+.|+++.|+.... -..
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~l~~~l-~~aDvVi~~~p~~~i~~~  229 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLL-ARIAEMGMEPFHISKAAQEL-RDVDVCINTIPALVVTAN  229 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTSEEEEGGGHHHHT-TTCSEEEECCSSCCBCHH
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHHCCCeecChhhHHHHh-cCCCEEEECCChHHhCHH
Confidence            3689999999 89999999999999999999988875320 0000         1111211 26899999987542 235


Q ss_pred             HHHhhccCCEEEEEec
Q 041355           85 VLLNMRLRGRIAVSSI  100 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~  100 (180)
                      .+..+++++.++.++.
T Consensus       230 ~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          230 VLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             HHHHSCTTCEEEECSS
T ss_pred             HHHhcCCCCEEEEecC
Confidence            6678899999999875

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.55  E-value=0.0003  Score=49.45  Aligned_cols=62  Identities=19%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------CcchHHHHHHhH-cCCCccEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEPDLDAALKRW-FPQGIDIYFENVG   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~~~~~~~~~~-~~~~~d~~~d~~g   78 (180)
                      +.+++|+||+|++|...++.+...|++|++++++++.           +.+++.+.+.+. ..+++|+++.+.|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            5789999999999999888888889999999887642           222333333322 1137999999876

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.55  E-value=0.00014  Score=51.74  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      -.+++++||+||++++|..+++.+...|++|+.+++.
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~   46 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGP   46 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567899999999999999888888889999988844

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.55  E-value=0.00017  Score=52.32  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .++++||+||++++|..+++.+...|++|+.++++
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999999888999999999884

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.54  E-value=0.00013  Score=52.82  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPD   46 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999988889999999988754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.54  E-value=0.00014  Score=52.47  Aligned_cols=37  Identities=22%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   66 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   66 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHH
Confidence            4688999999999999999988888999999988753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.54  E-value=0.00014  Score=51.79  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++.+
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   47 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEE   47 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999888889999999998754

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.54  E-value=0.00012  Score=52.34  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++.+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   49 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQE   49 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999988889999999988753

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.54  E-value=0.00019  Score=51.16  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4678999999999999999888889999999888753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.53  E-value=0.0012  Score=44.98  Aligned_cols=84  Identities=14%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcCCCccEEEeCCChhh--
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFPQGIDIYFENVGGKM--   81 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~~~~d~~~d~~g~~~--   81 (180)
                      .+|+|+||+|.+|..+++.+...|.+|+++++++++              +-.+ .+.+.+... ++|+++.+.|...  
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~-~~d~vi~~a~~~~~~   81 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQ-AADVDKTVA-GQDAVIVLLGTRNDL   81 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTS-HHHHHHHHT-TCSEEEECCCCTTCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCC-HHHHHHHHc-CCCEEEECccCCCCC
Confidence            689999999999999999888889999999987543              1011 123333332 5899999987321  


Q ss_pred             ---------HHHHHHhhcc--CCEEEEEecccc
Q 041355           82 ---------LDAVLLNMRL--RGRIAVSSIISQ  103 (180)
Q Consensus        82 ---------~~~~~~~l~~--~G~~v~~~~~~~  103 (180)
                               ...+++.++.  .++++.+++...
T Consensus        82 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~  114 (206)
T 1hdo_A           82 SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL  114 (206)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             CccchHHHHHHHHHHHHHHhCCCeEEEEeeeee
Confidence                     2334444433  368888876543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.53  E-value=0.00012  Score=51.78  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|..+++.+...|++|+.++++.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~   49 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEA   49 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHH
Confidence            5789999999999999999988889999999998743

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.53  E-value=0.00031  Score=49.48  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHcC--CCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWFP--QGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~~--~~~d~~~d~~g   78 (180)
                      ++.+++|+||+|++|...++.+...|++|++++++.+.               -+-.-.+.+.+...  +++|+++.+.|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            46789999999999999999988899999999887432               00000122333222  36899999987

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.53  E-value=0.00014  Score=52.24  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|..+++.+...|++|++++++.
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578899999999999999998888999999998874

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.53  E-value=0.00012  Score=51.91  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .|.+++|+||+|++|...++.+...|++|+++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r   36 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYA   36 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4678999999999999999988889999999988

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.52  E-value=0.00063  Score=49.15  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-C----------cchH--HHHHHhHcCCCccEEEeCCChh----
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-E----------EPDL--DAALKRWFPQGIDIYFENVGGK----   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-~----------~~~~--~~~~~~~~~~~~d~~~d~~g~~----   80 (180)
                      +|||+||+|.+|..+++.+... |.+|+++++++++ .          ..|+  .+.+.+... ++|.+|.|.+..    
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~-~~d~vi~~a~~~~~~~   80 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK-GMDTVVFIPSIIHPSF   80 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT-TCSEEEECCCCCCSHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh-CCCEEEEeCCCCccch
Confidence            4899999999999998888777 8899999998654 0          0111  223444333 689999998741    


Q ss_pred             ----hHHHHHHhhccC--CEEEEEeccc
Q 041355           81 ----MLDAVLLNMRLR--GRIAVSSIIS  102 (180)
Q Consensus        81 ----~~~~~~~~l~~~--G~~v~~~~~~  102 (180)
                          ....++..++..  ++++.+++..
T Consensus        81 ~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           81 KRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                223444555443  5888887754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.52  E-value=0.00015  Score=52.40  Aligned_cols=35  Identities=11%  Similarity=0.208  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+++||+||++++|.++++.+...|++|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999888899999999876

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.52  E-value=0.00025  Score=50.69  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   40 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLD   40 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999988889999999988754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.52  E-value=0.00014  Score=51.83  Aligned_cols=36  Identities=14%  Similarity=0.105  Sum_probs=32.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +++++|+||+|++|..+++.+...|++|++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   37 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   37 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999988889999999988753

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.52  E-value=0.00022  Score=51.50  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||++++|.++++.+...|++|+++++++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   65 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD   65 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH
Confidence            478999999999999999988888999999988654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.52  E-value=0.00015  Score=51.82  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||++++|..+++.+...|++|+.+++++.
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~   42 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT   42 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh
Confidence            4678999999999999999888888999999877653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.51  E-value=0.00014  Score=52.04  Aligned_cols=37  Identities=16%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~   49 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   49 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5688999999999999999988889999999988743

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.51  E-value=0.00016  Score=51.79  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+|++|..+++.+...|++|+++++++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999999999999998888999999998864

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.51  E-value=0.00017  Score=51.09  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|...++.+...|++|+++++.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~   38 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS   38 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467899999999999999998888999999887754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.51  E-value=0.00015  Score=51.98  Aligned_cols=36  Identities=11%  Similarity=0.100  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+|++|...++.+...|++|++++++.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999999999999888888899999998864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.51  E-value=0.00035  Score=50.51  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|.++++.+...|++|+.++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999999999999999886

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.51  E-value=9.2e-05  Score=57.51  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             HHHHHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHH--------hHcCCCccEEEeCC
Q 041355            7 LIILVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALK--------RWFPQGIDIYFENV   77 (180)
Q Consensus         7 ~l~~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~d~~   77 (180)
                      ++.+.... -.|++++|+| .|++|..+++.++..|++|+++++++.+    ......        +.....+|+++++.
T Consensus       254 gi~r~tg~~L~GKtVvVtG-aGgIG~aiA~~Laa~GA~Viv~D~~~~~----a~~Aa~~g~dv~~lee~~~~aDvVi~at  328 (488)
T 3ond_A          254 GLMRATDVMIAGKVAVVAG-YGDVGKGCAAALKQAGARVIVTEIDPIC----ALQATMEGLQVLTLEDVVSEADIFVTTT  328 (488)
T ss_dssp             HHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHTTCEECCGGGTTTTCSEEEECS
T ss_pred             HHHHHcCCcccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHhCCccCCHHHHHHhcCEEEeCC
Confidence            44344443 3799999999 6699999999999999999988775432    111111        01112689999999


Q ss_pred             Chh-hH-HHHHHhhccCCEEEEEecc
Q 041355           78 GGK-ML-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        78 g~~-~~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      |.. .+ ...+..+++++.++++|..
T Consensus       329 G~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          329 GNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             CChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            865 33 3467888999999888764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.51  E-value=0.00029  Score=50.37  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|..+++.+...|++|+++++++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999999999988888899999998874

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.51  E-value=0.00023  Score=50.77  Aligned_cols=37  Identities=16%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~   49 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   49 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcch
Confidence            4678999999999999999888888999999998643

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.50  E-value=0.00015  Score=52.50  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|.++++.+...|++|++++++.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   63 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDA   63 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999999999999998888999999998864

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.50  E-value=0.00037  Score=49.29  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+++++|+||++++|...++.+.. .|++|+.++++++.             +.+++...+.....+++|+++.+.|-
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg~   80 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGI   80 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            467899999999999987766655 78899988887662             22233333322223489999999884

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.50  E-value=0.00013  Score=52.23  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~   50 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+ .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            57899999999999999999988999999887 554

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.50  E-value=0.00011  Score=52.21  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+..+.+-..|++|+.++++..
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~   44 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP   44 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence            5889999999999999999999999999999998754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.50  E-value=0.00016  Score=51.61  Aligned_cols=61  Identities=16%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHH---HHHHhHcCCCccEEEe
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLD---AALKRWFPQGIDIYFE   75 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~d~~~d   75 (180)
                      .+++++|+||++++|.+.++.+...|++|++++++.+.                 +.+++.   +.+.+  .+++|+++.
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~g~id~lv~   85 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAET--MGTLRIVVN   85 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHH--HSCEEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hCCCCEEEE
Confidence            46789999999999999998888889999999886543                 122222   22222  257999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus        86 nAg   88 (257)
T 3tl3_A           86 CAG   88 (257)
T ss_dssp             CGG
T ss_pred             CCC
Confidence            988

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.50  E-value=0.00022  Score=51.54  Aligned_cols=37  Identities=24%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++.+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~   65 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAE   65 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4678999999999999998888889999999998754

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.49  E-value=0.00013  Score=52.01  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|...++.+...|++|++++++.+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   41 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999888888999999988743

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.49  E-value=0.00032  Score=49.52  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+.+++|+||+|++|..+++.+...|++|+++++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~   37 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGS   37 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            4678999999999999999988889999998844

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.49  E-value=0.00016  Score=50.78  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~   40 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK   40 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3578999999999999999988889999999988743

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.49  E-value=0.00034  Score=49.87  Aligned_cols=63  Identities=17%  Similarity=0.189  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc--CCCccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF--PQGIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~d~~~d~   76 (180)
                      .|++++|+||+|++|...++.+...|++|++++++++.                 +.+++...+.+..  .+++|+++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~   84 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   84 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            46889999999999999999888899999999887542                 1112222222211  1479999999


Q ss_pred             CC
Q 041355           77 VG   78 (180)
Q Consensus        77 ~g   78 (180)
                      .|
T Consensus        85 Ag   86 (256)
T 2d1y_A           85 AA   86 (256)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.48  E-value=0.00027  Score=51.63  Aligned_cols=37  Identities=11%  Similarity=0.026  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|  ++|..+++.+...|++|++++++++
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            478999999987  9999988888888999999998864

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.48  E-value=0.00021  Score=50.07  Aligned_cols=61  Identities=13%  Similarity=0.105  Sum_probs=43.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      ++++|+||++++|..+++.+...|++|+.++++++.                   .+++-...+.+.....+|+++.+.|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            368999999999999999888899999999987643                   1222222333333334599999887

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.48  E-value=0.00024  Score=50.87  Aligned_cols=39  Identities=8%  Similarity=0.041  Sum_probs=33.8

Q ss_pred             CCCCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..++++++|+||+  +++|..+++.+...|++|+.+++++.
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~   51 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR   51 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh
Confidence            3468899999998  99999998888888999999988743

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.48  E-value=0.00018  Score=52.03  Aligned_cols=36  Identities=11%  Similarity=0.192  Sum_probs=32.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      -.|++++|+||++++|..+++.+...|++|+++++.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~   48 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDIC   48 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecc
Confidence            357899999999999999999888899999998873

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.48  E-value=0.00033  Score=51.91  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+++++|+||+|++|...++.+...|++|++++++
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~   38 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRD   38 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCc
Confidence            36789999999999999999998999999998886

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.47  E-value=0.00013  Score=51.72  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   45 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478899999999999999988888899999998874

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.47  E-value=0.00027  Score=49.81  Aligned_cols=62  Identities=18%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHc--CCCccEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWF--PQGIDIYFENVG   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~--~~~~d~~~d~~g   78 (180)
                      +++++|+||+|++|...++.+...|++|+++++++++              .++++...+.+..  .+++|+++.+.|
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~Ag   79 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAAA   79 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5789999999999999999888899999999987542              1133333222221  147999999887

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.47  E-value=0.00017  Score=51.64  Aligned_cols=36  Identities=14%  Similarity=-0.044  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+.. .|++|++++++.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~   39 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   39 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCCh
Confidence            578999999999999998887777 899999999874

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.46  E-value=0.00038  Score=49.29  Aligned_cols=62  Identities=18%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .|++++|+||+|++|...++.+...|++|+++++++++                 .+++-.+.+.+.. +++|+++.+.|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHh-CCCCEEEECCc
Confidence            47889999999999999999888899999999887432                 1111122222222 47999999887

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.46  E-value=0.00022  Score=52.69  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|.+.++.+...|++|++++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            47889999999999999988888889999999876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.46  E-value=0.0002  Score=51.70  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|.+.++.+...|++|++++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~   44 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIA   44 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEecc
Confidence            57899999999999999999888899999998874

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.46  E-value=0.0002  Score=51.95  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|.+.++.+...|++|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999888899999998876

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.45  E-value=0.00017  Score=51.04  Aligned_cols=37  Identities=11%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++++
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~   41 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999888889999999988743

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.45  E-value=0.00027  Score=50.98  Aligned_cols=37  Identities=30%  Similarity=0.287  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||+|++|..++..+...|++|+.++++.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999988888888999999988765

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.45  E-value=0.00024  Score=50.53  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHcC--CCccEEEe
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWFP--QGIDIYFE   75 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~~--~~~d~~~d   75 (180)
                      .+++|+||+|++|.++++.+...|++|+.++++.++                    +.+++...+.+...  +++|+++.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            368999999999999998888899999999887542                    11222223333222  37999999


Q ss_pred             CCC
Q 041355           76 NVG   78 (180)
Q Consensus        76 ~~g   78 (180)
                      +.|
T Consensus        81 nAg   83 (248)
T 3asu_A           81 NAG   83 (248)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.44  E-value=0.00018  Score=51.61  Aligned_cols=37  Identities=38%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCc-hHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASG-AVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g-~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+| ++|...++.+...|++|+.++++.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            578999999976 8999998888888999999988754

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.44  E-value=0.00021  Score=52.19  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|.++++.+...|++|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            47899999999999999999888899999998876

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.43  E-value=0.0026  Score=47.20  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4679999999999999999999889999999998754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.43  E-value=0.00035  Score=53.52  Aligned_cols=93  Identities=14%  Similarity=0.093  Sum_probs=62.1

Q ss_pred             HHHHHHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc----chH-HHHHHhHcCCCccEEEeCCCh
Q 041355            6 NLIILVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE----PDL-DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus         6 ~~l~~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~----~~~-~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .++.+.... -.|.+|+|.| .|.+|...++.++.+|++|+++++++....    ..+ ...+.+.. ...|+++.+.+.
T Consensus       199 dgi~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal-~~ADVVilt~gt  276 (436)
T 3h9u_A          199 DGIKRATDVMIAGKTACVCG-YGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVV-EEAHIFVTTTGN  276 (436)
T ss_dssp             HHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHT-TTCSEEEECSSC
T ss_pred             HHHHHhcCCcccCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHH-hhCCEEEECCCC
Confidence            344333333 3689999999 999999999999999999999887643200    000 00111111 257999988886


Q ss_pred             h-hHH-HHHHhhccCCEEEEEec
Q 041355           80 K-MLD-AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        80 ~-~~~-~~~~~l~~~G~~v~~~~  100 (180)
                      . .+. ..+..++++..+++++.
T Consensus       277 ~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          277 DDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             SCSBCTTTGGGCCTTEEEEECSS
T ss_pred             cCccCHHHHhhcCCCcEEEEeCC
Confidence            5 332 55678899988888864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.42  E-value=0.00081  Score=48.13  Aligned_cols=36  Identities=11%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+  |++|..+++.+...|++|+.+++++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            46889999998  9999999988888899999998876

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.42  E-value=0.00019  Score=51.13  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+.+++|+||+|++|..+++.+...|++|+++++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            4678999999999999998888888999999988

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.41  E-value=0.00024  Score=51.06  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||++++|..+++.+...|++|+++++++
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~   59 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER   59 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSC
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCc
Confidence            567899999999999999888888899999988543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.41  E-value=0.00021  Score=50.48  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   41 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG   41 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            468899999999999999988888999999998864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.40  E-value=0.00051  Score=49.10  Aligned_cols=37  Identities=5%  Similarity=0.008  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC---CEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG---CYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g---~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|   ++|++++++.+
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChh
Confidence            56789999999999999988888888   89999998865

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.40  E-value=0.00026  Score=51.59  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++|++++++.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999999999998888999999998874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.40  E-value=0.0009  Score=49.46  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+.+|||+||+|.+|..+++.+...|++|++++++...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            45689999999999999999998899999999886543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.39  E-value=0.0003  Score=50.47  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||++++|..+++.+...|++|++.++++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~   60 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD   60 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999999999998888999997766544

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.39  E-value=0.00033  Score=50.21  Aligned_cols=85  Identities=16%  Similarity=0.076  Sum_probs=56.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------CcchHHHHHHhHcCCCccEEEeCCChh---hH
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEPDLDAALKRWFPQGIDIYFENVGGK---ML   82 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~~~~~~~~~~~~~~~d~~~d~~g~~---~~   82 (180)
                      +.+|+|+||+|.+|..+++.+...|++|+++++++.+           +-.+ .+.+.+... ++|+++.+.|..   .+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~-~~D~vi~~Ag~~~~~~~   80 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLAD-ANAVNAMVA-GCDGIVHLGGISVEKPF   80 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTC-HHHHHHHHT-TCSEEEECCSCCSCCCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCC-HHHHHHHHc-CCCEEEECCCCcCcCCH
Confidence            4679999999999999998888889999999998754           1111 122333222 689999998731   11


Q ss_pred             -----------HHHHHhhc--cCCEEEEEecccc
Q 041355           83 -----------DAVLLNMR--LRGRIAVSSIISQ  103 (180)
Q Consensus        83 -----------~~~~~~l~--~~G~~v~~~~~~~  103 (180)
                                 ..+++.++  ..++++.+++...
T Consensus        81 ~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~  114 (267)
T 3rft_A           81 EQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT  114 (267)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHH
Confidence                       12233333  2368999887654

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.39  E-value=0.00099  Score=49.10  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..-.++.+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            34578899999999999999999988888999999998754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.38  E-value=0.0003  Score=49.73  Aligned_cols=35  Identities=20%  Similarity=0.063  Sum_probs=31.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +.+++|+||+|++|..+++.+...|++|+++++++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~   36 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSA   36 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999988888899999998864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.38  E-value=0.00054  Score=50.54  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|++++|+||++++|..+++.+...|++|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            47899999999999999999988899999998765

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.38  E-value=0.00033  Score=50.36  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ..+.+++|+||+|++|.++++.+...|++|+.+...
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~   59 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA   59 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999988899999877443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.38  E-value=0.00025  Score=51.41  Aligned_cols=37  Identities=35%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|++++++++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~   63 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   63 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4778999999999999999988889999999998753

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.38  E-value=0.00029  Score=50.64  Aligned_cols=36  Identities=14%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   50 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   50 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCh
Confidence            478899999999999999988888899999998764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.38  E-value=0.00029  Score=51.13  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|.+++|+||++++|.++++.+...|++|++++++.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNS   57 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            478899999999999999988888899999999886

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.37  E-value=0.00051  Score=48.26  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC-Cc----------chHH--HHHHhHcCCCccEEEeCCChh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK-EE----------PDLD--AALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~-~~----------~~~~--~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      .+.+++|+||+|.+|...++.+...|+  +|++++++++. ..          .|+.  +.+.+... ++|+++.|.|..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ-GHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS-SCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhc-CCCEEEECCCcc
Confidence            367899999999999999998888899  99999988654 10          0111  12222222 689999999842


Q ss_pred             h---------------HHHHHHhhcc--CCEEEEEeccccc
Q 041355           81 M---------------LDAVLLNMRL--RGRIAVSSIISQY  104 (180)
Q Consensus        81 ~---------------~~~~~~~l~~--~G~~v~~~~~~~~  104 (180)
                      .               ...+++.+++  .++++.+++...+
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~  136 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGAD  136 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCC
Confidence            1               1223333433  3689988876543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00033  Score=50.93  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC---EEEEEeCCCCC-------------------------CcchHHHHHHhHcC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC---YVVGSAGSKEK-------------------------EEPDLDAALKRWFP   67 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~---~vi~~~~~~~~-------------------------~~~~~~~~~~~~~~   67 (180)
                      .|++++|+||++++|.++++.+...|+   +|+.++++.+.                         +.+++...+.+...
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            478999999999999988776665665   89988887532                         22333333333322


Q ss_pred             --CCccEEEeCCC
Q 041355           68 --QGIDIYFENVG   78 (180)
Q Consensus        68 --~~~d~~~d~~g   78 (180)
                        +++|+++.+.|
T Consensus       112 ~~g~iD~lVnnAG  124 (287)
T 3rku_A          112 EFKDIDILVNNAG  124 (287)
T ss_dssp             GGCSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence              37999999887

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.37  E-value=0.0004  Score=49.74  Aligned_cols=37  Identities=27%  Similarity=0.247  Sum_probs=32.6

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+  +++|..+++.+...|++|+.++++..
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            57899999999  89999988888888999999888754

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.37  E-value=0.0013  Score=50.37  Aligned_cols=41  Identities=22%  Similarity=0.079  Sum_probs=33.3

Q ss_pred             cCC-CCCCEEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCC
Q 041355           12 CSP-KKGEYVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~-~~g~~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~   52 (180)
                      .++ +.++++||+||++++|.+..+.+.. .|++|++++++.+
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~   97 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKP   97 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCch
Confidence            345 4578899999999999997777766 9999999887654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.36  E-value=0.0024  Score=44.71  Aligned_cols=82  Identities=9%  Similarity=0.008  Sum_probs=56.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh---------HcC---CCccEEEeCCChhhHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR---------WFP---QGIDIYFENVGGKMLD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~---------~~~---~~~d~~~d~~g~~~~~   83 (180)
                      .|.+|||.| +|.+|...++.+...|++|++++....   +++.....+         ...   .++|++|-|.+.+..+
T Consensus        30 ~gk~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap~~~---~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N  105 (223)
T 3dfz_A           30 KGRSVLVVG-GGTIATRRIKGFLQEGAAITVVAPTVS---AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVN  105 (223)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHGGGCCCEEEECSSCC---HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHH
Confidence            578899999 899999999999999999998876532   222211111         011   2689999999988777


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+...+..|..+++...
T Consensus       106 ~~I~~~ak~gi~VNvvD~  123 (223)
T 3dfz_A          106 KFVKQHIKNDQLVNMASS  123 (223)
T ss_dssp             HHHHHHSCTTCEEEC---
T ss_pred             HHHHHHHhCCCEEEEeCC
Confidence            766665668888777543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.36  E-value=0.00022  Score=51.72  Aligned_cols=35  Identities=11%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +.+++|+||+|++|..+++.+...|++|+++.++.
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            67899999999999999988888899999987653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.35  E-value=0.0033  Score=45.94  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-------cchH--HHHHHhHcC-CCccEEEeCCCh
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-------EPDL--DAALKRWFP-QGIDIYFENVGG   79 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-------~~~~--~~~~~~~~~-~~~d~~~d~~g~   79 (180)
                      -++..+|||+||+|.+|..+++.+...|.+|++++++....       ..|+  .+.+.+... +++|++|.|++.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            35667899999999999999998888899999998875420       0011  122222222 268999999873

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.34  E-value=0.00046  Score=47.54  Aligned_cols=90  Identities=13%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---Cc--------c---hHH-HHHHhHc-C-CCc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EE--------P---DLD-AALKRWF-P-QGI   70 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~--------~---~~~-~~~~~~~-~-~~~   70 (180)
                      +.....+.++++||-.| +|+ |..++.+++. +.+|++++.+++.   ..        .   .+. ....+.. . ..|
T Consensus        47 ~l~~l~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~  123 (204)
T 3njr_A           47 TLAALAPRRGELLWDIG-GGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP  123 (204)
T ss_dssp             HHHHHCCCTTCEEEEET-CTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred             HHHhcCCCCCCEEEEec-CCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence            33566788999999999 665 8889999988 8899999987654   00        0   000 0001111 1 268


Q ss_pred             cEEEeCCChh--hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGGK--MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+++...+.+  .+..+.+.|+|+|+++....
T Consensus       124 D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          124 EAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             SEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            9988664422  56778889999999987643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.34  E-value=0.00033  Score=51.30  Aligned_cols=84  Identities=23%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchH---------HHHHHhHcCCCccEEEeCCChhhH-HH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDL---------DAALKRWFPQGIDIYFENVGGKML-DA   84 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~d~~g~~~~-~~   84 (180)
                      -.|.+++|.| .|.+|..+++.++.+|++|++.+++.++. +..         ...+.+.. .+.|+++.++....+ ..
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~~~l~~~l-~~aDvVi~~~p~~~i~~~  231 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHL-ARITEMGLVPFHTDELKEHV-KDIDICINTIPSMILNQT  231 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCEEEEGGGHHHHS-TTCSEEEECCSSCCBCHH
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHCCCeEEchhhHHHHh-hCCCEEEECCChhhhCHH
Confidence            3688999999 79999999999999999999998875320 000         01122222 268999999886522 34


Q ss_pred             HHHhhccCCEEEEEecc
Q 041355           85 VLLNMRLRGRIAVSSII  101 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~  101 (180)
                      .+..+++++.++.++..
T Consensus       232 ~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          232 VLSSMTPKTLILDLASR  248 (300)
T ss_dssp             HHTTSCTTCEEEECSST
T ss_pred             HHHhCCCCCEEEEEeCC
Confidence            56778999999998753

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.34  E-value=0.00037  Score=49.74  Aligned_cols=35  Identities=9%  Similarity=0.133  Sum_probs=31.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +++++|+||+|++|...++.+...|++|++++++.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQ   36 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999999999998888888899999988764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.34  E-value=0.00027  Score=51.07  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+...|++|++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   41 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999999999999888888999999988743

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.33  E-value=0.0008  Score=54.14  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .|++++|+||++++|.+.++.+...|++|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999999999999988888888999999876

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.33  E-value=0.00028  Score=50.90  Aligned_cols=36  Identities=11%  Similarity=0.169  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+++++|+||+|++|...++.+...|++|++++++.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   40 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999999999999988888899999998874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.33  E-value=0.0012  Score=48.63  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+|||+||+|.+|..+++.+...|++|++++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            467899999999999999998888899999998853

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.32  E-value=0.00036  Score=49.83  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+|++|..+++.+...|++|+.+++++
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            467899999999999999998888999999988764

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.30  E-value=0.00058  Score=48.51  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~   51 (180)
                      .|.+++|+||+|++|..+++.+...|++ |++++++.
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            4678999999999999999988889995 88888875

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.30  E-value=0.00032  Score=50.48  Aligned_cols=34  Identities=12%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .|.+++|+||+|++|..+++.+...|++|+++++
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r   43 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYR   43 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4678999999999999999888889999999988

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.29  E-value=0.00043  Score=49.07  Aligned_cols=37  Identities=14%  Similarity=0.172  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|...++.+...|++|++++++.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~   46 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAA   46 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5688999999999999999988888999999998743

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.29  E-value=0.00089  Score=49.64  Aligned_cols=86  Identities=17%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHHHhHcCCCccEEEeCCChh-----h
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAALKRWFPQGIDIYFENVGGK-----M   81 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~d~~g~~-----~   81 (180)
                      ..+.+|||+||+|.+|..+++.+...|.+|+++++++..        +-.+ .+.+.+... ++|+++.+.+..     .
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d-~~~~~~~~~-~~d~vih~A~~~~~~~~~   94 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLED-GQALSDAIM-GVSAVLHLGAFMSWAPAD   94 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTC-HHHHHHHHT-TCSEEEECCCCCCSSGGG
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCC-HHHHHHHHh-CCCEEEECCcccCcchhh
Confidence            356789999999999999999999999999999988653        1111 112222222 689999987631     0


Q ss_pred             -----------HHHHHHhhccC--CEEEEEeccc
Q 041355           82 -----------LDAVLLNMRLR--GRIAVSSIIS  102 (180)
Q Consensus        82 -----------~~~~~~~l~~~--G~~v~~~~~~  102 (180)
                                 ...++..++..  ++++.+++..
T Consensus        95 ~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~  128 (347)
T 4id9_A           95 RDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGE  128 (347)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence                       12234444333  4898887744

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.28  E-value=0.0004  Score=50.72  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|.+++|+||+|++|..+++.+...|++|++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~   61 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   61 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4788999999999999999988888999999988743

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.28  E-value=0.00077  Score=48.54  Aligned_cols=37  Identities=11%  Similarity=0.034  Sum_probs=32.8

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+  |++|..+++.+...|++|+.++++.+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46889999998  99999999888888999999998764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.27  E-value=0.0028  Score=45.90  Aligned_cols=80  Identities=8%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCCChhh-----------
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENVGGKM-----------   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~g~~~-----------   81 (180)
                      +|+|+||+|.+|..+++.+. .|.+|+++++++..      +.+.+.+.+...   ++|++|.|.+...           
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~---~~d~vih~a~~~~~~~~~~~~~~~   77 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKL---RPDVIVNAAAHTAVDKAESEPELA   77 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHH---CCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhc---CCCEEEECcccCCHhhhhcCHHHH
Confidence            68999999999999988888 79999999987643      222222223221   5899999986311           


Q ss_pred             -------HHHHHHhhcc-CCEEEEEeccc
Q 041355           82 -------LDAVLLNMRL-RGRIAVSSIIS  102 (180)
Q Consensus        82 -------~~~~~~~l~~-~G~~v~~~~~~  102 (180)
                             ...+++.++. +.+++.+++..
T Consensus        78 ~~~n~~~~~~l~~a~~~~~~~~v~~SS~~  106 (299)
T 1n2s_A           78 QLLNATSVEAIAKAANETGAWVVHYSTDY  106 (299)
T ss_dssp             HHHHTHHHHHHHHHHTTTTCEEEEEEEGG
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence                   1233444443 34888877654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.27  E-value=0.005  Score=40.59  Aligned_cols=86  Identities=12%  Similarity=0.021  Sum_probs=57.7

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC----------Cc--chHHHHHHhHc-CCCccEEEeC-
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK----------EE--PDLDAALKRWF-PQGIDIYFEN-   76 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~----------~~--~~~~~~~~~~~-~~~~d~~~d~-   76 (180)
                      .++++++||-.| +|+ |..+..+++.+  +.++++++.++..          +-  ....+.+.... ++.||+++.. 
T Consensus        19 ~~~~~~~vLd~G-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           19 LFKPGMTVVDLG-AAP-GGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             CCCTTCEEEEES-CTT-CHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCCCeEEEeC-CCC-CHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence            378899999998 665 88888899886  4699999987721          11  11112233323 3489999872 


Q ss_pred             ----CCh-------------hhHHHHHHhhccCCEEEEEec
Q 041355           77 ----VGG-------------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        77 ----~g~-------------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                          .+.             ..+..+.+.|+++|+++....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                221             345667788999999987643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.27  E-value=0.00032  Score=50.29  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .+.+++|+||+|++|..+++.+...|++|+++++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r   53 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   53 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            4678999999999999999988888999999888

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.27  E-value=0.00078  Score=48.69  Aligned_cols=63  Identities=8%  Similarity=0.076  Sum_probs=45.2

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      -.+-.+|||+||+|.+|..+++.+...|.+|++++++...  +.+.+.+.+...   ++|+++.|.+.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~---~~d~vih~A~~   73 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEK---KPNVVINCAAH   73 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhc---CCCEEEECCcc
Confidence            3466789999999999999999888889999999886433  222333333322   68999999873

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.27  E-value=0.00036  Score=51.29  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=60.6

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-HHHH---------------hHcCCCcc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-AALK---------------RWFPQGID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-~~~~---------------~~~~~~~d   71 (180)
                      +.+...++++++||-.| +|. |..+..+++..|++|++++.+++.  -+.. +.+.               ...++.||
T Consensus        82 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~--~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD  157 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIG-CGW-GTTMRRAVERFDVNVIGLTLSKNQ--HARCEQVLASIDTNRSRQVLLQGWEDFAEPVD  157 (318)
T ss_dssp             HHTTSCCCTTCEEEEES-CTT-SHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred             HHHhcCCCCcCEEEEEc-ccc-hHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence            33555678999999999 665 888999998889999999987553  0000 0000               00124689


Q ss_pred             EEEeC-----CCh----hhHHHHHHhhccCCEEEEEec
Q 041355           72 IYFEN-----VGG----KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~d~-----~g~----~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +|+..     ++.    ..+..+.++|+|+|+++....
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            98865     332    156777789999999987654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.26  E-value=0.001  Score=48.43  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   52 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   52 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999999999988888999999998864

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.26  E-value=0.0016  Score=48.02  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+|||+||+|.+|..+++.+...|++|+++++++.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            578999999999999999888888999999998754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.25  E-value=0.002  Score=47.02  Aligned_cols=85  Identities=16%  Similarity=0.093  Sum_probs=58.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCChh------
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVGGK------   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g~~------   80 (180)
                      +.+|||+||+|.+|..+++.+...|.+|+++++++..          -+-. .+.+.+... ++|++|.|++..      
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~-~~d~Vih~a~~~~~~~~~   79 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLN-DVDAVVHLAATRGSQGKI   79 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTT-TCSEEEECCCCCCSSSCG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhc-CCCEEEEccccCCCCChH
Confidence            3689999999999999999999899999999998432          1223 445555544 799999998731      


Q ss_pred             --------hHHHHHHhhccC--CEEEEEecccc
Q 041355           81 --------MLDAVLLNMRLR--GRIAVSSIISQ  103 (180)
Q Consensus        81 --------~~~~~~~~l~~~--G~~v~~~~~~~  103 (180)
                              ....++..++..  .+++.+++...
T Consensus        80 ~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~v  112 (311)
T 3m2p_A           80 SEFHDNEILTQNLYDACYENNISNIVYASTISA  112 (311)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH
Confidence                    123344444433  47888876443

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.25  E-value=0.00072  Score=48.30  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+++++|+||+  |++|...++.+...|++|++++++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46889999998  99999988888888999999988753

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.24  E-value=0.00045  Score=50.28  Aligned_cols=36  Identities=17%  Similarity=0.094  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEe-CCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSA-GSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~-~~~   51 (180)
                      .+.+++|+||++++|.++++.+...|++|+.++ ++.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~   44 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   44 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCH
Confidence            478899999999999999998888999999998 653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.24  E-value=0.0008  Score=46.10  Aligned_cols=91  Identities=12%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---CcchHHH----H-------HHhHcC--CCc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---EEPDLDA----A-------LKRWFP--QGI   70 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---~~~~~~~----~-------~~~~~~--~~~   70 (180)
                      +.....++++++||-.| +|+ |..++.+++... .+|++++.+++.   ..+....    .       ..+...  +.+
T Consensus        32 ~l~~l~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIG-AGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHTTCCTTCEEEEET-CTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHcCCCCCCEEEEEC-CCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            44667789999999999 664 889999998863 599999987654   0000000    0       001111  368


Q ss_pred             cEEEeCCCh----hhHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGG----KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~----~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+++.....    ..+..+.+.|+|+|+++....
T Consensus       110 D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          110 DRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             SEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            999876542    267788889999999988643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.24  E-value=0.00035  Score=49.25  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-------EEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-------YVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-------~vi~~~~~~   51 (180)
                      +.+++|+||+|++|...++.+...|+       +|+.++++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~   43 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   43 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH
Confidence            56899999999999998888888898       899998874

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.24  E-value=0.00076  Score=48.42  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             CCCEEEEecC--CchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAA--SGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga--~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||  ++++|...++.+...|++|+.++++.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            4788999998  89999999998888999999998875

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.23  E-value=0.002  Score=47.90  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   44 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   44 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            3578999999999999999988888999999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.23  E-value=0.0018  Score=43.63  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=52.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-------------CcchHHHHHHhHcC-CCccEEEeCCChh-
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-------------EEPDLDAALKRWFP-QGIDIYFENVGGK-   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~-~~~d~~~d~~g~~-   80 (180)
                      +++|+|.| .|.+|..+++.++.. |.+|+++++++++             .+..-.+.+.+.++ .++|+++.|+++. 
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~  117 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQ  117 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence            66899999 899999999999998 9999999887654             01111122333312 3789999999865 


Q ss_pred             hHHHHHHhh---ccCCEEEEE
Q 041355           81 MLDAVLLNM---RLRGRIAVS   98 (180)
Q Consensus        81 ~~~~~~~~l---~~~G~~v~~   98 (180)
                      ....+...+   .+..+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          118 GNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEE
Confidence            222333333   344466554

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.22  E-value=0.00059  Score=48.04  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~   50 (180)
                      |.+++|+||+|++|..+++.+...|++|+++ .++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~   35 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARS   35 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            5689999999999999999988899999885 554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.22  E-value=0.00043  Score=49.94  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++++|+||+|++|..+++.+...|++|++++++++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~   56 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREE   56 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999999999999988889999999988743

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.22  E-value=0.00076  Score=48.83  Aligned_cols=37  Identities=5%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+  |++|..+++.+...|++|++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46889999998  89999999888888999999988753

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.21  E-value=0.00073  Score=47.58  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~   52 (180)
                      .+.+++|+||+|++|..+++.+...|  ++|++++++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~   40 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence            36789999999999999998888889  89999998754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.21  E-value=0.0018  Score=47.21  Aligned_cols=91  Identities=12%  Similarity=0.098  Sum_probs=61.6

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHH------------HHHHhHcCCCccE
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLD------------AALKRWFPQGIDI   72 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~------------~~~~~~~~~~~d~   72 (180)
                      +.+...+++|++||-.| +|. |..+..+++..|++|++++.+++.   ..+...            ..+.+. .+.||+
T Consensus        64 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~  140 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIG-CGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDR  140 (302)
T ss_dssp             HHHTTCCCTTCEEEEET-CTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSE
T ss_pred             HHHHcCCCCcCEEEEee-ccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCccE
Confidence            44556788999999999 664 889999999989999999987653   000000            001111 457898


Q ss_pred             EEeCCCh----------------hhHHHHHHhhccCCEEEEEecc
Q 041355           73 YFENVGG----------------KMLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        73 ~~d~~g~----------------~~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      |+....-                ..+..+.++|+|+|+++.....
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            8764221                2466777899999999886553

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.20  E-value=0.00094  Score=47.57  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+.+++|+||+|++|..+++.+...|++|++++++.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467899999999999999988888899999998864

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.20  E-value=0.00086  Score=52.00  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchH---HHHHHhHcCCCccE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDL---DAALKRWFPQGIDI   72 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~---~~~~~~~~~~~~d~   72 (180)
                      +|.+++|+||+|++|..+++.+...|++|+.+.++...                    +.+++   .+.+.+..++.+|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~  291 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI  291 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence            57899999999999999888887889999988875432                    22222   23333333335999


Q ss_pred             EEeCCCh
Q 041355           73 YFENVGG   79 (180)
Q Consensus        73 ~~d~~g~   79 (180)
                      ++.+.|-
T Consensus       292 lV~nAGv  298 (454)
T 3u0b_A          292 LVNNAGI  298 (454)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.18  E-value=0.00071  Score=47.98  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|..+++.+...|++|+++++++.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~   42 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK   42 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch
Confidence            5789999999999999999988889999988755543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.17  E-value=0.00059  Score=50.60  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEe-CC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSA-GS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~-~~   50 (180)
                      .+.+++|+||++++|.++++.+...|++|++++ ++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~   80 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   80 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468899999999999999999988999999988 65

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.16  E-value=0.00097  Score=48.17  Aligned_cols=36  Identities=6%  Similarity=0.069  Sum_probs=31.8

Q ss_pred             CCCEEEEecCC--chHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAAS--GAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~--g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||+  +++|..+++.+...|++|+.++++.
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            47899999988  5699998888888999999999886

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.16  E-value=0.0024  Score=41.09  Aligned_cols=82  Identities=11%  Similarity=0.000  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChhhH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGKML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~~~   82 (180)
                      ..++|+|.| .|.+|..+++.++..|.+|+++++++++             .+..-.+.+.+..-.++|+++-|++.+..
T Consensus         6 ~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            6 ICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            356799999 8999999999999999999999998664             01111122222211267888888876521


Q ss_pred             ----HHHHHhhccCCEEEEE
Q 041355           83 ----DAVLLNMRLRGRIAVS   98 (180)
Q Consensus        83 ----~~~~~~l~~~G~~v~~   98 (180)
                          ....+.+.+..+++.-
T Consensus        85 n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           85 AGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence                1223444556665554

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.15  E-value=0.00085  Score=47.82  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=30.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHH---cCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKL---AGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~---~g~~vi~~~~~~   51 (180)
                      .+.+++|+||++++|...++.+..   .|++|+.++++.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~   43 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCH
Confidence            367899999999999998777766   899999998874

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.14  E-value=0.00098  Score=48.05  Aligned_cols=82  Identities=9%  Similarity=0.016  Sum_probs=55.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCCCccEEEeCCChhh---------------
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQGIDIYFENVGGKM---------------   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~d~~g~~~---------------   81 (180)
                      +|||+||+|.+|..+++.+...|.+|+++++....  +.+.+.+.+...   ++|+++.|.+...               
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~---~~d~vi~~a~~~~~~~~~~~~~~~~~~n   83 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEI---RPHIIIHCAAYTKVDQAEKERDLAYVIN   83 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHH---CCSEEEECCCCCCHHHHTTCHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhc---CCCEEEECCcccChHHHhcCHHHHHHHH
Confidence            79999999999999999888889999999986543  223333333332   6899999987321               


Q ss_pred             ---HHHHHHhh-ccCCEEEEEecccc
Q 041355           82 ---LDAVLLNM-RLRGRIAVSSIISQ  103 (180)
Q Consensus        82 ---~~~~~~~l-~~~G~~v~~~~~~~  103 (180)
                         ...++..+ +.+.+++.+++...
T Consensus        84 ~~~~~~l~~~~~~~~~~~v~~SS~~v  109 (287)
T 3sc6_A           84 AIGARNVAVASQLVGAKLVYISTDYV  109 (287)
T ss_dssp             THHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHcCCeEEEEchhhh
Confidence               12233333 34568888876543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.13  E-value=0.00053  Score=48.82  Aligned_cols=36  Identities=17%  Similarity=-0.043  Sum_probs=31.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++++|+||+|++|..+++.+...|++|+.++++.++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   37 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQ   37 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGS
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            368999999999999999998899999999887553

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.13  E-value=0.0023  Score=46.25  Aligned_cols=78  Identities=22%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|+++.+|..+.+++...|++|.++.+.    ..++.+.+++     +|+++.++|.+.+- --..++++..
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~----T~~L~~~~~~-----ADIVI~Avg~p~~I-~~~~vk~Gav  228 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF----TRDLADHVSR-----ADLVVVAAGKPGLV-KGEWIKEGAI  228 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT----CSCHHHHHHT-----CSEEEECCCCTTCB-CGGGSCTTCE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC----CcCHHHHhcc-----CCEEEECCCCCCCC-CHHHcCCCeE
Confidence            379999999988889999999999999998876553    3355555554     79999999976321 1145689999


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       229 VIDvgi~~  236 (286)
T 4a5o_A          229 VIDVGINR  236 (286)
T ss_dssp             EEECCSCS
T ss_pred             EEEecccc
Confidence            99998754

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=97.12  E-value=0.0031  Score=44.28  Aligned_cols=62  Identities=15%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             CCCEEEEecC----------------CchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhH
Q 041355           16 KGEYVYVSAA----------------SGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRW   65 (180)
Q Consensus        16 ~g~~vlI~Ga----------------~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~   65 (180)
                      .|.+|||+||                +|.+|.+.++.+...|++|+.+.++...              ...+..+.+.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5789999999                7889999999999999999998886542              112223344443


Q ss_pred             cCCCccEEEeCCC
Q 041355           66 FPQGIDIYFENVG   78 (180)
Q Consensus        66 ~~~~~d~~~d~~g   78 (180)
                      . +++|+++.+.+
T Consensus        82 ~-~~~Dili~aAA   93 (232)
T 2gk4_A           82 V-QDYQVLIHSMA   93 (232)
T ss_dssp             G-GGCSEEEECSB
T ss_pred             c-CCCCEEEEcCc
Confidence            3 35788888766

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.12  E-value=0.00034  Score=49.50  Aligned_cols=61  Identities=21%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEE-e--CCCCC--------------Ccc---hHHHHHHhHcCCCccEEEeC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-A--GSKEK--------------EEP---DLDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~--~~~~~--------------~~~---~~~~~~~~~~~~~~d~~~d~   76 (180)
                      |++++|+||+|++|.++++.+...|++|+++ .  ++.++              +.+   .+.+.+.+. .+++|+++.+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~g~iD~lv~~   79 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQH-GEAIDTIVSN   79 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGGG-SSCEEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHH-cCCCCEEEEC
Confidence            4689999999999999999888899999998 4  65332              111   122222222 2479999998


Q ss_pred             CC
Q 041355           77 VG   78 (180)
Q Consensus        77 ~g   78 (180)
                      .|
T Consensus        80 Ag   81 (244)
T 1zmo_A           80 DY   81 (244)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.11  E-value=0.00065  Score=47.10  Aligned_cols=78  Identities=13%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------CcchHHHHHHhHcCCCccEEEeCCChh--
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------EEPDLDAALKRWFPQGIDIYFENVGGK--   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------~~~~~~~~~~~~~~~~~d~~~d~~g~~--   80 (180)
                      +|+|+||+|.+|..+++.+...|.+|+++++++++                .+++.     +.. +++|++|.|.|..  
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-----~~~-~~~d~vi~~ag~~~~   75 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-----ADL-DSVDAVVDALSVPWG   75 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-----HHH-TTCSEEEECCCCCTT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-----hhc-ccCCEEEECCccCCC
Confidence            58999999999999999998889999999997543                11111     111 3689999999751  


Q ss_pred             ---------hHHHHHHhhc-cCCEEEEEeccc
Q 041355           81 ---------MLDAVLLNMR-LRGRIAVSSIIS  102 (180)
Q Consensus        81 ---------~~~~~~~~l~-~~G~~v~~~~~~  102 (180)
                               ....+++.++ .+++++.+++..
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~  107 (224)
T 3h2s_A           76 SGRGYLHLDFATHLVSLLRNSDTLAVFILGSA  107 (224)
T ss_dssp             SSCTHHHHHHHHHHHHTCTTCCCEEEEECCGG
T ss_pred             cchhhHHHHHHHHHHHHHHHcCCcEEEEecce
Confidence                     1233444443 347888886543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.10  E-value=0.0023  Score=47.91  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=32.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~   53 (180)
                      +.+|||+||+|.+|..+++.+... |.+|++++++.+.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   61 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR   61 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhh
Confidence            468999999999999988888777 8999999998654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00056  Score=48.69  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~   52 (180)
                      |++++|+||++++|...++.+...  |+.|+.++++.+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~   39 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA   39 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHH
Confidence            678999999999999877666555  578888888754

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.09  E-value=0.0014  Score=48.34  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-------------cchH--HHHHHhHcCC-CccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-------------EPDL--DAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-------------~~~~--~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++....             ..|+  .+.+.+...+ ++|++|.|++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            467899999999999999988888899999998864320             0011  1222222222 58999999873


Q ss_pred             h-h--------------HHHHHHhhcc--CCEEEEEeccccc
Q 041355           80 K-M--------------LDAVLLNMRL--RGRIAVSSIISQY  104 (180)
Q Consensus        80 ~-~--------------~~~~~~~l~~--~G~~v~~~~~~~~  104 (180)
                      . .              ...+++.+.+  .++++.+++...+
T Consensus       100 ~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~  141 (333)
T 2q1w_A          100 YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCY  141 (333)
T ss_dssp             CSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGG
T ss_pred             cCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHh
Confidence            1 1              1223333333  3689988875543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.09  E-value=0.0017  Score=45.61  Aligned_cols=61  Identities=26%  Similarity=0.246  Sum_probs=43.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .+.+|+|+||+|.+|..+++.+...  |.+|+++++++++             +-.+ .+.+.+... ++|++|.+.|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~-~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITD-ADSINPAFQ-GIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTS-HHHHHHHHT-TCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCC-HHHHHHHHc-CCCEEEEecc
Confidence            4678999999999999999888877  7899999987432             1011 122333322 5899999876

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.09  E-value=0.0021  Score=46.48  Aligned_cols=78  Identities=23%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|+++.+|..+.+++...|++|.++.+.    ..++.+.++     .+|+++.++|.+.+- --..++++..
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~----t~~L~~~~~-----~ADIVI~Avg~p~~I-~~~~vk~Gav  228 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF----TTDLKSHTT-----KADILIVAVGKPNFI-TADMVKEGAV  228 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----CSSHHHHHT-----TCSEEEECCCCTTCB-CGGGSCTTCE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC----chhHHHhcc-----cCCEEEECCCCCCCC-CHHHcCCCcE
Confidence            389999999977789999999999999998766543    334444444     379999999976321 1145689989


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       229 VIDvgi~~  236 (285)
T 3l07_A          229 VIDVGINH  236 (285)
T ss_dssp             EEECCCEE
T ss_pred             EEEecccC
Confidence            99988654

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=97.09  E-value=0.0034  Score=43.96  Aligned_cols=62  Identities=21%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             CCCEEEEecC----------------CchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcC
Q 041355           16 KGEYVYVSAA----------------SGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFP   67 (180)
Q Consensus        16 ~g~~vlI~Ga----------------~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~   67 (180)
                      .|.++||+||                +|++|.+.++.+...|++|+.+.++...            ...+..+.+.+.. 
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~~-   85 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASV-   85 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHG-
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHhc-
Confidence            5889999998                5899999999999999999988765321            1122233333322 


Q ss_pred             CCccEEEeCCC
Q 041355           68 QGIDIYFENVG   78 (180)
Q Consensus        68 ~~~d~~~d~~g   78 (180)
                      +++|+++.+.|
T Consensus        86 ~~~Dili~~Aa   96 (226)
T 1u7z_A           86 QQQNIFIGCAA   96 (226)
T ss_dssp             GGCSEEEECCB
T ss_pred             CCCCEEEECCc
Confidence            35788888776

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.09  E-value=0.00034  Score=48.16  Aligned_cols=90  Identities=13%  Similarity=0.084  Sum_probs=59.9

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHH-----------HHHh-H-cCCCcc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDA-----------ALKR-W-FPQGID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~-----------~~~~-~-~~~~~d   71 (180)
                      +.+...++++++||-.| +| .|..+..+++. +.+|++++.+++.   ....+..           ...+ . ..+.||
T Consensus        69 ~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIG-TG-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhcCCCCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCcc
Confidence            44566788999999999 55 48888888888 7899999987653   0000000           0000 0 123799


Q ss_pred             EEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           72 IYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +++.+..-. ....+.+.|+|+|+++....
T Consensus       146 ~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          146 AIIVTAAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             EEEESSBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             EEEEccchhhhhHHHHHhcccCcEEEEEEc
Confidence            998765544 44567789999999987644

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.09  E-value=0.0017  Score=46.94  Aligned_cols=78  Identities=18%  Similarity=0.061  Sum_probs=58.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|+++.+|..+.+++...|++|.++.+.    ..++.+.++     .+|+++.++|.+.+- --..++++..
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~----t~~L~~~~~-----~ADIVI~Avg~p~~I-~~~~vk~Gav  227 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK----TKDLSLYTR-----QADLIIVAAGCVNLL-RSDMVKEGVI  227 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----CSCHHHHHT-----TCSEEEECSSCTTCB-CGGGSCTTEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC----chhHHHHhh-----cCCEEEECCCCCCcC-CHHHcCCCeE
Confidence            489999999988889999999999999998876653    334444444     379999999976321 1145688888


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.+|...
T Consensus       228 VIDVgi~~  235 (285)
T 3p2o_A          228 VVDVGINR  235 (285)
T ss_dssp             EEECCCEE
T ss_pred             EEEeccCc
Confidence            88888754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.0033  Score=43.27  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=61.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHHH-----------HHHhHc--CCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLDA-----------ALKRWF--PQG   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~~-----------~~~~~~--~~~   69 (180)
                      +.+...+.++++||..| +| .|..+..+++..+  .+|++++.+++.   ....+..           ......  .+.
T Consensus        69 ~~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIG-TG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHhhCCCCCCEEEEEC-CC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            44566788999999999 66 5999999999886  699999887543   0000000           000111  236


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ||+++.+.... ....+.+.|+++|+++....
T Consensus       147 fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             eeEEEECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            99998876644 44677789999999987743

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.08  E-value=0.003  Score=45.82  Aligned_cols=59  Identities=19%  Similarity=0.123  Sum_probs=44.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +|||+||+|=+|...++.+...|.+|+++.|++....-.+.. +....-.++|.++.+.+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~-~~~~~l~~~d~vihla~   60 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDE-LAASGLPSCDAAVNLAG   60 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHH-HHHHCCCSCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecch-hhHhhccCCCEEEEecc
Confidence            599999999999999999999999999999977653222322 22222237899998876

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.07  E-value=0.00062  Score=49.78  Aligned_cols=87  Identities=13%  Similarity=0.083  Sum_probs=50.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---cchHH--HHHHhHcCC-CccEEEeCCChhh---------
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---EPDLD--AALKRWFPQ-GIDIYFENVGGKM---------   81 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---~~~~~--~~~~~~~~~-~~d~~~d~~g~~~---------   81 (180)
                      +.+|||+||+|.+|..+++.+...|.+|++++++....   ..|+.  +.+.+...+ ++|++|.|.+...         
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~   81 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPD   81 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC-------------
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHH
Confidence            56899999999999999988888899999998754320   00110  111222222 5899999987321         


Q ss_pred             ---------HHHHHHhh-ccCCEEEEEecccc
Q 041355           82 ---------LDAVLLNM-RLRGRIAVSSIISQ  103 (180)
Q Consensus        82 ---------~~~~~~~l-~~~G~~v~~~~~~~  103 (180)
                               ...+++.+ +.+++++.+++...
T Consensus        82 ~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v  113 (315)
T 2ydy_A           82 AASQLNVDASGNLAKEAAAVGAFLIYISSDYV  113 (315)
T ss_dssp             ------CHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeEEEEchHHH
Confidence                     12233333 34568888877553

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.06  E-value=0.00079  Score=49.89  Aligned_cols=34  Identities=9%  Similarity=0.035  Sum_probs=28.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+++|+||+|++|..+++.+...|++|+.++++
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~   35 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYAT   35 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEee
Confidence            5689999999999999998888889987766543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.06  E-value=0.00098  Score=46.72  Aligned_cols=86  Identities=20%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC------cc------hHHHHHHhHcCCCccEEEeCCChhh--
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE------EP------DLDAALKRWFPQGIDIYFENVGGKM--   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~------~~------~~~~~~~~~~~~~~d~~~d~~g~~~--   81 (180)
                      .|.+|+|+||+|.+|..+++.+...|++|+++++++++.      .-      |+.+.+.+.. +++|+++.+.|...  
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~D~vi~~ag~~~~~   98 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAF-ASIDAVVFAAGSGPHT   98 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGG-TTCSEEEECCCCCTTS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHH-cCCCEEEECCCCCCCC
Confidence            478999999999999999999988999999999986540      00      1111111211 27999999988320  


Q ss_pred             ------------HHHHHHhhc--cCCEEEEEeccc
Q 041355           82 ------------LDAVLLNMR--LRGRIAVSSIIS  102 (180)
Q Consensus        82 ------------~~~~~~~l~--~~G~~v~~~~~~  102 (180)
                                  ...+++.++  ..++++.+++..
T Consensus        99 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           99 GADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence                        123333333  347899887754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.06  E-value=0.0031  Score=45.35  Aligned_cols=78  Identities=13%  Similarity=-0.005  Sum_probs=60.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|+++.+|..+.+++...|++|.++.+.    ..++.+.+++     .|+++.++|.+.+- --..++++..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~----t~~L~~~~~~-----ADIVI~Avg~p~~I-~~~~vk~Gav  217 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK----TKDIGSMTRS-----SKIVVVAVGRPGFL-NREMVTPGSV  217 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----CSCHHHHHHH-----SSEEEECSSCTTCB-CGGGCCTTCE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC----cccHHHhhcc-----CCEEEECCCCCccc-cHhhccCCcE
Confidence            689999999987889999999999999998877653    3456656665     69999999976221 1145689989


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       218 VIDvgi~~  225 (276)
T 3ngx_A          218 VIDVGINY  225 (276)
T ss_dssp             EEECCCEE
T ss_pred             EEEeccCc
Confidence            99988754

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=97.05  E-value=0.0029  Score=47.80  Aligned_cols=39  Identities=23%  Similarity=0.071  Sum_probs=31.5

Q ss_pred             CCCCEEEEecCCchHHHH-HHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQL-VGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~-~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ..++++||+||++++|++ ++.+|...|+.++++....+.
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~   87 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAG   87 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcc
Confidence            456899999999999997 566776789998888876553

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.04  E-value=0.0027  Score=45.56  Aligned_cols=84  Identities=18%  Similarity=0.233  Sum_probs=53.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCCC-----------cchH--HHHHHhHcCCCccEEEeCCChh---
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEKE-----------EPDL--DAALKRWFPQGIDIYFENVGGK---   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~~-----------~~~~--~~~~~~~~~~~~d~~~d~~g~~---   80 (180)
                      +|+|+||+|.+|...++.+...  |.+|+++++++++.           ..|+  .+.+.+... ++|++|.+.+..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQ-GVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTT-TCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHh-CCCEEEEeCCCCchH
Confidence            4899999999999998888776  88999999876530           0011  123334333 589999998742   


Q ss_pred             ---hHHHHHHhhcc--CCEEEEEecccc
Q 041355           81 ---MLDAVLLNMRL--RGRIAVSSIISQ  103 (180)
Q Consensus        81 ---~~~~~~~~l~~--~G~~v~~~~~~~  103 (180)
                         ....+++.++.  -++++.+++...
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~~~  107 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSLLHA  107 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence               23344444433  258888876554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.02  E-value=0.0008  Score=47.75  Aligned_cols=90  Identities=11%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---CcchHH------------HHHHhHcCC-C
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---EEPDLD------------AALKRWFPQ-G   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---~~~~~~------------~~~~~~~~~-~   69 (180)
                      +.....++++++||-.| +|+ |..+..+++..  +.+|++++.+++.   ....+.            ..+.+.... .
T Consensus        85 i~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN  162 (255)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred             HHHhhCCCCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence            44667789999999998 564 88899999885  4699999887553   000000            001111222 6


Q ss_pred             ccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+++-.....  .+..+.+.|+|+|+++.+.
T Consensus       163 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          163 VDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             EEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            99998766644  7888999999999998774

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.99  E-value=0.00074  Score=47.54  Aligned_cols=34  Identities=12%  Similarity=0.094  Sum_probs=29.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEE-eCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGS-AGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~-~~~   50 (180)
                      +++++|+||+|++|..+++.+...|++|+++ .++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~   35 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQN   35 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999998888899999988 554

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.99  E-value=0.0054  Score=45.48  Aligned_cols=80  Identities=24%  Similarity=0.252  Sum_probs=52.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC------------------cchH--HHHHHhHcCC-CccEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE------------------EPDL--DAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~------------------~~~~--~~~~~~~~~~-~~d~~~d   75 (180)
                      ..+|+|+||+|.+|..+++.+...|.+|+++++++...                  ..|+  .+.+.+.... ++|++|.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            35799999999999999998888899999999976210                  0011  1223332222 6999999


Q ss_pred             CCChh---hHHHHHHhhccCC---EEE
Q 041355           76 NVGGK---MLDAVLLNMRLRG---RIA   96 (180)
Q Consensus        76 ~~g~~---~~~~~~~~l~~~G---~~v   96 (180)
                      +.+..   ....++..++..|   +++
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            99853   3344555555444   555

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.99  E-value=0.0013  Score=48.59  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      .|.+++|+||+|++|...++.+...|++|+++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~   41 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   41 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            5789999999999999999888889999998754

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.99  E-value=0.0032  Score=48.22  Aligned_cols=41  Identities=12%  Similarity=0.043  Sum_probs=31.4

Q ss_pred             cCCCCCCEEEEecCCchHHHH--HHHHHHHcCCEEEEEeCCCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQL--VGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~--~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..+..|++++|+||++++|.+  ....+...|++|+.++++..
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~   97 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETG   97 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcc
Confidence            345678999999999999998  44444445999998887643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.99  E-value=0.0015  Score=47.08  Aligned_cols=90  Identities=20%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---CcchHH------------HHHHhHcC-CC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---EEPDLD------------AALKRWFP-QG   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---~~~~~~------------~~~~~~~~-~~   69 (180)
                      +.....+.++++||-.| +|+ |..++.+++..  +.+|++++.++..   ......            ..+.+... +.
T Consensus       104 i~~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  181 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD  181 (277)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred             HHHHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence            34566788999999998 665 88999999985  4589998876543   000000            00011122 36


Q ss_pred             ccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      ||+++-.....  .+..+.+.|+++|+++...
T Consensus       182 ~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          182 VDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             EEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99988765543  7788889999999998874

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.99  E-value=0.0043  Score=44.57  Aligned_cols=84  Identities=21%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCCC-----------cchH--HHHHHhHcCCCccEEEeCCChh---
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEKE-----------EPDL--DAALKRWFPQGIDIYFENVGGK---   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~~-----------~~~~--~~~~~~~~~~~~d~~~d~~g~~---   80 (180)
                      +|+|+||+|.+|...++.+...  |.+|+++++++++.           ..|+  .+.+.+... ++|++|.+.+..   
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~-~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFA-GVSKLLFISGPHYDN   80 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTT-TCSEEEECCCCCSCH
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHh-cCCEEEEcCCCCcCc
Confidence            5899999999999998888777  88999999876530           0011  123444333 589999998731   


Q ss_pred             -----hHHHHHHhhccC--CEEEEEecccc
Q 041355           81 -----MLDAVLLNMRLR--GRIAVSSIISQ  103 (180)
Q Consensus        81 -----~~~~~~~~l~~~--G~~v~~~~~~~  103 (180)
                           ....+++.++..  ++++.+++...
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYAFA  110 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEETTG
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence                 123334444433  48888876543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.98  E-value=0.00043  Score=48.65  Aligned_cols=91  Identities=12%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHH-----------HHH-hHcCC-Ccc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDA-----------ALK-RWFPQ-GID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~-----------~~~-~~~~~-~~d   71 (180)
                      +.+...++++++||..| +| .|..+..+++..+.+|++++.++..   ....+..           ... ....+ +||
T Consensus        83 ~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  160 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVG-TG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  160 (235)
T ss_dssp             HHHHHTCCTTCCEEEEC-CT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhcCCCCCCEEEEEe-CC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCcc
Confidence            33556788999999999 66 7999999999877789999877543   0000000           000 01112 489


Q ss_pred             EEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           72 IYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +|+.+..-. ....+.+.|+++|+++....
T Consensus       161 ~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          161 VIIVTAGAPKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEEECSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence            998776644 45677889999999987644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.97  E-value=0.0016  Score=41.77  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      +++|+|+|+ |.+|...++.++..|.+|+++++++++             .+..-.+.+.+..-+++|+++.|++.+
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            567999995 999999999999999999888876443             000001223322123689999999864

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.97  E-value=0.0047  Score=46.47  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----------cchH--HHHHHhHcCCCccEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----------EPDL--DAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----------~~~~--~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +.+|||+||+|.+|..+++.+...|.+|++++++....           ..|+  .+.+.+... ++|++|.+.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~d~Vih~A~  102 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE-GVDHVFNLAA  102 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT-TCSEEEECCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC-CCCEEEECce
Confidence            56899999999999999988888899999999876530           0011  122333322 6899999987

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.96  E-value=0.0045  Score=45.09  Aligned_cols=78  Identities=15%  Similarity=0.059  Sum_probs=58.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH--HHHHhHcCCCccEEEeCCChhhHHHHHHhhccC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD--AALKRWFPQGIDIYFENVGGKMLDAVLLNMRLR   92 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~   92 (180)
                      -.|.+++|.|+++.+|..+.+++...|++|.++.+.    ..++.  +.+++     +|+++.++|.+.+- --..++++
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~----T~~l~l~~~~~~-----ADIVI~Avg~p~~I-~~~~vk~G  232 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG----TSTEDMIDYLRT-----ADIVIAAMGQPGYV-KGEWIKEG  232 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----SCHHHHHHHHHT-----CSEEEECSCCTTCB-CGGGSCTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC----CCCchhhhhhcc-----CCEEEECCCCCCCC-cHHhcCCC
Confidence            489999999987889999999999999998877653    22444  44443     79999999976221 11457899


Q ss_pred             CEEEEEeccc
Q 041355           93 GRIAVSSIIS  102 (180)
Q Consensus        93 G~~v~~~~~~  102 (180)
                      ..++.++...
T Consensus       233 avVIDvgi~~  242 (300)
T 4a26_A          233 AAVVDVGTTP  242 (300)
T ss_dssp             CEEEECCCEE
T ss_pred             cEEEEEeccC
Confidence            9999998754

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.95  E-value=0.0044  Score=45.47  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----------cchH--HHHHHhHcC-CCccEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----------EPDL--DAALKRWFP-QGIDIYFENVG   78 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----------~~~~--~~~~~~~~~-~~~d~~~d~~g   78 (180)
                      .+|||+||+|.+|..+++.+...|.+|+++++.....           ..|+  .+.+.+... .++|++|.+++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~   76 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA   76 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence            3699999999999999998888899999988764320           0010  112222222 37999999987

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.95  E-value=0.0013  Score=46.30  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=58.9

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc---
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF---   66 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~---   66 (180)
                      ...+.++++||-.| +| .|..+..+++..  +.+|++++.++..                   ...+..+.+....   
T Consensus        55 l~~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~  132 (239)
T 2hnk_A           55 LTKISGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSK  132 (239)
T ss_dssp             HHHHHTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCS
T ss_pred             HHHhhCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhc
Confidence            34456789999998 55 589999999987  5699999987653                   0112222222221   


Q ss_pred             -----------C-CCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           67 -----------P-QGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 -----------~-~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                                 + +.||+|+...+.+    .+..+.+.|+++|.++..
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                       2 5799998766543    457777899999999875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.94  E-value=0.0021  Score=47.83  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc-CC-EEEEEeCCCCC---------------CcchH--HHHHHhHcCCCccEEEe
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLA-GC-YVVGSAGSKEK---------------EEPDL--DAALKRWFPQGIDIYFE   75 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~-g~-~vi~~~~~~~~---------------~~~~~--~~~~~~~~~~~~d~~~d   75 (180)
                      -.+.+|||+||+|.+|..+++.+... |. +|+++++++.+               -..|+  .+.+.+... ++|++|.
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE-GVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT-TCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh-cCCEEEE
Confidence            35789999999999999988887777 98 99999887432               00011  123333333 6899999


Q ss_pred             CCCh
Q 041355           76 NVGG   79 (180)
Q Consensus        76 ~~g~   79 (180)
                      +++.
T Consensus        98 ~Aa~  101 (344)
T 2gn4_A           98 AAAL  101 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9873

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.92  E-value=0.0036  Score=45.27  Aligned_cols=78  Identities=19%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|++..+|.-+.+++...|++|..+.+.    ..++.+.+++     +|+++-++|.+.+ ---..++++..
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~----t~~L~~~~~~-----ADIVI~Avg~p~l-I~~~~vk~Gav  226 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF----TKNLRHHVEN-----ADLLIVAVGKPGF-IPGDWIKEGAI  226 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS----CSCHHHHHHH-----CSEEEECSCCTTC-BCTTTSCTTCE
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC----chhHHHHhcc-----CCEEEECCCCcCc-CCHHHcCCCcE
Confidence            378999999977789999999999999998887653    4466666665     7999999997632 01134689999


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       227 VIDVgi~r  234 (288)
T 1b0a_A          227 VIDVGINR  234 (288)
T ss_dssp             EEECCCEE
T ss_pred             EEEccCCc
Confidence            99998754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.92  E-value=0.0024  Score=46.48  Aligned_cols=63  Identities=13%  Similarity=0.032  Sum_probs=42.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCCC---------cchH--HHHHHhHcCC-CccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEKE---------EPDL--DAALKRWFPQ-GIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~~---------~~~~--~~~~~~~~~~-~~d~~~d~~g~   79 (180)
                      +.+|||+||+|.+|..+++.+...  |.+|++++++....         ..|+  .+.+.+.... ++|++|.+.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            457999999999999988877766  78999998875430         0011  1222222222 68999999873

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.92  E-value=0.0023  Score=46.11  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------CcchH--HHHHHhHcCCCccEEEeCCChh-------
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------EEPDL--DAALKRWFPQGIDIYFENVGGK-------   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------~~~~~--~~~~~~~~~~~~d~~~d~~g~~-------   80 (180)
                      +.+|||+| +|.+|..+++.+...|.+|++++++.+.       ...|+  .+.+.+...+++|++|.+.+..       
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~   81 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDEHY   81 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC----
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHH
Confidence            35799999 6999999999998889999999998654       00011  1112222233599999998642       


Q ss_pred             ------hHHHHHHhhccC--CEEEEEecccc
Q 041355           81 ------MLDAVLLNMRLR--GRIAVSSIISQ  103 (180)
Q Consensus        81 ------~~~~~~~~l~~~--G~~v~~~~~~~  103 (180)
                            ....++..++..  ++++.+++...
T Consensus        82 ~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~v  112 (286)
T 3gpi_A           82 RLSYVEGLRNTLSALEGAPLQHVFFVSSTGV  112 (286)
T ss_dssp             -CCSHHHHHHHHHHTTTSCCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEcccEE
Confidence                  123444554433  58888876543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.91  E-value=0.0029  Score=46.24  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +.+|||+||+|.+|..+++.+...|.+|+++.++..-   +.+.+.+.+.+.   ++|++|.|++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~---~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASE---RIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHH---CCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhc---CCCEEEEcCe
Confidence            3579999999999999998888889998887765432   222233333221   6899999886

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=96.91  E-value=0.0055  Score=46.03  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999999999999999988888999999988753

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.90  E-value=0.0042  Score=45.88  Aligned_cols=60  Identities=17%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC-------CEEEEEeCCCCC----------------CcchHHHHHHhHcCCCccE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG-------CYVVGSAGSKEK----------------EEPDLDAALKRWFPQGIDI   72 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g-------~~vi~~~~~~~~----------------~~~~~~~~~~~~~~~~~d~   72 (180)
                      .+.+|||+||+|.+|..+++.+...|       .+|++++++...                .+++.   +.+...+++|+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~d~   89 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGE---AEKLVEARPDV   89 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTH---HHHHHHTCCSE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHH---HHHHHhcCCCE
Confidence            45689999999999999998888888       789998887531                11121   22222247999


Q ss_pred             EEeCCC
Q 041355           73 YFENVG   78 (180)
Q Consensus        73 ~~d~~g   78 (180)
                      +|.+.+
T Consensus        90 vih~A~   95 (342)
T 2hrz_A           90 IFHLAA   95 (342)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999987

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.90  E-value=0.0051  Score=46.75  Aligned_cols=41  Identities=20%  Similarity=0.097  Sum_probs=32.6

Q ss_pred             cCC-CCCCEEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCC
Q 041355           12 CSP-KKGEYVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~-~~g~~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~   52 (180)
                      ..+ ..|+++||+||++++|.+..+.+.. .|++|++++++.+
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~   83 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERP   83 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCch
Confidence            444 4567889999999999987777776 9999998876543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.90  E-value=0.0035  Score=45.63  Aligned_cols=78  Identities=15%  Similarity=0.090  Sum_probs=59.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|.+++|.|++..+|.-+.+++...|++|.++.+.    ..++.+.+++     +|+++-++|.+.+ ---..++++..
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~----t~~L~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~Gav  232 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK----TAHLDEEVNK-----GDILVVATGQPEM-VKGEWIKPGAI  232 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----CSSHHHHHTT-----CSEEEECCCCTTC-BCGGGSCTTCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC----cccHHHHhcc-----CCEEEECCCCccc-CCHHHcCCCcE
Confidence            378999999977789999999999999998876543    3455555544     7999999997632 11134789999


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.++...
T Consensus       233 VIDVgi~~  240 (301)
T 1a4i_A          233 VIDCGINY  240 (301)
T ss_dssp             EEECCCBC
T ss_pred             EEEccCCC
Confidence            99998764

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.89  E-value=0.0052  Score=49.37  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+.++|+||++++|.+.++.+...|++|++.++.
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~  355 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK  355 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc
Confidence            36789999999999999999998999999988753

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.89  E-value=0.0046  Score=45.58  Aligned_cols=84  Identities=19%  Similarity=0.137  Sum_probs=53.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----------cchH--HHHHHhHcCCCccEEEeCCChhh----
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----------EPDL--DAALKRWFPQGIDIYFENVGGKM----   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----------~~~~--~~~~~~~~~~~~d~~~d~~g~~~----   81 (180)
                      +|||+||+|.+|...++.+...|.+|++++++....           ..|+  .+.+.+... ++|++|.|.+...    
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vih~a~~~~~~~~   93 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR-GLDGVIFSAGYYPSRPR   93 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT-TCSEEEEC---------
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc-CCCEEEECCccCcCCCC
Confidence            799999999999999998888899999999876530           0011  123444333 5899999987311    


Q ss_pred             ------------HHHHHHhhcc-C-CEEEEEecccc
Q 041355           82 ------------LDAVLLNMRL-R-GRIAVSSIISQ  103 (180)
Q Consensus        82 ------------~~~~~~~l~~-~-G~~v~~~~~~~  103 (180)
                                  ...+++.+.+ + ++++.+++...
T Consensus        94 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~  129 (342)
T 2x4g_A           94 RWQEEVASALGQTNPFYAACLQARVPRILYVGSAYA  129 (342)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHh
Confidence                        1223333332 3 68988877654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.88  E-value=0.00063  Score=48.69  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--------CcchHH-HHHHh--HcCCCccEEEeCCChhhH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--------EEPDLD-AALKR--WFPQGIDIYFENVGGKML   82 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--------~~~~~~-~~~~~--~~~~~~d~~~d~~g~~~~   82 (180)
                      .++.+||..| +|+ |..+.++++.. +.+|++++.++..        ....+. .....  ...+.||+|+.......+
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~l  161 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA  161 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCH
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChhhH
Confidence            6788999999 777 99999999986 6799999987543        000000 00000  112379999864444478


Q ss_pred             HHHHHhhccCCEEEEEec
Q 041355           83 DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~  100 (180)
                      ..+.+.|+|+|+++....
T Consensus       162 ~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          162 EELARVVKPGGWVITATP  179 (269)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEEc
Confidence            889999999999988754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.88  E-value=0.0031  Score=44.74  Aligned_cols=86  Identities=12%  Similarity=-0.009  Sum_probs=57.6

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHcC-CC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWFP-QG   69 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~-~~   69 (180)
                      ..+.++.+||-.| +| .|..++.+++.+  +.+|++++.+++.                   ...+..+.+..... +.
T Consensus        59 ~~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           59 VRLTQAKRILEIG-TL-GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPA  136 (248)
T ss_dssp             HHHHTCSEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCC
T ss_pred             HhhcCCCEEEEec-CC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCC
Confidence            3456789999998 44 488888999887  4699999988654                   11122233333322 27


Q ss_pred             ccEEEeCCChh----hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK----MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~~   99 (180)
                      ||+|+-.....    .+..+.+.|+|+|.++.-.
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            99987433322    5777889999999887653

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.88  E-value=0.0051  Score=48.39  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSK   51 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~   51 (180)
                      ++++.++||+||+|++|..+++.+...|+ +|+.+.++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            56789999999999999998888888899 688888875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.87  E-value=0.0035  Score=40.21  Aligned_cols=63  Identities=21%  Similarity=0.120  Sum_probs=44.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      ..+++|.| .|.+|..+++.+...|.+|+++++++++             .+..-.+.+.+..-.++|+++.+++..
T Consensus         6 ~~~v~I~G-~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~   81 (141)
T 3llv_A            6 RYEYIVIG-SEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD   81 (141)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence            46799999 6999999999999999999999987654             011111223332223789999988855

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.87  E-value=0.0065  Score=45.10  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            3578999999999999999988888999999998653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.87  E-value=0.015  Score=38.50  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=59.9

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-----------Ccc-hH--HHHH-HhHcC--CCc
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-----------EEP-DL--DAAL-KRWFP--QGI   70 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-----------~~~-~~--~~~~-~~~~~--~~~   70 (180)
                      .....++++++||-.| +|+ |..+..+++.. +.+|++++.++..           .-. .+  .... .....  +.|
T Consensus        18 ~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           18 ISALAPKPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             HHHHCCCTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred             HHHhcccCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence            3555788999999999 664 99999999887 5589998887643           000 00  0000 01111  479


Q ss_pred             cEEEeCCChh---hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGGK---MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~~---~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+++......   .+..+.+.|+|+|+++....
T Consensus        96 D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            9998655432   67888899999999987643

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.86  E-value=0.0053  Score=48.13  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             CCCC--CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCC
Q 041355           14 PKKG--EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSK   51 (180)
Q Consensus        14 ~~~g--~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~   51 (180)
                      ++++  .++||+||+|++|..+++.+...|+ +|+.+.++.
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            3444  8999999999999998888878898 788887763

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.008  Score=44.14  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHHHhHcCCCccEEEeCCChh-----hH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAALKRWFPQGIDIYFENVGGK-----ML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~   82 (180)
                      .|.+|.|.| .|.+|...++.++.+|++|++.+++.+.        ...++.+.+.     ..|+++-++...     .+
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~-----~aDvV~l~~p~~~~t~~li  214 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLK-----ESDVVTIHVPLVESTYHLI  214 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHH-----HCSEEEECCCCSTTTTTCB
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHh-----hCCEEEEecCCChHHhhhc
Confidence            578999999 9999999999999999999999887643        0011222121     368998887632     12


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..+++++.+++++..
T Consensus       215 ~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          215 NEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             CHHHHHHSCTTCEEEECSCG
T ss_pred             CHHHHhcCCCCeEEEECCCC
Confidence             3566888999999998763

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.85  E-value=0.00053  Score=48.07  Aligned_cols=87  Identities=11%  Similarity=0.043  Sum_probs=57.7

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-------------------CcchHHHHHHhHc-CC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-------------------EEPDLDAALKRWF-PQ   68 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~-~~   68 (180)
                      ......++++||-.| +| .|..+..+++.. +.+|++++.++..                   ...+..+.+.... .+
T Consensus        48 ~~~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  125 (233)
T 2gpy_A           48 HLLKMAAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP  125 (233)
T ss_dssp             HHHHHHCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSC
T ss_pred             HHHhccCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCC
Confidence            333456788999998 55 788899999987 5699999887553                   0001111111111 34


Q ss_pred             CccEEEeCCCh----hhHHHHHHhhccCCEEEEE
Q 041355           69 GIDIYFENVGG----KMLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        69 ~~d~~~d~~g~----~~~~~~~~~l~~~G~~v~~   98 (180)
                      .||+|+.....    ..+..+.+.|+++|+++..
T Consensus       126 ~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          126 LFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             CEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            79998865543    2566777889999999875

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.85  E-value=0.00042  Score=49.01  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|++|..+++.+.. |++|++++++++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~   39 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPE   39 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            368899999999999987776654 889999988754

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.84  E-value=0.0069  Score=42.81  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---CcchHHH------------HHHhH-cC-C
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---EEPDLDA------------ALKRW-FP-Q   68 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---~~~~~~~------------~~~~~-~~-~   68 (180)
                      +.....+.++++||..| +|+ |..+..+++..  +.+|++++.++..   ....+..            .+.+. .. +
T Consensus        88 ~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHcCCCCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            44566789999999999 664 89999999986  4699999986543   0000000            00111 22 3


Q ss_pred             CccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           69 GIDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        69 ~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      .+|+++......  .+..+.+.|+++|+++.+.
T Consensus       166 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          166 AYDGVALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            689988655533  7788889999999998874

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.83  E-value=0.0035  Score=46.65  Aligned_cols=62  Identities=15%  Similarity=0.207  Sum_probs=43.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCCC------------cchHHHHHHhHcCC----CccEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEKE------------EPDLDAALKRWFPQ----GIDIYFENVG   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~~------------~~~~~~~~~~~~~~----~~d~~~d~~g   78 (180)
                      +.+|||+||+|.+|..+++.+...| .+|+++.+++...            +-.-.+.+.....+    ++|++|.+++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~  124 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA  124 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCc
Confidence            4679999999999999999888889 7999988865420            00112233333332    7999999987

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.81  E-value=0.0026  Score=45.07  Aligned_cols=63  Identities=29%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-C---c----chH---HHHHHhHcCCCccEEEeCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-E---E----PDL---DAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~---~----~~~---~~~~~~~~~~~~d~~~d~~g   78 (180)
                      -.|.+++|+||+|++|..+++.+...|++|++++++++. .   .    .|+   .+.+.+... ++|+++.+.|
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~iD~lv~~Ag   90 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVK-EVDILVLNAG   90 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSC-CCSEEEECCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhc-CCCEEEECCC
Confidence            468899999999999999998888899999999887421 0   0    111   122222222 6999999987

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.81  E-value=0.0099  Score=42.27  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=56.0

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------Cc-------chHHHHHHhHcCCCccEEEeC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EE-------PDLDAALKRWFPQGIDIYFEN   76 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~-------~~~~~~~~~~~~~~~d~~~d~   76 (180)
                      ++++++||-.| +|+ |..++.+++ .|++|++++.++..          ..       .+..+.   ...+.||+++..
T Consensus       118 ~~~~~~VLDiG-cG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n  191 (254)
T 2nxc_A          118 LRPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGPFDLLVAN  191 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCCEEEEEEE
T ss_pred             cCCCCEEEEec-CCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---CcCCCCCEEEEC
Confidence            67899999998 665 888887777 46699999988765          00       011111   123479999865


Q ss_pred             CChh----hHHHHHHhhccCCEEEEEecc
Q 041355           77 VGGK----MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        77 ~g~~----~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      .-.+    .+..+.+.|+|+|+++..+..
T Consensus       192 ~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          192 LYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            5332    456667889999999887543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.80  E-value=0.0072  Score=45.27  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+|||+||+|.+|..+++.+...|.+|+++++++.
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999888888999999988753

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.79  E-value=0.0046  Score=48.38  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      .++++.++||+||+|++|..+++.+...|+ +|+.+.++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            357889999999999999998888777798 5888888753

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.79  E-value=0.0063  Score=45.44  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   35 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            5799999999999999988888899999998764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.79  E-value=0.0078  Score=41.93  Aligned_cols=87  Identities=11%  Similarity=0.065  Sum_probs=56.9

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------C-c------chHHHHHHhHcC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------E-E------PDLDAALKRWFP   67 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------~-~------~~~~~~~~~~~~   67 (180)
                      ...+.+++.+||-.| + +.|..++.+++.+  +.+|++++.+++.             . +      .+..+.+.....
T Consensus        50 ~~~~~~~~~~vLdiG-~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~  127 (221)
T 3dr5_A           50 ATTNGNGSTGAIAIT-P-AAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN  127 (221)
T ss_dssp             HHSCCTTCCEEEEES-T-THHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT
T ss_pred             HhhCCCCCCCEEEEc-C-CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC
Confidence            334445566999888 3 4688899999976  5799999988664             1 0      011122212214


Q ss_pred             CCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           68 QGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        68 ~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                      +.||+||-.....    .+..+.+.|+|+|.++.-
T Consensus       128 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          128 DSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             TCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             CCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            5899987544322    567888999999999864

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.79  E-value=0.0022  Score=45.03  Aligned_cols=84  Identities=13%  Similarity=0.022  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc--C--
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF--P--   67 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~--~--   67 (180)
                      ...++.+||-.| +| .|..++.+++.+  +.+|++++.+++.                   ...+..+.+....  +  
T Consensus        69 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           69 SLTGAKQVLEIG-VF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             HHHTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             HhcCCCEEEEec-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            345678999998 55 889999999987  4699999987654                   0112222233322  1  


Q ss_pred             CCccEEEe-CCChh---hHHHHHHhhccCCEEEEE
Q 041355           68 QGIDIYFE-NVGGK---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        68 ~~~d~~~d-~~g~~---~~~~~~~~l~~~G~~v~~   98 (180)
                      +.||++|- +....   .+..+.+.|+|+|.++.-
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            57999874 33222   577888999999999875

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.78  E-value=0.0079  Score=43.55  Aligned_cols=62  Identities=19%  Similarity=0.111  Sum_probs=44.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCCC-------------cchH--HHHHHhHcCCCccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEKE-------------EPDL--DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~~-------------~~~~--~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      ..+|+|+||+|.+|...++.+...| .+|+++++++++.             ..|+  .+.+.+... ++|.+|.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~-~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN-GAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT-TCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh-cCCEEEEeCCC
Confidence            4689999999999999988887778 8999999876530             0011  122333332 58999999873

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.77  E-value=0.0082  Score=43.69  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----cchHHHHHHhHcCCCccEEEeCCCh-h-h---H-HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----EPDLDAALKRWFPQGIDIYFENVGG-K-M---L-DA   84 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~d~~g~-~-~---~-~~   84 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++....     ..++.+.+.+     .|+++-++.. + +   + ..
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~-----aDiV~l~~P~t~~t~~li~~~  194 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQ-----SDFVLIAIPLTDKTRGMVNSR  194 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHH-----CSEEEECCCCCTTTTTCBSHH
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhc-----cCeEEEEeeccccchhhhhHH
Confidence            478999999 99999999999999999999998876541     1133333333     6899888763 2 1   2 45


Q ss_pred             HHHhhccCCEEEEEecc
Q 041355           85 VLLNMRLRGRIAVSSII  101 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~  101 (180)
                      .+..++++..+++++..
T Consensus       195 ~l~~mk~gailIN~aRG  211 (290)
T 3gvx_A          195 LLANARKNLTIVNVARA  211 (290)
T ss_dssp             HHTTCCTTCEEEECSCG
T ss_pred             HHhhhhcCceEEEeehh
Confidence            67788999999998754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.76  E-value=0.0053  Score=44.24  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-HHHH---------------hHcCCCccE
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-AALK---------------RWFPQGIDI   72 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-~~~~---------------~~~~~~~d~   72 (180)
                      .+...++++.+||-.| +|. |..+..+++..|.+|++++.+++.  -+.. +.+.               ...++.||+
T Consensus        57 ~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvd~s~~~--~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~  132 (287)
T 1kpg_A           57 LGKLGLQPGMTLLDVG-CGW-GATMMRAVEKYDVNVVGLTLSKNQ--ANHVQQLVANSENLRSKRVLLAGWEQFDEPVDR  132 (287)
T ss_dssp             HTTTTCCTTCEEEEET-CTT-SHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred             HHHcCCCCcCEEEEEC-Ccc-cHHHHHHHHHcCCEEEEEECCHHH--HHHHHHHHHhcCCCCCeEEEECChhhCCCCeeE
Confidence            3455678999999998 554 888889998789999999987543  0000 0000               011246898


Q ss_pred             EEeC-----CCh----hhHHHHHHhhccCCEEEEEec
Q 041355           73 YFEN-----VGG----KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~-----~g~----~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+..     ++.    ..+..+.++|+|+|+++....
T Consensus       133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            8754     221    256777889999999987654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.76  E-value=0.0029  Score=43.99  Aligned_cols=87  Identities=13%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc-C-
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF-P-   67 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~-~-   67 (180)
                      .....++.+||-.| +| .|..++.+++.+  +.+|++++.++..                   ...+..+.+.... . 
T Consensus        64 l~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~  141 (229)
T 2avd_A           64 LARLIQAKKALDLG-TF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG  141 (229)
T ss_dssp             HHHHTTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT
T ss_pred             HHHhcCCCEEEEEc-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC
Confidence            34456788999998 55 788899999876  4699999987654                   0112222322221 1 


Q ss_pred             --CCccEEEeCCCh----hhHHHHHHhhccCCEEEEEe
Q 041355           68 --QGIDIYFENVGG----KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        68 --~~~d~~~d~~g~----~~~~~~~~~l~~~G~~v~~~   99 (180)
                        +.||+++-....    ..+..+.+.|+++|.++...
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence              479998754332    25778889999999998753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.75  E-value=0.0058  Score=42.29  Aligned_cols=87  Identities=15%  Similarity=0.022  Sum_probs=56.8

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc--
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF--   66 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~--   66 (180)
                      ......++.+||-.| +| .|..++.+++.+  +.+|++++.+++.                   ...+..+.+....  
T Consensus        52 ~l~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  129 (223)
T 3duw_A           52 LLVQIQGARNILEIG-TL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE  129 (223)
T ss_dssp             HHHHHHTCSEEEEEC-CT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HHHHhhCCCEEEEec-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence            333456788999988 44 688888899887  5699999987653                   0112222222221  


Q ss_pred             -CCCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           67 -PQGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 -~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                       .+.||+||-.....    .+..+.+.|+|+|.++.-
T Consensus       130 ~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          130 KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence             14699987443322    567778899999987765

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.74  E-value=0.022  Score=42.00  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=29.3

Q ss_pred             CEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~   51 (180)
                      .+|||+||+|.+|..+++.+...  |.+|++++++.
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~   40 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT   40 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            47999999999999988877766  78999998864

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.74  E-value=0.011  Score=43.81  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C----cchHHHHHHhHcCCCccEEEeCCCh-h-h----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E----EPDLDAALKRWFPQGIDIYFENVGG-K-M----   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~----~~~~~~~~~~~~~~~~d~~~d~~g~-~-~----   81 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...    .    ..++.+.+.     ..|+++-++.. + +    
T Consensus       136 ~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~-----~aDvV~l~lPlt~~t~~li  209 (324)
T 3evt_A          136 TGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALA-----TANFIVNALPLTPTTHHLF  209 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHH-----HCSEEEECCCCCGGGTTCB
T ss_pred             cCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHh-----hCCEEEEcCCCchHHHHhc
Confidence            478999999 9999999999999999999999887654    1    112233333     26888887652 1 1    


Q ss_pred             HHHHHHhhccCCEEEEEecc
Q 041355           82 LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~~~~  101 (180)
                      -...+..++++..+++++..
T Consensus       210 ~~~~l~~mk~gailIN~aRG  229 (324)
T 3evt_A          210 STELFQQTKQQPMLINIGRG  229 (324)
T ss_dssp             SHHHHHTCCSCCEEEECSCG
T ss_pred             CHHHHhcCCCCCEEEEcCCC
Confidence            24566778888888888743

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.73  E-value=0.016  Score=41.15  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=52.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccEEEeCCChhh--------
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDIYFENVGGKM--------   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~d~~g~~~--------   81 (180)
                      +|+|+||+|.+|..+++.+. .|.+|+++++++..         +.+.+.+.+...   ++|+++.|.|...        
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~vi~~a~~~~~~~~~~~~   77 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKK---RPDVIINAAAMTDVDKCEIEK   77 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHH---CCSEEEECCCCCCHHHHHHCH
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCCCCceeccCCHHHHHHHHHhc---CCCEEEECCcccChhhhhhCH
Confidence            58999999999999888777 48899999887531         112222222222   6899999987321        


Q ss_pred             ----------HHHHHHhh-ccCCEEEEEecccc
Q 041355           82 ----------LDAVLLNM-RLRGRIAVSSIISQ  103 (180)
Q Consensus        82 ----------~~~~~~~l-~~~G~~v~~~~~~~  103 (180)
                                ...+++.+ +.+++++.+++...
T Consensus        78 ~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~  110 (273)
T 2ggs_A           78 EKAYKINAEAVRHIVRAGKVIDSYIVHISTDYV  110 (273)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCCeEEEEeccee
Confidence                      12223333 34578888877654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.73  E-value=0.0065  Score=45.64  Aligned_cols=63  Identities=21%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCCC------c-------chH--HHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEKE------E-------PDL--DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~~------~-------~~~--~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+.+|||+||+|.+|..+++.+...| .+|++++++....      .       .|+  .+.+.+... ++|++|.|++.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~-~~d~Vih~A~~  109 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD-EYDYVFHLATY  109 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS-CCSEEEECCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh-CCCEEEECCCc
Confidence            35689999999999999999888889 8999998865320      0       011  123333333 79999999873

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.73  E-value=0.0023  Score=49.96  Aligned_cols=86  Identities=15%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchH-----HHHHHhHcCCCccEEEeCCChh-hH-HHHHH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDL-----DAALKRWFPQGIDIYFENVGGK-ML-DAVLL   87 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~d~~g~~-~~-~~~~~   87 (180)
                      -.|.+|+|.| .|.+|..+++.++.+|++|++++++.....+..     ...+.+.. ...|+++-+++.. .+ ...+.
T Consensus       275 L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell-~~aDiVi~~~~t~~lI~~~~l~  352 (494)
T 3d64_A          275 IAGKIAVVAG-YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAA-DKADIFVTATGNYHVINHDHMK  352 (494)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHT-TTCSEEEECSSSSCSBCHHHHH
T ss_pred             cCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHH-hcCCEEEECCCcccccCHHHHh
Confidence            4789999999 999999999999999999999988653200000     00122222 2589999998655 23 46678


Q ss_pred             hhccCCEEEEEeccc
Q 041355           88 NMRLRGRIAVSSIIS  102 (180)
Q Consensus        88 ~l~~~G~~v~~~~~~  102 (180)
                      .++++..+++++...
T Consensus       353 ~MK~gAilINvgrg~  367 (494)
T 3d64_A          353 AMRHNAIVCNIGHFD  367 (494)
T ss_dssp             HCCTTEEEEECSSSS
T ss_pred             hCCCCcEEEEcCCCc
Confidence            899999999987654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.71  E-value=0.00064  Score=47.94  Aligned_cols=84  Identities=7%  Similarity=-0.071  Sum_probs=55.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEE-Ee
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIY-FE   75 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~-~d   75 (180)
                      ..+|.+||-.| +| .|..+..+++..+.+++++..++..                 ...+..........+.||.+ +|
T Consensus        58 ~~~G~rVLdiG-~G-~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           58 SSKGGRVLEVG-FG-MAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEEC-CT-TSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             ccCCCeEEEEC-CC-ccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEe
Confidence            36899999999 55 5888888888777788888877543                 00112222222223478887 56


Q ss_pred             CCCh-----------hhHHHHHHhhccCCEEEEEe
Q 041355           76 NVGG-----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        76 ~~g~-----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      ++..           ..+..+.++|+|+|+++.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            5432           13456778999999998763

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.71  E-value=0.0028  Score=46.91  Aligned_cols=36  Identities=8%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~   51 (180)
                      .+.+|||+||+|.+|..+++.+...|  .+|++.++..
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            45689999999999999998888888  6888887654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.71  E-value=0.01  Score=43.67  Aligned_cols=79  Identities=14%  Similarity=0.011  Sum_probs=53.2

Q ss_pred             CEEEEecCCchHHHHHHHHH-H-HcCCEEEEEeCCCCCC-c------------chHHHHHHhHcCC-CccEEEeCCChh-
Q 041355           18 EYVYVSAASGAVGQLVGQFA-K-LAGCYVVGSAGSKEKE-E------------PDLDAALKRWFPQ-GIDIYFENVGGK-   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqla-k-~~g~~vi~~~~~~~~~-~------------~~~~~~~~~~~~~-~~d~~~d~~g~~-   80 (180)
                      -+|.|.| +|.+|...+..+ + .-+++++++++.+... .            .+..+.+.+.+.+ ++|++|+|++.+ 
T Consensus         5 irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~   83 (312)
T 1nvm_B            5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (312)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHH
Confidence            4789999 899999888777 4 3467777776655221 0            1222334333333 799999999976 


Q ss_pred             hHHHHHHhhcc--CCEEEE
Q 041355           81 MLDAVLLNMRL--RGRIAV   97 (180)
Q Consensus        81 ~~~~~~~~l~~--~G~~v~   97 (180)
                      ....+...++.  +..++.
T Consensus        84 h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           84 HVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEE
Confidence            66777777877  777665

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.70  E-value=0.01  Score=44.05  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc------chHHHHHHhHcCCCccEEEeCCChh-----hH-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE------PDLDAALKRWFPQGIDIYFENVGGK-----ML-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~d~~g~~-----~~-~   83 (180)
                      .|.+|.|.| .|.+|...++.++.+|++|++.+++.....      .++.+.+.     ..|+++.++...     .+ .
T Consensus       144 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~-----~aDvV~~~~P~~~~t~~li~~  217 (333)
T 1dxy_A          144 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK-----QSDVIDLHVPGIEQNTHIINE  217 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHH-----HCSEEEECCCCCGGGTTSBCH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHh-----cCCEEEEcCCCchhHHHHhCH
Confidence            578999999 999999999999999999999888765310      12222222     368999887632     12 4


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..+++++.+++++..
T Consensus       218 ~~l~~mk~ga~lIn~srg  235 (333)
T 1dxy_A          218 AAFNLMKPGAIVINTARP  235 (333)
T ss_dssp             HHHHHSCTTEEEEECSCT
T ss_pred             HHHhhCCCCcEEEECCCC
Confidence            567889999999988653

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.69  E-value=0.0088  Score=44.04  Aligned_cols=80  Identities=21%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC--------cchHHHHHHhHcCCCccEEEeCCChh-----hH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------EPDLDAALKRWFPQGIDIYFENVGGK-----ML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~   82 (180)
                      .|.+|.|.| .|.+|...++.++.+|++|++.+++.+..        ..++.+.+.     ..|+++-++...     .+
T Consensus       141 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~-----~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          141 AGKTIGIVG-FGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLK-----NSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHH-----HCSEEEECCCCCTTSCCSB
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHh-----hCCEEEEeccCChHHHHhh
Confidence            578999999 99999999999999999999988876430        011222222     368999887632     12


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..+++++.+++++..
T Consensus       215 ~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCG
T ss_pred             CHHHHhcCCCCCEEEECCCC
Confidence             4566788999888888663

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.68  E-value=0.011  Score=41.89  Aligned_cols=89  Identities=9%  Similarity=0.070  Sum_probs=59.3

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc-ch--H-HHHHHh--HcCCCccEEEe
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE-PD--L-DAALKR--WFPQGIDIYFE   75 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~-~~--~-~~~~~~--~~~~~~d~~~d   75 (180)
                      +...++++.+||-.| +| .|..+..+++..+++|++++.++..        .. ..  + ...+.+  ...+.||+|+.
T Consensus        49 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  126 (266)
T 3ujc_A           49 SDIELNENSKVLDIG-SG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS  126 (266)
T ss_dssp             TTCCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEE
T ss_pred             HhcCCCCCCEEEEEC-CC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeH
Confidence            445678899999998 55 7888999998778899999987642        00 00  0 000011  11237999987


Q ss_pred             CCChh---------hHHHHHHhhccCCEEEEEec
Q 041355           76 NVGGK---------MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        76 ~~g~~---------~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +..-.         .+..+.+.|+|+|+++....
T Consensus       127 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          127 RDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            53211         45677789999999988754

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.68  E-value=0.0036  Score=45.57  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=31.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|||+||+|.+|...++.+...|.+|+++++....
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSG   36 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            69999999999999999998899999999886553

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.68  E-value=0.012  Score=42.92  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc---------------chH--HHHHHhHcCCCccEEEeCCChh
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------------PDL--DAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~---------------~~~--~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      .+|+|+||+|.+|...++.+...|.+|+++++++....               .|+  .+.+.+... ++|++|.+++..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~-~~d~vi~~a~~~   90 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK-KVDVVISALAFP   90 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT-TCSEEEECCCGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc-CCCEEEECCchh
Confidence            47999999999999999988888999999998764200               011  123333332 589999998743


Q ss_pred             ---hHHHHHHhhccC---CEEE
Q 041355           81 ---MLDAVLLNMRLR---GRIA   96 (180)
Q Consensus        81 ---~~~~~~~~l~~~---G~~v   96 (180)
                         ....++..++..   .+++
T Consensus        91 ~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           91 QILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             GSTTHHHHHHHHHHHCCCCEEE
T ss_pred             hhHHHHHHHHHHHhcCCCCEEE
Confidence               234444444332   4665

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.65  E-value=0.0046  Score=45.81  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHHH----------------------
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLDA----------------------   60 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~~----------------------   60 (180)
                      +.....+.+|++||-.| +|+ |..++.+++..|  .+|++++.++..   ....+..                      
T Consensus        97 ~l~~l~~~~g~~VLDiG-~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHhcCCCCCCEEEEeC-CCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            33556789999999998 665 888888998876  589999887543   0000000                      


Q ss_pred             HHH----hHcCCCccEEEeCCChh--hHHHHHHhhccCCEEEEEec
Q 041355           61 ALK----RWFPQGIDIYFENVGGK--MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        61 ~~~----~~~~~~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .+.    ....+.||+|+-.....  .+..+.++|+|+|+++.+..
T Consensus       175 d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             CTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             ChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            000    01122589887655443  57888899999999987643

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.65  E-value=0.0037  Score=46.49  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=44.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC-----CEEEEEeCCCCCC----------cchH--HHHHHhHcCC-C-ccEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG-----CYVVGSAGSKEKE----------EPDL--DAALKRWFPQ-G-IDIYFENV   77 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g-----~~vi~~~~~~~~~----------~~~~--~~~~~~~~~~-~-~d~~~d~~   77 (180)
                      +.+|||+||+|.+|...++.+...|     .+|++++++....          ..|+  .+.+.+...+ + +|++|.|+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            3579999999999999988887788     8999999875420          0011  2234444444 3 99999998


Q ss_pred             C
Q 041355           78 G   78 (180)
Q Consensus        78 g   78 (180)
                      +
T Consensus        81 ~   81 (364)
T 2v6g_A           81 W   81 (364)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.62  E-value=0.0029  Score=49.24  Aligned_cols=86  Identities=16%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchH-----HHHHHhHcCCCccEEEeCCChh-hH-HHHHH
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDL-----DAALKRWFPQGIDIYFENVGGK-ML-DAVLL   87 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~d~~g~~-~~-~~~~~   87 (180)
                      -.|.+|+|.| .|.+|..+++.++.+|++|+++.++.....+..     ...+.+.. ...|+++-+.+.. .+ ...+.
T Consensus       255 l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell-~~aDiVi~~~~t~~lI~~~~l~  332 (479)
T 1v8b_A          255 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIV-DKGDFFITCTGNVDVIKLEHLL  332 (479)
T ss_dssp             CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHT-TTCSEEEECCSSSSSBCHHHHT
T ss_pred             cCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHH-hcCCEEEECCChhhhcCHHHHh
Confidence            4789999999 999999999999999999999988653200000     00122222 2579999887655 22 35667


Q ss_pred             hhccCCEEEEEeccc
Q 041355           88 NMRLRGRIAVSSIIS  102 (180)
Q Consensus        88 ~l~~~G~~v~~~~~~  102 (180)
                      .++++..+++++...
T Consensus       333 ~MK~gailiNvgrg~  347 (479)
T 1v8b_A          333 KMKNNAVVGNIGHFD  347 (479)
T ss_dssp             TCCTTCEEEECSSTT
T ss_pred             hcCCCcEEEEeCCCC
Confidence            889999999997654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.62  E-value=0.014  Score=41.30  Aligned_cols=84  Identities=12%  Similarity=0.044  Sum_probs=56.2

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc-----
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF-----   66 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~-----   66 (180)
                      ...++.+||-.| + +.|..++.+++.+  +.+|++++.+++.                   ...+..+.+....     
T Consensus        76 ~~~~~~~VLeiG-~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           76 KLINAKNTMEIG-V-YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HHTTCCEEEEEC-C-GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             HhhCcCEEEEeC-C-CcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCC
Confidence            345678999988 3 4688888999886  5799999998764                   0112222222221     


Q ss_pred             CCCccEEEeCCCh----hhHHHHHHhhccCCEEEEE
Q 041355           67 PQGIDIYFENVGG----KMLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 ~~~~d~~~d~~g~----~~~~~~~~~l~~~G~~v~~   98 (180)
                      .+.||++|-....    ..+..+.+.|+|+|.++.-
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3579998743322    1567788999999999764

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.62  E-value=0.0081  Score=44.26  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=30.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~   52 (180)
                      +|||+||+|.+|..+++.+... |.+|++++++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   36 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            6899999999999999888877 899999998754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.60  E-value=0.0059  Score=44.03  Aligned_cols=78  Identities=21%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLR   92 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~   92 (180)
                      -.|.+++|.|++..+|..+.+++...  |++|.++.+.    ..++.+.+++     +|+++-++|.+.+ ---..++++
T Consensus       156 l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~----t~~L~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~G  225 (281)
T 2c2x_A          156 IAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG----TRDLPALTRQ-----ADIVVAAVGVAHL-LTADMVRPG  225 (281)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT----CSCHHHHHTT-----CSEEEECSCCTTC-BCGGGSCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc----hhHHHHHHhh-----CCEEEECCCCCcc-cCHHHcCCC
Confidence            37899999997778899999999988  8898876553    3455555543     7999999997743 111346888


Q ss_pred             CEEEEEeccc
Q 041355           93 GRIAVSSIIS  102 (180)
Q Consensus        93 G~~v~~~~~~  102 (180)
                      ..++.++...
T Consensus       226 avVIDVgi~r  235 (281)
T 2c2x_A          226 AAVIDVGVSR  235 (281)
T ss_dssp             CEEEECCEEE
T ss_pred             cEEEEccCCC
Confidence            8888888754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.60  E-value=0.0041  Score=42.16  Aligned_cols=87  Identities=18%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---Cc---------chH------HHHHHhHcCCCcc
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EE---------PDL------DAALKRWFPQGID   71 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~---------~~~------~~~~~~~~~~~~d   71 (180)
                      ..++++++||-.| +|+ |..+..+++..+  .+|++++.+++.   ..         ..+      ...+....++.||
T Consensus        18 ~~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           18 MFVKEGDTVVDAT-CGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             HHCCTTCEEEESC-CTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred             hcCCCCCEEEEcC-CCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence            4578999999998 554 888889998864  599999887653   00         000      0011112234799


Q ss_pred             EEEeCCCh----------------hhHHHHHHhhccCCEEEEEec
Q 041355           72 IYFENVGG----------------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~d~~g~----------------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +++-..+-                ..+..+.+.|+++|+++....
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            98754421                257778889999999987753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.57  E-value=0.0071  Score=47.75  Aligned_cols=38  Identities=13%  Similarity=-0.025  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEE-eCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGS-AGS   50 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~-~~~   50 (180)
                      .++++.++||+||+|++|..+++.+...|++ |+.+ .++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3578899999999999999988888778986 5555 565

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.57  E-value=0.012  Score=42.10  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---CcchHHHH--------------HHhH-c-
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---EEPDLDAA--------------LKRW-F-   66 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---~~~~~~~~--------------~~~~-~-   66 (180)
                      +.....+.++++||-.| +| .|..+..+++..  +.+|++++.+++.   ....+...              +.+. . 
T Consensus        91 i~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAG-AG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHcCCCCCCEEEEEc-cc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence            44567789999999998 55 788899999875  4589999886543   00001000              0000 1 


Q ss_pred             CCCccEEEeCCChh--hHHHHHHhhccCCEEEEEec
Q 041355           67 PQGIDIYFENVGGK--MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        67 ~~~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .+.+|+++......  .+..+.+.|+++|+++.+..
T Consensus       169 ~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          169 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            23689987655533  78888899999999988743

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.55  E-value=0.078  Score=38.39  Aligned_cols=80  Identities=14%  Similarity=-0.044  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-----C---cchHHHHHHhHcCCCccEEEeCCChh---h--
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-----E---EPDLDAALKRWFPQGIDIYFENVGGK---M--   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-----~---~~~~~~~~~~~~~~~~d~~~d~~g~~---~--   81 (180)
                      .+.+++|.| +|++|.+++..++..|+ +|+++.|+.++     .   ...+ +.+.+ .  .+|++++|+...   .  
T Consensus       121 ~~k~vlvlG-aGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~-~~l~~-l--~~DivInaTp~Gm~~~~~  195 (282)
T 3fbt_A          121 KNNICVVLG-SGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISY-DELSN-L--KGDVIINCTPKGMYPKEG  195 (282)
T ss_dssp             TTSEEEEEC-SSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEH-HHHTT-C--CCSEEEECSSTTSTTSTT
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccH-HHHHh-c--cCCEEEECCccCccCCCc
Confidence            588999999 68899999998888999 88888887654     0   0111 12222 2  689999998532   1  


Q ss_pred             -HHHHHHhhccCCEEEEEec
Q 041355           82 -LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 -~~~~~~~l~~~G~~v~~~~  100 (180)
                       ..-....++++..++.+..
T Consensus       196 ~~pi~~~~l~~~~~v~DlvY  215 (282)
T 3fbt_A          196 ESPVDKEVVAKFSSAVDLIY  215 (282)
T ss_dssp             CCSSCHHHHTTCSEEEESCC
T ss_pred             cCCCCHHHcCCCCEEEEEee
Confidence             1112345677776666643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.55  E-value=0.0025  Score=42.77  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchH--------------HHHHHhHcCCCccEEE
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDL--------------DAALKRWFPQGIDIYF   74 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~--------------~~~~~~~~~~~~d~~~   74 (180)
                      ..+++|++||=.| +| .|..+..+++. +.+|++++.+++.   .....              ...+....++.||+++
T Consensus        18 ~~~~~~~~vLDiG-cG-~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           18 EVLDDESIVVDAT-MG-NGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             TTCCTTCEEEESC-CT-TSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             HhCCCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            4578999999888 55 48888888887 8899999998654   00000              0011112234699887


Q ss_pred             eCCC-------------h---hhHHHHHHhhccCCEEEEEec
Q 041355           75 ENVG-------------G---KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        75 d~~g-------------~---~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      -..+             .   ..+..+.+.|+|+|+++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            5421             1   134667789999999987754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.54  E-value=0.0064  Score=45.20  Aligned_cols=82  Identities=13%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHH------HHHhHcCCCccEEEeCCChh-----hH-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA------ALKRWFPQGIDIYFENVGGK-----ML-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~d~~g~~-----~~-~   83 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...  .....      .+.+.. ...|+++-|+...     .+ .
T Consensus       164 ~g~tvgIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~  239 (335)
T 2g76_A          164 NGKTLGILG-LGRIGREVATRMQSFGMKTIGYDPIISP--EVSASFGVQQLPLEEIW-PLCDFITVHTPLLPSTTGLLND  239 (335)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSCH--HHHHHTTCEECCHHHHG-GGCSEEEECCCCCTTTTTSBCH
T ss_pred             CcCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcch--hhhhhcCceeCCHHHHH-hcCCEEEEecCCCHHHHHhhCH
Confidence            578999999 9999999999999999999998876542  00000      111111 1479999887632     12 3


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..+++++.+++++..
T Consensus       240 ~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          240 NTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             HHHTTSCTTEEEEECSCT
T ss_pred             HHHhhCCCCcEEEECCCc
Confidence            567788999999988763

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.53  E-value=0.0043  Score=45.07  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=31.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +.+|+|+||+|.+|...++.+...|.+|+++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            45799999999999999988888899999998875

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.52  E-value=0.0072  Score=43.85  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCCC------------cchHHHHHHhHcCC----CccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEKE------------EPDLDAALKRWFPQ----GIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~~------------~~~~~~~~~~~~~~----~~d~~~d~~g   78 (180)
                      +|||+||+|.+|...++.+...| .+|+++.+++...            +-.-.+.+.+...+    ++|+++.|.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~   77 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcc
Confidence            48999999999999998888889 7999988875431            00112234444433    6999999987

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.51  E-value=0.016  Score=42.63  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|||+||+|.+|..+++.+...|.+|+++++.
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   34 (347)
T 1orr_A            3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   34 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence            69999999999999998888889999999864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.50  E-value=0.014  Score=40.42  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcC------CEEEEEeCCCCC---CcchHHHH----------------HHh---
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAG------CYVVGSAGSKEK---EEPDLDAA----------------LKR---   64 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g------~~vi~~~~~~~~---~~~~~~~~----------------~~~---   64 (180)
                      .++++++||-.| +|+ |..+..+++..+      .+|++++.+++.   ........                ..+   
T Consensus        77 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVG-SGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEES-CTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEEC-CCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            578999999999 665 888999999876      599999887543   00000000                000   


Q ss_pred             ---HcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           65 ---WFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        65 ---~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                         ...+.||+|+...... .+..+.+.|+++|+++....
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence               1123689988766544 66788899999999987744

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.50  E-value=0.009  Score=39.95  Aligned_cols=86  Identities=23%  Similarity=0.273  Sum_probs=58.2

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcC-
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFP-   67 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~-   67 (180)
                      +.....+.++++||-.| +|+ |..+..+++.. .+|++++.++..                   ...+..+.   ... 
T Consensus        25 ~~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~   98 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVG-CGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKI   98 (192)
T ss_dssp             HHHHHCCCTTCEEEEES-CTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTS
T ss_pred             HHHhcCCCCCCEEEEEC-CCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---cccC
Confidence            34556788999999998 565 88888888876 799999887543                   01112221   112 


Q ss_pred             CCccEEEeCCCh----hhHHHHHHhhccCCEEEEEe
Q 041355           68 QGIDIYFENVGG----KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        68 ~~~d~~~d~~g~----~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +.+|+++.....    ..+..+.+.|+++|+++...
T Consensus        99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A           99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            378998865441    25667778899999988763

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.49  E-value=0.017  Score=42.89  Aligned_cols=80  Identities=23%  Similarity=0.165  Sum_probs=57.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC------cc-hHHHHHHhHcCCCccEEEeCCChh--h---H-
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE------EP-DLDAALKRWFPQGIDIYFENVGGK--M---L-   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~------~~-~~~~~~~~~~~~~~d~~~d~~g~~--~---~-   82 (180)
                      .|.+|.|.| .|.+|...++.++.+|++|++.+++....      .. ++.+.+.     ..|+++.++...  +   + 
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~-----~aDvV~l~~p~~~~t~~li~  218 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYK-----QADVISLHVPDVPANVHMIN  218 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHH-----HCSEEEECSCCCGGGTTCBS
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHh-----hCCEEEEcCCCcHHHHHHHh
Confidence            467999999 99999999999999999999988875421      00 1211121     368999888632  1   2 


Q ss_pred             HHHHHhhccCCEEEEEecc
Q 041355           83 DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~~  101 (180)
                      ...+..+++++.+++++..
T Consensus       219 ~~~l~~mk~ga~lIn~arg  237 (333)
T 1j4a_A          219 DESIAKMKQDVVIVNVSRG  237 (333)
T ss_dssp             HHHHHHSCTTEEEEECSCG
T ss_pred             HHHHhhCCCCcEEEECCCC
Confidence            3466788999888888664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.49  E-value=0.0059  Score=42.29  Aligned_cols=85  Identities=12%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHcC---
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWFP---   67 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~---   67 (180)
                      ....++.+||-.| +| .|..++.+++.+  +.+|++++.+++.                   ...+..+.+.....   
T Consensus        60 ~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           60 VKLMQAKKVIDIG-TF-TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHHHTCSEEEEEC-CT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTC
T ss_pred             HHhhCCCEEEEeC-Cc-chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccC
Confidence            3445788999888 44 488888999876  4699999998653                   01122233322221   


Q ss_pred             -CCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           68 -QGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        68 -~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                       +.||+++-.....    .+..+.+.|+|+|.++.-
T Consensus       138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          138 AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence             5799987443322    467778899999999865

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=96.49  E-value=0.012  Score=47.99  Aligned_cols=37  Identities=16%  Similarity=0.112  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|+++++...
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~   46 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN   46 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            4678999999999999999888888999999987643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.48  E-value=0.019  Score=40.44  Aligned_cols=90  Identities=14%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHH-----H-------HHhH-cCCCcc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDA-----A-------LKRW-FPQGID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~-----~-------~~~~-~~~~~d   71 (180)
                      +.....++++.+||-.| +|+ |..+..+++..+.+|++++.++..   .......     .       +.+. ..+.||
T Consensus        28 l~~~~~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  105 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLG-SGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCD  105 (256)
T ss_dssp             HHHHTCCCTTCEEEEET-CTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEE
T ss_pred             HHHhcCCCCCCEEEEEC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCC
Confidence            44566788999999998 554 888899999889999999987543   0000000     0       0000 123689


Q ss_pred             EEEeCCC-----h--hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYFENVG-----G--KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d~~g-----~--~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+-...     .  ..+..+.++|+|+|+++...
T Consensus       106 ~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          106 VAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            8875221     1  14677778899999998764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.026  Score=42.01  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----cchHHHHHHhHcCCCccEEEeCCCh-h----hH-HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----EPDLDAALKRWFPQGIDIYFENVGG-K----ML-DA   84 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~d~~g~-~----~~-~~   84 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++....     ..++.+.+.     ..|+++-++.. +    .+ ..
T Consensus       170 ~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~-----~aDvVil~vP~t~~t~~li~~~  243 (340)
T 4dgs_A          170 KGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLAR-----DSDVLAVCVAASAATQNIVDAS  243 (340)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHH-----TCSEEEECC----------CHH
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHh-----cCCEEEEeCCCCHHHHHHhhHH
Confidence            478999999 99999999999999999999988876541     113333333     36899888762 2    12 45


Q ss_pred             HHHhhccCCEEEEEecc
Q 041355           85 VLLNMRLRGRIAVSSII  101 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~  101 (180)
                      .+..++++..+++++..
T Consensus       244 ~l~~mk~gailIN~aRG  260 (340)
T 4dgs_A          244 LLQALGPEGIVVNVARG  260 (340)
T ss_dssp             HHHHTTTTCEEEECSCC
T ss_pred             HHhcCCCCCEEEECCCC
Confidence            56788999999888654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.46  E-value=0.0057  Score=44.78  Aligned_cols=90  Identities=10%  Similarity=0.025  Sum_probs=58.8

Q ss_pred             HHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHH------------HHHHhH--cCCCcc
Q 041355           10 LVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLD------------AALKRW--FPQGID   71 (180)
Q Consensus        10 ~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~------------~~~~~~--~~~~~d   71 (180)
                      +... ++++++||-.| +| .|..+..+++..|++|++++.+++.   ..+...            ..+.+.  ..+.||
T Consensus       110 ~~l~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  187 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAG-CG-RGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVT  187 (312)
T ss_dssp             TTSCCCCTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred             HHhccCCCCCEEEEec-CC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEe
Confidence            4444 78899999998 44 4888888998878999999987653   000000            000011  123789


Q ss_pred             EEEeCCC------hhhHHHHHHhhccCCEEEEEecc
Q 041355           72 IYFENVG------GKMLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        72 ~~~d~~g------~~~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +|+....      ...+..+.++|+|+|+++.....
T Consensus       188 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          188 ASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            9876322      12677888899999999877543

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=96.45  E-value=0.014  Score=42.39  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=28.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|||+||+|.+|..+++.+...|++|+++++.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~   33 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNL   33 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            58999999999999998888889999998874

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.45  E-value=0.011  Score=40.91  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHHH---------H-------HHhH--cCCCc
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLDA---------A-------LKRW--FPQGI   70 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~~---------~-------~~~~--~~~~~   70 (180)
                      ++++++||-.| +|+ |..+..+++..|  .+|++++.++..   .......         .       ....  ..+.|
T Consensus        75 ~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVG-SGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEET-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             CCCCCEEEEEc-CCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCc
Confidence            78999999998 554 888889998876  589999887543   0000000         0       0000  12368


Q ss_pred             cEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+++...... .+..+.+.|+|+|+++....
T Consensus       153 D~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          153 DAIHVGAAAPVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCchHHHHHHHHHhcCCCcEEEEEEe
Confidence            9987665544 56788899999999987643

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.44  E-value=0.0039  Score=44.46  Aligned_cols=85  Identities=19%  Similarity=0.059  Sum_probs=54.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchH--HHHHHhHcCCCccEEEeCCChh---h---
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDL--DAALKRWFPQGIDIYFENVGGK---M---   81 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~--~~~~~~~~~~~~d~~~d~~g~~---~---   81 (180)
                      .+|||+||+|.+|..+++.+...|.+|+++++++..        -..|+  .+.+.+... ++|++|.+.+..   .   
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~a~~~~~~~~~~   81 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVK-DCDGIIHLGGVSVERPWND   81 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHT-TCSEEEECCSCCSCCCHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHc-CCCEEEECCcCCCCCCHHH
Confidence            479999999999999888888788999999887652        00111  122333322 589999998631   1   


Q ss_pred             --------HHHHHHhhcc--CCEEEEEecccc
Q 041355           82 --------LDAVLLNMRL--RGRIAVSSIISQ  103 (180)
Q Consensus        82 --------~~~~~~~l~~--~G~~v~~~~~~~  103 (180)
                              ...+++.+.+  .++++.+++...
T Consensus        82 ~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  113 (267)
T 3ay3_A           82 ILQANIIGAYNLYEAARNLGKPRIVFASSNHT  113 (267)
T ss_dssp             HHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHH
Confidence                    1233333333  368888877643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.44  E-value=0.0046  Score=43.06  Aligned_cols=86  Identities=17%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcC-------CEEEEEeCCCCC---CcchHHHH------H----------Hh-H
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAG-------CYVVGSAGSKEK---EEPDLDAA------L----------KR-W   65 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-------~~vi~~~~~~~~---~~~~~~~~------~----------~~-~   65 (180)
                      .++++++||-.| +|+ |..+..+++..+       .+|++++.+++.   ..+.....      .          .+ .
T Consensus        81 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           81 HLKPGARILDVG-SGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TCCTTCEEEEES-CTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             hCCCCCEEEEEC-CCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence            478999999999 665 888889998776       489999987653   00111100      0          00 0


Q ss_pred             cC-CCccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           66 FP-QGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        66 ~~-~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .. +.||+|+.+.... ....+.+.|+++|+++..-.
T Consensus       159 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          159 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEe
Confidence            11 3689998776644 55778899999999987644

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.42  E-value=0.022  Score=41.64  Aligned_cols=35  Identities=11%  Similarity=0.033  Sum_probs=31.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+|+|+||+|.+|...++.+...|.+|+++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            35699999999999999988888899999999876

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.42  E-value=0.02  Score=42.74  Aligned_cols=80  Identities=19%  Similarity=0.129  Sum_probs=59.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--C----cchHHHHHHhHcCCCccEEEeCCCh--h----hHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--E----EPDLDAALKRWFPQGIDIYFENVGG--K----MLD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~----~~~~~~~~~~~~~~~~d~~~d~~g~--~----~~~   83 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++...  .    ..++.+.+.     ..|+++-++..  +    .-.
T Consensus       147 ~gktvgIiG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~-----~aDvV~l~~Plt~~t~~li~~  220 (343)
T 2yq5_A          147 YNLTVGLIG-VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLK-----EADIVSLHTPLFPSTENMIGE  220 (343)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHH-----HCSEEEECCCCCTTTTTCBCH
T ss_pred             CCCeEEEEe-cCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHh-----cCCEEEEcCCCCHHHHHHhhH
Confidence            478999999 9999999999999999999999987653  0    112333333     36898888763  1    124


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..++++..+++++..
T Consensus       221 ~~l~~mk~gailIN~aRg  238 (343)
T 2yq5_A          221 KQLKEMKKSAYLINCARG  238 (343)
T ss_dssp             HHHHHSCTTCEEEECSCG
T ss_pred             HHHhhCCCCcEEEECCCC
Confidence            567788999999998754

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.40  E-value=0.004  Score=42.49  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      +++|+||+|++|..+++.+...  +|+++++++++                  +.+++...+.+  .+++|+++.+.|
T Consensus         2 ~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~vi~~ag   75 (207)
T 2yut_A            2 RVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEE--AGPLDLLVHAVG   75 (207)
T ss_dssp             EEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHH--HCSEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHh--cCCCCEEEECCC
Confidence            6899999999999877766555  99988886532                  11112222222  247999999887

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.39  E-value=0.0068  Score=44.20  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=40.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC---------CcchHHHHHHhHcC-CCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK---------EEPDLDAALKRWFP-QGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~---------~~~~~~~~~~~~~~-~~~d~~~d~~g   78 (180)
                      +|||+||+|.+|..+++.+...  |.+|++++++...         +-.+ .+.+.+... .++|++|.+.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSN-RDEIDRAVEKYSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTC-HHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCC-HHHHHHHHhhcCCcEEEECCc
Confidence            4899999999999988877666  6789988876432         1011 112222222 26999999987

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.36  E-value=0.03  Score=38.82  Aligned_cols=90  Identities=13%  Similarity=0.035  Sum_probs=58.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc---chHH-HHHHh-H-cCCCccEE
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE---PDLD-AALKR-W-FPQGIDIY   73 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~---~~~~-~~~~~-~-~~~~~d~~   73 (180)
                      +.+...+.++++||-.| +|+ |..+..+++.. .+|++++.++..        ..   -.+. ....+ . ..+.||+|
T Consensus        62 ~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  138 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIG-TGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (231)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHhcCCCCCCEEEEEc-CCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence            44566788999999998 664 88888888764 799999887543        00   0000 00001 1 12368998


Q ss_pred             EeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           74 FENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        74 ~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +....-. ....+.+.|+|+|+++....
T Consensus       139 ~~~~~~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          139 VVWATAPTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             EECCcHHHHHHHHHHHcCCCcEEEEEEc
Confidence            8765544 44677789999999987754

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=96.36  E-value=0.019  Score=42.18  Aligned_cols=32  Identities=22%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|||+||+|.+|..+++.+...|++|+++++.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~   33 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            58999999999999998888889999988753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.34  E-value=0.04  Score=40.57  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      .|.+++|.| +|++|.+++..+...|+ +|+++.|+++
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~Ga~~V~i~nR~~~  189 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALDGVKEISIFNRKDD  189 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHCCCCEEEEEECCCc
Confidence            688999999 58999999999999999 8988888743

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.34  E-value=0.0068  Score=48.70  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|+.++|+||++++|.+.++.+...|++|+++++..
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~   42 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGG   42 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            478899999999999999998888999999887643

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.34  E-value=0.036  Score=40.73  Aligned_cols=80  Identities=21%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---cchHHHHHHhHcCCCccEEEeCCChh-----hH-HHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---EPDLDAALKRWFPQGIDIYFENVGGK-----ML-DAVL   86 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~-~~~~   86 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++.+..   ..++.+.+.     ..|+++-++...     .+ ...+
T Consensus       143 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~-----~aDvV~l~~p~~~~t~~li~~~~l  216 (311)
T 2cuk_A          143 QGLTLGLVG-MGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLK-----EADVVSLHTPLTPETHRLLNRERL  216 (311)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHH-----HCSEEEECCCCCTTTTTCBCHHHH
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHh-----hCCEEEEeCCCChHHHhhcCHHHH
Confidence            567899999 99999999999999999999988876541   112322232     268888876532     12 2455


Q ss_pred             HhhccCCEEEEEecc
Q 041355           87 LNMRLRGRIAVSSII  101 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~  101 (180)
                      ..++++..+++++..
T Consensus       217 ~~mk~ga~lin~srg  231 (311)
T 2cuk_A          217 FAMKRGAILLNTARG  231 (311)
T ss_dssp             TTSCTTCEEEECSCG
T ss_pred             hhCCCCcEEEECCCC
Confidence            678888888888653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.32  E-value=0.034  Score=37.70  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcC----CCccEEEe--
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFP----QGIDIYFE--   75 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~----~~~d~~~d--   75 (180)
                      +++|++||=.| +| .|..+..+++. +.+|++++.++..            .+......+.+..+    +.||+|+.  
T Consensus        23 ~~~g~~VLDlG-~G-~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~   99 (191)
T 3dou_A           23 VRKGDAVIEIG-SS-PGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA   99 (191)
T ss_dssp             SCTTCEEEEES-CT-TCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred             CCCCCEEEEEe-ec-CCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence            68899998777 33 34444455555 7799999998753            22333344444332    48999985  


Q ss_pred             ---CCChh-------------hHHHHHHhhccCCEEEEEec
Q 041355           76 ---NVGGK-------------MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        76 ---~~g~~-------------~~~~~~~~l~~~G~~v~~~~  100 (180)
                         +.|..             .+..+.++|+|+|+++....
T Consensus       100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence               23321             24455678999999987544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.31  E-value=0.016  Score=41.70  Aligned_cols=63  Identities=13%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh----------HcC-CCccEEEeCCChh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR----------WFP-QGIDIYFENVGGK   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~----------~~~-~~~d~~~d~~g~~   80 (180)
                      ++.+++|.|+ |++|.++++.+...|++|+++.++.++ .+.+.+.+..          ... +++|+++.|++..
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~  191 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSR-AEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG  191 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHH-HHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHH-HHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCC
Confidence            6789999995 899999999999999999888776432 1122222111          011 4789999999854

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.31  E-value=0.052  Score=38.46  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=51.6

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~   97 (180)
                      +|+|.|++|.+|...++.+... +.+++++.+...    ++.+.+.    .++|+++|++.-+.....+..+...|.-+.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----dl~~~~~----~~~DvvIDfT~p~a~~~~~~~a~~~g~~~V   73 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----PLSLLTD----GNTEVVIDFTHPDVVMGNLEFLIDNGIHAV   73 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----CTHHHHH----TTCCEEEECSCTTTHHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----CHHHHhc----cCCcEEEEccChHHHHHHHHHHHHcCCCEE
Confidence            5899998899999999988765 888887776432    2222221    257999999976655555555555666556


Q ss_pred             Eecc
Q 041355           98 SSII  101 (180)
Q Consensus        98 ~~~~  101 (180)
                      ++..
T Consensus        74 igTT   77 (245)
T 1p9l_A           74 VGTT   77 (245)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            6554

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.30  E-value=0.0034  Score=46.23  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHH-----------HHHHhH--cCC
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLD-----------AALKRW--FPQ   68 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~-----------~~~~~~--~~~   68 (180)
                      .+.+...+++|++||-.| +|+ |..+..+++..+  .+|++++.+++.   ......           ....+.  ..+
T Consensus        66 ~l~~~l~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcCCCCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            344566789999999999 665 888888888754  479999987653   000000           000110  123


Q ss_pred             CccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           69 GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        69 ~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .||+|+....-+ ....+.+.|+|+|+++....
T Consensus       144 ~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBC
T ss_pred             CeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            689988766544 34667789999999987643

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.30  E-value=0.017  Score=42.85  Aligned_cols=79  Identities=20%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC------cchHHHHHHhHcCCCccEEEeCCChh-----hH-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE------EPDLDAALKRWFPQGIDIYFENVGGK-----ML-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~-~   83 (180)
                      .|.+|.|.| .|.+|...++.++.+|++|++.+++....      ..++.+.+.     ..|+++.++...     .+ .
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~-----~aDvV~~~~p~t~~t~~li~~  218 (331)
T 1xdw_A          145 RNCTVGVVG-LGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLE-----KSDIITIHAPYIKENGAVVTR  218 (331)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHH-----HCSEEEECCCCCTTTCCSBCH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHh-----hCCEEEEecCCchHHHHHhCH
Confidence            467899999 99999999999999999999988876531      012222222     368998876531     12 4


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      ..+..+++++.+++++.
T Consensus       219 ~~l~~mk~ga~lin~sr  235 (331)
T 1xdw_A          219 DFLKKMKDGAILVNCAR  235 (331)
T ss_dssp             HHHHTSCTTEEEEECSC
T ss_pred             HHHhhCCCCcEEEECCC
Confidence            56788899998888874

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.30  E-value=0.0063  Score=44.83  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4678999999999999999888888999998888654

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.29  E-value=0.059  Score=39.91  Aligned_cols=80  Identities=11%  Similarity=0.060  Sum_probs=51.2

Q ss_pred             CEEEEecCCchHHHHHHHHHH-H-cCCEEEEEeCCCCC---------CcchHHHHHHhHcCC-CccEEEeCCChh-hHHH
Q 041355           18 EYVYVSAASGAVGQLVGQFAK-L-AGCYVVGSAGSKEK---------EEPDLDAALKRWFPQ-GIDIYFENVGGK-MLDA   84 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak-~-~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~-~~d~~~d~~g~~-~~~~   84 (180)
                      -+|.|.| +|.+|...++.++ . -+++++++++.+..         ..+.....+.+.... ++|+++.|+... ....
T Consensus         9 ~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   87 (346)
T 3cea_A            9 LRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEM   87 (346)
T ss_dssp             EEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHH
T ss_pred             ceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHH
Confidence            3689999 7999998877776 4 46788877665432         000011122333333 799999999876 6677


Q ss_pred             HHHhhccCCEEEEEe
Q 041355           85 VLLNMRLRGRIAVSS   99 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~   99 (180)
                      +..+++.+ +-+.+.
T Consensus        88 ~~~al~~G-~~v~~e  101 (346)
T 3cea_A           88 TIYAMNAG-LNVFCE  101 (346)
T ss_dssp             HHHHHHTT-CEEEEC
T ss_pred             HHHHHHCC-CEEEEc
Confidence            77777764 544553

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.28  E-value=0.015  Score=43.73  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHHHhHcCCCccEEEeCCChh--h---H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAALKRWFPQGIDIYFENVGGK--M---L   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~d~~g~~--~---~   82 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...        ...++.+.+.     ..|+++-++...  +   +
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~-----~aDvV~l~~Plt~~T~~li  248 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLT-----KSDFIFVVAAVTSENKRFL  248 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHH-----SCSEEEECSCSSCC---CC
T ss_pred             CCCEEEEec-CCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHh-----cCCEEEEcCcCCHHHHhhc
Confidence            378999999 9999999999999999999998876422        0112222222     468888776522  1   1


Q ss_pred             -HHHHHhhccCCEEEEEec
Q 041355           83 -DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~  100 (180)
                       ...+..+++++.+++++.
T Consensus       249 ~~~~l~~mk~gailIN~aR  267 (365)
T 4hy3_A          249 GAEAFSSMRRGAAFILLSR  267 (365)
T ss_dssp             CHHHHHTSCTTCEEEECSC
T ss_pred             CHHHHhcCCCCcEEEECcC
Confidence             456678899999998873

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.28  E-value=0.017  Score=41.05  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~   51 (180)
                      +.+|+|.| +|++|..+++.+...|. ++..+++..
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46899999 89999999999999998 777777764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.28  E-value=0.024  Score=35.84  Aligned_cols=63  Identities=19%  Similarity=0.207  Sum_probs=41.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C----------cchHHHHHHhHcCCCccEEEeCCChh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E----------EPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~----------~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      +.+|+|+| +|.+|...++.+...|.+|+++++++++    .          +..-.+.+.+..-.++|+++-|++.+
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            35799998 6999999999888889999988886543    0          00001122221123689999988765

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.018  Score=42.31  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=29.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~   51 (180)
                      +-+|||+||+|.+|..+++.+...|  .+|+++++..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~   39 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLG   39 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            3479999999999999888777665  7999988753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.26  E-value=0.027  Score=40.83  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=31.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      -.+.+++|.| +|++|.+++..+...|+ +|+++.|+.+
T Consensus       125 l~~k~vlVlG-aGG~g~aia~~L~~~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            4688999999 58999999988888999 7888877654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.25  E-value=0.02  Score=41.48  Aligned_cols=38  Identities=26%  Similarity=0.247  Sum_probs=33.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -+|.+++|+||+|++|.+++..+...|++|+++.++.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            36789999999999999999999999999888888644

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.25  E-value=0.015  Score=42.82  Aligned_cols=80  Identities=14%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc----chHHHHHHhHcCCCccEEEeCCC-hh----hH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE----PDLDAALKRWFPQGIDIYFENVG-GK----ML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~----~~~~~~~~~~~~~~~d~~~d~~g-~~----~~   82 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++...    ..    .++.+.+.     ..|+++-++. .+    .+
T Consensus       138 ~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~-----~aDiV~l~~Plt~~t~~li  211 (315)
T 3pp8_A          138 EEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLN-----QTRVLINLLPNTAQTVGII  211 (315)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHH-----TCSEEEECCCCCGGGTTCB
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHh-----hCCEEEEecCCchhhhhhc
Confidence            478999999 9999999999999999999999887664    11    12222222     3688888765 22    12


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..++++..+++++..
T Consensus       212 ~~~~l~~mk~gailIN~aRG  231 (315)
T 3pp8_A          212 NSELLDQLPDGAYVLNLARG  231 (315)
T ss_dssp             SHHHHTTSCTTEEEEECSCG
T ss_pred             cHHHHhhCCCCCEEEECCCC
Confidence             4556778888888887643

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.25  E-value=0.017  Score=42.81  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~   51 (180)
                      +|||+||+|.+|..+++.+... |.+|+++++..
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~   35 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT   35 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCC
Confidence            5899999999999988777666 78999988754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.24  E-value=0.0078  Score=43.95  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      |.+|||+||+|.+|...++.+...|++|+++.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            568999999999999999988888999998887

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.23  E-value=0.015  Score=40.91  Aligned_cols=85  Identities=13%  Similarity=0.044  Sum_probs=55.9

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc----
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF----   66 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~----   66 (180)
                      ....++.+||-.|+  +.|..++.+++.+  +.+|++++.+++.                   ...+..+.+....    
T Consensus        66 ~~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           66 LKLVNAKKTIEVGV--FTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHHTTCCEEEEECC--TTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTT
T ss_pred             HHhhCCCEEEEeCC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccC
Confidence            34456789999883  3577888888886  5699999987653                   0112222222221    


Q ss_pred             -CCCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           67 -PQGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 -~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                       .+.||++|-.....    .+..+.+.|+|+|.++.-
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence             34799987544322    567788899999988764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.21  E-value=0.0091  Score=43.89  Aligned_cols=38  Identities=32%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..++.+|||+||+|.+|..+++.+...|.+|++++++.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34678999999999999999988888899999998864

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.21  E-value=0.011  Score=43.60  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|+++.++.+
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~   44 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD   44 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            3688999999999999999988889999998887644

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.21  E-value=0.016  Score=42.86  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHHHhHcCCCccEEEeCCCh-h-h---H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAALKRWFPQGIDIYFENVGG-K-M---L   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~d~~g~-~-~---~   82 (180)
                      .|.+|.|.| .|.+|....+.++.+|.+|++.+++...        ...++.+.+.     ..|+++-++.. + +   +
T Consensus       139 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~-----~aDvV~l~lPlt~~T~~li  212 (324)
T 3hg7_A          139 KGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLA-----QADVIVSVLPATRETHHLF  212 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHH-----TCSEEEECCCCCSSSTTSB
T ss_pred             ccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHh-----hCCEEEEeCCCCHHHHHHh
Confidence            478999999 9999999999999999999999887643        1123333332     35777776652 1 1   1


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..++++..+++++..
T Consensus       213 ~~~~l~~mk~gailIN~aRG  232 (324)
T 3hg7_A          213 TASRFEHCKPGAILFNVGRG  232 (324)
T ss_dssp             CTTTTTCSCTTCEEEECSCG
T ss_pred             HHHHHhcCCCCcEEEECCCc
Confidence             2334556777777777643

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.20  E-value=0.008  Score=41.16  Aligned_cols=61  Identities=18%  Similarity=0.087  Sum_probs=44.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC-------CcchHHH--HHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK-------EEPDLDA--ALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~-------~~~~~~~--~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+.+|+|+||+|.+|...++.+...|.  +|+++++++..       ...|+.+  .+.+..   +|+++.|.|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~---~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS---IDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC---CSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh---hcEEEECeee
Confidence            357899999999999999999988898  99999987653       1122221  122222   8999999873

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.17  E-value=0.016  Score=42.98  Aligned_cols=80  Identities=10%  Similarity=0.009  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccEEEeCCCh-h----h
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDIYFENVGG-K----M   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~d~~g~-~----~   81 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...         ...++.+.+.     ..|+++-++.. +    .
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~-----~aDvV~l~~P~t~~t~~l  217 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFA-----SSDFILLALPLNADTLHL  217 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHH-----HCSEEEECCCCSTTTTTC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHh-----hCCEEEEcCCCCHHHHHH
Confidence            478999999 9999999999999999999999887632         0112222222     26888887752 1    1


Q ss_pred             H-HHHHHhhccCCEEEEEecc
Q 041355           82 L-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      + ...+..++++..+++++..
T Consensus       218 i~~~~l~~mk~gailIN~arg  238 (330)
T 4e5n_A          218 VNAELLALVRPGALLVNPCRG  238 (330)
T ss_dssp             BCHHHHTTSCTTEEEEECSCG
T ss_pred             hCHHHHhhCCCCcEEEECCCC
Confidence            2 3566778888888888653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.16  E-value=0.019  Score=41.59  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=31.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+|+|+||+|.+|...++.+...|.+|++++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            45799999999999999998888899999988874

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.15  E-value=0.023  Score=42.48  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---------c-chHHHHHHhHcCCCccEEEeCCCh-h----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---------E-PDLDAALKRWFPQGIDIYFENVGG-K----   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---------~-~~~~~~~~~~~~~~~d~~~d~~g~-~----   80 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++....         . .++.+.+.     ..|+++-++.. +    
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-----~aDvV~l~~Plt~~t~~  236 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLP-----KCDVIVINMPLTEKTRG  236 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGG-----GCSEEEECSCCCTTTTT
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHh-----cCCEEEECCCCCHHHHH
Confidence            578999999 99999999999999999999988775320         0 11211111     47898887763 1    


Q ss_pred             h-HHHHHHhhccCCEEEEEecc
Q 041355           81 M-LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        81 ~-~~~~~~~l~~~G~~v~~~~~  101 (180)
                      . -...+..++++..+++++..
T Consensus       237 li~~~~l~~mk~gailIN~aRG  258 (351)
T 3jtm_A          237 MFNKELIGKLKKGVLIVNNARG  258 (351)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCG
T ss_pred             hhcHHHHhcCCCCCEEEECcCc
Confidence            1 24566788888888888653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.14  E-value=0.058  Score=34.95  Aligned_cols=81  Identities=9%  Similarity=-0.041  Sum_probs=51.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC-CC----------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK-EK----------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~-~~----------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .++++|.| .|.+|...++.+...|.+|+++++++ ++                .+..-.+.+.+..-.++|+++-|++.
T Consensus         3 ~~~vlI~G-~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            3 KDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            46789999 79999999999998999999998864 21                01111123333322368999999886


Q ss_pred             hhHHH----HHHhhccCCEEEEE
Q 041355           80 KMLDA----VLLNMRLRGRIAVS   98 (180)
Q Consensus        80 ~~~~~----~~~~l~~~G~~v~~   98 (180)
                      +..+.    ..+.+.+..+++..
T Consensus        82 d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           82 DADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEE
Confidence            53322    22334455566654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.11  E-value=0.021  Score=42.11  Aligned_cols=80  Identities=11%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeC-CCCCC--------cc-hHHHHHHhHcCCCccEEEeCCChh-----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG-SKEKE--------EP-DLDAALKRWFPQGIDIYFENVGGK-----   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~-~~~~~--------~~-~~~~~~~~~~~~~~d~~~d~~g~~-----   80 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.++ +.+..        .. ++.+.+.     ..|+++-|+...     
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-----~aDvVil~~p~~~~t~~  218 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLS-----VSQFFSLNAPSTPETRY  218 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHH-----HCSEEEECCCCCTTTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHh-----hCCEEEEeccCchHHHh
Confidence            578999999 999999999999999999999988 65420        00 1222221     368998887632     


Q ss_pred             hH-HHHHHhhccCCEEEEEecc
Q 041355           81 ML-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        81 ~~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      .+ ...+..+++++.+++++..
T Consensus       219 ~i~~~~l~~mk~gailIn~arg  240 (320)
T 1gdh_A          219 FFNKATIKSLPQGAIVVNTARG  240 (320)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCG
T ss_pred             hcCHHHHhhCCCCcEEEECCCC
Confidence            12 3456778888888888653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.11  E-value=0.02  Score=43.05  Aligned_cols=80  Identities=10%  Similarity=0.048  Sum_probs=57.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEeCCCCCC---------c-chHHHHHHhHcCCCccEEEeCCChh----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCY-VVGSAGSKEKE---------E-PDLDAALKRWFPQGIDIYFENVGGK----   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~~~~~~---------~-~~~~~~~~~~~~~~~d~~~d~~g~~----   80 (180)
                      .|.+|.|.| .|.+|...++.++.+|++ |++.+++....         . .++.+.+.     ..|+++.++...    
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-----~aDvV~l~~P~t~~t~  236 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA-----QADIVTVNAPLHAGTK  236 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHH-----TCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHh-----cCCEEEECCCCChHHH
Confidence            678999999 999999999999999996 99988765430         0 12222222     468998887642    


Q ss_pred             -hH-HHHHHhhccCCEEEEEecc
Q 041355           81 -ML-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        81 -~~-~~~~~~l~~~G~~v~~~~~  101 (180)
                       .+ ...+..+++++.+++++..
T Consensus       237 ~li~~~~l~~mk~ga~lIn~arG  259 (364)
T 2j6i_A          237 GLINKELLSKFKKGAWLVNTARG  259 (364)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSCG
T ss_pred             HHhCHHHHhhCCCCCEEEECCCC
Confidence             22 3456778888888887754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.10  E-value=0.018  Score=44.25  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK   53 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~   53 (180)
                      .....+++|++||=.| +|+ |..+.++++..+ .+|++++.++..
T Consensus       239 ~~~l~~~~g~~VLDlg-aG~-G~~t~~la~~~~~~~v~a~D~~~~~  282 (429)
T 1sqg_A          239 MTWLAPQNGEHILDLC-AAP-GGKTTHILEVAPEAQVVAVDIDEQR  282 (429)
T ss_dssp             HHHHCCCTTCEEEEES-CTT-CHHHHHHHHHCTTCEEEEEESSTTT
T ss_pred             HHHcCCCCcCeEEEEC-CCc-hHHHHHHHHHcCCCEEEEECCCHHH
Confidence            3455678999999887 444 777778888775 699999998876

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.09  E-value=0.0094  Score=43.39  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=32.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +.+|||+||+|.+|..+++.+...|.+|+++++++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999999999999999999888999999998765

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.09  E-value=0.045  Score=40.55  Aligned_cols=80  Identities=13%  Similarity=0.015  Sum_probs=56.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---------cchHHHHHHhHcCCCccEEEeCCChh-----h
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---------EPDLDAALKRWFPQGIDIYFENVGGK-----M   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~d~~g~~-----~   81 (180)
                      .|.+|.|.| .|.+|...++.++..|.+|++.+++.++.         ..++.+.+.     ..|+++.++...     .
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~-----~aDvVi~~vp~~~~t~~~  227 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAA-----QSDFIVVACSLTPATEGL  227 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHH-----HCSEEEECCCCCTTTTTC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHh-----hCCEEEEeCCCChHHHHh
Confidence            467899999 89999999999999999999998775430         012222222     368999888632     2


Q ss_pred             H-HHHHHhhccCCEEEEEecc
Q 041355           82 L-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      + ...+..++++..++.++..
T Consensus       228 i~~~~~~~mk~gailIn~srg  248 (330)
T 2gcg_A          228 CNKDFFQKMKETAVFINISRG  248 (330)
T ss_dssp             BSHHHHHHSCTTCEEEECSCG
T ss_pred             hCHHHHhcCCCCcEEEECCCC
Confidence            2 3556778888888777553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.09  E-value=0.021  Score=40.31  Aligned_cols=85  Identities=12%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhHc----
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRWF----   66 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~----   66 (180)
                      ....++.+||-.|+ | .|..++.+++.+  +.+|++++.+++.                   ...+..+.+....    
T Consensus        56 ~~~~~~~~VLDiG~-G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~  133 (242)
T 3r3h_A           56 IRLTRAKKVLELGT-F-TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGG  133 (242)
T ss_dssp             HHHHTCSEEEEEES-C-CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHC
T ss_pred             HhhcCcCEEEEeeC-C-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccC
Confidence            34456789998883 3 477777888876  5699999998875                   0112222222221    


Q ss_pred             CCCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           67 PQGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        67 ~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                      .+.||+||-.....    .+..+.+.|+|+|.++.-
T Consensus       134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          134 EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             SSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence            35799886433322    467788999999999874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.08  E-value=0.058  Score=38.90  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-HHH----------------HhH-c-CCCccEE
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-AAL----------------KRW-F-PQGIDIY   73 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-~~~----------------~~~-~-~~~~d~~   73 (180)
                      .+.++.+||-.| +| .|..+..+++..|++|++++.++..  -+.. +..                .+. . ++.||+|
T Consensus        79 ~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~--~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLG-AG-YGGAARFLVRKFGVSIDCLNIAPVQ--NKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCCEEEEeC-CC-CCHHHHHHHHHhCCEEEEEeCCHHH--HHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence            778999999998 54 6888888998888999999987543  0000 000                000 1 2368998


Q ss_pred             EeCCCh-------hhHHHHHHhhccCCEEEEEec
Q 041355           74 FENVGG-------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        74 ~d~~g~-------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +....-       ..+..+.++|+|+|+++....
T Consensus       155 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          155 WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            764331       257778889999999987754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=96.06  E-value=0.022  Score=47.22  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=31.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHH-HcCC-EEEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAK-LAGC-YVVGSAGSK   51 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak-~~g~-~vi~~~~~~   51 (180)
                      +.++.+++|+||+|++|...++.+- ..|+ +|+.+.++.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~  566 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRG  566 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSG
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCc
Confidence            4678999999999999999887775 7899 588888873

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=96.06  E-value=0.034  Score=40.85  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=41.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc---C---CEEEEEeCCCCC-C----------------cchH--HHHHHhHcCCCccEE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA---G---CYVVGSAGSKEK-E----------------EPDL--DAALKRWFPQGIDIY   73 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~---g---~~vi~~~~~~~~-~----------------~~~~--~~~~~~~~~~~~d~~   73 (180)
                      +|||+||+|.+|..+++.+...   |   .+|+++++.... .                ..|+  .+.+.+.. +++|++
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~V   80 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLAREL-RGVDAI   80 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHT-TTCCEE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHh-cCCCEE
Confidence            5899999999999988877765   7   899999875421 0                0011  12333333 479999


Q ss_pred             EeCCC
Q 041355           74 FENVG   78 (180)
Q Consensus        74 ~d~~g   78 (180)
                      |.|.+
T Consensus        81 ih~A~   85 (337)
T 1r6d_A           81 VHFAA   85 (337)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99987

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.05  E-value=0.023  Score=53.39  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=34.0

Q ss_pred             CCCCEEEEecCCch-HHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGA-VGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~-vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      =.|++++|+||+++ ||.+.++.+...|++|++++++.+
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~ 2172 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLD 2172 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46899999999999 999999999999999999988654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.03  E-value=0.036  Score=41.34  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C---c-chHHHHHHhHcCCCccEEEeCCCh-h-h---H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E---E-PDLDAALKRWFPQGIDIYFENVGG-K-M---L   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~---~-~~~~~~~~~~~~~~~d~~~d~~g~-~-~---~   82 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...    .   . .++.+.+.     ..|+++-++.. + +   +
T Consensus       172 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~-----~sDvV~l~~Plt~~T~~li  245 (345)
T 4g2n_A          172 TGRRLGIFG-MGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLG-----ASDIFLIAAPGRPELKGFL  245 (345)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHH-----TCSEEEECSCCCGGGTTCB
T ss_pred             CCCEEEEEE-eChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHh-----hCCEEEEecCCCHHHHHHh
Confidence            367999999 9999999999999999999999887543    0   0 12222222     36888887762 2 1   2


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..++++..+++++..
T Consensus       246 ~~~~l~~mk~gailIN~aRG  265 (345)
T 4g2n_A          246 DHDRIAKIPEGAVVINISRG  265 (345)
T ss_dssp             CHHHHHHSCTTEEEEECSCG
T ss_pred             CHHHHhhCCCCcEEEECCCC
Confidence             4567788999888888653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.02  E-value=0.006  Score=44.95  Aligned_cols=79  Identities=13%  Similarity=0.045  Sum_probs=56.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Cc---------chHHHHHHhHcCCCccEEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EE---------PDLDAALKRWFPQGIDIYF   74 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~---------~~~~~~~~~~~~~~~d~~~   74 (180)
                      .|.+++|.|++..+|..+.+++...|++|.++.++..+            ..         .++.+.+++     +|+++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~-----ADIVI  250 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD-----SDVVI  250 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH-----CSEEE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhcc-----CCEEE
Confidence            68899999966678999999999999998877665221            11         344445554     79999


Q ss_pred             eCCChhh--HHHHHHhhccCCEEEEEecc
Q 041355           75 ENVGGKM--LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        75 d~~g~~~--~~~~~~~l~~~G~~v~~~~~  101 (180)
                      -++|.+.  +..  ..++++..++.++..
T Consensus       251 sAtg~p~~vI~~--e~vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPSENYKFPT--EYIKEGAVCINFACT  277 (320)
T ss_dssp             ECCCCTTCCBCT--TTSCTTEEEEECSSS
T ss_pred             ECCCCCcceeCH--HHcCCCeEEEEcCCC
Confidence            9999763  222  336787777888664

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.01  E-value=0.18  Score=36.25  Aligned_cols=78  Identities=14%  Similarity=0.062  Sum_probs=49.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC-C-----------------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE-K-----------------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      +|.|+|++|-+|...++.+... +.+++++...+. .                 ...++.+.+.     ++|+++|++.-
T Consensus         9 kV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~-----~~DVVIDfT~p   83 (272)
T 4f3y_A            9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA-----EADYLIDFTLP   83 (272)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH-----HCSEEEECSCH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhc-----CCCEEEEcCCH
Confidence            6899999999999999877654 668887655432 1                 0122333232     37999999876


Q ss_pred             hhHHHHHHhhccCCEEEEEecc
Q 041355           80 KMLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        80 ~~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +.....+..+...|.-+.+++.
T Consensus        84 ~a~~~~~~~al~~G~~vVigTT  105 (272)
T 4f3y_A           84 EGTLVHLDAALRHDVKLVIGTT  105 (272)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCEEEECC
Confidence            6444444444444544555553

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.01  E-value=0.021  Score=42.65  Aligned_cols=78  Identities=23%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChh--------------hHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGK--------------MLD   83 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~--------------~~~   83 (180)
                      +|||+||+|.+|..+++.+...|. +|++.+++.  +.+++.+.+.     ++|++|.+++..              ...
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~--d~~~l~~~~~-----~~d~Vih~a~~~~~~~~~~~~~~n~~~~~   74 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT--KEEELESALL-----KADFIVHLAGVNRPEHDKEFSLGNVSYLD   74 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTC--CHHHHHHHHH-----HCSEEEECCCSBCTTCSTTCSSSCCBHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCC--CHHHHHHHhc-----cCCEEEECCcCCCCCCHHHHHHHHHHHHH
Confidence            699999999999999988888898 999988831  2333433333     489999988631              134


Q ss_pred             HHHHhhccCC---EEEEEecccc
Q 041355           84 AVLLNMRLRG---RIAVSSIISQ  103 (180)
Q Consensus        84 ~~~~~l~~~G---~~v~~~~~~~  103 (180)
                      .+++.++..|   +++.+++...
T Consensus        75 ~l~~a~~~~~~~~~~v~~Ss~~~   97 (369)
T 3st7_A           75 HVLDILTRNTKKPAILLSSSIQA   97 (369)
T ss_dssp             HHHHHHTTCSSCCEEEEEEEGGG
T ss_pred             HHHHHHHHhCCCCeEEEeCchhh
Confidence            4566666554   7888876543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.98  E-value=0.014  Score=43.73  Aligned_cols=80  Identities=21%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc-chHHHHHHhHcCCCccEEEeCCCh-h-h---
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE-PDLDAALKRWFPQGIDIYFENVGG-K-M---   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~-~~~~~~~~~~~~~~~d~~~d~~g~-~-~---   81 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++...        .. .++.+.+.     ..|+++-++.. + +   
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~-----~aDiV~l~~Plt~~t~~l  232 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFE-----QSDVLSVHLRLNDETRSI  232 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHH-----HCSEEEECCCCSTTTTTC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHh-----hCCEEEEeccCcHHHHHh
Confidence            478999999 9999999999999999999998876421        00 12222222     36888887752 2 1   


Q ss_pred             -HHHHHHhhccCCEEEEEecc
Q 041355           82 -LDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 -~~~~~~~l~~~G~~v~~~~~  101 (180)
                       -...+..++++..+++++..
T Consensus       233 i~~~~l~~mk~gailIN~aRg  253 (352)
T 3gg9_A          233 ITVADLTRMKPTALFVNTSRA  253 (352)
T ss_dssp             BCHHHHTTSCTTCEEEECSCG
T ss_pred             hCHHHHhhCCCCcEEEECCCc
Confidence             23566788999999998743

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.98  E-value=0.036  Score=41.38  Aligned_cols=80  Identities=23%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCc---------chHHHHHHhHcCCCccEEEeCCChh-----h
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE---------PDLDAALKRWFPQGIDIYFENVGGK-----M   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~---------~~~~~~~~~~~~~~~d~~~d~~g~~-----~   81 (180)
                      .|.+|.|.| .|.+|...++.++.+|.+|++.+++.....         .++.+.+.     ..|+++-++...     .
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~-----~aDvV~l~~P~t~~t~~l  240 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLF-----HSDCVTLHCGLNEHNHHL  240 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHH-----HCSEEEECCCCCTTCTTS
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHh-----cCCEEEEcCCCCHHHHHH
Confidence            578999999 999999999999999999999887654310         02222222     368888877531     1


Q ss_pred             H-HHHHHhhccCCEEEEEecc
Q 041355           82 L-DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        82 ~-~~~~~~l~~~G~~v~~~~~  101 (180)
                      + ...+..++++..+++++..
T Consensus       241 i~~~~l~~mk~gailIN~arg  261 (347)
T 1mx3_A          241 INDFTVKQMRQGAFLVNTARG  261 (347)
T ss_dssp             BSHHHHTTSCTTEEEEECSCT
T ss_pred             hHHHHHhcCCCCCEEEECCCC
Confidence            2 4556778888888887654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.96  E-value=0.05  Score=40.35  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC--------cchHHHHHHhHcCCCccEEEeCCChh-----hH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------EPDLDAALKRWFPQGIDIYFENVGGK-----ML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~   82 (180)
                      .|.+|.|.| .|.+|....+.++..|.+|++.+++.+..        ..++.+.+.     ..|+++.|+...     .+
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~-----~aDvVil~vp~~~~t~~~i  222 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLR-----ESDFVVLAVPLTRETYHLI  222 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHH-----HCSEEEECCCCCTTTTTCB
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHh-----hCCEEEECCCCChHHHHhh
Confidence            567899999 89999999999999999999988876430        001111121     368999888643     12


Q ss_pred             -HHHHHhhccCCEEEEEecc
Q 041355           83 -DAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~~  101 (180)
                       ...+..++++..+++++..
T Consensus       223 ~~~~~~~mk~~ailIn~srg  242 (334)
T 2dbq_A          223 NEERLKLMKKTAILINIARG  242 (334)
T ss_dssp             CHHHHHHSCTTCEEEECSCG
T ss_pred             CHHHHhcCCCCcEEEECCCC
Confidence             3556778888888887643

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=95.95  E-value=0.022  Score=46.12  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~   52 (180)
                      .+.+|+|+||+|.+|..+++.+... |.+|++++++..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~  351 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD  351 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCT
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCch
Confidence            4568999999999999988877776 789999998754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.93  E-value=0.029  Score=40.76  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=31.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ..+|+|+||+|.+|...++.+...|.+|++++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            35799999999999999998888899999998874

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.93  E-value=0.053  Score=39.88  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      .|.+++|.| +|++|.+++..+...|+ +|+++.|+++
T Consensus       147 ~gk~~lVlG-AGGaaraia~~L~~~G~~~v~v~nRt~~  183 (312)
T 3t4e_A          147 RGKTMVLLG-AGGAATAIGAQAAIEGIKEIKLFNRKDD  183 (312)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence            578999999 69999999998889999 8888888743

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.87  E-value=0.047  Score=40.53  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC--------cchHHHHHHhHcCCCccEEEeCCChh-----hH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE--------EPDLDAALKRWFPQGIDIYFENVGGK-----ML   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~   82 (180)
                      .|.+|.|.| .|.+|...++.++..|.+|++.+++.+..        ..++.+.+.     ..|+++.|+...     .+
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~-----~aDiVil~vp~~~~t~~~i  218 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLE-----KSDIVILALPLTRDTYHII  218 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHH-----HCSEEEECCCCCTTTTTSB
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHh-----hCCEEEEcCCCChHHHHHh
Confidence            577999999 99999999999999999999988876430        001111121     368888887643     22


Q ss_pred             -HHHHHhhccCCEEEEEec
Q 041355           83 -DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~  100 (180)
                       ...+..++++ .++.++.
T Consensus       219 ~~~~~~~mk~g-ilin~sr  236 (333)
T 2d0i_A          219 NEERVKKLEGK-YLVNIGR  236 (333)
T ss_dssp             CHHHHHHTBTC-EEEECSC
T ss_pred             CHHHHhhCCCC-EEEECCC
Confidence             2456778888 7777654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.86  E-value=0.041  Score=42.08  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChhh-
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGKM-   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~~-   81 (180)
                      .+..|+|+| .|-+|+.+++.++..|..|++++.++++             .+..-.+.+++.--.++|+++-|++.+. 
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            346799999 8999999999999999999999988664             1111122233321237899999998662 


Q ss_pred             ---HHHHHHhhccCCEEEEEec
Q 041355           82 ---LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 ---~~~~~~~l~~~G~~v~~~~  100 (180)
                         +....+.+.|..+++.-..
T Consensus        82 n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           82 NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHhCCCCeEEEEEC
Confidence               2233345566767766544

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.86  E-value=0.061  Score=39.91  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=57.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC-----cchHHHHHHhHcCCCccEEEeCCChh-----hH-HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE-----EPDLDAALKRWFPQGIDIYFENVGGK-----ML-DA   84 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~d~~g~~-----~~-~~   84 (180)
                      .|.+|.|.| .|.+|...++.++..|.+|++.+++.+..     ..++.+.+.     ..|+++-++...     .+ ..
T Consensus       163 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~-----~aDvVil~vP~~~~t~~li~~~  236 (333)
T 3ba1_A          163 SGKRVGIIG-LGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELAS-----NSDILVVACPLTPETTHIINRE  236 (333)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHH-----TCSEEEECSCCCGGGTTCBCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHh-----cCCEEEEecCCChHHHHHhhHH
Confidence            467899999 89999999999999999999988876541     112322232     368998887632     22 34


Q ss_pred             HHHhhccCCEEEEEecc
Q 041355           85 VLLNMRLRGRIAVSSII  101 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~  101 (180)
                      .+..++++..+++++..
T Consensus       237 ~l~~mk~gailIn~srG  253 (333)
T 3ba1_A          237 VIDALGPKGVLINIGRG  253 (333)
T ss_dssp             HHHHHCTTCEEEECSCG
T ss_pred             HHhcCCCCCEEEECCCC
Confidence            66788888888877654

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=95.85  E-value=0.02  Score=42.21  Aligned_cols=34  Identities=3%  Similarity=0.025  Sum_probs=28.7

Q ss_pred             CCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +++++|+||++  ++|.++++.+...|++|+.++++
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~   37 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWP   37 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECH
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            67899999875  99999888888899999977644

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=95.80  E-value=0.11  Score=34.96  Aligned_cols=37  Identities=11%  Similarity=0.019  Sum_probs=28.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcC---CEEEEEeCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAG---CYVVGSAGSKE   52 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g---~~vi~~~~~~~   52 (180)
                      ++++.+||=.| +| .|..+..+++..+   .+|++++.++.
T Consensus        20 ~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           20 LKKNKIILDIG-CY-PGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             CCTTEEEEEES-CT-TCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCCCEEEEeC-CC-CCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            68899998887 44 4667778887764   69999998875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.76  E-value=0.022  Score=42.08  Aligned_cols=37  Identities=14%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .+.+|||+||+|.+|..+++.+...|.+|+++++...
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT   62 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            4678999999999999999888888999999988643

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.74  E-value=0.063  Score=41.04  Aligned_cols=79  Identities=24%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCCCh-h-h---H-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENVGG-K-M---L-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~g~-~-~---~-~   83 (180)
                      .|.++.|.| .|.+|....+.++.+|.+|++.++++..      ...++.+-+.+     .|+++-++.. + +   + .
T Consensus       155 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~-----aDvV~lhvPlt~~T~~li~~  228 (416)
T 3k5p_A          155 RGKTLGIVG-YGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKT-----SDVVSLHVPSSKSTSKLITE  228 (416)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHH-----CSEEEECCCC-----CCBCH
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhh-----CCEEEEeCCCCHHHhhhcCH
Confidence            478999999 9999999999999999999999886543      11133333332     5677666542 1 1   1 3


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      ..+..++++..+++++.
T Consensus       229 ~~l~~mk~gailIN~aR  245 (416)
T 3k5p_A          229 AKLRKMKKGAFLINNAR  245 (416)
T ss_dssp             HHHHHSCTTEEEEECSC
T ss_pred             HHHhhCCCCcEEEECCC
Confidence            44566677777776654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.74  E-value=0.016  Score=39.72  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=55.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----Cc---ch--H-HHHHHhH-cCCCccEEEeCCCh-
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EE---PD--L-DAALKRW-FPQGIDIYFENVGG-   79 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~---~~--~-~~~~~~~-~~~~~d~~~d~~g~-   79 (180)
                      ..+.++.+||-.| +|. |..+..+++. |.+|++++.++..    ..   ..  + ...+.+. ..+.||+++....- 
T Consensus        42 ~~~~~~~~vLdiG-~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           42 RAGNIRGDVLELA-SGT-GYWTRHLSGL-ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTTTSCSEEEEES-CTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             hcCCCCCeEEEEC-CCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhh
Confidence            3478889999998 443 7788888877 8899999987542    00   00  0 0000111 12379998764321 


Q ss_pred             --------hhHHHHHHhhccCCEEEEEec
Q 041355           80 --------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        80 --------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                              ..+..+.+.|+|+|.++....
T Consensus       119 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          119 HVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                    145667789999999988754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.74  E-value=0.015  Score=40.57  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------Ccc-------hHHHHHH--hHcCCCccE
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------EEP-------DLDAALK--RWFPQGIDI   72 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------~~~-------~~~~~~~--~~~~~~~d~   72 (180)
                      ..++++++||-.| +|+ |..+..+++..| .+|++++.++..         ...       +... ..  ....+.||+
T Consensus        70 ~~~~~~~~VLDlG-cG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~D~  146 (230)
T 1fbn_A           70 MPIKRDSKILYLG-ASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK-PQEYANIVEKVDV  146 (230)
T ss_dssp             CCCCTTCEEEEES-CCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC-GGGGTTTSCCEEE
T ss_pred             cCCCCCCEEEEEc-ccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCC-cccccccCccEEE
Confidence            4567899999998 665 888999999886 599999988642         000       0000 00  001146899


Q ss_pred             EEeCCChh-----hHHHHHHhhccCCEEEEE
Q 041355           73 YFENVGGK-----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        73 ~~d~~g~~-----~~~~~~~~l~~~G~~v~~   98 (180)
                      ++..+...     .+..+.+.|+|+|+++..
T Consensus       147 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          147 IYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            88554432     367777899999999886

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.73  E-value=0.017  Score=40.88  Aligned_cols=89  Identities=16%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-HH---------------HHhH-c-CC
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-AA---------------LKRW-F-PQ   68 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-~~---------------~~~~-~-~~   68 (180)
                      .+.+...+.++.+||-.| +| .|..+..+++.. .+|++++.++..  -+.. +.               +.+. . ++
T Consensus        28 ~l~~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~-~~v~gvD~s~~~--l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           28 KLMQIAALKGNEEVLDVA-TG-GGHVANAFAPFV-KKVVAFDLTEDI--LKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             HHHHHHTCCSCCEEEEET-CT-TCHHHHHHGGGS-SEEEEEESCHHH--HHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHhCCCCCCEEEEEe-CC-CCHHHHHHHHhC-CEEEEEeCCHHH--HHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            344566778999999998 55 677777777764 499999887542  0000 00               0010 1 23


Q ss_pred             CccEEEeCCCh-------hhHHHHHHhhccCCEEEEEec
Q 041355           69 GIDIYFENVGG-------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        69 ~~d~~~d~~g~-------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      .||+|+.+..-       ..+..+.++|+|+|+++....
T Consensus       103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            78999876432       256778889999999988643

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.73  E-value=0.018  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4689999999999999998888889999998764

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.72  E-value=0.071  Score=37.34  Aligned_cols=79  Identities=11%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~   97 (180)
                      +|.|.| .|.+|...++.+...|.++++++.++.+... ....+.+....++|++++|+... ..+.+...++.+- .+.
T Consensus         2 ~vgiIG-~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~-~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~-~vv   78 (236)
T 2dc1_A            2 LVGLIG-YGAIGKFLAEWLERNGFEIAAILDVRGEHEK-MVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGI-DLI   78 (236)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEECSSCCCTT-EESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTC-EEE
T ss_pred             EEEEEC-CCHHHHHHHHHHhcCCCEEEEEEecCcchhh-hcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCC-cEE
Confidence            578999 6999998777776678888666555432110 11112222224689999999977 4555556666544 444


Q ss_pred             Eec
Q 041355           98 SSI  100 (180)
Q Consensus        98 ~~~  100 (180)
                      ...
T Consensus        79 ~~~   81 (236)
T 2dc1_A           79 VLS   81 (236)
T ss_dssp             ESC
T ss_pred             EEC
Confidence            433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.71  E-value=0.035  Score=42.15  Aligned_cols=84  Identities=17%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcc--hH----HHHHHhHcCCCccEEEeCCCh--h---hH-H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP--DL----DAALKRWFPQGIDIYFENVGG--K---ML-D   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~--~~----~~~~~~~~~~~~d~~~d~~g~--~---~~-~   83 (180)
                      .|.+|.|+| .|.+|...++.++.+|.+|++.+++......  ..    ...+.+.. ...|+++-++..  +   .+ .
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell-~~aDvV~l~~Plt~~t~~li~~  267 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMY-PVCDVVTLNCPLHPETEHMIND  267 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHG-GGCSEEEECSCCCTTTTTCBSH
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHH-hcCCEEEEecCCchHHHHHhhH
Confidence            578999999 9999999999999999999998877543000  00    00111111 147888888762  1   22 3


Q ss_pred             HHHHhhccCCEEEEEecc
Q 041355           84 AVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~~  101 (180)
                      ..+..++++..+++++..
T Consensus       268 ~~l~~mk~gailIN~aRG  285 (393)
T 2nac_A          268 ETLKLFKRGAYIVNTARG  285 (393)
T ss_dssp             HHHTTSCTTEEEEECSCG
T ss_pred             HHHhhCCCCCEEEECCCc
Confidence            556778888888887653

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.67  E-value=0.017  Score=42.03  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|||+||+|.+|..+++.+...| .++++++.
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~   33 (313)
T 3ehe_A            3 LIVVTGGAGFIGSHVVDKLSESN-EIVVIDNL   33 (313)
T ss_dssp             CEEEETTTSHHHHHHHHHHTTTS-CEEEECCC
T ss_pred             EEEEECCCchHHHHHHHHHHhCC-CEEEEEcC
Confidence            69999999999999999888888 55555443

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=95.65  E-value=0.043  Score=49.30  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCch-HHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGA-VGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~-vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+++||+||+++ +|.++++.+...|++|++++++
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R  686 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSR  686 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999998 9999988888889999988544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	3e-16
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	6e-16
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	2e-11
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-10
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	1e-08
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	6e-08
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	4e-06
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	2e-05
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	4e-04
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	0.004

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 3e-16
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDL--------------- 58
               + + VS A+GA G L GQ   L GC  V      +++   L               
Sbjct: 28  AGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTG 87

Query: 59  --DAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE----KPEGV 112
                L+   P G+D+YF+NVGG + + V+  M     I +   ISQYN +     P   
Sbjct: 88  NVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPP 147

Query: 113 HNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGK 152
                   + I  E F   +Y   +   +  +    +EGK
Sbjct: 148 AVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGK 187

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 18/159 (11%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--------------- 55
           VC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK                 
Sbjct: 24  VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT 83

Query: 56  -PDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE-KPEGVH 113
              L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+   IS YN   +     
Sbjct: 84  VNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGP 143

Query: 114 NLEQLIGKRIRLEGFLAGDYY-HLYLKFLELVIPAIREG 151
           + E +I K++R+EGF+   +   +  K L  ++  + EG
Sbjct: 144 SPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEG 182

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP--------------DLD 59
             +   V V+ A+G VG +        G  VV S G++E  +                 D
Sbjct: 21  SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYD 80

Query: 60  AALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI 119
             LK    Q      + VGGK L ++L  ++  G +AVS +     +        +   I
Sbjct: 81  GTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPAT-----VYPFI 135

Query: 120 GKRIRLEGF 128
            + + L G 
Sbjct: 136 LRGVSLLGI 144

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 25/172 (14%), Positives = 42/172 (24%), Gaps = 35/172 (20%)

Query: 11  VCSPKKGEYVYV-SAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------- 53
                 G+  ++ +  + AVG+   Q  KL     +     +                  
Sbjct: 23  YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQV 82

Query: 54  ---------EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQY 104
                    E         +       +    VGGK    +   +   G +     +S  
Sbjct: 83  ITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQ 142

Query: 105 NLEKPEGVHNLEQLIGKRIRLEGFLAGDYYH----LYLKFLELVIPAIREGK 152
            +  P         I K     GF   +       L    L  +I    EGK
Sbjct: 143 PVTIPTS-----LYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 189

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE--------------PDLD 59
             +   V V+ A+G VG L        G  V  S G   + +                + 
Sbjct: 29  TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMA 88

Query: 60  AALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLI 119
             ++    Q      + VGG+ L  VL  MR  G +AVS +     +        +   I
Sbjct: 89  ERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPT-----TVHPFI 143

Query: 120 GKRIRLEG 127
            + + L G
Sbjct: 144 LRGVSLLG 151

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 26/164 (15%)

Query: 8   IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP----------- 56
            +     + G    V    G    ++          ++G   +K+K              
Sbjct: 20  AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 79

Query: 57  ------DLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE 110
                  +   L      G+D  FE +G   +    L    +G      +    +    E
Sbjct: 80  PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAAS---GE 136

Query: 111 GVHNLEQLIGKRIRLEGFLAGDYYHL--YLKFLELVIPAIREGK 152
            +      +      +G   G +  +    K +          K
Sbjct: 137 EIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEY----MSKK 176

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 14  PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEP------------DLDAA 61
             +   + V+ ASG VG          G  VV  +G +   E             D  A 
Sbjct: 29  RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAE 88

Query: 62  LKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK 121
            +    Q      + VG K+L  VL  M   G +A   +   +          +   I +
Sbjct: 89  SRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFT-----LPTTVMPFILR 143

Query: 122 RIRLEGF 128
            +RL+G 
Sbjct: 144 NVRLQGV 150

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 17/159 (10%), Positives = 37/159 (23%), Gaps = 23/159 (14%)

Query: 11  VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------- 53
               + G    V          V          ++    + +K                 
Sbjct: 23  TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPND 82

Query: 54  EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVH 113
               +   L +    G+D   E VG   +    L   L+G      +      +      
Sbjct: 83  HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVA---- 138

Query: 114 NLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIREGK 152
                +      +G + G +       +  ++ A  + K
Sbjct: 139 TRPIQLIAGRTWKGSMFGGFK--GKDGVPKMVKAYLDKK 175

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEE 55
              +   + V+ ASG VG          G  VV  +G +   E
Sbjct: 27 GVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE 70

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 64  RWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRI 123
           R    G       V GK ++  L  +   GR+             P       +L+ + +
Sbjct: 85  RAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPL-----RLMRRNL 139

Query: 124 RLEGFLAGDYYH---LYLKFLELVIPAIREG 151
            + GF          L  + L  ++P +   
Sbjct: 140 AVLGFWLTPLLREGALVEEALGFLLPRLGRE 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.94
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.94
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.93
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.91
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.91
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.9
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.9
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.89
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.88
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.88
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.88
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.86
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.85
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.83
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.83
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	98.53
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	98.34
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.26
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.22
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.2
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.2
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.15
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.14
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.13
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.11
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.09
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.08
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	98.07
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.05
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.05
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.02
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.01
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.99
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.98
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.97
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.94
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.94
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.92
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.91
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.9
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.9
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.9
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.89
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.88
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.88
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.88
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.88
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.87
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.87
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.84
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.84
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.83
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.82
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.82
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.81
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.8
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.76
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.71
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.7
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.69
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.68
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.65
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	97.65
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.57
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.56
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.55
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.55
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.54
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.47
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.46
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.42
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.42
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.42
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.42
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.4
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.39
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.36
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.34
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.31
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.31
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.31
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.28
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.25
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	97.21
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.21
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.19
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.17
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.17
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.17
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.13
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.1
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.06
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	97.05
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.05
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	97.01
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.01
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.96
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.93
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.9
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.88
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.88
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.88
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.88
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.87
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.87
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.84
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.82
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.81
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.8
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.8
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.77
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.76
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.72
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	96.71
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.69
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.63
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.62
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.62
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.61
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.58
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.55
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.53
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.52
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.52
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.46
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.46
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.45
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.41
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.38
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.37
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.36
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.34
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	96.32
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.32
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.24
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	96.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.21
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.2
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.19
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.16
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.15
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.13
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.12
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.11
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.1
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.09
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.04
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.99
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.97
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.95
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.94
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.88
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.82
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.8
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.76
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	95.75
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.74
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	95.73
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.73
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.7
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.68
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.59
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.58
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.58
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	95.57
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.54
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.53
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.47
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.43
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.4
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.4
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.35
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.34
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.33
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.3
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.23
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.18
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.17
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.15
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.02
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.01
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.88
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.87
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.87
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.81
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.79
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.79
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.73
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.7
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.63
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.63
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	94.52
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.43
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.42
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.34
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.31
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.3
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.21
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.17
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.98
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.95
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.94
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.87
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.86
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.81
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.74
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.54
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	93.42
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.37
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	93.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	93.25
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.21
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.1
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.09
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	93.09
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.08
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.08
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.04
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.04
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.98
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	92.93
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.89
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.87
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.61
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	92.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	92.31
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.29
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	92.17
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.16
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.16
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.16
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	92.11
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.04
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	92.04
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.95
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.91
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	91.89
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.89
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	91.89
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.86
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.81
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.71
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.7
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.62
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.62
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	91.58
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.48
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.29
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	91.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.16
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.14
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.12
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.09
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.08
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.96
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.94
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	90.93
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.88
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.82
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.55
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.53
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	90.35
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.31
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.11
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.07
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.06
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.99
d1zl0a2	167	LD-carboxypeptidase A, N-terminal domain {Pseudomo	89.77
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.68
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.61
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.57
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.56
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.54
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	89.53
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.5
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	89.43
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.42
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.32
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	89.16
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.16
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	89.07
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	89.02
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	88.96
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	88.93
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.74
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.66
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.61
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.45
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.35
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	88.29
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	88.23
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.05
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.03
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.99
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.98
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	87.95
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	87.81
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	87.75
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.73
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	87.38
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.33
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	87.24
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	87.12
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	87.11
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.85
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.82
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	86.54
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.42
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	86.36
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	86.35
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	86.09
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	85.52
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	85.35
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	85.3
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.11
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	85.11
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	84.94
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.93
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.86
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.82
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.76
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.75
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.19
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	84.18
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	83.86
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	83.86
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.67
d1qb7a_	236	Adenine PRTase {Leishmania donovani [TaxId: 5661]}	83.13
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.89
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	82.46
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	82.26
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	82.23
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.16
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.02
d1g2qa_	178	Adenine PRTase {Baker's yeast (Saccharomyces cerev	81.99
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	81.72
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.62
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	81.58
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.81
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	80.63
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	80.21
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	80.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	80.07

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.1e-28  Score=168.49  Aligned_cols=150  Identities=19%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|+||.+|++|+++++++++               +++++.+++++.+
T Consensus        11 ~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t   90 (183)
T d1pqwa_          11 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT   90 (183)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999999988764               5678999999999


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch----HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY----YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  141 (180)
                      ++ ++|++|||+|++.+..++++++++|+++.+|......     ........+.++.++.++.....    +...++.+
T Consensus        91 ~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (183)
T d1pqwa_          91 DGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA-----DASLGLAALAKSASFSVVDLDLNLKLQPARYRQLL  165 (183)
T ss_dssp             TTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT-----TCEEEGGGGTTTCEEEECCHHHHHHHCHHHHHHHH
T ss_pred             CCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCC-----CcccchHHHhCCcEEEEEEccceeccCHHHHHHHH
Confidence            87 9999999999999999999999999999998765321     11122344567888888876543    34456788


Q ss_pred             HHHHHHHHCCCccce
Q 041355          142 ELVIPAIREGKMVYV  156 (180)
Q Consensus       142 ~~~~~~~~~g~~~~~  156 (180)
                      +++.+++++|+++|+
T Consensus       166 ~~v~~~i~~G~i~p~  180 (183)
T d1pqwa_         166 QHILQHVADGKLEVL  180 (183)
T ss_dssp             HHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHCCCCcee
Confidence            999999999999984

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.96  E-value=3e-28  Score=166.11  Aligned_cols=150  Identities=41%  Similarity=0.552  Sum_probs=126.9

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|++|..|++||++++++++               +++++.+.+.+.+
T Consensus        15 lTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          15 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             HHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHh
Confidence            6999999999999999999999999999999999999999999999998775               4556666766666


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCC-CCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLE-KPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLEL  143 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  143 (180)
                      .+ ++|++|||+|++.+...+++++++|+++.+|....+... ..+...++..++.+++++.|++...+ .+..++.+++
T Consensus        95 ~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~~~~~~~~~~  174 (182)
T d1v3va2          95 SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRD  174 (182)
T ss_dssp             CTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCHHHHHHHHHH
T ss_pred             hcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccChHHHHHHHHH
Confidence            55 999999999999999999999999999999976654322 22345667789999999999987766 4556678899


Q ss_pred             HHHHHHCC
Q 041355          144 VIPAIREG  151 (180)
Q Consensus       144 ~~~~~~~g  151 (180)
                      +.+++++|
T Consensus       175 l~~~i~~G  182 (182)
T d1v3va2         175 LMKWVLEG  182 (182)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCc
Confidence            99999886

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7e-27  Score=158.22  Aligned_cols=143  Identities=24%  Similarity=0.284  Sum_probs=118.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++.+..++++|++|||+||+|++|++++|+||.+|++|+++++++++               +++++.+.+++.+
T Consensus        14 ~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t   93 (174)
T d1yb5a2          14 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV   93 (174)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhh
Confidence            6899999888999999999999999999999999999999999999988765               5678899999998


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLELV  144 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (180)
                      ++ ++|+++||+|++.++.++++++++|+++.+|...       ..+.++..++.+++++.|+..... ++..++..+.+
T Consensus        94 ~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~-------~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~l  166 (174)
T d1yb5a2          94 GEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG-------TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAAL  166 (174)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS-------CEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHH
T ss_pred             ccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCC-------CCCCCHHHHHHCCCEEEEEEecCCCHHHHHHHHHHH
Confidence            87 8999999999889999999999999999998643       234566788899999999986543 33344444445


Q ss_pred             HHHHHCC
Q 041355          145 IPAIREG  151 (180)
Q Consensus       145 ~~~~~~g  151 (180)
                      .+.++.|
T Consensus       167 ~~g~~~G  173 (174)
T d1yb5a2         167 QAGMEIG  173 (174)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcc
Confidence            4455444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.2e-26  Score=158.65  Aligned_cols=151  Identities=30%  Similarity=0.425  Sum_probs=116.9

Q ss_pred             chHHHHHHHHcCCCCC--CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHHHHH
Q 041355            2 LIVGNLIILVCSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g--~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~~~~   62 (180)
                      +|||+++.+..++++|  ++|||+||+|+||++++|+||.+|+ .|+++++++++                .++++.+.+
T Consensus        14 lTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~   93 (187)
T d1vj1a2          14 LTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQL   93 (187)
T ss_dssp             HHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHH
Confidence            6999999999999988  8899999999999999999999999 56666666554                567888999


Q ss_pred             HhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCc----cccchHHHhhcCcEEEeeeccchHHHHH
Q 041355           63 KRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPE----GVHNLEQLIGKRIRLEGFLAGDYYHLYL  138 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (180)
                      ++.++.++|++|||+|++.+...+++++++|+++.+|...++....+.    .......+..+++++.++....+.....
T Consensus        94 ~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g~~~~~~~~~~~  173 (187)
T d1vj1a2          94 REACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFE  173 (187)
T ss_dssp             HHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEECCGGGCGGGHH
T ss_pred             HHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEEeEecchHHHHH
Confidence            999887999999999999999999999999999999976553221111    1112234567888999887766555556


Q ss_pred             HHHHHHHHHHHCCC
Q 041355          139 KFLELVIPAIREGK  152 (180)
Q Consensus       139 ~~~~~~~~~~~~g~  152 (180)
                      +.++++.+|+.+|+
T Consensus       174 e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         174 PGILQLSQWFKEGK  187 (187)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCcC
Confidence            78899999999885

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=4.6e-26  Score=153.60  Aligned_cols=126  Identities=24%  Similarity=0.246  Sum_probs=100.7

Q ss_pred             chHHHHH---HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHh
Q 041355            2 LIVGNLI---ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l---~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~   64 (180)
                      ||||+++   .+..+.++|++|||+||+|+||.+++|+||.+|++|+++++++++              .++.+.+..+.
T Consensus        14 lTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~   93 (176)
T d1xa0a2          14 FTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRP   93 (176)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHH
Confidence            6888665   456788999999999999999999999999999999999999887              23333333333


Q ss_pred             HcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccc
Q 041355           65 WFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGD  132 (180)
Q Consensus        65 ~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (180)
                      ..++++|++||++|++.+...+.+|+++|+++.+|...+     ...+.++..++.+++++.|+....
T Consensus        94 ~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g-----~~~~~~~~~~~~k~~~i~Gv~~~~  156 (176)
T d1xa0a2          94 LDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGG-----AEVPTTVHPFILRGVSLLGIDSVY  156 (176)
T ss_dssp             CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSS-----SCCCCCSHHHHHTTCEEEECCSSS
T ss_pred             hhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccC-----cccCCCHHHHHHCCcEEEEEeCCc
Confidence            334499999999999999999999999999999998764     345677888999999999976433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.93  E-value=3.8e-25  Score=151.42  Aligned_cols=146  Identities=18%  Similarity=0.238  Sum_probs=117.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEe-cCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVS-AASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDL   58 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~-Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~   58 (180)
                      +|||+++.+..++++|++++|+ ||+|++|++++|+||.+|++||+++++++.                      +..++
T Consensus        14 ~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~   93 (189)
T d1gu7a2          14 LTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF   93 (189)
T ss_dssp             HHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHH
Confidence            7999999999999999988885 789999999999999999999999877654                      11223


Q ss_pred             HHHHHhHc---CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch--
Q 041355           59 DAALKRWF---PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY--  133 (180)
Q Consensus        59 ~~~~~~~~---~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  133 (180)
                      .+.+++.+   ++++|++|||+|++.+...+++|+++|+++.+|...+     .+..++...++.+++++.|+++..+  
T Consensus        94 ~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~-----~~~~~~~~~l~~k~~~i~G~~~~~~~~  168 (189)
T d1gu7a2          94 GPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSF-----QPVTIPTSLYIFKNFTSAGFWVTELLK  168 (189)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSS-----CCEEECHHHHHHSCCEEEECCHHHHHT
T ss_pred             HHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccC-----CCccCcHHHHHHCCcEEEEEEehHhhh
Confidence            33444433   4489999999999999999999999999999987553     2345677788889999999887544  


Q ss_pred             --HHHHHHHHHHHHHHHHCCC
Q 041355          134 --YHLYLKFLELVIPAIREGK  152 (180)
Q Consensus       134 --~~~~~~~~~~~~~~~~~g~  152 (180)
                        ++..++.++++.+++++|+
T Consensus       169 ~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         169 NNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTC
T ss_pred             hCHHHHHHHHHHHHHHHHcCC
Confidence              3445677888999998875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.6e-25  Score=149.85  Aligned_cols=146  Identities=24%  Similarity=0.239  Sum_probs=116.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++.+..++++||+|+|+||+|++|++++|+||..|++|+++++++++               +++++.+.+++.+
T Consensus        14 ~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t   93 (179)
T d1qora2          14 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEIT   93 (179)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHh
Confidence            6899999888899999999999999999999999999999999999999876               5678999999999


Q ss_pred             CC-CccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhc-CcEEEeeeccch---HHHHHHHH
Q 041355           67 PQ-GIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGK-RIRLEGFLAGDY---YHLYLKFL  141 (180)
Q Consensus        67 ~~-~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~  141 (180)
                      ++ ++|+++||+|++++..++.+++++|+++.++.....     ....+...+..+ .+.+....+..+   ++...+.+
T Consensus        94 ~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  168 (179)
T d1qora2          94 GGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEAS  168 (179)
T ss_dssp             TTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHH
T ss_pred             CCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCC-----ccccchhhhhccceEEEEeeEEeeecCCHHHHHHHH
Confidence            88 999999999999999999999999999998876542     222333333332 344443333222   44456677


Q ss_pred             HHHHHHHHCCC
Q 041355          142 ELVIPAIREGK  152 (180)
Q Consensus       142 ~~~~~~~~~g~  152 (180)
                      +++.+++++|.
T Consensus       169 ~~l~~lv~~Gv  179 (179)
T d1qora2         169 NELFSLIASGV  179 (179)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHCcC
Confidence            78888888873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.93  E-value=4.7e-25  Score=149.04  Aligned_cols=144  Identities=19%  Similarity=0.209  Sum_probs=120.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +|||+++.+..++++|++|+|+| +|++|++++|++|.+|+ .|+++++++++               +++++.+.+++.
T Consensus        14 ~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~   92 (174)
T d1f8fa2          14 QTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI   92 (174)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHH
Confidence            58999998999999999999999 59999999999999999 55566666654               556789999999


Q ss_pred             cCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHH
Q 041355           66 FPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELV  144 (180)
Q Consensus        66 ~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +++++|++|||+|.+ .++.++++++++|+++.+|....    .....+++..++.+++++.|+...++.  .+++++++
T Consensus        93 t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~----~~~~~~~~~~~~~k~~~i~Gs~~g~~~--~~~~~~~~  166 (174)
T d1f8fa2          93 TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQL----GTTAQFDVNDLLLGGKTILGVVEGSGS--PKKFIPEL  166 (174)
T ss_dssp             TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCST----TCCCCCCHHHHHHTTCEEEECSGGGSC--HHHHHHHH
T ss_pred             cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCC----CcccccCHHHHHHCCCEEEEEEecCCC--hHHHHHHH
Confidence            999999999999976 78899999999999999987542    223467788899999999998865542  24568899


Q ss_pred             HHHHHCCC
Q 041355          145 IPAIREGK  152 (180)
Q Consensus       145 ~~~~~~g~  152 (180)
                      ++++++|+
T Consensus       167 ~~l~~~Gk  174 (174)
T d1f8fa2         167 VRLYQQGK  174 (174)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99999885

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.5e-26  Score=152.04  Aligned_cols=125  Identities=24%  Similarity=0.260  Sum_probs=98.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCC-Cc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQ-GI   70 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~-~~   70 (180)
                      +|||+++ +..++++|++|+|+||+|++|++++|+||.+|++|+++++++++          ..-++.+...+.+.+ ++
T Consensus        14 ~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~   92 (171)
T d1iz0a2          14 LTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGL   92 (171)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSE
T ss_pred             HHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccc
Confidence            6899999 56899999999999999999999999999999999999998775          111223344444444 89


Q ss_pred             cEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch
Q 041355           71 DIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY  133 (180)
Q Consensus        71 d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (180)
                      |++|||+| +.+..++++++++|+++.+|...+     ...+.++..++.+++++.|++...+
T Consensus        93 D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g-----~~~~~~~~~~~~k~~~i~g~~~~~~  149 (171)
T d1iz0a2          93 DLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEG-----EVAPIPPLRLMRRNLAVLGFWLTPL  149 (171)
T ss_dssp             EEEEECSC-TTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             cccccccc-hhHHHHHHHHhcCCcEEEEeCCCC-----CCCCccHHHHHHCCcEEEEEeCcCh
Confidence            99999988 578899999999999999987653     2345667788999999999987654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=5.7e-24  Score=143.21  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=119.1

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~~   65 (180)
                      +|||+++ ++.++++|++|+|+|++|++|++++|+++.+|+ +|+++.+++++               +++++.+.+++.
T Consensus        14 ~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          14 ITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRI   92 (170)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHH
Confidence            5799998 778999999999999999999999999999997 88888887765               556788888888


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+ ++|+++||+|++ .++.++++++++|+++.+|....      ..+++...++.+++++.|+...+     ++.+++
T Consensus        93 ~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~i~i~Gs~~~~-----~~d~~~  161 (170)
T d1jvba2          93 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA------DLHYHAPLITLSEIQFVGSLVGN-----QSDFLG  161 (170)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC------CCCCCHHHHHHHTCEEEECCSCC-----HHHHHH
T ss_pred             hhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccC------ccccCHHHHHhCCcEEEEEecCC-----HHHHHH
Confidence            877 899999999976 78889999999999999986542      34567788899999999998865     455888


Q ss_pred             HHHHHHCCC
Q 041355          144 VIPAIREGK  152 (180)
Q Consensus       144 ~~~~~~~g~  152 (180)
                      +++++++|+
T Consensus       162 ~l~lv~~GK  170 (170)
T d1jvba2         162 IMRLAEAGK  170 (170)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            899999885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1e-24  Score=145.85  Aligned_cols=127  Identities=22%  Similarity=0.235  Sum_probs=100.2

Q ss_pred             chHHH---HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhH
Q 041355            2 LIVGN---LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~---~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~   65 (180)
                      +|||.   ++.+....+++++|||+||+|+||++++|+||.+|++|+++++++++             +.++........
T Consensus         6 lTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~   85 (167)
T d1tt7a2           6 FTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKA   85 (167)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCS
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhc
Confidence            46664   45556667789899999999999999999999999999999999887             111111112222


Q ss_pred             c-CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch
Q 041355           66 F-PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY  133 (180)
Q Consensus        66 ~-~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (180)
                      + ++++|++||++|++.+...+++|+++|+++.+|...+     ...+.++..++.++++++|+.....
T Consensus        86 ~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g-----~~~~~~~~~l~~k~~~i~G~~~~~~  149 (167)
T d1tt7a2          86 LSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGG-----GEVPATVYPFILRGVSLLGIDSVYC  149 (167)
T ss_dssp             SCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSC-----SCEEECSHHHHTSCCEEEECCSSSC
T ss_pred             ccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCC-----CcccCCHHHHHHCCcEEEEEecCCC
Confidence            3 3489999999999999999999999999999998764     3445677889999999999765443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.91  E-value=1.4e-23  Score=141.33  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=111.5

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------Cc---chHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EE---PDLDAA   61 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~---~~~~~~   61 (180)
                      .+||+++ ++.++++|++|+|+| +|++|++++|++|++|++|+++++++++                 ..   .+..+.
T Consensus        13 a~a~~a~-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          13 SVGVHAC-RRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhh
Confidence            5789998 778999999999998 8999999999999999999999998775                 11   233445


Q ss_pred             HHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHH
Q 041355           62 LKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKF  140 (180)
Q Consensus        62 ~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +.+..++++|++|||+|++ .++.++++++++|+++.+|....      ...+++..++.+++++.|+....      +.
T Consensus        91 ~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~------~~~~~~~~~~~k~i~i~gs~~~~------~~  158 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ------MVTVPLVNACAREIDIKSVFRYC------ND  158 (170)
T ss_dssp             HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSS------CCCCCHHHHHTTTCEEEECCSCS------SC
T ss_pred             hhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCC------CCCcCHHHHHHCCCEEEEEECCH------HH
Confidence            5555566999999999987 78999999999999999986542      23567788999999999986533      23


Q ss_pred             HHHHHHHHHCCC
Q 041355          141 LELVIPAIREGK  152 (180)
Q Consensus       141 ~~~~~~~~~~g~  152 (180)
                      ++++++++++|+
T Consensus       159 ~~~ai~li~~Gk  170 (170)
T d1e3ja2         159 YPIALEMVASGR  170 (170)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCC
Confidence            667888888875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.5e-23  Score=142.63  Aligned_cols=140  Identities=18%  Similarity=0.158  Sum_probs=110.7

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccch---HHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPD---LDAAL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~---~~~~~   62 (180)
                      +|||+++.+..++++|++|+|+| +|++|++++|+||++|+ +|+++++++++               .+.+   ..+.+
T Consensus        14 ~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i   92 (182)
T d1vj0a2          14 ATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAI   92 (182)
T ss_dssp             HHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEC-CCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHH
Confidence            58999998888999999999999 59999999999999999 89999998776               2223   34557


Q ss_pred             HhHcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccch-HHHhhcCcEEEeeeccchHHHHHH
Q 041355           63 KRWFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNL-EQLIGKRIRLEGFLAGDYYHLYLK  139 (180)
Q Consensus        63 ~~~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ++.+++ ++|++|||+|++ .+..++++++++|+++.+|.....    ...+.++ ..++.+++++.|++..+     ..
T Consensus        93 ~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~l~~k~l~i~G~~~~~-----~~  163 (182)
T d1vj0a2          93 MDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ----DPVPFKVYEWLVLKNATFKGIWVSD-----TS  163 (182)
T ss_dssp             HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCC----CCEEECHHHHTTTTTCEEEECCCCC-----HH
T ss_pred             HHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCC----CccccccHHHHHHCCcEEEEEEeCC-----HH
Confidence            777877 899999999986 789999999999999999865421    1223343 34678999999998865     23


Q ss_pred             HHHHHHHHHHCC
Q 041355          140 FLELVIPAIREG  151 (180)
Q Consensus       140 ~~~~~~~~~~~g  151 (180)
                      .++++++++++.
T Consensus       164 ~~~~~~~~i~~~  175 (182)
T d1vj0a2         164 HFVKTVSITSRN  175 (182)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHC
Confidence            456666666653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=2.9e-23  Score=139.96  Aligned_cols=138  Identities=19%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             chHHHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------CcchHHHHHHhH
Q 041355            2 LIVGNLIILVC-SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------EEPDLDAALKRW   65 (180)
Q Consensus         2 l~a~~~l~~~~-~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------~~~~~~~~~~~~   65 (180)
                      +|||+++.+.. .+++|++|+|+| +|++|++++|+++.+|+ .|+++++++++              ..++..+...+.
T Consensus        17 ~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~   95 (172)
T d1h2ba2          17 ITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL   95 (172)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHh
Confidence            68999997766 489999999999 69999999999999998 67777777665              334556667777


Q ss_pred             cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHH
Q 041355           66 FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLEL  143 (180)
Q Consensus        66 ~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+ ++|++|||+|+. .++..+.+++++|+++.+|...       ..++++..++.+++++.|+....     +..+++
T Consensus        96 ~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-------~~~~~~~~l~~k~~~i~Gs~~~~-----~~d~~~  163 (172)
T d1h2ba2          96 TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-------ELRFPTIRVISSEVSFEGSLVGN-----YVELHE  163 (172)
T ss_dssp             TTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-------CCCCCHHHHHHTTCEEEECCSCC-----HHHHHH
T ss_pred             hCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-------cccCCHHHHHhCCcEEEEEEecC-----HHHHHH
Confidence            776 999999999987 7899999999999999998632       23567788999999999998876     344778


Q ss_pred             HHHHHHCCC
Q 041355          144 VIPAIREGK  152 (180)
Q Consensus       144 ~~~~~~~g~  152 (180)
                      +++++.+|+
T Consensus       164 ~l~l~~~GK  172 (172)
T d1h2ba2         164 LVTLALQGK  172 (172)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            889998885

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.90  E-value=1.5e-23  Score=141.44  Aligned_cols=144  Identities=16%  Similarity=0.033  Sum_probs=112.3

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHh
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKR   64 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~   64 (180)
                      +.|||+++ +.+++++|++|+|+| +|++|++++|++|.+|+ +|+++++++++               +++++.+.+++
T Consensus        13 ~~ta~~a~-~~a~~~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~   90 (174)
T d1jqba2          13 MTTGFHGA-ELADIEMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMK   90 (174)
T ss_dssp             HHHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHH
T ss_pred             HHHHHHHH-HHhCCCCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHH
Confidence            36899998 779999999999998 69999999999999998 79999888775               45678889999


Q ss_pred             HcCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+++ ++|++|||+|++ .++.++.+++++|+++.+|.......  ...+...+....++.++.+......    +...+
T Consensus        91 ~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~--~~~~~~~~~~~~~~~~i~g~~~~~~----r~~~e  164 (174)
T d1jqba2          91 LTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDA--LLIPRVEWGCGMAHKTIKGGLCPGG----RLRAE  164 (174)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSE--EEEETTTTGGGTBCCEEEEBCCCCH----HHHHH
T ss_pred             HhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCc--CcCcHhHHHHHhCccEEEEecCCCC----cccHH
Confidence            9988 899999999976 78999999999999999987553210  0111112334556778888776552    34456


Q ss_pred             HHHHHHHCCC
Q 041355          143 LVIPAIREGK  152 (180)
Q Consensus       143 ~~~~~~~~g~  152 (180)
                      .+.++++.|+
T Consensus       165 ~l~~li~~gk  174 (174)
T d1jqba2         165 RLRDMVVYNR  174 (174)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            7778888764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.89  E-value=2.3e-22  Score=135.47  Aligned_cols=141  Identities=18%  Similarity=0.110  Sum_probs=108.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~~~~~~   64 (180)
                      +|+|+++.+..++++|++|+|+| +|++|++++|++|.+|+ +|+++++++++                ..++......+
T Consensus        14 ~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          14 SSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVIT   92 (174)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHh
Confidence            68999998999999999999998 89999999999999999 68888888776                11223344444


Q ss_pred             Hc-CCCccEEEeCCChh-hHHHHHHhhccC-CEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           65 WF-PQGIDIYFENVGGK-MLDAVLLNMRLR-GRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        65 ~~-~~~~d~~~d~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      .+ ++++|++|||+|.+ ++..++++++++ |+++.+|....      ...+++..++. +.++.|+...++.  ..+.+
T Consensus        93 ~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~------~~~i~~~~~~~-~k~i~Gs~~Gs~~--~~~d~  163 (174)
T d1e3ia2          93 ELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD------EMTIPTVDVIL-GRSINGTFFGGWK--SVDSV  163 (174)
T ss_dssp             HHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS------EEEEEHHHHHT-TCEEEECSGGGCC--HHHHH
T ss_pred             hhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCC------ccccchHHHhc-cCEEEEEEeeCCC--hHHHH
Confidence            44 45999999999987 899999999996 99999987542      22344444444 5678888766542  24567


Q ss_pred             HHHHHHHHCCC
Q 041355          142 ELVIPAIREGK  152 (180)
Q Consensus       142 ~~~~~~~~~g~  152 (180)
                      .++++++.+|+
T Consensus       164 p~li~l~~~GK  174 (174)
T d1e3ia2         164 PNLVSDYKNKK  174 (174)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHCcC
Confidence            78888888875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=136.36  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=111.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHH---HH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDA---AL   62 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~---~~   62 (180)
                      .+||+++ ++.++++|++|+|+| +|++|++++|+++.+|+ +|+++++++++               .+++..+   .+
T Consensus        13 a~a~~a~-~~~~~~~gd~VlI~G-~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          13 SVGIHAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKV   90 (171)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEEC-CCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccc
Confidence            4789998 778999999999998 69999999999999999 89999988766               2233332   23


Q ss_pred             HhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           63 KRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ....+.++|++|||+|++ .++.++++++++|+++.+|....      ...+++..++.+++++.|+....      +.+
T Consensus        91 ~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~------~~~~~~~~~~~k~l~i~Gs~~~~------~~~  158 (171)
T d1pl8a2          91 EGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE------MTTVPLLHAAIREVDIKGVFRYC------NTW  158 (171)
T ss_dssp             HHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS------CCCCCHHHHHHTTCEEEECCSCS------SCH
T ss_pred             cccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCC------CCccCHHHHHHCCcEEEEEeCCH------hHH
Confidence            333344899999999987 78999999999999999987542      33577888999999999986432      246


Q ss_pred             HHHHHHHHCCCcc
Q 041355          142 ELVIPAIREGKMV  154 (180)
Q Consensus       142 ~~~~~~~~~g~~~  154 (180)
                      +++++++++|+++
T Consensus       159 ~~al~li~~gkid  171 (171)
T d1pl8a2         159 PVAISMLASKSVN  171 (171)
T ss_dssp             HHHHHHHHTTSCC
T ss_pred             HHHHHHHHcCCCC
Confidence            7889999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.6e-23  Score=137.11  Aligned_cols=140  Identities=18%  Similarity=0.187  Sum_probs=105.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Cc--chHHHHHHhHcC-CCc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EE--PDLDAALKRWFP-QGI   70 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~--~~~~~~~~~~~~-~~~   70 (180)
                      +|+|+++ +..++++|++|+|+| +|++|++++|+||.+|++++++++++++        .+  -+..+....... +++
T Consensus        17 ~Tay~al-~~~~~~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~   94 (168)
T d1uufa2          17 ITTYSPL-RHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSF   94 (168)
T ss_dssp             HHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCE
T ss_pred             HHHHHHH-HHhCCCCCCEEEEec-cchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCC
Confidence            4789999 679999999999998 6999999999999999998888888775        00  011111112222 389


Q ss_pred             cEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHHHHH
Q 041355           71 DIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIPAIR  149 (180)
Q Consensus        71 d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      |++|||+|.+ .+..++.+++++|+++.+|...+     .....+...++.+++++.|+...+     +..++++++++.
T Consensus        95 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~l~~k~~~i~Gs~~~~-----~~d~~e~l~l~a  164 (168)
T d1uufa2          95 DFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPAT-----PHKSPEVFNLIMKRRAIAGSMIGG-----IPETQEMLDFCA  164 (168)
T ss_dssp             EEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCC-----HHHHHHHHHHHH
T ss_pred             ceeeeeeecchhHHHHHHHHhcCCEEEEeccCCC-----CcccccHHHHHHCCcEEEEEeecC-----HHHHHHHHHHHH
Confidence            9999999976 79999999999999999987543     233456778888999999998766     344667788877


Q ss_pred             CCCc
Q 041355          150 EGKM  153 (180)
Q Consensus       150 ~g~~  153 (180)
                      ++++
T Consensus       165 ~~~I  168 (168)
T d1uufa2         165 EHGI  168 (168)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            6553

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.8e-22  Score=135.32  Aligned_cols=137  Identities=18%  Similarity=0.223  Sum_probs=111.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++ ++.++++|++|+|+| +|++|++++|++|.+|++|+++++++++               .+++..+.+++.+
T Consensus        14 ~Ta~~al-~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          14 VTVYKGL-KQTNARPGQWVAISG-IGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEee-ccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhh
Confidence            5799998 668999999999998 6999999999999999999999998765               4556777777766


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      .+..++++++.+.+.+..++++++++|+++.+|....      ...++...++.+++++.|+....     ++.++++++
T Consensus        92 ~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~Gs~~~~-----~~d~~e~l~  160 (166)
T d1llua2          92 GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPG------DFPTPIFDVVLKGLHIAGSIVGT-----RADLQEALD  160 (166)
T ss_dssp             SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSCC-----HHHHHHHHH
T ss_pred             cCCcccccccccchHHHHHHHHhcCCcEEEEEEecCC------CccCCHHHHHhCCcEEEEEeecC-----HHHHHHHHH
Confidence            6544555555556689999999999999999986542      23567788999999999988765     345778888


Q ss_pred             HHHCC
Q 041355          147 AIREG  151 (180)
Q Consensus       147 ~~~~g  151 (180)
                      ++.+|
T Consensus       161 l~~~G  165 (166)
T d1llua2         161 FAGEG  165 (166)
T ss_dssp             HHHTT
T ss_pred             HHHCc
Confidence            88887

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.88  E-value=2.8e-22  Score=134.53  Aligned_cols=140  Identities=21%  Similarity=0.215  Sum_probs=117.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHHhHc
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALKRWF   66 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~~~~   66 (180)
                      +|||+++ +..++++|++|+|+| +|++|++++|+++..|++|+++++++++               .++++.+.+++.+
T Consensus        14 ~Ta~~al-~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          14 VTTYKAL-KVTGAKPGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH
T ss_pred             HHHHHHH-HHhCCCCCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc
Confidence            5799998 678899999999998 6999999999999999999999988776               4567788888888


Q ss_pred             CCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHHH
Q 041355           67 PQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVIP  146 (180)
Q Consensus        67 ~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ++..|+++|+.+.+.+..++++++++|+++.+|....      ...++...++.+++++.|+...+     ++.++++++
T Consensus        92 ~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~------~~~~~~~~~~~~~~~i~gs~~~~-----~~~~~~~l~  160 (168)
T d1rjwa2          92 GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE------EMPIPIFDTVLNGIKIIGSIVGT-----RKDLQEALQ  160 (168)
T ss_dssp             SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSCC-----HHHHHHHHH
T ss_pred             CCCceEEeecCCHHHHHHHHHHhccCCceEecccccC------CCCCCHHHHHHCCcEEEEEeeCC-----HHHHHHHHH
Confidence            7766666666666689999999999999999987542      33567788899999999988765     456888999


Q ss_pred             HHHCCCcc
Q 041355          147 AIREGKMV  154 (180)
Q Consensus       147 ~~~~g~~~  154 (180)
                      ++++|+++
T Consensus       161 l~~~Gkik  168 (168)
T d1rjwa2         161 FAAEGKVK  168 (168)
T ss_dssp             HHHTTSCC
T ss_pred             HHHhCCCC
Confidence            99999875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2e-23  Score=140.83  Aligned_cols=141  Identities=18%  Similarity=0.181  Sum_probs=106.2

Q ss_pred             chHHHHHH---HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------CcchHHHHHH
Q 041355            2 LIVGNLII---LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------EEPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~---~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------~~~~~~~~~~   63 (180)
                      +|||+++.   +....+.+++|||+||+|++|++++|+||.+|++||++++++++               +++++.   +
T Consensus        14 lTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~---~   90 (177)
T d1o89a2          14 FTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAES---R   90 (177)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSC---C
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHH---H
Confidence            57886653   33445566799999999999999999999999999999999876               111111   1


Q ss_pred             hHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccch-HHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDY-YHLYLKFLE  142 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  142 (180)
                      ...+..+|.++|++|++++...+++++++|+++.+|...+.     ..+.+...++.+++++.|++.... ++...+.|+
T Consensus        91 ~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~-----~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~  165 (177)
T d1o89a2          91 PLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF-----TLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQ  165 (177)
T ss_dssp             SSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS-----CCCCCSHHHHHHCCEEEECCSSSCCHHHHHHHHH
T ss_pred             HHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCc-----cccccHHHHHHCCCeEEEEecccCCHHHHHHHHH
Confidence            11223689999999999999999999999999999987643     345567788999999999866433 455556666


Q ss_pred             HHHHHHHC
Q 041355          143 LVIPAIRE  150 (180)
Q Consensus       143 ~~~~~~~~  150 (180)
                      ++.+.+.+
T Consensus       166 ~L~~~l~~  173 (177)
T d1o89a2         166 RLVADLPE  173 (177)
T ss_dssp             HHHHHSCH
T ss_pred             HHHHhccc
Confidence            66655443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.88  E-value=1.1e-21  Score=132.56  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-----------------CcchHHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-----------------EEPDLDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-----------------~~~~~~~~~~   63 (180)
                      +|+|+++.+..++++|++|+|+| +|++|++++|++|.+|+ .|+++++++++                 ...+..+.++
T Consensus        14 ~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          14 STGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLI   92 (176)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHH
Confidence            58999998889999999999999 58999999999999998 67777777766                 1234455566


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +.+++++|++|||+|.+ .+..+..+++++|+++.++.....   . .........+.++.++.|+.+.+..  ..+.+.
T Consensus        93 ~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~---~-~~~~~~~~~~~~~~~i~Gs~~G~~~--~~~d~~  166 (176)
T d2fzwa2          93 EMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAAS---G-EEIATRPFQLVTGRTWKGTAFGGWK--SVESVP  166 (176)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCT---T-CCEEECTHHHHTTCEEEECSGGGCC--HHHHHH
T ss_pred             HHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccc---c-ccccccHHHHHCCCEEEEEeeeCCc--HHHHHH
Confidence            66667999999999977 667788888888888877554432   1 1122223345577899998876542  245678


Q ss_pred             HHHHHHHCCC
Q 041355          143 LVIPAIREGK  152 (180)
Q Consensus       143 ~~~~~~~~g~  152 (180)
                      ++++++.+|+
T Consensus       167 ~li~l~~~GK  176 (176)
T d2fzwa2         167 KLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            8899998885

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=7e-23  Score=137.52  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=109.6

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCC
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQ   68 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~   68 (180)
                      +|+|+++ ++.++++|++|+|+| +|++|++++|++|.+|++|+++++++++             +..+ .....+...+
T Consensus        14 ~Ta~~al-~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~-~~~~~~~~~~   90 (168)
T d1piwa2          14 LTVYSPL-VRNGCGPGKKVGIVG-LGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLE-EGDWGEKYFD   90 (168)
T ss_dssp             HHHHHHH-HHTTCSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGG-TSCHHHHSCS
T ss_pred             HHHHHHH-HHhCcCCCCEEEEEC-CCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccc-hHHHHHhhhc
Confidence            5799999 578999999999999 6999999999999999999999998886             0000 0122233345


Q ss_pred             CccEEEeCCChh---hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHHHHH
Q 041355           69 GIDIYFENVGGK---MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLELVI  145 (180)
Q Consensus        69 ~~d~~~d~~g~~---~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      ++|+++||++..   .+..++++++++|+++.+|....      ...++...++.+++++.|+...+     ++.+++++
T Consensus        91 ~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~Gs~~g~-----~~~~~e~l  159 (168)
T d1piwa2          91 TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ------HEMLSLKPYGLKAVSISYSALGS-----IKELNQLL  159 (168)
T ss_dssp             CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS------SCCEEECGGGCBSCEEEECCCCC-----HHHHHHHH
T ss_pred             ccceEEEEecCCccchHHHHHHHhhccceEEEeccccc------cccccHHHHHhCCcEEEEEeeCC-----HHHHHHHH
Confidence            899999998854   47788899999999999986542      22455567788999999988766     34578899


Q ss_pred             HHHHCCCcc
Q 041355          146 PAIREGKMV  154 (180)
Q Consensus       146 ~~~~~g~~~  154 (180)
                      +++++|+++
T Consensus       160 ~li~~gkIk  168 (168)
T d1piwa2         160 KLVSEKDIK  168 (168)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCCC
Confidence            999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.87  E-value=1.7e-21  Score=131.31  Aligned_cols=142  Identities=16%  Similarity=0.094  Sum_probs=107.3

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Ccc-h-HHHHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEP-D-LDAALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~-~-~~~~~~   63 (180)
                      +|+|+++.+..++++|++|+|+| +|++|++++|++|.+|+ +|+++++++++               +.. + ..+..+
T Consensus        13 ~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          13 ATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHH
Confidence            68999998999999999999999 79999999999999998 78888888876               112 2 344445


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhcc-CCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRL-RGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ..+++++|++|||+|.. .+...+..+++ +|+++.+|....    ....++++.. +.++.++.|+.+..+.   .+.+
T Consensus        92 ~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~----~~~~~~~~~~-~~~~~~i~Gs~~G~~~---~~d~  163 (174)
T d1p0fa2          92 EKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP----NERLPLDPLL-LLTGRSLKGSVFGGFK---GEEV  163 (174)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT----TCCEEECTHH-HHTTCEEEECSGGGCC---GGGH
T ss_pred             HhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecC----ccccccCHHH-HhCCCEEEEEEeCCCC---HHHH
Confidence            55556999999999976 77778877765 599999987543    1223344333 3467899998865531   2356


Q ss_pred             HHHHHHHHCCC
Q 041355          142 ELVIPAIREGK  152 (180)
Q Consensus       142 ~~~~~~~~~g~  152 (180)
                      .++++++.+|+
T Consensus       164 ~~lidl~~~gK  174 (174)
T d1p0fa2         164 SRLVDDYMKKK  174 (174)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHcCC
Confidence            78888888875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.86  E-value=1.4e-20  Score=127.10  Aligned_cols=144  Identities=17%  Similarity=0.123  Sum_probs=107.0

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHH-HHHH
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLD-AALK   63 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~-~~~~   63 (180)
                      +|+|+++.+..++++||+|+|+| +|++|++++|+++..|+ +|+++++++++                +.++.. ...+
T Consensus        14 ~Tay~al~~~~~vk~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~   92 (176)
T d2jhfa2          14 STGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLT   92 (176)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEC-CCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHH
Confidence            68999998999999999999999 58899999999999987 89999988886                122333 4444


Q ss_pred             hHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           64 RWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        64 ~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      ...++++|++|||+|.+ .+..++..++++|+.+.++.....    .........++.+++++.|+.....  ..++.+.
T Consensus        93 ~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Gs~~G~~--~~~~~~~  166 (176)
T d2jhfa2          93 EMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPD----SQNLSMNPMLLLSGRTWKGAIFGGF--KSKDSVP  166 (176)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCT----TCCEEECTHHHHTTCEEEECSGGGC--CHHHHHH
T ss_pred             HHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCC----cccccccHHHHhCCCEEEEEEEeCC--CHHHHHH
Confidence            44555999999999977 677888888887655555443321    1122233356678999999887553  2255678


Q ss_pred             HHHHHHHCCC
Q 041355          143 LVIPAIREGK  152 (180)
Q Consensus       143 ~~~~~~~~g~  152 (180)
                      ++++++.+|+
T Consensus       167 ~li~~~~~GK  176 (176)
T d2jhfa2         167 KLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHCcC
Confidence            8888888875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=9.4e-21  Score=129.70  Aligned_cols=145  Identities=16%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------CcchHHHHHHh
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EEPDLDAALKR   64 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~~~~~~~~~~   64 (180)
                      |.|||+++ +.+++++|++|+|+| +|++|++++|++|.+|+ +|+++++++++               .++++.+.+.+
T Consensus        11 ~~ta~~a~-~~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~   88 (195)
T d1kola2          11 LPTGYHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAA   88 (195)
T ss_dssp             HHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHH
T ss_pred             HHHHHHHH-HHhCCCCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHH
Confidence            35899998 679999999999998 79999999999999998 88888888765               45688889999


Q ss_pred             HcCC-CccEEEeCCCh----------------hhHHHHHHhhccCCEEEEEeccccccCCC-------CccccchHHHhh
Q 041355           65 WFPQ-GIDIYFENVGG----------------KMLDAVLLNMRLRGRIAVSSIISQYNLEK-------PEGVHNLEQLIG  120 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~----------------~~~~~~~~~l~~~G~~v~~~~~~~~~~~~-------~~~~~~~~~~~~  120 (180)
                      .+++ ++|++|||+|.                ++++.++++++++|+++.+|...+.....       ......+...+.
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWA  168 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHH
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCceeeeHHHHHh
Confidence            9988 99999999984                37899999999999999999755321110       011233344566


Q ss_pred             cCcEEEeeeccchHHHHHHHHHHHHHHHHCCC
Q 041355          121 KRIRLEGFLAGDYYHLYLKFLELVIPAIREGK  152 (180)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  152 (180)
                      +++++.+-.. +    .++.++++++++.+++
T Consensus       169 k~~~i~~g~~-~----v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         169 KSHSFHTGQT-P----VMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TTCEEEESSC-C----HHHHHHHHHHHHHTTS
T ss_pred             hcceeccCCC-c----hHHHHHHHHHHHHcCC
Confidence            6776643222 1    2445667777777654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.83  E-value=4.2e-20  Score=124.54  Aligned_cols=141  Identities=15%  Similarity=0.076  Sum_probs=104.8

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC---------------Cc-chHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK---------------EE-PDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~---------------~~-~~~~~~~~~   64 (180)
                      +|+|+++.+..++++|++|+|+| +|++|++++|++|.+|+ +|++++.++++               .+ ....+.+.+
T Consensus        15 ~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~   93 (176)
T d1d1ta2          15 STGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLS   93 (176)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHH
Confidence            68999998989999999999999 79999999999999997 89999999887               12 223455555


Q ss_pred             HcCC-CccEEEeCCChh-hHHHHHHhhcc-CCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHH
Q 041355           65 WFPQ-GIDIYFENVGGK-MLDAVLLNMRL-RGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFL  141 (180)
Q Consensus        65 ~~~~-~~d~~~d~~g~~-~~~~~~~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      .+.+ ++|+++||+|.. .+...+..+.+ +|+++.+|.+...    ....+++.. +.++.+++|+.+.....  ++++
T Consensus        94 ~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~----~~~~~~~~~-~~~~~~i~Gs~~G~~~~--~~di  166 (176)
T d1d1ta2          94 EMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA----KMLTYDPML-LFTGRTWKGCVFGGLKS--RDDV  166 (176)
T ss_dssp             HHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTT----CCEEECTHH-HHTTCEEEECSGGGCCH--HHHH
T ss_pred             HhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccc----cccCCCHHH-HhCCCEEEEEEEeCCCc--HHHH
Confidence            5555 999999999977 67777776654 5999999876532    222334333 44678999988765422  4556


Q ss_pred             HHHHHHHHC
Q 041355          142 ELVIPAIRE  150 (180)
Q Consensus       142 ~~~~~~~~~  150 (180)
                      .++++++.+
T Consensus       167 p~li~~~~~  175 (176)
T d1d1ta2         167 PKLVTEFLA  175 (176)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            666666543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.83  E-value=8.8e-20  Score=122.98  Aligned_cols=143  Identities=15%  Similarity=0.075  Sum_probs=106.2

Q ss_pred             chHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------CcchHHHHHHh
Q 041355            2 LIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------EEPDLDAALKR   64 (180)
Q Consensus         2 l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------~~~~~~~~~~~   64 (180)
                      +|+|+++.+..++++|++|+|+| +|++|++++|.++..|+ +|+++++++++                ++.+.....++
T Consensus        14 ~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          14 STGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             HHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHH
Confidence            68999998999999999999999 79999999999999988 78888888876                12233455555


Q ss_pred             HcC-CCccEEEeCCChh-hHHHHHHhhccCCEEEEEeccccccCCCCccccchHHHhhcCcEEEeeeccchHHHHHHHHH
Q 041355           65 WFP-QGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYLKFLE  142 (180)
Q Consensus        65 ~~~-~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+. +++|+++|++|.. .+..++.+++++|..+.++...+.     .........+.++.++.|+....+.  .++.+.
T Consensus        93 ~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~-----~~~~~~~~~~~~~~~i~Gs~~G~~~--~~~d~~  165 (175)
T d1cdoa2          93 KMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-----HDVATRPIQLIAGRTWKGSMFGGFK--GKDGVP  165 (175)
T ss_dssp             HHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS-----SCEEECHHHHHTTCEEEECSGGGCC--HHHHHH
T ss_pred             hhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC-----cccCccHHHHHCCcEEEEEEEeCCc--HHHHHH
Confidence            554 4999999999976 677777887777555444333321     1223344556678899998876542  356788


Q ss_pred             HHHHHHHCCC
Q 041355          143 LVIPAIREGK  152 (180)
Q Consensus       143 ~~~~~~~~g~  152 (180)
                      ++++++.+|+
T Consensus       166 ~~i~l~~~gK  175 (175)
T d1cdoa2         166 KMVKAYLDKK  175 (175)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            8999998875

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.2e-13  Score=76.42  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=44.0

Q ss_pred             chHHHHHH---HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355            2 LIVGNLII---LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus         2 l~a~~~l~---~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|||+++.   +....+++++|+|+||+|+||.+++|++|.+|++|++++++++
T Consensus        14 lTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          14 FTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             HHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            46776654   4456789999999999999999999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=2.8e-07  Score=63.66  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Ccc----hHHHHHHhHcCC-CccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEP----DLDAALKRWFPQ-GIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~----~~~~~~~~~~~~-~~d~~~d~~g   78 (180)
                      +|++|||+||++++|.+.++.+...|++|+.+++.+..            ...    .....+.+..+. ++|+++.++|
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG   80 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAG   80 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCc
Confidence            58999999999999999999999999999988776554            111    122333333333 7999999987


Q ss_pred             hh------------h---------------HHHHHHhhccCCEEEEEecccc
Q 041355           79 GK------------M---------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        79 ~~------------~---------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      .-            .               ...+++.++++|+++.+++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~  132 (236)
T d1dhra_          81 GWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA  132 (236)
T ss_dssp             CCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             ccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHH
Confidence            30            0               1234456688899999987654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.34  E-value=1.2e-06  Score=60.38  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------Ccc----hHHHHHHhHc-CCCccEEEeCCCh
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEP----DLDAALKRWF-PQGIDIYFENVGG   79 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~----~~~~~~~~~~-~~~~d~~~d~~g~   79 (180)
                      +.+|||+||++++|.+.++.+...|++|+.++++++.            ...    ...+.+.... .+++|+++.+.|.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~   81 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG   81 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCcc
Confidence            3568999999999999999999999999999998664            111    1122233322 3589999999873


Q ss_pred             h------------h---------------HHHHHHhhccCCEEEEEecccc
Q 041355           80 K------------M---------------LDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        80 ~------------~---------------~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      .            .               ....++.++++|+++.+++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~  132 (235)
T d1ooea_          82 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  132 (235)
T ss_dssp             CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             cccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence            0            0               1234456678899999987654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.26  E-value=1.9e-06  Score=60.27  Aligned_cols=88  Identities=18%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchH---HHHHHhHcCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDL---DAALKRWFPQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~---~~~~~~~~~~~   69 (180)
                      +|++++|+||++++|.+.++.+...|++|+.+++++++                       +.++.   .+.+.+..++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999999999988654                       12222   23333444567


Q ss_pred             ccEEEeCCChhh--------------------------HHHHHHhh--ccCCEEEEEecccc
Q 041355           70 IDIYFENVGGKM--------------------------LDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        70 ~d~~~d~~g~~~--------------------------~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      +|+++.+.|...                          ...+++.+  +.+|+++.+++..+
T Consensus        87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  148 (259)
T d1xq1a_          87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAG  148 (259)
T ss_dssp             CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----
T ss_pred             cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccc
Confidence            999999987410                          13334444  34689999987654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=4.6e-06  Score=57.85  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHc--CCCccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWF--PQGIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~d~~~d~   76 (180)
                      .|+++||+||++++|.+.++.+...|++|+.++++++.                 +.++..+.+.+..  .+++|+++.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            58999999999999999999999999999999988664                 2222222222222  1479999998


Q ss_pred             CChh--------------------------hHHHHHHhhcc--CCEEEEEeccccc
Q 041355           77 VGGK--------------------------MLDAVLLNMRL--RGRIAVSSIISQY  104 (180)
Q Consensus        77 ~g~~--------------------------~~~~~~~~l~~--~G~~v~~~~~~~~  104 (180)
                      +|..                          ....+++.+++  +|+++++++..+.
T Consensus        84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~  139 (248)
T d2d1ya1          84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  139 (248)
T ss_dssp             CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence            8741                          02344556643  5899999877653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=3.7e-06  Score=58.49  Aligned_cols=87  Identities=18%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHc--CCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWF--PQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~--~~~   69 (180)
                      +|++++|+||++++|.+.++.+...|++|+.++++.++                        +.+++...+.+..  .++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999988654                        2222222222221  147


Q ss_pred             ccEEEeCCChh--------------------------hHHHHHHhhc--cCCEEEEEeccc
Q 041355           70 IDIYFENVGGK--------------------------MLDAVLLNMR--LRGRIAVSSIIS  102 (180)
Q Consensus        70 ~d~~~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~~~~~  102 (180)
                      +|+++.++|..                          ..+.+++.++  .+|+++.+++..
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~  144 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  144 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccch
Confidence            99999998741                          0234456663  458999998754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=2.5e-06  Score=59.08  Aligned_cols=88  Identities=24%  Similarity=0.390  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      +|++++|+||++++|.+.++.+...|++|+.++++++.                    +.++..+.+.+..  .+++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            48899999999999999999999999999999988654                    2222222222222  2589999


Q ss_pred             EeCCChh--------------------------hHHHHHHhh--ccCCEEEEEecccc
Q 041355           74 FENVGGK--------------------------MLDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        74 ~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      +.+.|..                          ..+.+++.+  +.+|+++.+++..+
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~  140 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVG  140 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhh
Confidence            9988741                          023445555  34689999987654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.15  E-value=5.3e-06  Score=58.28  Aligned_cols=87  Identities=17%  Similarity=0.268  Sum_probs=62.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHcC--CC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWFP--QG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~~--~~   69 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++                        +.+++.+.+.+...  ++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999998887543                        22333333333222  47


Q ss_pred             ccEEEeCCChh--------------------------hHHHHHHhhccCCEEEEEeccc
Q 041355           70 IDIYFENVGGK--------------------------MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        70 ~d~~~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      +|+++.+.|..                          ....+++.+.+.|+.+.+.+..
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~  155 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  155 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence            89999888741                          1244556778889998887654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.4e-06  Score=57.81  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|+++||+||++++|.+.++.+...|++|+.++++.++
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN   46 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999999999998888899999999987654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.13  E-value=4.3e-06  Score=58.20  Aligned_cols=89  Identities=18%  Similarity=0.173  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      +|++++|+||++++|.+.++.+...|++|+.+++++++                    +.++..+.+.+..  .+++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            57899999999999999999999999999999987653                    2222222222222  2579999


Q ss_pred             EeCCChh--------------------------hHHHHHHhhc-cCCEEEEEeccccc
Q 041355           74 FENVGGK--------------------------MLDAVLLNMR-LRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~--------------------------~~~~~~~~l~-~~G~~v~~~~~~~~  104 (180)
                      +.+.|..                          ....+++.++ .+|+++.+++..+.
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence            9998841                          0234455564 56999999876643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.11  E-value=3.1e-06  Score=59.09  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=50.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------Ccch---HHHHHHhHcCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPD---LDAALKRWFPQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~---~~~~~~~~~~~~   69 (180)
                      +|+++||+||++++|.+.++.+...|++|+.+++++++                       +.++   +.+.+.+..++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999998654                       2222   233444555567


Q ss_pred             ccEEEeCCCh
Q 041355           70 IDIYFENVGG   79 (180)
Q Consensus        70 ~d~~~d~~g~   79 (180)
                      +|+++.+.|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999998874

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.11  E-value=5.4e-06  Score=57.87  Aligned_cols=89  Identities=19%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------------CcchHHHHHHhHc--CC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------------EEPDLDAALKRWF--PQ   68 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------------~~~~~~~~~~~~~--~~   68 (180)
                      +|+++||+||++++|.+.++.+...|++|+.+++++..                         +.+++.+.+.+..  .|
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            58899999999999999999888999999999987532                         2222222222221  14


Q ss_pred             CccEEEeCCChh--------------------------hHHHHHHhhc--cCCEEEEEeccccc
Q 041355           69 GIDIYFENVGGK--------------------------MLDAVLLNMR--LRGRIAVSSIISQY  104 (180)
Q Consensus        69 ~~d~~~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~~~~~~~  104 (180)
                      ++|+++.++|..                          ....+++.++  .+|+++.+.+..+.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  146 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL  146 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccce
Confidence            799999998741                          0133455553  35899999877653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.09  E-value=4.5e-06  Score=58.27  Aligned_cols=88  Identities=24%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHHHHHHhHc--CCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLDAALKRWF--PQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~~~~~~~~--~~~   69 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++                        +.++....+.+..  .++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999988776543                        2222222222221  247


Q ss_pred             ccEEEeCCChh--------------------------hHHHHHHhhccCCEEEEEecccc
Q 041355           70 IDIYFENVGGK--------------------------MLDAVLLNMRLRGRIAVSSIISQ  103 (180)
Q Consensus        70 ~d~~~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~~~~~~  103 (180)
                      +|+++.+.|..                          ....+++.++++|+++.+.+...
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~  144 (259)
T d1ja9a_          85 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA  144 (259)
T ss_dssp             EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccc
Confidence            99999988751                          12445566777888877765543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.08  E-value=4.1e-06  Score=58.50  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchH---HHHHHhHcCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDL---DAALKRWFPQG   69 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~---~~~~~~~~~~~   69 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++                       +.++.   .+.+.+..+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            68999999999999999999988999999999987554                       22222   23333344457


Q ss_pred             ccEEEeCCChh-----------h---------------HHHHHHhh--ccCCEEEEEecccc
Q 041355           70 IDIYFENVGGK-----------M---------------LDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        70 ~d~~~d~~g~~-----------~---------------~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      +|+++.+.|..           .               ...+++.+  ..+|+++.+++..+
T Consensus        87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  148 (259)
T d2ae2a_          87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSG  148 (259)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGG
T ss_pred             ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccc
Confidence            99999998841           0               12334444  34689999987664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=4.2e-06  Score=57.66  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHc--CCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWF--PQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~--~~~~d~~~d~~g~   79 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++.            +.+++.+.+.+..  .+++|+++.++|.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~   83 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL   83 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeecc
Confidence            57899999999999999999999999999999998776            2223322222222  2479999998874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.05  E-value=4.3e-06  Score=55.69  Aligned_cols=63  Identities=25%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHcCCCccEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      +|++++|+||+|++|..+.+.+...|++|+.++++.++                  -+..-.+.+.+.. +++|+++.+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~iDilin~A  100 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV-KGAHFVFTAG  100 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT-TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh-cCcCeeeecC
Confidence            78999999999999999999999999999999998765                  0001122333333 3689999987


Q ss_pred             Ch
Q 041355           78 GG   79 (180)
Q Consensus        78 g~   79 (180)
                      |.
T Consensus       101 g~  102 (191)
T d1luaa1         101 AI  102 (191)
T ss_dssp             CT
T ss_pred             cc
Confidence            74

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.05  E-value=6.2e-06  Score=57.28  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchHHHHHHhHc--CCCc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDLDAALKRWF--PQGI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~   70 (180)
                      +++.++|+||++++|.+.++.+...|++|+.++++++.                       +.+++...+.+..  .+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            47889999999999999999888899999999987543                       2222222222221  2589


Q ss_pred             cEEEeCCChh-----------h---------------HHHHHHhh--ccCCEEEEEecccc
Q 041355           71 DIYFENVGGK-----------M---------------LDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        71 d~~~d~~g~~-----------~---------------~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      |+++.+.|..           .               ...+++.+  .++|+++.+++..+
T Consensus        89 Dilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  149 (251)
T d2c07a1          89 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVG  149 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             eeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHh
Confidence            9999988741           0               13334444  35699999987654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=7.6e-06  Score=56.58  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHcCCCccEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++                  .+++-.+.+.+.. +++|+++.+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-g~iDilVnnA   84 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV-GPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC-CCCCEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh-CCceEEEecc
Confidence            68999999999999999999999999999999987654                  2222222333222 4799999988


Q ss_pred             Ch
Q 041355           78 GG   79 (180)
Q Consensus        78 g~   79 (180)
                      |.
T Consensus        85 g~   86 (244)
T d1pr9a_          85 AV   86 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=1.9e-05  Score=56.24  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            588999999999999999999999999999987654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=8.1e-06  Score=56.37  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHcCCCccEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++                  .+++-.+.+.+.. +++|+++.+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g~iDilVnnA   82 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI-GPVDLLVNNA   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC-CCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc-CCCeEEEECC
Confidence            58999999999999999999999999999999988654                  2222222222222 4899999988


Q ss_pred             Ch
Q 041355           78 GG   79 (180)
Q Consensus        78 g~   79 (180)
                      |.
T Consensus        83 g~   84 (242)
T d1cyda_          83 AL   84 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.7e-06  Score=59.18  Aligned_cols=85  Identities=21%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             CCEE-EEecCCchHHHHHHH-HHHHcCCEEEEEeCCCCC-----------------------CcchH---HHHHHhHcCC
Q 041355           17 GEYV-YVSAASGAVGQLVGQ-FAKLAGCYVVGSAGSKEK-----------------------EEPDL---DAALKRWFPQ   68 (180)
Q Consensus        17 g~~v-lI~Ga~g~vG~~~iq-lak~~g~~vi~~~~~~~~-----------------------~~~~~---~~~~~~~~~~   68 (180)
                      |.+| ||+||++++|.++++ +++..|++|+.++++.++                       +.++.   .+.+.+.. +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-G   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-C
Confidence            6667 899999999998665 566678999999998664                       11122   23333322 4


Q ss_pred             CccEEEeCCChh-----------h---------------HHHHHHhhccCCEEEEEeccc
Q 041355           69 GIDIYFENVGGK-----------M---------------LDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        69 ~~d~~~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      ++|+++.+.|-.           .               ...+++.+++.|+++.+.+..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~  140 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM  140 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            799999988731           0               123345567789999987643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.99  E-value=5.1e-06  Score=57.43  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHH---HHHhHcCCCccEEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDA---ALKRWFPQGIDIYF   74 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~---~~~~~~~~~~d~~~   74 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++                  +.+++.+   .+.+.. +++|+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iDilV   82 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL-GRLDGVV   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH-SSCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc-CCceEEE
Confidence            47899999999999999999999999999999988654                  2223322   223322 4799999


Q ss_pred             eCCCh
Q 041355           75 ENVGG   79 (180)
Q Consensus        75 d~~g~   79 (180)
                      .+.|.
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            98874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=5.3e-06  Score=57.41  Aligned_cols=89  Identities=24%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHcC--CCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWFP--QGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~~--~~~d~~   73 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++                    +.+++.+.+.+...  +++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            57899999999999999999999999999999988654                    22233333333222  479999


Q ss_pred             EeCCChh-----------h---------------HHHHHHhh--ccCCEEEEEeccccc
Q 041355           74 FENVGGK-----------M---------------LDAVLLNM--RLRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~-----------~---------------~~~~~~~l--~~~G~~v~~~~~~~~  104 (180)
                      +.+.|..           .               ...+++.+  +++|+++.+++..+.
T Consensus        85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  143 (244)
T d1nffa_          85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL  143 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc
Confidence            9998741           0               12233444  346899999877653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.97  E-value=7.7e-06  Score=57.07  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999999999999999999999999998765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.5e-06  Score=57.63  Aligned_cols=88  Identities=20%  Similarity=0.209  Sum_probs=61.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------------CcchHHHHHHhHcC--C
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------------EEPDLDAALKRWFP--Q   68 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------------~~~~~~~~~~~~~~--~   68 (180)
                      .|+++||+||++++|.+.++.+...|++|+.++++.++                         +.+++.+.+.+...  |
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999987543                         22222222322222  4


Q ss_pred             CccEEEeCCChh---h---------------HHHHHHhhcc-----CCEEEEEecccc
Q 041355           69 GIDIYFENVGGK---M---------------LDAVLLNMRL-----RGRIAVSSIISQ  103 (180)
Q Consensus        69 ~~d~~~d~~g~~---~---------------~~~~~~~l~~-----~G~~v~~~~~~~  103 (180)
                      ++|+++.+.|..   .               ...+++.+++     +|+++++++..+
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~  139 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  139 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence            799999998841   1               1233445532     478999987664

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.95  E-value=6.4e-06  Score=57.32  Aligned_cols=89  Identities=21%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++                    ++++..+.+.+..  .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            58899999999999999999888899999999988654                    2223332222222  1479999


Q ss_pred             EeCCChh--------------------------hHHHHHHhh--ccCCEEEEEeccccc
Q 041355           74 FENVGGK--------------------------MLDAVLLNM--RLRGRIAVSSIISQY  104 (180)
Q Consensus        74 ~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~~~~~~~  104 (180)
                      +.+.|..                          ....+++.+  +.+|+++.+++..+.
T Consensus        84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~  142 (254)
T d1hdca_          84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL  142 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc
Confidence            9988741                          013334443  346999999877653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.9e-05  Score=55.29  Aligned_cols=38  Identities=34%  Similarity=0.387  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|+++||+||++++|.+.++.+...|++|+.++++.++
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58999999999999999888888899999999998654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.94  E-value=9.6e-06  Score=56.39  Aligned_cols=89  Identities=19%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------Ccc-hHHHHHHhHcC--C
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEP-DLDAALKRWFP--Q   68 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~-~~~~~~~~~~~--~   68 (180)
                      .|++++|+||++++|.+.+..+-..|++|+.+++++++                        .+. ++.+.+.+...  +
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            48899999999999999888888889999888887664                        121 22222222222  4


Q ss_pred             CccEEEeCCChh---h---------------HHHHHHhhc-----cCCEEEEEeccccc
Q 041355           69 GIDIYFENVGGK---M---------------LDAVLLNMR-----LRGRIAVSSIISQY  104 (180)
Q Consensus        69 ~~d~~~d~~g~~---~---------------~~~~~~~l~-----~~G~~v~~~~~~~~  104 (180)
                      ++|+++.++|..   .               ...+++.+.     ++|+++.+.+..+.
T Consensus        84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~  142 (254)
T d1sbya1          84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF  142 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc
Confidence            799999999842   1               123344442     35889888776653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.94  E-value=6.5e-06  Score=57.70  Aligned_cols=63  Identities=19%  Similarity=0.345  Sum_probs=47.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchHHHHHHhHc--CCCcc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDLDAALKRWF--PQGID   71 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~~~~~~~~~--~~~~d   71 (180)
                      +|+++||+||++++|.+.++.+...|++|+.+++++++                      +.+++...+.+..  .+++|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            58899999999999999999998999999999987543                      2223322222222  24799


Q ss_pred             EEEeCCC
Q 041355           72 IYFENVG   78 (180)
Q Consensus        72 ~~~d~~g   78 (180)
                      +++.++|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999887

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.92  E-value=1.3e-05  Score=55.48  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------------------CcchHHHHHHhHc--CCCccE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------------------EEPDLDAALKRWF--PQGIDI   72 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------------------~~~~~~~~~~~~~--~~~~d~   72 (180)
                      +|+.++|+||++++|.+.++.+...|++|+.+++++..                     +.+++...+.+..  .+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47899999999999999999999999999999987654                     2222222222222  247999


Q ss_pred             EEeCCChh-----------h---------------HHHHHHhhc--cCCEEEEEeccccc
Q 041355           73 YFENVGGK-----------M---------------LDAVLLNMR--LRGRIAVSSIISQY  104 (180)
Q Consensus        73 ~~d~~g~~-----------~---------------~~~~~~~l~--~~G~~v~~~~~~~~  104 (180)
                      ++.+.|..           .               ...+++.++  .+|+++.+++..+.
T Consensus        84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  143 (247)
T d2ew8a1          84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW  143 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred             EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc
Confidence            99998741           0               133444553  45899999877653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.91  E-value=7.8e-06  Score=57.06  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.+.++.+-..|++|+.++++++.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58899999999999999999999999999999987653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.90  E-value=2.5e-05  Score=53.89  Aligned_cols=85  Identities=25%  Similarity=0.306  Sum_probs=58.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------CcchHH---HHHHhHcCCCc
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------EEPDLD---AALKRWFPQGI   70 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------~~~~~~---~~~~~~~~~~~   70 (180)
                      ..+||+||++++|.+.++.+...|++|+.++++++.                        +.+++.   +.+.+.. +++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CCC
Confidence            468999999999999999999999999887765442                        222222   2233322 579


Q ss_pred             cEEEeCCChh--------------------------hHHHHHHhh--ccCCEEEEEecccc
Q 041355           71 DIYFENVGGK--------------------------MLDAVLLNM--RLRGRIAVSSIISQ  103 (180)
Q Consensus        71 d~~~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~~~~~~  103 (180)
                      |+++.+.|..                          ..+.+++.+  +.+|+++++++..+
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  141 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG  141 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhh
Confidence            9999988741                          023445555  45799999987654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.90  E-value=7.8e-06  Score=57.57  Aligned_cols=63  Identities=25%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHc--CCCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++                    +.++..+.+.+..  .+++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            58999999999999999999999999999999998664                    2222222222222  2479999


Q ss_pred             EeCCC
Q 041355           74 FENVG   78 (180)
Q Consensus        74 ~d~~g   78 (180)
                      +.+.|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99887

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.7e-06  Score=56.48  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcC--CCccEEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFP--QGIDIYF   74 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~d~~~   74 (180)
                      .|++++|+||++++|.+.++.+-..|++|+.++++++.                   +.++..+.+.+...  +++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            58999999999999999999999999999999987654                   22222222222221  4799999


Q ss_pred             eCCChh----h-----------------------HHHHHHhhc-cCCEEEEEecccc
Q 041355           75 ENVGGK----M-----------------------LDAVLLNMR-LRGRIAVSSIISQ  103 (180)
Q Consensus        75 d~~g~~----~-----------------------~~~~~~~l~-~~G~~v~~~~~~~  103 (180)
                      .+.|..    .                       ...+++.++ .+|+++.+++..+
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~  141 (250)
T d1ydea1          85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG  141 (250)
T ss_dssp             ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH
T ss_pred             ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccc
Confidence            988731    0                       133445554 4589999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=9.4e-06  Score=56.12  Aligned_cols=64  Identities=20%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchHHHHHHhHc--CCCc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDLDAALKRWF--PQGI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~   70 (180)
                      .|+.++|+||++++|...+.-+...|++|+.++++.++                       +.++....+....  .+++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999888888889999999998754                       2222233333222  3479


Q ss_pred             cEEEeCCCh
Q 041355           71 DIYFENVGG   79 (180)
Q Consensus        71 d~~~d~~g~   79 (180)
                      |+++.+.|.
T Consensus        86 dilinnag~   94 (244)
T d1yb1a_          86 SILVNNAGV   94 (244)
T ss_dssp             SEEEECCCC
T ss_pred             ceeEeeccc
Confidence            999999885

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=6.8e-06  Score=57.20  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.+.++.+...|++|+.+++++++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA   47 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            68999999999999999999998999999999987553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.88  E-value=1e-05  Score=56.44  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            5789999999999999999888889999999998865

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.88  E-value=9.6e-06  Score=56.54  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++++|+||++++|.+.++.+-..|++|+.+++++++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999999999999999999999999987653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.88  E-value=8e-06  Score=56.70  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchH---HHHHHhHcCCCc
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDL---DAALKRWFPQGI   70 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~---~~~~~~~~~~~~   70 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++.                      +.++.   .+.+.+.. |++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh-CCc
Confidence            48899999999999999999999999999999987553                      22222   22333322 579


Q ss_pred             cEEEeCCCh
Q 041355           71 DIYFENVGG   79 (180)
Q Consensus        71 d~~~d~~g~   79 (180)
                      |+++.+.|.
T Consensus        84 DiLVnnAg~   92 (251)
T d1zk4a1          84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.87  E-value=6.7e-06  Score=57.26  Aligned_cols=64  Identities=16%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHcC--CCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWFP--QGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~~--~~~d~~   73 (180)
                      +|++++|+||++++|.+.++.+...|++|+.++++.++                    +.+++.+.+.+...  +++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            47899999999999999999999999999999987554                    22233322222221  479999


Q ss_pred             EeCCCh
Q 041355           74 FENVGG   79 (180)
Q Consensus        74 ~d~~g~   79 (180)
                      +.+.|.
T Consensus        84 VnnAg~   89 (256)
T d1k2wa_          84 VNNAAL   89 (256)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            999884

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.87  E-value=1e-05  Score=57.35  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            47899999999999999999999999999999998653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.3e-05  Score=54.11  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .|+++||+||++++|.+.++.+...|++|+.+++++++                 ..++..+...+.. +++|+++.+.|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~id~lVn~ag   83 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNVAG   83 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccccccccccccc-ccceeEEeccc
Confidence            57899999999999999999999999999999988654                 2233334443333 47999999887


Q ss_pred             h
Q 041355           79 G   79 (180)
Q Consensus        79 ~   79 (180)
                      .
T Consensus        84 ~   84 (245)
T d2ag5a1          84 F   84 (245)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=2.3e-05  Score=53.77  Aligned_cols=63  Identities=27%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      +|+++||+||++++|.+.++.+...|++|+.++++++.           +-.+..+.+.+.. +++|+++.+.|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~-g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKV-KEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHS-CCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHh-CCCcEEEecccc
Confidence            47899999999999999999999999999999998654           1112233344433 479999998874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.83  E-value=1.3e-05  Score=55.77  Aligned_cols=63  Identities=21%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------CcchHHHHHHhHc--CCCcc
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------------EEPDLDAALKRWF--PQGID   71 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~d   71 (180)
                      |+.+||+||++++|.+.++.+...|++|+.+++++++                       +.+++...+.+..  -+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            6778999999999999999988999999999988553                       2222222222221  25799


Q ss_pred             EEEeCCCh
Q 041355           72 IYFENVGG   79 (180)
Q Consensus        72 ~~~d~~g~   79 (180)
                      +++.+.|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.83  E-value=3.2e-05  Score=49.84  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCCC-
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENVG-   78 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g-   78 (180)
                      .-+|+|.| +|-+|+.+++.|+.+|++|.+.+.+.++                 +++.+.+.++     ..|+++.|+- 
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~-----~aDivI~aali  105 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA-----EADLLIGAVLV  105 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHH-----TCSEEEECCCC
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhc-----cCcEEEEeeec
Confidence            45799999 8999999999999999999999998665                 2223333333     3799999873 


Q ss_pred             --hh----hHHHHHHhhccCCEEEEEeccccc
Q 041355           79 --GK----MLDAVLLNMRLRGRIAVSSIISQY  104 (180)
Q Consensus        79 --~~----~~~~~~~~l~~~G~~v~~~~~~~~  104 (180)
                        ..    .-...++.++|+..++.+....+.
T Consensus       106 pG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG  137 (168)
T d1pjca1         106 PGRRAPILVPASLVEQMRTGSVIVDVAVDQGG  137 (168)
T ss_dssp             TTSSCCCCBCHHHHTTSCTTCEEEETTCTTCC
T ss_pred             CCcccCeeecHHHHhhcCCCcEEEEeecCCCC
Confidence              22    346788999999999999876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.82  E-value=1.1e-05  Score=56.72  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+...|++|+.++++++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999999999999999999999999998754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.4e-05  Score=56.88  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|++++|+||++++|.+.++.+...|++|+.++++.+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6899999999999999999999999999999998753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.81  E-value=1.2e-05  Score=55.45  Aligned_cols=64  Identities=13%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------CcchHHHHHHhHcC--CCccEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPDLDAALKRWFP--QGIDIY   73 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~~~~~~~~~~~--~~~d~~   73 (180)
                      .|++++|+||++++|.+.++-+...|++|+.++++.++                    +.++..+.+.+...  +++|++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            58899999999999999999999999999999998664                    22233222332222  479999


Q ss_pred             EeCCCh
Q 041355           74 FENVGG   79 (180)
Q Consensus        74 ~d~~g~   79 (180)
                      +.+.|.
T Consensus        84 innAg~   89 (241)
T d2a4ka1          84 AHFAGV   89 (241)
T ss_dssp             EEGGGG
T ss_pred             cccccc
Confidence            998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.80  E-value=1.3e-05  Score=56.42  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||++++|.+.++.+-..|++|+.++++++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4889999999999999999999899999999998754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=1.5e-05  Score=55.63  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+.++|+||++++|.+.++.+...|++|+.++++.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5788999999999999999999999999999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=8.4e-06  Score=55.21  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC---CcchHHH-----------HHHh-Hc-CCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK---EEPDLDA-----------ALKR-WF-PQG   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~---~~~~~~~-----------~~~~-~~-~~~   69 (180)
                      +.+...+++|++||-.| +|+ |..++.+++..|-  +|++++.+++.   ....+..           ...+ .. .+.
T Consensus        67 ~l~~l~l~~g~~VLdiG-~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhhccccceEEEec-Ccc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            44778899999999999 554 8888899998763  79988887553   0000000           0000 01 136


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEE
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~   98 (180)
                      ||.|+.+.+-+ ..+.+++.|+|+|+++..
T Consensus       145 fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            99998876655 446778999999999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=4.4e-05  Score=52.89  Aligned_cols=37  Identities=22%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++++|+||+|  ++|.+.++.+...|++|+.+.+++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            588999999887  7999999888888999998888754

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.69  E-value=3.7e-05  Score=53.13  Aligned_cols=37  Identities=22%  Similarity=0.122  Sum_probs=30.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~   53 (180)
                      .++|||+||++++|.+.++.+...|+  +|+.++++.++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~   41 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK   41 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHH
Confidence            37899999999999998877766775  78888887654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.6e-05  Score=50.12  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=56.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcCCCccEEEeCCChh--
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFPQGIDIYFENVGGK--   80 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~~~~d~~~d~~g~~--   80 (180)
                      .++|+|+||+|.+|..++..+...|.+|.+++|++++              +-.+ .+.+.+... +.|++|.|+|..  
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d-~~~l~~al~-~~d~vi~~~g~~~~   80 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQ-AADVDKTVA-GQDAVIVLLGTRND   80 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTS-HHHHHHHHT-TCSEEEECCCCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccc-hhhHHHHhc-CCCEEEEEeccCCc
Confidence            4789999999999999998888889999999998765              1111 223333332 579999998742  


Q ss_pred             ---------hHHHHHHhhccC--CEEEEEeccc
Q 041355           81 ---------MLDAVLLNMRLR--GRIAVSSIIS  102 (180)
Q Consensus        81 ---------~~~~~~~~l~~~--G~~v~~~~~~  102 (180)
                               ....+++.++..  .+++.++...
T Consensus        81 ~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~  113 (205)
T d1hdoa_          81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (205)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeee
Confidence                     123344445444  3777776543

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.65  E-value=8.4e-05  Score=51.37  Aligned_cols=59  Identities=17%  Similarity=0.058  Sum_probs=44.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHH---HHHHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLD---AALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~d~~~d~~g   78 (180)
                      ++||+||++++|.+.++.+...|++|+.++++.+.                 +.++..   +.+.+.. |++|+++.+.|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~-G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHc-CCCCEEEECCc
Confidence            68999999999999998888899999998887665                 233333   3333332 47999998765

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.65  E-value=0.0001  Score=50.76  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHh---HcCCCccEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKR---WFPQGIDIYFENVG   78 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~---~~~~~~d~~~d~~g   78 (180)
                      +.|+|+||++++|.+.++.+...|++|+.+++++++      +.........+   ...+.+|.++.+.|
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~Ag   71 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCHHHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            358999999999999999999999999999988765      11111112222   22336999998876

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.57  E-value=4.9e-05  Score=52.71  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=30.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+||+||++++|.+.++.+...|++|+.+++++++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT   37 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46999999999999888888889999999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.56  E-value=1.8e-05  Score=54.82  Aligned_cols=87  Identities=9%  Similarity=0.093  Sum_probs=57.9

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCCCcchHHHHH----------------HhHcC-CCc
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEKEEPDLDAAL----------------KRWFP-QGI   70 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~~~~~~~~~~----------------~~~~~-~~~   70 (180)
                      ....++||++||-.| +| .|.++..+|+..|  .+|++++.+++. -+...+++                .+... +.|
T Consensus        79 ~~l~i~pG~rVLEiG-~G-sG~lt~~la~~v~~~g~V~~vD~~e~~-~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~f  155 (250)
T d1yb2a1          79 MRCGLRPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDN-LKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY  155 (250)
T ss_dssp             --CCCCTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHH-HHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCE
T ss_pred             HHcCCCCcCEEEEee-ee-CcHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHHHHHhcCCCceEEEEeeeeccccccee
Confidence            567889999999998 44 3788888998875  389999887653 00000111                11122 268


Q ss_pred             cEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           71 DIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      |.++--...+  .+..+.+.|+|+|+++.+.
T Consensus       156 D~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         156 DAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            9876444433  7889999999999998763

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.00011  Score=51.33  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|+++||+||+|  ++|.+.++.+...|++|+.++++++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            489999999876  7999999999999999999998754

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00014  Score=51.23  Aligned_cols=86  Identities=21%  Similarity=0.243  Sum_probs=54.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEE---EeCCCCC--------------------------CcchHHHHHHhHcCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVG---SAGSKEK--------------------------EEPDLDAALKRWFPQG   69 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~---~~~~~~~--------------------------~~~~~~~~~~~~~~~~   69 (180)
                      .+||+||++++|.+.++.+...|++|+.   +.++.+.                          +.++....+.+...+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            4688999999999988888878886443   3333221                          2223333344444468


Q ss_pred             ccEEEeCCChh--------------------------hHHHHHHhh--ccCCEEEEEeccccc
Q 041355           70 IDIYFENVGGK--------------------------MLDAVLLNM--RLRGRIAVSSIISQY  104 (180)
Q Consensus        70 ~d~~~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~~~~~~~  104 (180)
                      +|+++.+.|..                          ....+++.+  +.+|+++++++..+.
T Consensus        84 idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~  146 (285)
T d1jtva_          84 VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL  146 (285)
T ss_dssp             CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred             hhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc
Confidence            99999988741                          013344555  346899999877653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.54  E-value=9.2e-05  Score=51.00  Aligned_cols=36  Identities=6%  Similarity=0.102  Sum_probs=29.5

Q ss_pred             CEEEEecCCchHHHHHHHH-HH--HcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQF-AK--LAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iql-ak--~~g~~vi~~~~~~~~   53 (180)
                      ++|||+||++++|.+.++. ++  ..|++|+.+++++++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            5799999999999987654 44  358899999998775

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.47  E-value=0.00089  Score=46.06  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--CcchHHHHHHhHcCCCccEE-EeCCChhhHHHHHHh
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--EEPDLDAALKRWFPQGIDIY-FENVGGKMLDAVLLN   88 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~~-~d~~g~~~~~~~~~~   88 (180)
                      .++|+.++||+||++++|++.++.+-..|+ +|+.+.++...  ..+...+.+.. .+..+.++ .|....+....+...
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA-LGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhcc
Confidence            468899999999999999998888888898 57767665432  22233333332 12233332 444444466666666


Q ss_pred             hccCCEE
Q 041355           89 MRLRGRI   95 (180)
Q Consensus        89 l~~~G~~   95 (180)
                      +...+.+
T Consensus        84 i~~~~~i   90 (259)
T d2fr1a1          84 IGDDVPL   90 (259)
T ss_dssp             SCTTSCE
T ss_pred             ccccccc
Confidence            6655544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=5.3e-05  Score=52.88  Aligned_cols=90  Identities=21%  Similarity=0.343  Sum_probs=61.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC---CcchHH------------HHHHhHcCC-C
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK---EEPDLD------------AALKRWFPQ-G   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~---~~~~~~------------~~~~~~~~~-~   69 (180)
                      +.....++||++||=.| +|+ |.++..+|+..|  .+|++++.+++.   ..+.+.            ..+...... .
T Consensus        95 Ii~~l~i~pG~~VLDiG-~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~  172 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD  172 (266)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred             HHHhhCCCCCCEEEECC-CCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccc
Confidence            44778999999999998 554 788889999875  589999988664   000000            001111222 6


Q ss_pred             ccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|.++--+..+  .+..+.++|+|+|+++.+.
T Consensus       173 ~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         173 VDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             EEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            78766555544  7899999999999998773

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.42  E-value=0.0003  Score=45.80  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------C--c---ch------H------------HHHH
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------E--E---PD------L------------DAAL   62 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~--~---~~------~------------~~~~   62 (180)
                      -+|+|.| +|-+|+.|++.|+.+|++|.+.+.+.++            .  .   .+      +            .+.+
T Consensus        30 a~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l  108 (183)
T d1l7da1          30 ARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV  108 (183)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred             cEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence            4699999 8999999999999999999999988776            0  0   00      0            1112


Q ss_pred             HhHcCCCccEEEeCC---Chh----hHHHHHHhhccCCEEEEEeccccc
Q 041355           63 KRWFPQGIDIYFENV---GGK----MLDAVLLNMRLRGRIAVSSIISQY  104 (180)
Q Consensus        63 ~~~~~~~~d~~~d~~---g~~----~~~~~~~~l~~~G~~v~~~~~~~~  104 (180)
                      .+... ..|+++-++   |..    .-+..++.++|+..++.+....+.
T Consensus       109 ~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGG  156 (183)
T d1l7da1         109 LKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG  156 (183)
T ss_dssp             HHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             HHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCC
Confidence            22111 589999886   322    346788999999999999876653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.42  E-value=0.00018  Score=49.91  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             CCCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      =.|+++||+||+|  ++|.+.++-+...|++|+.+++++++
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~   44 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   44 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH
Confidence            3689999999654  69999999899999999999887654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.00012  Score=50.58  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHc-CCCccEEEeCCCh
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWF-PQGIDIYFENVGG   79 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~-~~~~d~~~d~~g~   79 (180)
                      .++|++||=.| ||+ |.+++.+++ .|++|++++.++..             +..-....+.... .+.||+++-....
T Consensus       118 ~~~g~~VLDiG-cGs-G~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~  194 (254)
T d2nxca1         118 LRPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA  194 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred             cCccCEEEEcc-cch-hHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccc
Confidence            67999999888 553 667766555 68999999998775             0000000111222 2479999876554


Q ss_pred             h----hHHHHHHhhccCCEEEEEecc
Q 041355           80 K----MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        80 ~----~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      .    .+..+.+.|+|+|+++..+..
T Consensus       195 ~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         195 ELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            4    345566789999999876543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00039  Score=47.84  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|+++||+||++  ++|.+.+..+...|++|+.++++++.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            589999999988  78888888888999999999987654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.40  E-value=0.0002  Score=49.11  Aligned_cols=85  Identities=16%  Similarity=0.156  Sum_probs=54.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCE-------EEEEeCCCCC-----------------------CcchHHHHHHhHc--
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCY-------VVGSAGSKEK-----------------------EEPDLDAALKRWF--   66 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~-------vi~~~~~~~~-----------------------~~~~~~~~~~~~~--   66 (180)
                      .|||+||++++|.+.++.+...|++       |+.++++.++                       +.+++...+.+..  
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4789999999999988887777875       7777776543                       2222222222221  


Q ss_pred             CCCccEEEeCCChh-----------h---------------HHHHHHhhc--cCCEEEEEecccc
Q 041355           67 PQGIDIYFENVGGK-----------M---------------LDAVLLNMR--LRGRIAVSSIISQ  103 (180)
Q Consensus        67 ~~~~d~~~d~~g~~-----------~---------------~~~~~~~l~--~~G~~v~~~~~~~  103 (180)
                      .|++|+++.+.|..           .               ...+++.++  .+|+++.+++..+
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            24799999988741           0               133455553  4689999877654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.39  E-value=0.00072  Score=40.54  Aligned_cols=81  Identities=10%  Similarity=0.000  Sum_probs=58.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh--------Hc-C---CCccEEEeCCChhhHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR--------WF-P---QGIDIYFENVGGKMLD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~--------~~-~---~~~d~~~d~~g~~~~~   83 (180)
                      .|.+|||.| .|.+|..-++.+...|++|++++.....   +......+        .. .   .++++++-|.+.+.++
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~---~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIP---QFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVN   86 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCH---HHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCCh---HHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHH
Confidence            478999999 8999999999999999999888775432   11111111        01 1   1578999998877554


Q ss_pred             -HHHHhhccCCEEEEEec
Q 041355           84 -AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 -~~~~~l~~~G~~v~~~~  100 (180)
                       ......++.|.++++..
T Consensus        87 ~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          87 QRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             HHHHHHHHHTTCEEEETT
T ss_pred             HHHHHHHHHcCCEEEeCC
Confidence             55577889999998854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0002  Score=49.18  Aligned_cols=38  Identities=13%  Similarity=0.067  Sum_probs=35.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|+.++|+||++++|.+.++-+...|++|+.++++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            68999999999999999999999999999999998765

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=6.5e-05  Score=52.93  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH-HH---------------hHcCCCc
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA-LK---------------RWFPQGI   70 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~-~~---------------~~~~~~~   70 (180)
                      .+.+..++++|++||=.| +| .|..++.+|+..|++|+++..+++.  .+.... +.               ...++.|
T Consensus        53 ~~~~~l~l~~G~~VLDiG-CG-~G~~a~~~a~~~g~~v~git~s~~Q--~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVG-CG-WGATMMRAVEKYDVNVVGLTLSKNQ--ANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHTTTTCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHcCCCCCCEEEEec-Cc-chHHHHHHHhcCCcceEEEeccHHH--HHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            455778899999999998 44 6788999999999999999998654  001100 00               1113456


Q ss_pred             cEEEe-----CCChh----hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFE-----NVGGK----MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d-----~~g~~----~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |.++.     .++..    .+..+.++|+|+|+++.-..
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence            66532     33322    45667789999999976443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.31  E-value=2.8e-05  Score=52.55  Aligned_cols=88  Identities=11%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHH-HHHHh----------------H-cCCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLD-AALKR----------------W-FPQG   69 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~-~~~~~----------------~-~~~~   69 (180)
                      +.+...+++|++||..|  ++.|+.++-+++..|.+|+++...++-  .+.. +.+.+                . ..+.
T Consensus        70 ml~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l--~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPEL--VEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHH--HHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhccCccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHH--HHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            34677899999999998  346888889999888889988886542  0000 01110                0 0126


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      ||.|+-+.+-+ .-...+..|+++|+++..-
T Consensus       146 fD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEeecccccCCHHHHHhcCCCCEEEEEE
Confidence            89988776655 3456778999999998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00035  Score=44.72  Aligned_cols=92  Identities=18%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------CcchHHHHHHhHcCCCccEE
Q 041355            4 VGNLIILVCSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------EEPDLDAALKRWFPQGIDIY   73 (180)
Q Consensus         4 a~~~l~~~~~~-~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~   73 (180)
                      ++.++.+..++ =.|++++|.| .|-+|.-..+.+|.+|++|+++...+-+         ......+.     -...|++
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a-----~~~adiv   83 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEA-----CQEGNIF   83 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHH-----TTTCSEE
T ss_pred             HHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhh-----hhhccEE
Confidence            45566665554 4899999999 9999999999999999999998886433         00111111     1246899


Q ss_pred             EeCCChh--hHHHHHHhhccCCEEEEEecc
Q 041355           74 FENVGGK--MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        74 ~d~~g~~--~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +-|.|+.  .-..-+..++++.-+++.|..
T Consensus        84 vtaTGn~~vI~~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          84 VTTTGCIDIILGRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             EECSSCSCSBCHHHHTTCCTTEEEEECSSS
T ss_pred             EecCCCccchhHHHHHhccCCeEEEEeccc
Confidence            9999975  334566788888777776643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.00013  Score=51.49  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH-H---------------HhHcCCC
Q 041355            6 NLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA-L---------------KRWFPQG   69 (180)
Q Consensus         6 ~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~-~---------------~~~~~~~   69 (180)
                      ..+.+..++++|++||=.| || .|-.+..+|+..|++|++++.+++.  .+.... +               ....++.
T Consensus        51 ~~~~~~l~l~~G~~VLDiG-CG-~G~~~~~~a~~~g~~v~git~s~~q--~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          51 KLALDKLNLEPGMTLLDIG-CG-WGSTMRHAVAEYDVNVIGLTLSENQ--YAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHhcCCCCCCEEEEec-Cc-chHHHHHHHHhcCcceeeccchHHH--HHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            3455778899999999998 55 4556788999999999999988764  000000 0               0122347


Q ss_pred             ccEEEe-----CCCh-----------hhHHHHHHhhccCCEEEEEec
Q 041355           70 IDIYFE-----NVGG-----------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        70 ~d~~~d-----~~g~-----------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ||.|+.     -++.           ..+..+.++|+|+|+++.-..
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            887753     2222           146677889999999986443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.8e-05  Score=53.76  Aligned_cols=90  Identities=17%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC---CcchHHHH---------------------
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK---EEPDLDAA---------------------   61 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~---~~~~~~~~---------------------   61 (180)
                      +....+++||++||=.| +| .|.+++.+|+..|.  +|+++..+++.   ..+++...                     
T Consensus        90 Il~~l~i~pG~rVLE~G-tG-sG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~  167 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAG-SG-SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  167 (324)
T ss_dssp             HHHHHTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHhCCCCCCEEEEec-cc-ccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence            44678899999999888 44 49999999998875  89999887654   01111110                     


Q ss_pred             -HHh----HcCCCccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           62 -LKR----WFPQGIDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        62 -~~~----~~~~~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                       +..    ...+.||.+|=-+..+  .+..+.++|+|+|+++.+.
T Consensus       168 di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         168 DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             CTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             chhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence             000    0012467665333333  7888999999999999874

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.28  E-value=0.00038  Score=48.15  Aligned_cols=58  Identities=9%  Similarity=0.101  Sum_probs=43.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      +|||+||+|-+|..++..++..|.+|+++++++-.  +...+.+.+...   ++|+++.|.+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~---~~d~vih~a~~   62 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEK---KPNVVINCAAH   62 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHH---CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHc---CCCEEEeeccc
Confidence            58999999999999999999999999999887543  222333333322   67999998864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.25  E-value=0.00093  Score=42.66  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChh
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      -.+.+|+|.| +|.+|...++.+...|+ ++.++.|+.++             .-.++.+.+.     .+|++|.|++.+
T Consensus        22 l~~~~ilviG-aG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~-----~~Divi~atss~   95 (159)
T d1gpja2          22 LHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA-----RSDVVVSATAAP   95 (159)
T ss_dssp             CTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH-----TCSEEEECCSSS
T ss_pred             cccCeEEEEC-CCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhc-----cCCEEEEecCCC
Confidence            4678899999 69999999999999999 67777776544             1112222222     489999999865

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.21  E-value=0.00027  Score=48.85  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=32.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ...||+||++++|.+.++.+...|++|+.++++.+.
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            357999999999999999999999999999988653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00012  Score=51.40  Aligned_cols=89  Identities=20%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH-H---------------HhHcCCCc
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA-L---------------KRWFPQGI   70 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~-~---------------~~~~~~~~   70 (180)
                      .+.+..++++|++||=.| || .|..+..+++..|++|++++.+++.  .++... +               -...++.|
T Consensus        43 ~~~~~l~l~~g~~VLDiG-CG-~G~~a~~~a~~~g~~v~gi~ls~~q--~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIG-CG-WGTTMRRAVERFDVNVIGLTLSKNQ--HARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHHTTSCCCTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHcCCCCCCEEEEec-CC-chHHHHHHHHhCceeEEEecchHHH--HHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            345667899999999999 55 3445677889999999999998664  000000 0               01123467


Q ss_pred             cEEEe-----CCChh----hHHHHHHhhccCCEEEEEe
Q 041355           71 DIYFE-----NVGGK----MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~d-----~~g~~----~~~~~~~~l~~~G~~v~~~   99 (180)
                      |.++-     .++..    .+..+.+.|+|+|+++.-.
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            87743     23322    4667778999999997643

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.19  E-value=0.00092  Score=44.25  Aligned_cols=79  Identities=22%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------CcchHHHHHHhHcCCCccEEEeCCCh-h-h----H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------EEPDLDAALKRWFPQGIDIYFENVGG-K-M----L   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~d~~g~-~-~----~   82 (180)
                      .|.+|.|+| .|.+|....++++.+|++|++.++....       ...++.+.+.+     .|+++-++.. + +    -
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~-----sDii~~~~plt~~T~~li~  115 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQ-----ADVISLHVPDVPANVHMIN  115 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHH-----CSEEEECSCCCGGGTTCBS
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccccceeeeccccccccc-----cccccccCCcccccccccc
Confidence            478999999 9999999999999999999998776443       11233333332     5888777642 2 1    1


Q ss_pred             HHHHHhhccCCEEEEEec
Q 041355           83 DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~  100 (180)
                      ...++.++++..+++++-
T Consensus       116 ~~~l~~mk~~a~lIN~sR  133 (197)
T d1j4aa1         116 DESIAKMKQDVVIVNVSR  133 (197)
T ss_dssp             HHHHHHSCTTEEEEECSC
T ss_pred             HHHHhhhCCccEEEecCc
Confidence            456788888888888754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.17  E-value=0.00054  Score=49.16  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=34.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++|||+||+|-+|..+++.+...|.+|+++++....
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            57899999999999999999999999999999987653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.17  E-value=0.00014  Score=49.36  Aligned_cols=87  Identities=14%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH-HH-------------h-Hc-CCCcc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA-LK-------------R-WF-PQGID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~-~~-------------~-~~-~~~~d   71 (180)
                      +.+...+++|++||-.| +| .|..+..+++. +.+|+++...++.  .+.... ..             . .. .+.||
T Consensus        62 ml~~L~l~~g~~VLdIG-~G-sGy~ta~La~l-~~~V~aiE~~~~~--~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIG-TG-IGYYTALIAEI-VDKVVSVEINEKM--YNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHH--HHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhhhcccceEEEec-CC-CCHHHHHHHHH-hcccccccccHHH--HHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            34677899999999998 44 57777777775 5699998876543  000000 00             0 00 12589


Q ss_pred             EEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           72 IYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      .|+-+.+-+ .....+..|++||+++...
T Consensus       137 ~Iiv~~a~~~ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         137 RVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             HHHhhcchhhhhHHHHHhcCCCCEEEEEE
Confidence            888665544 4566778999999998864

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00093  Score=45.16  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCCCCcchHHHHHHh---------------------Hc-CC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEKEEPDLDAALKR---------------------WF-PQ   68 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~~~~~~~~~~~~---------------------~~-~~   68 (180)
                      .+++|++||-.| + +.|..+..+++..|  .+|+++...++.- +...+.+++                     .. .+
T Consensus        73 ~l~~g~~VLdiG-~-GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~  149 (224)
T d1i1na_          73 QLHEGAKALDVG-S-GSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA  149 (224)
T ss_dssp             TSCTTCEEEEET-C-TTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred             ccCCCCeEEEec-C-CCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeecccccchhh
Confidence            689999999998 3 45888888998876  3899998875430 000011110                     01 12


Q ss_pred             CccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           69 GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        69 ~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                      .||.|+.+..-+ .....++.|+|+|+++..-
T Consensus       150 ~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         150 PYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence            689988776644 5567889999999998853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.13  E-value=0.0013  Score=39.75  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEe
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      +.+.....++++++|.| +|.+|+=+.+.++.+|.+|..+.+.+..   .+++..+.+.+.... ++++..+
T Consensus        13 ~~~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~   83 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISG   83 (121)
T ss_dssp             HHHHCCSCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESS
T ss_pred             HHHHHhhCCCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcC
Confidence            44556677899999999 8999999999999999999998887654   344455555544332 5555543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.10  E-value=0.0014  Score=42.79  Aligned_cols=79  Identities=22%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----CcchHHHHHHhHcCCCccEEEeCCC-hh-h----HHHH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPDLDAALKRWFPQGIDIYFENVG-GK-M----LDAV   85 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~d~~g-~~-~----~~~~   85 (180)
                      .|.+|.|.| .|.+|....++++.+|++|++.++....    ...++.+.++     ..|+++-++. ++ +    -...
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~-----~sDiv~~~~pl~~~t~~li~~~~  114 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALR-----EARAAVCALPLNKHTRGLVKYQH  114 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHT-----TCSEEEECCCCSTTTTTCBCHHH
T ss_pred             cCceEEEec-cccccccceeeeeccccccccccccccccceeeeechhhhhh-----ccchhhcccccccccccccccce
Confidence            478999999 9999999999999999999999887655    1112222222     3678877664 22 2    1566


Q ss_pred             HHhhccCCEEEEEec
Q 041355           86 LLNMRLRGRIAVSSI  100 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~  100 (180)
                      ++.++++..+++++-
T Consensus       115 l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         115 LALMAEDAVFVNVGR  129 (181)
T ss_dssp             HTTSCTTCEEEECSC
T ss_pred             eeeccccceEEeccc
Confidence            788899999998864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00081  Score=45.51  Aligned_cols=63  Identities=24%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC-C----------cchH--HHHHHhHcCCCccEEEeCCCh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK-E----------EPDL--DAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~-~----------~~~~--~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      .+.+|||+||+|-+|...++.+...|.  +|+++.|++.. .          ..|+  .+.+.+.. .++|+++.|+|.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~-~~~d~vi~~~~~   90 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF-QGHDVGFCCLGT   90 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG-SSCSEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccc-cccccccccccc
Confidence            457899999999999999998877775  89999987654 0          0111  11222222 268999999874

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.05  E-value=0.0014  Score=45.85  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCc--hHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASG--AVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g--~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+++||+||+|  ++|.+.++.+...|++|+.+.++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            688999999876  89999999999999999988764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.05  E-value=0.00098  Score=44.29  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=43.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC-------CcchHHHHHHhHcCCCccEEEeCCCh
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK-------EEPDLDAALKRWFPQGIDIYFENVGG   79 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~d~~g~   79 (180)
                      ++|||+||+|-+|..+++.+...|.  +|++..+++..       ...++. .+.+...+.+|.++.|+|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~-~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLA-ELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHH-HHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchh-hhhhccccchheeeeeeee
Confidence            6899999999999999988877776  67777766543       122332 3334444578999999874

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=97.01  E-value=0.00084  Score=46.72  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=29.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .++|+||++++|.+.++.+...|++|+.++++++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            4689999999999999999999999998877643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.01  E-value=0.00089  Score=47.60  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +++||+||+|-+|..++..+...|.+|+++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5789999999999999999988999999999853

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00075  Score=45.75  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +++||+||++++|.+.++.+...|++|+.++++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            578999999999999999999999999999988775

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.96  E-value=0.0016  Score=42.07  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------------CcchHHHHHHhHcCCCccE
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------------EEPDLDAALKRWFPQGIDI   72 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~d~   72 (180)
                      ++|.|.| +|.+|++....+...|.+|...++++++                         ...+..+.+     .+.|+
T Consensus         2 k~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~aD~   75 (184)
T d1bg6a2           2 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDADV   75 (184)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCSE
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCCCE
Confidence            6899999 8999999999999999999999987543                         001111112     24799


Q ss_pred             EEeCCChhhHHHHHHhhc
Q 041355           73 YFENVGGKMLDAVLLNMR   90 (180)
Q Consensus        73 ~~d~~g~~~~~~~~~~l~   90 (180)
                      ++-|+........+..++
T Consensus        76 iii~v~~~~~~~~~~~i~   93 (184)
T d1bg6a2          76 ILIVVPAIHHASIAANIA   93 (184)
T ss_dssp             EEECSCGGGHHHHHHHHG
T ss_pred             EEEEEchhHHHHHHHHhh
Confidence            999998775555554444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.93  E-value=0.00082  Score=48.14  Aligned_cols=41  Identities=29%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .-+++|++|||+||+|=+|...++.+...|++|++++++.+
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~   46 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            44688999999999999999998888888999999988643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.90  E-value=0.0027  Score=42.00  Aligned_cols=79  Identities=19%  Similarity=0.119  Sum_probs=56.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCCC-hh-h----HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENVG-GK-M----LD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~g-~~-~----~~   83 (180)
                      .|.+|.|.| .|.+|....++++.+|++|++.++....      .-.++.+-+..     .|++.-++. .+ +    -.
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~-----~D~v~~~~plt~~T~~li~~  117 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQ-----SDVIDLHVPGIEQNTHIINE  117 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHH-----CSEEEECCCCCGGGTTSBCH
T ss_pred             cceeeeeee-cccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHHh-----cccceeeecccccccccccH
Confidence            467999999 9999999999999999999999887654      11233333333     477766553 22 1    24


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      ..+..++++..+++++-
T Consensus       118 ~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         118 AAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             HHHHHSCTTEEEEECSC
T ss_pred             HHhhccCCceEEEeccc
Confidence            56688899998888864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.0018  Score=43.61  Aligned_cols=85  Identities=15%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHc---C----CEEEEEeCCCCC---CcchHHHH-HH-----hH-------c---
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLA---G----CYVVGSAGSKEK---EEPDLDAA-LK-----RW-------F---   66 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~---g----~~vi~~~~~~~~---~~~~~~~~-~~-----~~-------~---   66 (180)
                      .+++|++||..|.  +.|+.+..+++..   |    .+|+++...++.   ....+... ..     ..       .   
T Consensus        77 ~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc
Confidence            6899999999983  3466666666654   3    379988876543   11111110 00     00       0   


Q ss_pred             --CCCccEEEeCCChh-hHHHHHHhhccCCEEEEEe
Q 041355           67 --PQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        67 --~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~   99 (180)
                        .+.||.|+-+.+-+ .-...++.|+++|+++..-
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence              12689887766654 4466778999999998753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0008  Score=38.85  Aligned_cols=37  Identities=16%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|++|+|+| .|..|+.+++++...|++|++.+.....
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            467899999 7999999999999999999999886653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.88  E-value=0.0019  Score=41.10  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=65.9

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHc-----------CCCccE
Q 041355            5 GNLIILVCS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWF-----------PQGIDI   72 (180)
Q Consensus         5 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~   72 (180)
                      +.++.+... +=.|++++|.| -|-+|.-..+-+|.+|++|+++...+-+       .++..-           -...|+
T Consensus        10 ~d~i~r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~-------alqA~mdGf~v~~~~~a~~~aDi   81 (163)
T d1v8ba1          10 PDGLMRATDFLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPIC-------AIQAVMEGFNVVTLDEIVDKGDF   81 (163)
T ss_dssp             HHHHHHHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHH-------HHHHHTTTCEECCHHHHTTTCSE
T ss_pred             HHHHHHHhCceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchh-------hHHHHhcCCccCchhHccccCcE
Confidence            344555555 45899999999 9999999999999999999998876433       111111           124799


Q ss_pred             EEeCCChh--hHHHHHHhhccCCEEEEEeccc
Q 041355           73 YFENVGGK--MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        73 ~~d~~g~~--~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      ++-+.|+.  .-..-+..++++.-+.+.|...
T Consensus        82 ~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          82 FITCTGNVDVIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             EEECCSSSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             EEEcCCCCccccHHHHHHhhCCeEEEeccccc
Confidence            99999976  2455678889998888876543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00021  Score=48.93  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------C--c--chHH-HHHHhHc-CC
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------E--E--PDLD-AALKRWF-PQ   68 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~--~--~~~~-~~~~~~~-~~   68 (180)
                      +..+....++++|++||=.| || .|..+..+++..|++|++++.++..          .  .  -++. ....+.. ++
T Consensus        22 ~~~l~~~~~l~pg~~VLDiG-CG-~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLG-SG-SGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEET-CT-TCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHHcCCCCCCEEEEEc-CC-CCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            45577888999999999888 44 4566778888889999999987653          0  0  0000 0011111 23


Q ss_pred             CccEEEeCCC-----h--hhHHHHHHhhccCCEEEEEe
Q 041355           69 GIDIYFENVG-----G--KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        69 ~~d~~~d~~g-----~--~~~~~~~~~l~~~G~~v~~~   99 (180)
                      .||.++-.-.     +  ..+..+.+.|+|+|+++...
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            7888864321     1  25667778999999997754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.0007  Score=46.92  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC---CcchHHHH--------------HHhH-c-
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK---EEPDLDAA--------------LKRW-F-   66 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~---~~~~~~~~--------------~~~~-~-   66 (180)
                      +.....++||++||=.| + +.|.+...+|+..|-  +|++++.+++.   ..+++...              +.+. . 
T Consensus        88 Ii~~l~i~PG~~VLE~G-~-GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAG-A-GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHTTCCTTCEEEEEC-C-TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHhCCCCCCEEEecC-c-CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            44778899999999888 3 458889999998864  89998887654   00111100              0110 1 


Q ss_pred             CCCccEEEeCCChh--hHHHHHHhhccCCEEEEEe
Q 041355           67 PQGIDIYFENVGGK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        67 ~~~~d~~~d~~g~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      .+.||.+|--+..+  .+..+.++|+|+|+++.+.
T Consensus       166 ~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         166 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            12688765445544  7889999999999998873

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.87  E-value=0.0024  Score=41.99  Aligned_cols=79  Identities=23%  Similarity=0.146  Sum_probs=55.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCC---------cchHHHHHHhHcCCCccEEEeCCC-hh-h---
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKE---------EPDLDAALKRWFPQGIDIYFENVG-GK-M---   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---   81 (180)
                      .|.++.|.| .|.+|....+.++.+|++|++.++.....         ..++.+-++.     .|++.-++. .+ +   
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~-----sD~i~~~~plt~~T~~l  121 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFH-----SDCVTLHCGLNEHNHHL  121 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHH-----CSEEEECCCCCTTCTTS
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCcccccchhhhccccccchhhcccc-----CCEEEEeecccccchhh
Confidence            578999999 99999999999999999999988765431         1123333332     477766554 22 1   


Q ss_pred             -HHHHHHhhccCCEEEEEec
Q 041355           82 -LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 -~~~~~~~l~~~G~~v~~~~  100 (180)
                       -...+..++++..+++++-
T Consensus       122 i~~~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         122 INDFTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             BSHHHHTTSCTTEEEEECSC
T ss_pred             hhHHHHhccCCCCeEEecCC
Confidence             1355678888888888754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0069  Score=39.24  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      .+.+|+|.| +|+.+.+++..+..+|+ +++.+.|++++
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          17 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            678999999 78999988888888898 78888887664

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0042  Score=37.96  Aligned_cols=73  Identities=12%  Similarity=0.016  Sum_probs=54.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEEE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~~   98 (180)
                      +|.|+|++|-+|++..+++...+.++++....+..  +.         -..+|+++|++.-+.+...++.+...+.-+.+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--~~---------~~~~DVvIDFS~p~~~~~~l~~~~~~~~p~Vi   70 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--EE---------LDSPDVVIDFSSPEALPKTVDLCKKYRAGLVL   70 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--EE---------CSCCSEEEECSCGGGHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--HH---------hccCCEEEEecCHHHHHHHHHHHHhcCCCEEE
Confidence            58999999999999999999999887765443221  11         12579999999988777777776666666677


Q ss_pred             eccc
Q 041355           99 SIIS  102 (180)
Q Consensus        99 ~~~~  102 (180)
                      |+.+
T Consensus        71 GTTG   74 (128)
T d1vm6a3          71 GTTA   74 (128)
T ss_dssp             CCCS
T ss_pred             EcCC
Confidence            6654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=0.00059  Score=46.26  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--Cc-----------chHH-HHHHh--HcCC
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EE-----------PDLD-AALKR--WFPQ   68 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~-----------~~~~-~~~~~--~~~~   68 (180)
                      +..+.....+++|++||=.|+ | .|..+..+++. +.+|++++.++..  ..           -.+. ....+  ..++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGc-G-tG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGA-G-AGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESC-T-TSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHHhCCCCCCEEEEeCC-c-CcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            455778899999999999983 3 57777777774 6799999988643  00           0000 00011  0123


Q ss_pred             CccEEEeCCCh-------hhHHHHHHhhccCCEEEEEe
Q 041355           69 GIDIYFENVGG-------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        69 ~~d~~~d~~g~-------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      .||+|+.+-.-       ..+..+.+.|+|+|+++...
T Consensus        82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            68988764332       15778889999999988754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.81  E-value=0.0025  Score=38.31  Aligned_cols=64  Identities=14%  Similarity=0.017  Sum_probs=47.9

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++..++|+|.| +|.+|.=+.+.+..+|.+|..+.+.+.-   -+++..+.+++.... ++++.+++
T Consensus        17 ~~l~~p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~   84 (117)
T d1onfa2          17 FNIKESKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFA   84 (117)
T ss_dssp             TTCCCCSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSC
T ss_pred             hccCCCCEEEEEC-CchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECC
Confidence            3556678999999 8999999999999999999999987654   345666666654433 67766653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.0072  Score=37.23  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=54.4

Q ss_pred             EEEEecCCchHHHHHHHHHHH-cCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEEEE
Q 041355           19 YVYVSAASGAVGQLVGQFAKL-AGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~-~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~v~   97 (180)
                      +|.|.|++|=+|+..++.... -++++++.....+.  .      ......++|+++|++--+.....++.+...|.-+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~--~------~~~~~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~V   72 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP--L------SLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAV   72 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC--T------HHHHTTTCSEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--h------hhhccccCCEEEEcccHHHHHHHHHHHHhcCCCEE
Confidence            589999999999998888765 46787776654321  1      11122468999999987777777777777777777


Q ss_pred             Eeccc
Q 041355           98 SSIIS  102 (180)
Q Consensus        98 ~~~~~  102 (180)
                      +|..+
T Consensus        73 iGTTG   77 (135)
T d1yl7a1          73 VGTTG   77 (135)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            77654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0025  Score=37.99  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             CCCC-CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           14 PKKG-EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        14 ~~~g-~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +.++ .+|.|.| +|..|.+.++-|+.+|+++++.+.+++.
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            3444 5699999 8999999999999999999999987664

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.78  E-value=0.0029  Score=40.01  Aligned_cols=137  Identities=12%  Similarity=0.053  Sum_probs=73.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC---EEEEEeCCCCC------CcchH-HHHHHhHcCCCccEEEeCCChh-hHHHH
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC---YVVGSAGSKEK------EEPDL-DAALKRWFPQGIDIYFENVGGK-MLDAV   85 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~---~vi~~~~~~~~------~~~~~-~~~~~~~~~~~~d~~~d~~g~~-~~~~~   85 (180)
                      |-+|.|.||+|-+|.-.++++..+..   ++...+++...      ..+.. .....+....+.|++|-|.+.. .....
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            45799999999999999999987743   45555544333      00000 0000011112688999999877 44444


Q ss_pred             HHhhccCCEEEEEeccccccCCCCccccchHHHhh----cCcEEEeeeccchHHHHHHHHHHHHHHHHCCCccceeeeec
Q 041355           86 LLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG----KRIRLEGFLAGDYYHLYLKFLELVIPAIREGKMVYVEDIAE  161 (180)
Q Consensus        86 ~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  161 (180)
                      ......+-+++..+.......   ..+........    +.-++......  .   ...+..+..+.++|.+++....+|
T Consensus        81 ~~~~~~~~~VIDlSsdfR~~~---~~~~~~pe~n~~~~~~~~~iIAnPgC--~---tt~i~~l~PL~~~~lik~~~~~~~  152 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFRQNP---DVPLVVPEVNAHALDAHNGIIACPNA--A---WNSVQIAETLHERGLVRPTAELKF  152 (154)
T ss_dssp             HHHHHTTCEEEECSSTTTTCT---TSCBCCHHHHGGGGGGCCSEEECCCT--H---HHHHHHHHHHHHTTCCSCCSSCCS
T ss_pred             hhhccccceehhcChhhhccC---CcccccchhhHHHhcCcCceEECCCC--H---HHHHHHHHHHHHhcCCCccceeee
Confidence            456677778888765432211   11111111211    11112211111  1   122334678999999999765544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.77  E-value=0.0085  Score=36.19  Aligned_cols=64  Identities=17%  Similarity=0.058  Sum_probs=46.8

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----CcchHHHHHHhHcCC-CccEEEeC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..-..+++|+|.| +|.+|+=+++.+..+|.+|..+.+.+.-    -+++..+.+.+.... ++++.+++
T Consensus        25 ~~~~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~   93 (123)
T d1nhpa2          25 TVDPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGE   93 (123)
T ss_dssp             HTCTTCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESC
T ss_pred             hhccCCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCc
Confidence            3345678999999 8999999999999999999998887653    244555555554433 67766654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.76  E-value=0.0017  Score=45.86  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      +|||+||+|-+|...++.+...|.+|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6999999999999999988888999999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0035  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.119  Sum_probs=28.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +|||+||+|-+|...+..+...|.+|+++++.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            59999999999999999998889999998753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.72  E-value=0.0012  Score=44.31  Aligned_cols=89  Identities=13%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------Ccc--hHH-HHHHh--HcCCCcc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------EEP--DLD-AALKR--WFPQGID   71 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------~~~--~~~-~~~~~--~~~~~~d   71 (180)
                      +.+..+++++++||=.| +| .|..+..+++. |.+|++++.+++.           ..+  ++. ....+  ...+.||
T Consensus         7 ll~~~~l~~~~rVLDiG-cG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVA-TG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHTCCSCCEEEEET-CT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHhcCCCCcCEEEEec-cc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            44778999999999998 44 67777777754 6799999887542           000  000 00011  1123688


Q ss_pred             EEEeCCC-----hh--hHHHHHHhhccCCEEEEEe
Q 041355           72 IYFENVG-----GK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~d~~g-----~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+-.-.     ..  .+..+.++|+|+|+++...
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8875432     11  5778889999999998764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0015  Score=47.03  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +.+||+||+|-+|..++..+...|.+|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5688999999999999888888899999999853

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.69  E-value=0.0065  Score=39.30  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ....+++|.+||..| || .|..++-+|+ .|++|++++.++.
T Consensus        14 ~~l~~~~~~rvLd~G-CG-~G~~a~~la~-~G~~V~gvD~S~~   53 (201)
T d1pjza_          14 SSLNVVPGARVLVPL-CG-KSQDMSWLSG-QGYHVVGAELSEA   53 (201)
T ss_dssp             HHHCCCTTCEEEETT-TC-CSHHHHHHHH-HCCEEEEEEECHH
T ss_pred             HHcCCCCCCEEEEec-Cc-CCHHHHHHHH-cCCceEeecccHH
Confidence            445789999999999 44 5778888886 5999999998754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.69  E-value=0.0022  Score=44.60  Aligned_cols=91  Identities=10%  Similarity=0.074  Sum_probs=58.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHH-----H-------HHHhH-cC-CCc
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLD-----A-------ALKRW-FP-QGI   70 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~-----~-------~~~~~-~~-~~~   70 (180)
                      +.....+++|.+||=.| || .|..+..+++..|++|++++.++..   ......     .       ...+. .+ +.|
T Consensus        59 l~~~~~l~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sf  136 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLG-AG-YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSY  136 (282)
T ss_dssp             HHHTTCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHhcCCCCCCEEEEeC-CC-CcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccccccc
Confidence            33455789999999888 44 5777888888889999999987653   000000     0       00111 12 368


Q ss_pred             cEEEeCCCh-----h--hHHHHHHhhccCCEEEEEec
Q 041355           71 DIYFENVGG-----K--MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        71 d~~~d~~g~-----~--~~~~~~~~l~~~G~~v~~~~  100 (180)
                      |+|+-.-.-     .  .+..+.++|+|+|+++....
T Consensus       137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            988653221     1  56778899999999887644

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.68  E-value=0.0025  Score=44.35  Aligned_cols=37  Identities=11%  Similarity=0.029  Sum_probs=32.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      -.+|||+||+|-+|...+..+...|.+|+++.|+...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            3569999999999999999888899999999887654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.63  E-value=0.0073  Score=36.43  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----CcchHHHHHHhHcCC-CccEEEeC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      .++++++++|.| +|.+|.=++..++.+|.+|..+.+++.-    -+++..+.+++.... |+++.+++
T Consensus        26 ~~~~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~   93 (121)
T d1d7ya2          26 GLRPQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER   93 (121)
T ss_dssp             HCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC
T ss_pred             hhhcCCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCC
Confidence            467789999999 8999999999999999999999988764    244555556655433 77777654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.62  E-value=0.0045  Score=37.25  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=44.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++++|.| +|.+|+=+.+.++.+|.+|..+.+.+.-   -+++..+.+++.... ++.+..++
T Consensus        21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~   84 (119)
T d3lada2          21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGA   84 (119)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred             CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCc
Confidence            347899999 8999999999999999999988887654   445566666655432 56666543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.62  E-value=0.004  Score=42.95  Aligned_cols=36  Identities=14%  Similarity=0.106  Sum_probs=32.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++|||+||+|-+|..++..+...|.+|+++++....
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            579999999999999999998889999999987654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.61  E-value=0.0017  Score=43.38  Aligned_cols=35  Identities=31%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~   52 (180)
                      .+|||+||+|.+|..+++.+...|.  .|+...++++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~   40 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ   40 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH
Confidence            5899999999999999998887775  5666666644

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0039  Score=40.63  Aligned_cols=79  Identities=27%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------CcchHHHHHHhHcCCCccEEEeCCC-hh-h---H
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEPDLDAALKRWFPQGIDIYFENVG-GK-M---L   82 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---~   82 (180)
                      .|.++.|.| .|.+|....++++.+|.+|++.++....        ...++.+.+.+     .|++.-++. ++ +   +
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~-----sDiv~~~~Plt~~T~~li  116 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLAR-----ADFISVHLPKTPETAGLI  116 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHH-----CSEEEECCCCSTTTTTCB
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhh-----CCEEEEcCCCCchhhhhh
Confidence            477899999 9999999999999999999998876543        11223223332     578877654 22 1   1


Q ss_pred             -HHHHHhhccCCEEEEEec
Q 041355           83 -DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 -~~~~~~l~~~G~~v~~~~  100 (180)
                       ...+..++++..+++++-
T Consensus       117 n~~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         117 DKEALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             CHHHHTTSCTTEEEEECSC
T ss_pred             hHHHHhhhCCCceEEEecc
Confidence             456678888888888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.0014  Score=45.13  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=30.3

Q ss_pred             CCCEEEEecCCchHHHHHH-HHHHH--cCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVG-QFAKL--AGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~i-qlak~--~g~~vi~~~~~~~~   53 (180)
                      .|+.++|+||++++|.+++ ++|+.  .|++|+.+++++++
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~   45 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM   45 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH
Confidence            4677899999999998865 46664  58999999987653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0032  Score=37.75  Aligned_cols=59  Identities=17%  Similarity=0.106  Sum_probs=43.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      .++++|.| +|.+|+=+++.++.+|.+|..+.+.+.-   -++++.+.+.+.... ++++.+++
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~   83 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNA   83 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSC
T ss_pred             CCEEEEEC-CChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCC
Confidence            36899999 8999999999999999999988887654   344555555554433 56666543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0093  Score=37.63  Aligned_cols=76  Identities=16%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---------C--------cchHHHHHHhHcCCCccEEEeCCChhh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---------E--------EPDLDAALKRWFPQGIDIYFENVGGKM   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---------~--------~~~~~~~~~~~~~~~~d~~~d~~g~~~   81 (180)
                      +|+|.| +|.+|.+....+...|.+|..+++++++         +        ..+..+.+     +.+|++|-|+-...
T Consensus         2 kI~IiG-aG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D~iii~vka~~   75 (167)
T d1ks9a2           2 KITVLG-CGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-----ATSDLLLVTLKAWQ   75 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-----HTCSEEEECSCGGG
T ss_pred             EEEEEC-cCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhh-----cccceEEEeecccc
Confidence            589999 6999998777777789999999998876         0        00111112     25899999998765


Q ss_pred             HHHHHH----hhccCCEEEEEec
Q 041355           82 LDAVLL----NMRLRGRIAVSSI  100 (180)
Q Consensus        82 ~~~~~~----~l~~~G~~v~~~~  100 (180)
                      ....++    .+.++..++.+.+
T Consensus        76 ~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          76 VSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEECS
T ss_pred             hHHHHHhhccccCcccEEeeccC
Confidence            544444    4455666666644

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.012  Score=36.69  Aligned_cols=77  Identities=22%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             EEEEecCCchHHHHHHHH-HHHcC---CEEEEEeCCCCC-------Cc----chH-H-HHHHhHcCCCccEEEeCCChhh
Q 041355           19 YVYVSAASGAVGQLVGQF-AKLAG---CYVVGSAGSKEK-------EE----PDL-D-AALKRWFPQGIDIYFENVGGKM   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iql-ak~~g---~~vi~~~~~~~~-------~~----~~~-~-~~~~~~~~~~~d~~~d~~g~~~   81 (180)
                      +|.|.||+|-||+-.+|+ +.+..   .+++...++...       ..    .+. . ..+     .++|++|-|++.+.
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~-----~~~DivF~a~~~~~   77 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-----KALDIIVTCQGGDY   77 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH-----HTCSEEEECSCHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh-----hcCcEEEEecCchH
Confidence            689999999999999984 54432   367766665544       00    000 0 011     16899999999886


Q ss_pred             HHHHHHhhccCC---EEEEEec
Q 041355           82 LDAVLLNMRLRG---RIAVSSI  100 (180)
Q Consensus        82 ~~~~~~~l~~~G---~~v~~~~  100 (180)
                      .......+...|   .++..+.
T Consensus        78 s~~~~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          78 TNEIYPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSS
T ss_pred             HHHhhHHHHhcCCCeecccCCc
Confidence            666666555444   3555433

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0098  Score=38.77  Aligned_cols=79  Identities=18%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCCCccEEEeCCC-hh-h----HH
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQGIDIYFENVG-GK-M----LD   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~d~~g-~~-~----~~   83 (180)
                      .+.+|.|.| .|.+|....++++.+|.+|++.++....      .-.++.+-+++     .|++.-++. .+ +    =.
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~-----sDii~i~~plt~~T~~li~~  116 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNM-----SDVVSLHVPENPSTKNMMGA  116 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHH-----CSEEEECCCSSTTTTTCBCH
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhh-----ccceeecccCCcchhhhccH
Confidence            577999999 9999999999999999999999876554      11233333333     578877654 22 1    25


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      ..++.++++..+++++-
T Consensus       117 ~~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         117 KEISLMKPGSLLINASR  133 (188)
T ss_dssp             HHHHHSCTTEEEEECSC
T ss_pred             HHHhhCCCCCEEEEcCc
Confidence            66788899988888865

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.46  E-value=0.0071  Score=39.60  Aligned_cols=78  Identities=12%  Similarity=0.049  Sum_probs=55.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCC-hh-h---
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVG-GK-M---   81 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g-~~-~---   81 (180)
                      |.++.|+| .|.+|....++++.+|.+|++.++....          ...++.+-+.+     .|++.-++. ++ +   
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~-----sD~v~l~~plt~~T~~l  120 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSV-----SQFFSLNAPSTPETRYF  120 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHH-----CSEEEECCCCCTTTTTC
T ss_pred             ccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhh-----CCeEEecCCCCchHhhe
Confidence            78999999 9999999999999999999998876553          11123333332     578776654 22 1   


Q ss_pred             -HHHHHHhhccCCEEEEEec
Q 041355           82 -LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 -~~~~~~~l~~~G~~v~~~~  100 (180)
                       -...+..++++..+++++-
T Consensus       121 i~~~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         121 FNKATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             BSHHHHTTSCTTEEEEECSC
T ss_pred             ecHHHhhCcCCccEEEecCC
Confidence             1456678888888888854

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.46  E-value=0.011  Score=37.13  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=27.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~   51 (180)
                      ++|.|.|++|++|.-++++.+..  .++|++..-..
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            68999999999999999999876  46777654443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0032  Score=38.10  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=44.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      -++++|.| +|.+|+=+++.+..+|.+|..+.+.+.-   -+++..+.+++.... ++++.+++
T Consensus        23 p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~   85 (122)
T d1v59a2          23 PKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLST   85 (122)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred             CCeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCC
Confidence            36899999 8999999999999999999998887654   344555555554332 66666653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0057  Score=39.65  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=33.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ..+++|+|.| +|+.|+.+...+...|.+|......+.-
T Consensus        41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            4568999999 9999999999999999999999887654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.41  E-value=0.0065  Score=36.29  Aligned_cols=58  Identities=21%  Similarity=0.258  Sum_probs=42.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      .++++|.| +|.+|+=+++.+..+|.+|..+.+.+.-   -+++..+.+.+.... ++++.+.
T Consensus        22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~   83 (117)
T d1ebda2          22 PKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN   83 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             CCeEEEEC-CCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcC
Confidence            47899999 8999999999999999999999887764   334455555443322 5666654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.39  E-value=0.0078  Score=42.77  Aligned_cols=34  Identities=3%  Similarity=0.044  Sum_probs=28.2

Q ss_pred             CCEEEEec--CCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           17 GEYVYVSA--ASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~G--a~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++..||+|  ++.++|.++.+.+-..|++|+.+.++
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~   37 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWP   37 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCc
Confidence            56779999  44699999999999999999987654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.38  E-value=0.009  Score=36.44  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|+|.| .|.+|...++.+...|..|++++.++++
T Consensus         2 ~IvI~G-~G~~G~~la~~L~~~g~~v~vid~d~~~   35 (132)
T d1lssa_           2 YIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDI   35 (132)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCCcceecCChhh
Confidence            588999 7999999999999999999999887653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.37  E-value=0.029  Score=35.35  Aligned_cols=80  Identities=15%  Similarity=0.097  Sum_probs=48.6

Q ss_pred             EEEEecCCchHHH-HHHHHHHHcCC-EEEEEeCCCCC-------------CcchHHHHHHhHcC-CCccEEEeCCChh-h
Q 041355           19 YVYVSAASGAVGQ-LVGQFAKLAGC-YVVGSAGSKEK-------------EEPDLDAALKRWFP-QGIDIYFENVGGK-M   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~-~~iqlak~~g~-~vi~~~~~~~~-------------~~~~~~~~~~~~~~-~~~d~~~d~~g~~-~   81 (180)
                      ++.|.| +|.+|. ..+++++.... +++++++++..             ...+..+.+.+... .++|++|+|+... .
T Consensus         6 rvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           6 KVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            689999 899986 57788887654 88888876543             01112233333322 3799999998754 5


Q ss_pred             HHHHH--HhhccCCEEEEEe
Q 041355           82 LDAVL--LNMRLRGRIAVSS   99 (180)
Q Consensus        82 ~~~~~--~~l~~~G~~v~~~   99 (180)
                      ..+.+  ..++.|-.++...
T Consensus        85 ~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          85 VQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             HHHHHHHHHHCTTCEEEECS
T ss_pred             HHhHHHHHHHHcCCEEEEcc
Confidence            54433  3344444555543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0061  Score=39.15  Aligned_cols=84  Identities=12%  Similarity=0.026  Sum_probs=51.6

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHc-----------CCCccEEEeCCChhhH
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWF-----------PQGIDIYFENVGGKML   82 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~~d~~g~~~~   82 (180)
                      ..++.+|+|.| +|+++.+++..+...+.+|+++.|+.++ .+.+.+.+....           ...+|++++|+....-
T Consensus        15 ~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~-a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~   92 (171)
T d1p77a1          15 LRPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSK-TKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS   92 (171)
T ss_dssp             CCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHH-HHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHH-HHHHHHHHhhccccchhhhccccccccceeeeccccccc
Confidence            35788999999 7888988888777666688888887543 122222222111           1268999999864311


Q ss_pred             H----HHHHhhccCCEEEEEe
Q 041355           83 D----AVLLNMRLRGRIAVSS   99 (180)
Q Consensus        83 ~----~~~~~l~~~G~~v~~~   99 (180)
                      .    .....++++..++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          93 GGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             ----CCCHHHHHHCSCEEESC
T ss_pred             ccccchhhhhhcccceeeeee
Confidence            1    1123456666666553

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.012  Score=39.39  Aligned_cols=89  Identities=16%  Similarity=0.100  Sum_probs=57.3

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------C----------------------cchH-
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------E----------------------EPDL-   58 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~----------------------~~~~-   58 (180)
                      +...+.+|.+||..| ||. |..+..+|+ .|++|++++-++..        .                      .-++ 
T Consensus        39 ~~l~~~~~~rvLd~G-CG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          39 TFLKGKSGLRVFFPL-CGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHHTTCCSCEEEETT-CTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             HhcCCCCCCEEEEeC-CCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            445678899999999 664 787888876 69999999987542        0                      0000 


Q ss_pred             HHHHHh---HcCCCccEEEeCCCh-----h----hHHHHHHhhccCCEEEEEecc
Q 041355           59 DAALKR---WFPQGIDIYFENVGG-----K----MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        59 ~~~~~~---~~~~~~d~~~d~~g~-----~----~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      ...+..   ...+.+|+++++..-     +    .+..+.++|+|+|+++.....
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            000111   112378999986531     1    456777899999998766543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.005  Score=43.87  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=28.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.|||+||+|-+|..++..+...|.+|+++++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            578999999999999888888889999998653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.34  E-value=0.0066  Score=37.26  Aligned_cols=62  Identities=19%  Similarity=0.144  Sum_probs=45.9

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----CcchHHHHHHhHcCC-CccEEEe
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      .++++++++|.| +|.+|+=++..++..|.+|..+.+.+.-    .++...+.+++.... ++++.++
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~   97 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTG   97 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeC
Confidence            456789999999 8999999999999999999998887764    234444455444333 6666654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.0017  Score=45.02  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchH--HHHHHhHcCC-CccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDL--DAALKRWFPQ-GIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~--~~~~~~~~~~-~~d~~~d~~g   78 (180)
                      +|||+||+|-+|..++..+...| +++++++.......++  .+.+.+...+ ++|+++.|++
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g-~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS-EEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC-CEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEecc
Confidence            58999999999999888776666 4555555544311111  1222232223 6899999986

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.32  E-value=0.015  Score=41.50  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------CcchHHHHHHhHcCCCccEEEeCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------EEPDLDAALKRWFPQGIDIYFENVG   78 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------~~~~~~~~~~~~~~~~~d~~~d~~g   78 (180)
                      .+-+|||+||+|-+|..++..+...|.+|+++++....              +-.+. +.+.+.. .++|.++.+++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~-~~~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVM-ENCLKVT-EGVDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSH-HHHHHHH-TTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhH-HHHHHHh-hcCCeEeeccc
Confidence            45689999999999999999999999999998765443              11122 2223322 26899988774

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.24  E-value=0.0046  Score=37.43  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=45.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++++|.| +|-+|+=+++.++.+|.+|..+.+++.-   .+++....+.+.... ++++.+++
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~   87 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKT   87 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSE
T ss_pred             cCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCC
Confidence            457899999 8999999999999999999999888765   345555555554433 66666543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.0047  Score=43.36  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++|||+||+|-+|..++..+...|++|+++++....
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~   36 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   36 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCc
Confidence            479999999999999999888789999999986543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.0072  Score=36.49  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCC-CccEEEeC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      .++++|.| +|.+|+=+++.++.+|.+|..+.+++--  -+++..+.+.+.... |+++...+
T Consensus        20 P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~   81 (122)
T d1h6va2          20 PGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQF   81 (122)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESC
T ss_pred             CCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECC
Confidence            36799999 8999999999999999988888765321  444555555554433 67766654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0051  Score=39.44  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=47.2

Q ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhH-----------cCCCccEEE
Q 041355            6 NLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRW-----------FPQGIDIYF   74 (180)
Q Consensus         6 ~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~~~   74 (180)
                      ++|.+..-..+|++|+|.| +|+++.+++..+..+|++|+.+.|+.++ .+.+.+.+...           ....+|+++
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~k-a~~l~~~~~~~~~~~~~~~~~~~~~~~dliI   84 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSR-AEELAKLFAHTGSIQALSMDELEGHEFDLII   84 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHH-HHHHHHHTGGGSSEEECCSGGGTTCCCSEEE
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHH-HHHHHHHHhhcccccccccccccccccceee
Confidence            4454443346789999999 8999999888888899998877776543 11222222111           112689999


Q ss_pred             eCCC
Q 041355           75 ENVG   78 (180)
Q Consensus        75 d~~g   78 (180)
                      +|+.
T Consensus        85 N~Tp   88 (170)
T d1nyta1          85 NATS   88 (170)
T ss_dssp             ECCS
T ss_pred             cccc
Confidence            9875

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.19  E-value=0.0042  Score=40.42  Aligned_cols=81  Identities=14%  Similarity=0.068  Sum_probs=54.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCCCcchHHHH---H-----------HhHcCCCccEEEeCCChhhHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEKEEPDLDAA---L-----------KRWFPQGIDIYFENVGGKMLD   83 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~~~~~~~~~---~-----------~~~~~~~~d~~~d~~g~~~~~   83 (180)
                      +|.|.||+|-+|+-+++++..+- .++..++++... ...+.+.   .           .+....+.|++|-|.......
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   85 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKA-GEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQ   85 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTT-TSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHHH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccC-CCccccccccccccccccchhhhhhhhcccceeeeccccchHH
Confidence            57999999999999999998774 477766655443 1111100   0           000012689999999988666


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      .....+...+..+....
T Consensus        86 ~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          86 EIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             HHHHTSCSSCEEEECSS
T ss_pred             HHHHHHHhcCcccccch
Confidence            66777888888776543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.16  E-value=0.0094  Score=36.14  Aligned_cols=60  Identities=12%  Similarity=0.036  Sum_probs=46.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++++|.| +|.+|+=+++..+.+|.+|..+.+.+.-   -+++..+.+++.... ++.+..++
T Consensus        25 ~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~   88 (125)
T d1ojta2          25 VPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNT   88 (125)
T ss_dssp             CCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSC
T ss_pred             cCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCc
Confidence            458899999 8999999999999999999999888764   455666666665443 56665544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=44.31  Aligned_cols=82  Identities=6%  Similarity=-0.077  Sum_probs=53.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------C---------cchHHHHHHhHcCCCccEE-EeC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------E---------EPDLDAALKRWFPQGIDIY-FEN   76 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~---------~~~~~~~~~~~~~~~~d~~-~d~   76 (180)
                      .+|.+||-.|.  +.|..+..+++..+.+|+++..++..        .         ..+..........+.||.+ +|+
T Consensus        52 ~~g~~VLdIGc--G~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECC--TTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeec--cchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence            68899999983  35778888888766789988887553        0         0112222222223478887 565


Q ss_pred             CChh-----------hHHHHHHhhccCCEEEEE
Q 041355           77 VGGK-----------MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        77 ~g~~-----------~~~~~~~~l~~~G~~v~~   98 (180)
                      +...           .+..+.++|+|||+++..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            5321           345567899999999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0036  Score=40.09  Aligned_cols=67  Identities=21%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCCCcchHHHHHHh-----HcCCCccEEEeCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKEEPDLDAALKR-----WFPQGIDIYFENVG   78 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~d~~g   78 (180)
                      +..++.++.+|+|.| +|+++.+++..++..|+ +|.++.|+.++ .+.+.+.+..     .....+|++++|+.
T Consensus        10 ~~~~~~~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~k-a~~L~~~~~~~~~~~~~~~~~DliINaTp   82 (167)
T d1npya1          10 EKYHLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKT-GQYLAALYGYAYINSLENQQADILVNVTS   82 (167)
T ss_dssp             HHTTCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHH-HHHHHHHHTCEEESCCTTCCCSEEEECSS
T ss_pred             HHcCCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHH-HHHHHHhhhhhhhhcccccchhhheeccc
Confidence            556677888999999 89999999999999998 77777776542 1122221111     01127899999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0048  Score=37.43  Aligned_cols=58  Identities=5%  Similarity=0.005  Sum_probs=43.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      .++++|.| +|.+|+=+.+.++.+|.+|..+.+++.-   -+++..+.+.+.... ++++..+
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~   83 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKF   83 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETT
T ss_pred             CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeC
Confidence            36899999 8999999999999999999999998754   345566555554433 6666654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0043  Score=34.35  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++|.|.| +|..|.+.++-++.+|+++++.+..++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            4789999 999999999999999999999887654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.011  Score=41.77  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~   52 (180)
                      +|||+||+|-+|..+++.+...| .+|++++....
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~   36 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc
Confidence            58999999999999988887777 58999877544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.09  E-value=0.0035  Score=42.51  Aligned_cols=86  Identities=16%  Similarity=0.097  Sum_probs=53.9

Q ss_pred             HHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHH----------HHHHhHc-CCCccEEE
Q 041355            9 ILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLD----------AALKRWF-PQGIDIYF   74 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~----------~~~~~~~-~~~~d~~~   74 (180)
                      ......++..+||=.| +|+ |..+..+++ .|++|++++.+++-   ......          ..+.+.. ++.||+|+
T Consensus        34 ~~~~~~~~~~~iLDiG-cGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~  110 (251)
T d1wzna1          34 FKEDAKREVRRVLDLA-CGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT  110 (251)
T ss_dssp             HHHTCSSCCCEEEEET-CTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEE
T ss_pred             HHHhcCCCCCEEEEeC-CCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHh
Confidence            3444567788999998 554 777777776 58899999988643   000000          0011111 23789888


Q ss_pred             eCCCh----------hhHHHHHHhhccCCEEEE
Q 041355           75 ENVGG----------KMLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        75 d~~g~----------~~~~~~~~~l~~~G~~v~   97 (180)
                      -+.+.          ..+..+.++|+|+|.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            65322          145667789999998875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.04  E-value=0.0052  Score=43.83  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +-++|+|+||+|-+|..++..+...|.+|++++|+.+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            45789999999999999999988889999999997664

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.97  E-value=0.014  Score=37.85  Aligned_cols=86  Identities=23%  Similarity=0.249  Sum_probs=54.7

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------------CcchHHHHHHhHcC-
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------------EEPDLDAALKRWFP-   67 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~-   67 (180)
                      +....++++|++||=.| +| .|..++.+|+. +.+|++++.+++.                   ...+..+.   ... 
T Consensus        25 il~~l~~~~g~~VLDiG-cG-sG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~---~~~~   98 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVG-CG-TGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKI   98 (186)
T ss_dssp             HHHHHCCCTTCEEEEES-CT-TSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTS
T ss_pred             HHHhcCCCCCCEEEEEE-CC-eEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc---cccc
Confidence            33556889999999777 33 35556667764 4599999988664                   00111111   122 


Q ss_pred             CCccEEEeCCChh----hHHHHHHhhccCCEEEEEe
Q 041355           68 QGIDIYFENVGGK----MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        68 ~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~~   99 (180)
                      ..+|.++...+..    .+..+.+.|+|+|+++...
T Consensus        99 ~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_          99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            3788887654322    5667778899999987653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0072  Score=44.26  Aligned_cols=44  Identities=30%  Similarity=0.373  Sum_probs=36.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      +.+..++++|++++=.| | |+|..+.++|+..|+ +|++++-++..
T Consensus       208 Il~~l~Lkpgd~fLDLG-C-G~G~~vl~aA~~~g~~~v~GIDiS~~~  252 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLG-S-GVGNCVVQAALECGCALSFGCEIMDDA  252 (406)
T ss_dssp             HHHHTTCCTTCEEEEES-C-TTSHHHHHHHHHHCCSEEEEEECCHHH
T ss_pred             HHHHhCCCCCCEEEeCC-C-CCcHHHHHHHHHcCCCeEEEEeCCHHH
Confidence            34778899999988777 3 589999999999987 89999998654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.94  E-value=0.081  Score=33.93  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------------CcchHHHHHHhH----cC------CCccE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------------EEPDLDAALKRW----FP------QGIDI   72 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------------~~~~~~~~~~~~----~~------~~~d~   72 (180)
                      +|.|.| .|-+|...++.+.... .+++++......               ..+.. ..+.+.    ..      .++|+
T Consensus         3 KVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~g~~~~~~~~vDi   80 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSI-KKFEESGIPVAGTVEDLIKTSDI   80 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGH-HHHHTTTCCCCCCHHHHHHHCSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccc-eeccccceecCCchhhhhhcCCE
Confidence            588999 9999999999888664 588888765443               11111 111110    00      14899


Q ss_pred             EEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           73 YFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ++||+|.- ..+.+-.+++.+-+++..+.
T Consensus        81 ViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          81 VVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            99999965 55555566766656666543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.88  E-value=0.015  Score=37.86  Aligned_cols=81  Identities=12%  Similarity=0.015  Sum_probs=53.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHH--------HHHhHcCCCccEEEeCCC-hh-h----
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA--------ALKRWFPQGIDIYFENVG-GK-M----   81 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~d~~g-~~-~----   81 (180)
                      .|.++.|.| .|.+|....+.++.+|.+|+..++....  .....        .+.+.. ...|++.-++. .+ +    
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~--~~~~~~~~~~~~~~l~~~l-~~sD~v~~~~plt~~T~~li  118 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLP--ESVEKELNLTWHATREDMY-PVCDVVTLNCPLHPETEHMI  118 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCC--HHHHHHHTCEECSSHHHHG-GGCSEEEECSCCCTTTTTCB
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEEEEeecccc--ccccccccccccCCHHHHH-Hhccchhhcccccccchhhh
Confidence            578999999 9999999999999999999999886543  01100        011111 13577766554 22 1    


Q ss_pred             HHHHHHhhccCCEEEEEec
Q 041355           82 LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~~~  100 (180)
                      -...++.++++..+++++-
T Consensus       119 ~~~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         119 NDETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             SHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHHhCCCCCEEEecCc
Confidence            2455677788877777754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.086  Score=33.60  Aligned_cols=83  Identities=13%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------------CcchHHHHHHhHc----------CCCccE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------------EEPDLDAALKRWF----------PQGIDI   72 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------------~~~~~~~~~~~~~----------~~~~d~   72 (180)
                      +|.|.| .|-+|...++.+.... .+++++......               ...+......+..          ..++|+
T Consensus         4 rIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           4 KVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            688999 9999998888776554 588877764432               1111111111110          126999


Q ss_pred             EEeCCChh-hHHHHHHhhccCCEEEEEeccc
Q 041355           73 YFENVGGK-MLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        73 ~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      ++||+|.- +.+.+-..+..+-+.+..+.+.
T Consensus        83 ViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          83 IVDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             EEECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            99999966 6667777888888888876543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.82  E-value=0.025  Score=35.80  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=31.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +++|+|.| +|-+|..+++.+...|.+|+++.++.++
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~g~~V~v~dr~~~~   37 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLES   37 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECChHH
Confidence            67899999 6999999999888889999999998765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.80  E-value=0.03  Score=37.57  Aligned_cols=87  Identities=11%  Similarity=0.027  Sum_probs=58.3

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHhH---
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKRW---   65 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~~---   65 (180)
                      ...+.....+||-.|  +.+|..++.+|+.+  +.+|+.+...++.                   ...+..+.+.+.   
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~  130 (227)
T d1susa1          53 MLLKLINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD  130 (227)
T ss_dssp             HHHHHHTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC
T ss_pred             HHHHhcCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhc
Confidence            334445567899998  56788888999877  4589999888765                   112223333332   


Q ss_pred             --cCCCccEEE-eCCChh---hHHHHHHhhccCCEEEEE
Q 041355           66 --FPQGIDIYF-ENVGGK---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        66 --~~~~~d~~~-d~~g~~---~~~~~~~~l~~~G~~v~~   98 (180)
                        ..+.||++| |+--..   .++.+++.|+++|.++.=
T Consensus       131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             cccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence              234799985 443322   677888999999988764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.0064  Score=40.86  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=53.1

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------CcchH-HHHHHh--HcCCCccEEEeCCCh----
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------EEPDL-DAALKR--WFPQGIDIYFENVGG----   79 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------~~~~~-~~~~~~--~~~~~~d~~~d~~g~----   79 (180)
                      ++++.+||=.| || .|..+..+++ .|++|++++.++..       ..... .....+  ...+.||+|+....-    
T Consensus        40 ~~~~~~vLDiG-cG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          40 LKNPCRVLDLG-GG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             CCSCCEEEEET-CT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             cCCCCEEEEEC-CC-Cchhcccccc-cceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhh
Confidence            56788999888 55 7888888887 48899999998654       00000 000011  112479988754321    


Q ss_pred             ----hhHHHHHHhhccCCEEEEE
Q 041355           80 ----KMLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        80 ----~~~~~~~~~l~~~G~~v~~   98 (180)
                          ..+..+.++|+|||.++..
T Consensus       117 ~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         117 ENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHHHHHHHHHhhcCcCcEEEEE
Confidence                1467778899999988764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.03  Score=39.66  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=36.4

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      +.+..+++++++++=.| | +.|..+.++|+..++ ++++++-++..
T Consensus       143 ~~~~~~l~~~~~vlD~G-c-G~G~~~~~~a~~~~~~~~~Gid~s~~~  187 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLG-S-GVGQVVLQVAAATNCKHHYGVEKADIP  187 (328)
T ss_dssp             HHHHSCCCTTCEEEEET-C-TTSHHHHHHHHHCCCSEEEEEECSHHH
T ss_pred             HHHHcCCCCCCEEEEcC-C-CCCHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            44778899999998888 4 478999999999988 79999987654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.014  Score=40.68  Aligned_cols=57  Identities=14%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCCCccEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~d~~   77 (180)
                      ++|||+||+|-+|..++..+...|..++++...++.   +...+.+.+..   ..+|.++.++
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~---~~~d~v~~~a   62 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFAS---ERIDQVYLAA   62 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHH---HCCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhh---cCCCEEEEcc
Confidence            479999999999999999888889988777665443   22222222222   2578888765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.74  E-value=0.012  Score=34.97  Aligned_cols=58  Identities=17%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      .++++|.| +|.+|+=+++.++.+|.+|..+.+.+.-   -+++..+.+++.... ++++.+.
T Consensus        21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~   82 (115)
T d1lvla2          21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLG   82 (115)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETT
T ss_pred             CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcC
Confidence            47899999 8999999999999999999988887654   344555555554433 5555543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.73  E-value=0.0083  Score=42.56  Aligned_cols=50  Identities=12%  Similarity=0.011  Sum_probs=37.7

Q ss_pred             CchHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355            1 MLIVGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus         1 ~l~a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      |++-|.-+..... ..-++|||+||+|-+|...+..+...|.+|+++++..
T Consensus         1 ~~~~~~~~~~~~~-~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_           1 MMSRYEELRKELP-AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CCCHHHHHHHHHH-HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCchHHHHHHhCC-CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4445555533322 3446799999999999999999999999999998643

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.73  E-value=0.0053  Score=42.85  Aligned_cols=84  Identities=17%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------C------------cchHHHHHHhHc-CC
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------E------------EPDLDAALKRWF-PQ   68 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~------------~~~~~~~~~~~~-~~   68 (180)
                      .+.+++.+||=.| || .|..++.+++. |++|++++.+++.          .            ..++...-.... .+
T Consensus        52 l~~~~~~~vLD~G-cG-~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (292)
T d1xvaa_          52 LRQHGCHRVLDVA-CG-TGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD  128 (292)
T ss_dssp             HHHTTCCEEEESS-CT-TSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred             hhhcCCCEEEEec-CC-CcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence            3445678999888 33 57778888875 8999999998653          0            001110111111 23


Q ss_pred             CccEEEeCCCh---------------hhHHHHHHhhccCCEEEEE
Q 041355           69 GIDIYFENVGG---------------KMLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        69 ~~d~~~d~~g~---------------~~~~~~~~~l~~~G~~v~~   98 (180)
                      .||.++.....               ..+..+.+.|+|+|.++.-
T Consensus       129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            78988753210               1467777899999998763

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.02  Score=38.24  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC-------------------CcchHHHHHHh--
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK-------------------EEPDLDAALKR--   64 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~-------------------~~~~~~~~~~~--   64 (180)
                      +....+....++||-.|  +..|..++.+|+.+  +.+|+++..+++.                   ...+..+.+.+  
T Consensus        51 L~~L~~~~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          51 LANLARLIQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHTTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHccCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            33444556678999998  45788888888876  4589999888775                   11122222222  


Q ss_pred             --HcCCCccEEEeCCChh----hHHHHHHhhccCCEEEEE
Q 041355           65 --WFPQGIDIYFENVGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        65 --~~~~~~d~~~d~~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                        ...+.||++|--...+    .++.+++.|+++|.++.=
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence              2234799986544432    577888999999988764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.68  E-value=0.0084  Score=37.35  Aligned_cols=82  Identities=15%  Similarity=0.042  Sum_probs=50.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHc---CCEEEEEeCCCCC------CcchHH-HHHHhHcCCCccEEEeCCChhhHHHHHH-
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA---GCYVVGSAGSKEK------EEPDLD-AALKRWFPQGIDIYFENVGGKMLDAVLL-   87 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~---g~~vi~~~~~~~~------~~~~~~-~~~~~~~~~~~d~~~d~~g~~~~~~~~~-   87 (180)
                      +|.|.||+|-+|+-.++++..+   ..++..+.++...      ..+++. ..+....-.+.|++|-|.+.+....... 
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~~   83 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAER   83 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhccc
Confidence            5899999999999999999643   3477766666554      111110 0011111126899999999885555444 


Q ss_pred             hhccCCEEEEEec
Q 041355           88 NMRLRGRIAVSSI  100 (180)
Q Consensus        88 ~l~~~G~~v~~~~  100 (180)
                      ....+.+++..+.
T Consensus        84 ~~~~g~~VID~Ss   96 (144)
T d2hjsa1          84 ARAAGCSVIDLSG   96 (144)
T ss_dssp             HHHTTCEEEETTC
T ss_pred             cccCCceEEeech
Confidence            4555666666543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.59  E-value=0.12  Score=33.06  Aligned_cols=80  Identities=11%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCCC------------cchHHHHHHhHc-CCCccEEEeCCChh-hHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKE------------EPDLDAALKRWF-PQGIDIYFENVGGK-MLD   83 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~~------------~~~~~~~~~~~~-~~~~d~~~d~~g~~-~~~   83 (180)
                      ++.|.| +|.+|..-++.++.. ++++++++..+...            ...+...+.+.. ...+|+++-|+... .++
T Consensus         3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            578999 899998877777766 66898887765430            000111222222 23799999998876 677


Q ss_pred             HHHHhhccCCEEEEEec
Q 041355           84 AVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        84 ~~~~~l~~~G~~v~~~~  100 (180)
                      .+..++.. |.-+.+.-
T Consensus        82 ~~~~~l~~-g~~v~~EK   97 (184)
T d1ydwa1          82 WAIKAAEK-GKHILLEK   97 (184)
T ss_dssp             HHHHHHTT-TCEEEECS
T ss_pred             hhhhhhhc-cceeeccc
Confidence            77777765 45566643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.013  Score=41.15  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++|||+||+|-+|..++..+...|.+|+++++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            579999999999999998888889999998764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.58  E-value=0.023  Score=40.65  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCE-EEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCY-VVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~-vi~~~~   49 (180)
                      +|||+||+|-+|..++..+...|.+ |+++++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            5899999999999998888888885 555543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.01  Score=42.06  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.1

Q ss_pred             EE-EEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YV-YVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~v-lI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +| ||+||+|-+|..++..+...|++|+++++...
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            57 99999999999999988888999999998653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.54  E-value=0.014  Score=39.50  Aligned_cols=36  Identities=17%  Similarity=0.079  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ..++|+|.| +|+.|+++...++..|.+|.++.++++
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            467899999 899999988888888999999987654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.0098  Score=43.04  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEe
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSA   48 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~   48 (180)
                      |.+|||+||+|-+|..+++.+...|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            67999999999999999999988999999986

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.47  E-value=0.0035  Score=41.65  Aligned_cols=81  Identities=19%  Similarity=0.102  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHH-H--------------HHhH--cCCCccEEEe
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDA-A--------------LKRW--FPQGIDIYFE   75 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~-~--------------~~~~--~~~~~d~~~d   75 (180)
                      -++++++||-.| || .|..+..+++ .|.+|++++.+++.  -+... .              ..+.  ..+.||+|+-
T Consensus        34 ~l~~~~~ILDiG-cG-~G~~~~~la~-~~~~v~giD~S~~~--i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~  108 (226)
T d1ve3a1          34 YMKKRGKVLDLA-CG-VGGFSFLLED-YGFEVVGVDISEDM--IRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF  108 (226)
T ss_dssp             SCCSCCEEEEET-CT-TSHHHHHHHH-TTCEEEEEESCHHH--HHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             hcCCCCEEEEEC-CC-cchhhhhHhh-hhcccccccccccc--hhhhhhhhccccccccccccccccccccCcCceEEEE
Confidence            367889999999 44 3778888887 48899999987543  00000 0              0011  1136888765


Q ss_pred             CCC-----h-h---hHHHHHHhhccCCEEEEE
Q 041355           76 NVG-----G-K---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        76 ~~g-----~-~---~~~~~~~~l~~~G~~v~~   98 (180)
                      ...     . +   .+..+.+.|+|||+++..
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            322     1 1   356677899999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.47  E-value=0.0095  Score=38.52  Aligned_cols=36  Identities=8%  Similarity=0.017  Sum_probs=31.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      +++|+|.| +|+.|+.++..++.+|+ .|.++.+++.-
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            67899999 89999999999999998 58888877654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.43  E-value=0.0061  Score=39.34  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|.|.||+|++|.+..+.+...|++|+...|+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5788887999999999999999999999988754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.40  E-value=0.012  Score=40.38  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=30.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      |++|+|.| +|+.|+.+...++..|.+|.++..++.
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            57899999 899999998888889999999887654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.042  Score=34.83  Aligned_cols=78  Identities=19%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGR   94 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~   94 (180)
                      -.|++|+|.|.+.-+|.-+..++...|++|+.+.+.    ..+..+.+++     .|+++-++|.+.+-. -..++++..
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~----t~~l~~~~~~-----ADivI~a~G~p~~i~-~~~vk~g~v  104 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF----TKNLRHHVEN-----ADLLIVAVGKPGFIP-GDWIKEGAI  104 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS----CSCHHHHHHH-----CSEEEECSCCTTCBC-TTTSCTTCE
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhccccccccc----cchhHHHHhh-----hhHhhhhccCccccc-ccccCCCcE
Confidence            379999999999999999999999999998766543    4455555555     699999999763211 246788888


Q ss_pred             EEEEeccc
Q 041355           95 IAVSSIIS  102 (180)
Q Consensus        95 ~v~~~~~~  102 (180)
                      ++.+|...
T Consensus       105 vIDvGi~~  112 (166)
T d1b0aa1         105 VIDVGINR  112 (166)
T ss_dssp             EEECCCEE
T ss_pred             EEecCcee
Confidence            89888753

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.044  Score=35.61  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++|.|.| +|.+|....+++...|++|+..+++++.
T Consensus         5 kkvaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (192)
T d1f0ya2           5 KHVTVIG-GGLMGAGIAQVAAATGHTVVLVDQTEDI   39 (192)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            5799999 7999999999999999999999988764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.094  Score=32.36  Aligned_cols=34  Identities=24%  Similarity=0.129  Sum_probs=27.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSK   51 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~   51 (180)
                      .+|.|.||+|.+|..+..++...+.  +++.++..+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            3689999889999999999988886  677776643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.33  E-value=0.14  Score=32.49  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------------CcchHHHHHHhH-c---------CCCccE
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------------EEPDLDAALKRW-F---------PQGIDI   72 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------------~~~~~~~~~~~~-~---------~~~~d~   72 (180)
                      +|.|.| .|-+|....+.+...+ .+++++......               ..++-.....+. .         -.++|+
T Consensus         3 ~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            688999 9999999888887665 478877655432               001111111110 0         026899


Q ss_pred             EEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           73 YFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ++||+|.- ....+-..+..+-+.+..+.
T Consensus        82 ViEcTG~f~~~~~~~~hl~~G~K~vi~~~  110 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKEKGIKAIFQGG  110 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEECC
Confidence            99999965 55566677877777766543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.30  E-value=0.014  Score=36.39  Aligned_cols=77  Identities=18%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             EEEEecCCchHHHHHHHHHHH-c---CCEEEEEeCCCCC-------Cc-----chHHHHHHhHcCCCccEEEeCCChhhH
Q 041355           19 YVYVSAASGAVGQLVGQFAKL-A---GCYVVGSAGSKEK-------EE-----PDLDAALKRWFPQGIDIYFENVGGKML   82 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~-~---g~~vi~~~~~~~~-------~~-----~~~~~~~~~~~~~~~d~~~d~~g~~~~   82 (180)
                      +|.|.||+|-+|+-.++++.. .   ..++....++...       ..     +.......    .+.|++|-|.+++..
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~----~~~DvvF~alp~~~s   77 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL----KQLDAVITCQGGSYT   77 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHH----TTCSEEEECSCHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhh----ccccEEEEecCchHH
Confidence            588999999999999985532 2   3577666555433       00     00000111    258999999998866


Q ss_pred             HHHHHhhccCC---EEEEEe
Q 041355           83 DAVLLNMRLRG---RIAVSS   99 (180)
Q Consensus        83 ~~~~~~l~~~G---~~v~~~   99 (180)
                      ......+...|   .++...
T Consensus        78 ~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          78 EKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             HHHHHHHHHTTCCSEEEESS
T ss_pred             HHHhHHHHHcCCceEEEeCC
Confidence            66665555444   355553

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.011  Score=37.55  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--CcchH-------------HHHHHhHcCCCccEEEeCCChhhH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--EEPDL-------------DAALKRWFPQGIDIYFENVGGKML   82 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--~~~~~-------------~~~~~~~~~~~~d~~~d~~g~~~~   82 (180)
                      +|.|.|++|=+|+++++++... ++++++...++..  ...+.             ...+ +.....+|+++|++--+..
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~DViIDFs~p~~~   84 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL-DAVKDDFDVFIDFTRPEGT   84 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCS-TTTTTSCSEEEECSCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccH-HHHhcccceEEEeccHHHH
Confidence            5899999999999999999876 6677665544322  00000             0000 0112368999999887777


Q ss_pred             HHHHHhhccCCEEEEEeccc
Q 041355           83 DAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~~~  102 (180)
                      ...++.....|.=+.+|+.+
T Consensus        85 ~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          85 LNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             HHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHhccceeEEecCC
Confidence            77778777778777777655

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.23  E-value=0.025  Score=34.34  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=29.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +++|.| .|.+|..+++.+...|.+|++++.+++.
T Consensus         2 ~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~   35 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEK   35 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHH
Confidence            577888 8999999999999999999999886543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.04  Score=38.88  Aligned_cols=32  Identities=25%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      ++|||+||+|-+|..++..+...|.+|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999999999999999888888999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.17  E-value=0.053  Score=33.59  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+|.|.||.|-+|......++..|++|.+.++....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   45 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence            579999988999999999999999999999887653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.051  Score=34.82  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=68.8

Q ss_pred             EEEEecCCchHHHH-HHHHHHHc-C-CEEEEEeCCCCCCcchHH---------HHHHhHcC-CCccEEEeCCChh-hHHH
Q 041355           19 YVYVSAASGAVGQL-VGQFAKLA-G-CYVVGSAGSKEKEEPDLD---------AALKRWFP-QGIDIYFENVGGK-MLDA   84 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~-~iqlak~~-g-~~vi~~~~~~~~~~~~~~---------~~~~~~~~-~~~d~~~d~~g~~-~~~~   84 (180)
                      ++.|.| +|.+|.- -+...+.. + .+++++++++....+.+.         ..+.+... ..+|+++-|+... ....
T Consensus         5 rigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~   83 (181)
T d1zh8a1           5 RLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   83 (181)
T ss_dssp             EEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence            578999 8989864 45656554 3 488888877543111111         11222222 3689999998876 5666


Q ss_pred             HHHhhccCCEEEEEeccccccCCCCccccchHHHhh-cCcEE-EeeeccchHHHHHHHHHHHHHHHHCCCccce
Q 041355           85 VLLNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG-KRIRL-EGFLAGDYYHLYLKFLELVIPAIREGKMVYV  156 (180)
Q Consensus        85 ~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  156 (180)
                      +..++.. |.-+.+.-+...+..   ....+..... ++..+ .++....  ......+.++.+++.+|.+..+
T Consensus        84 ~~~al~~-gk~V~~EKPl~~~~~---e~~~l~~~~~~~~~~~~v~~~~R~--~~~~~~~~~~~~~i~~G~ig~i  151 (181)
T d1zh8a1          84 IEKALRK-GVHVICEKPISTDVE---TGKKVVELSEKSEKTVYIAENFRE--NSYQKEFEDFYQVVAEGKPNDL  151 (181)
T ss_dssp             HHHHHHT-TCEEEEESSSSSSHH---HHHHHHHHHHHCSSCEEEECGGGC--CHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccccc-chhhhcCCCCcCCHH---HHHHHHHHHHHhCCeEEEEeeccc--cccCHHHHHHHHHHHCCCCccC
Confidence            6666654 566666543321100   0001112221 22222 3332211  1233457788889999987654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.08  E-value=0.029  Score=33.59  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--CcchHHHHHHhHcCC-CccEEEe
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--EEPDLDAALKRWFPQ-GIDIYFE   75 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--~~~~~~~~~~~~~~~-~~d~~~d   75 (180)
                      +.+.+++|.| +|.+|+=+++.+..+|.+|..+.+.+.-  -+++..+.+.+.... ++++..+
T Consensus        30 ~~~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~   92 (122)
T d1xhca2          30 ENSGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLN   92 (122)
T ss_dssp             HHHSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECS
T ss_pred             hcCCcEEEEC-CcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeC
Confidence            4567899999 8999999999999999999988876543  233344334333222 4555443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.02  E-value=0.052  Score=32.08  Aligned_cols=60  Identities=12%  Similarity=0.063  Sum_probs=41.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHc---CCEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLA---GCYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~---g~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++++|.| +|.+|.=+++++..+   |.+|..+.+.+.-   -++++...+++.... ++++.+++
T Consensus        17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~   83 (117)
T d1feca2          17 APKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHE   83 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred             cCCeEEEEC-CChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCC
Confidence            347899999 899998777765544   7788888887654   345565556554433 67777654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.01  E-value=0.022  Score=36.88  Aligned_cols=35  Identities=11%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ++|.|.| +|.+|...++++-..|++|+..+.+++.
T Consensus         5 ~~vaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLG-AGIMGGGIAYQSASKGTPILMKDINEHG   39 (186)
T ss_dssp             SSEEEEC-CHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            4689999 7999998888888889999999988664

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.88  E-value=0.029  Score=37.47  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +.+++|+|.| +|+.|+.+...++..|.+|..+..++.-
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecccc
Confidence            4568999999 8999999999999999999988877654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.87  E-value=0.023  Score=36.56  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCC-C-CcchHHHH---HH-------------hHcCCCccEEEeCCCh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKE-K-EEPDLDAA---LK-------------RWFPQGIDIYFENVGG   79 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~-~-~~~~~~~~---~~-------------~~~~~~~d~~~d~~g~   79 (180)
                      +|.|.||+|-+|+-+++++..+ ..++..+..... . ..+.+...   +.             .....++|++|-|.+.
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~   82 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH   82 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence            5899999999999999999988 567665443221 1 11111110   00             0112368999999998


Q ss_pred             hhHHHHHHh-hccCCEEEEEec
Q 041355           80 KMLDAVLLN-MRLRGRIAVSSI  100 (180)
Q Consensus        80 ~~~~~~~~~-l~~~G~~v~~~~  100 (180)
                      ......... +..+-+++....
T Consensus        83 ~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          83 EVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             HHHHHHHHHHHHTTCEEEECSS
T ss_pred             hhHHHHhhhhhhcCceeecccc
Confidence            755554444 455556666543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.87  E-value=0.017  Score=36.48  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh------HcC-----CCccEEEeCCChhhHHHHHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR------WFP-----QGIDIYFENVGGKMLDAVLL   87 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~------~~~-----~~~d~~~d~~g~~~~~~~~~   87 (180)
                      +|.|.| .|-+|....+.++..|.+|++.+++++.     .+..++      ...     ...|++|-|+..+.....++
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~   75 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQST-----CEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE   75 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH-----HHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH
T ss_pred             EEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchH-----HHHHHHhhccceeeeecccccccccccccCcHhhhhhhhh
Confidence            588998 8999998888888889999998776432     111111      000     25899999987554444444


Q ss_pred             h----hccCCEEEEEe
Q 041355           88 N----MRLRGRIAVSS   99 (180)
Q Consensus        88 ~----l~~~G~~v~~~   99 (180)
                      .    +.++-.++.++
T Consensus        76 ~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          76 KLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             HHGGGSCTTCEEEECC
T ss_pred             hhhhhcccccceeecc
Confidence            3    44455555554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.13  Score=31.68  Aligned_cols=80  Identities=9%  Similarity=-0.070  Sum_probs=50.6

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-----------------CcchHHHHHHhHcCCCccEEEeCCChh
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-----------------EEPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      +.++|.| .|.+|..+++.+...|.+++++...++.                 .+..-.+.+++.--...|.++-+.+.+
T Consensus         4 nHiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence            5688999 8999999999999999998888876542                 111112233333223678888877755


Q ss_pred             --hHH--HHHHhhccCCEEEEE
Q 041355           81 --MLD--AVLLNMRLRGRIAVS   98 (180)
Q Consensus        81 --~~~--~~~~~l~~~G~~v~~   98 (180)
                        .+.  ...+.+.|.-+++.-
T Consensus        83 ~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          83 ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCceEEE
Confidence              222  222344556555544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.79  E-value=0.031  Score=36.74  Aligned_cols=60  Identities=23%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHH---------HhHcCCCccEEEeCCChh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAAL---------KRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~d~~~d~~g~~   80 (180)
                      .|.+|+|.| .|.||..+.+++...|++|++++...+.    .....         .+...-..|+++-|..+.
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~----~~~~~~~g~~~~~~~~~~~~~~DI~iPcA~~~   94 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTER----VAHAVALGHTAVALEDVLSTPCDVFAPCAMGG   94 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHTTCEECCGGGGGGCCCSEEEECSCSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHH----HHHHHhhcccccCccccccccceeeecccccc
Confidence            688999999 9999999999999999999977664332    11100         111222679988886544

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.061  Score=32.10  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=26.6

Q ss_pred             CCCEEEEecCCchH--------HHHHHHHHH---HcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAV--------GQLVGQFAK---LAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~v--------G~~~iqlak---~~g~~vi~~~~~~~~   53 (180)
                      ..++|||.| +|+.        -++++|.++   ..|++++.+..+++.
T Consensus         3 ~~kkvlViG-sGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLG-GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEEC-CCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEEC-CCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            356899999 7764        255555555   559999988888776

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.73  E-value=0.047  Score=36.92  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -.|.+|+|.| .|.||..+++++...|++|+++..+..
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~~g   65 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDING   65 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECSSC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecccc
Confidence            3789999999 999999999999999999998887654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.70  E-value=0.072  Score=33.88  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------------------Ccch--HH--HHHHh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------------------EEPD--LD--AALKR   64 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------------------~~~~--~~--~~~~~   64 (180)
                      +|.|.| .|-+|.++.+.+...+.+|+++-.+...                              +...  +.  ..+.+
T Consensus         2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            578999 9999999999887778888887664332                              0000  00  00011


Q ss_pred             H-cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           65 W-FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        65 ~-~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      . ... ++|+++||+|.- +.+.+...+..+.+-|.+..+
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP  120 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP  120 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCC
Confidence            0 012 799999999965 667777788877766666543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.63  E-value=0.059  Score=34.18  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-----CcchHHHHHHhHcCCCccEEEeCCChh-hHHHHHHhhcc
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-----EEPDLDAALKRWFPQGIDIYFENVGGK-MLDAVLLNMRL   91 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~   91 (180)
                      +|.|+| +|.+|...+..++.. +++++++++.+..     ...... .... ...++|+++.|.+.. ..+.+..+|..
T Consensus         5 rvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~-~~~~-~~~~~D~Vvi~tp~~~h~~~a~~aL~a   81 (170)
T d1f06a1           5 RVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVA-DVDK-HADDVDVLFLCMGSATDIPEQAPKFAQ   81 (170)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGG-GGGG-TTTTCSEEEECSCTTTHHHHHHHHHTT
T ss_pred             eEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccch-hhhh-hccccceEEEeCCCcccHHHHHHHHHC
Confidence            578999 899998877777765 5688877766654     100010 1111 123689999999876 77788888888


Q ss_pred             CCEEEEE
Q 041355           92 RGRIAVS   98 (180)
Q Consensus        92 ~G~~v~~   98 (180)
                      |-.++..
T Consensus        82 G~~vv~~   88 (170)
T d1f06a1          82 FACTVDT   88 (170)
T ss_dssp             TSEEECC
T ss_pred             CCcEEEe
Confidence            8776643

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.17  Score=31.37  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=26.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~   50 (180)
                      +|.|.|++|++|.-++.+.+..  .++|++..-.
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            6899999999999999999987  3577765443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.22  Score=31.38  Aligned_cols=79  Identities=15%  Similarity=-0.036  Sum_probs=47.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHc--CC--EEEEEeCCCCC-----------------------CcchHHHHHHhH-cCC-C
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA--GC--YVVGSAGSKEK-----------------------EEPDLDAALKRW-FPQ-G   69 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~--g~--~vi~~~~~~~~-----------------------~~~~~~~~~~~~-~~~-~   69 (180)
                      .|.|.| .|.||...+++....  +.  +|.+++.+...                       ......+.+... ... .
T Consensus         6 ~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (168)
T d1ebfa1           6 NVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (168)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCC
Confidence            478888 999999988877654  23  67777665332                       001111222222 222 6


Q ss_pred             ccEEEeCCChh-hHHHHHHhhccCCEEEEE
Q 041355           70 IDIYFENVGGK-MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        70 ~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~   98 (180)
                      .++++||.+++ ........|..+=.+|+.
T Consensus        85 ~~vivd~t~~~~~~~~~~~aL~~G~hVVTA  114 (168)
T d1ebfa1          85 PVILVDNTSSAYIAGFYTKFVENGISIATP  114 (168)
T ss_dssp             CEEEEECSCCHHHHTTHHHHHHTTCEEECC
T ss_pred             ceEEEEecCChHHHHHHHHHHHcCCeEEec
Confidence            78999999876 555555666666555544

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.053  Score=34.53  Aligned_cols=77  Identities=16%  Similarity=0.077  Sum_probs=58.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHhHcCCCccEEEeCCChhhHHHHHHhhccCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLLNMRLRGRI   95 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~~l~~~G~~   95 (180)
                      .|++|+|.|.+.-+|.-+..++...|++|..+.+.    ..+..+..+     ..|+++-++|...+-. -..++++-.+
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~----t~~l~~~~~-----~aDivi~a~G~~~~i~-~~~vk~g~iv  107 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK----TAHLDEEVN-----KGDILVVATGQPEMVK-GEWIKPGAIV  107 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----CSSHHHHHT-----TCSEEEECCCCTTCBC-GGGSCTTCEE
T ss_pred             ccceEEEEecCCccchHHHHHHHhccCceEEEecc----cccHHHHHh-----hccchhhccccccccc-cccccCCCeE
Confidence            79999999999999999999999999999977664    334433333     3799999999763311 2477888888


Q ss_pred             EEEeccc
Q 041355           96 AVSSIIS  102 (180)
Q Consensus        96 v~~~~~~  102 (180)
                      +.+|...
T Consensus       108 iDvgi~~  114 (170)
T d1a4ia1         108 IDCGINY  114 (170)
T ss_dssp             EECCCBC
T ss_pred             eccCccc
Confidence            8887643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.42  E-value=0.027  Score=37.78  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC------------------CcchHHHHHHhHcCCCcc
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      ..++||++||=.|+  +.|..+..+++..|-  +|++++.++..                  .+........ .....+|
T Consensus        69 l~i~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~-~~~~~vD  145 (227)
T d1g8aa_          69 FPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR-ALVPKVD  145 (227)
T ss_dssp             CCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT-TTCCCEE
T ss_pred             cccCCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc-ccccceE
Confidence            45889999998884  348889999998864  89999998664                  0000000000 0112678


Q ss_pred             EEEeCCCh--h---hHHHHHHhhccCCEEEEE
Q 041355           72 IYFENVGG--K---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        72 ~~~d~~g~--~---~~~~~~~~l~~~G~~v~~   98 (180)
                      +++..+..  +   .+..+...|+++|+++..
T Consensus       146 ~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         146 VIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            77654431  1   466777899999998765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.39  E-value=0.07  Score=31.55  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=41.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcC---CEEEEEeCCCCC---CcchHHHHHHhHcCC-CccEEEeC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAG---CYVVGSAGSKEK---EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g---~~vi~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      ..++++|.| +|.+|.=+...+..++   .+|..+.+.+.-   -+++..+.+.+.... |+++.+++
T Consensus        19 ~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~   85 (117)
T d1aoga2          19 PPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE   85 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred             cCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence            457899999 7999988777766654   468888776654   345555666655443 77777764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.029  Score=34.88  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=29.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|.+|||.| +|.+|.--+..+...|++|.+++..
T Consensus        12 ~gkrvLViG-gG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIG-GGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEE-ESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            688999999 7999999999999999998888653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.31  E-value=0.041  Score=38.25  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|.+|+|.| .|-||..+++.+...|++|+++..++..
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~~G~   71 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGESDGS   71 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEccchh
Confidence            578999999 9999999999999999999998876544

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.30  E-value=0.089  Score=32.66  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHHh-HcC------CCccEEEeCCChhhHHHHHHhhcc
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALKR-WFP------QGIDIYFENVGGKMLDAVLLNMRL   91 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~~-~~~------~~~d~~~d~~g~~~~~~~~~~l~~   91 (180)
                      +|.+.| +|-+|.+.+.-....|.++++..++.++ .+++.+...- .+.      ...|++|-|+--+.+...++.+++
T Consensus         2 kIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~-~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIG-VGKMASAIIKGLKQTPHELIISGSSLER-SKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHF   79 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHH-HHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSCC
T ss_pred             EEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHh-HHhhccccceeeechhhhhhhccceeeeecchHhHHHHhhhccc
Confidence            478888 9999998777666668899888776543 0111111100 000      147899999976677888888888


Q ss_pred             CCEEEEEec
Q 041355           92 RGRIAVSSI  100 (180)
Q Consensus        92 ~G~~v~~~~  100 (180)
                      +..++.+..
T Consensus        80 ~~~iis~~a   88 (152)
T d2ahra2          80 KQPIISMAA   88 (152)
T ss_dssp             CSCEEECCT
T ss_pred             ceeEecccc
Confidence            777766543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.15  Score=30.66  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             CCCEEEEecCCchH--------HHHHHHHHH---HcCCEEEEEeCCCCC--C----------cchHHHHHHhHcC-CCcc
Q 041355           16 KGEYVYVSAASGAV--------GQLVGQFAK---LAGCYVVGSAGSKEK--E----------EPDLDAALKRWFP-QGID   71 (180)
Q Consensus        16 ~g~~vlI~Ga~g~v--------G~~~iqlak---~~g~~vi~~~~~~~~--~----------~~~~~~~~~~~~~-~~~d   71 (180)
                      .-++|||.| +|+.        -++++|.++   ..|++++.+..+++.  .          ++=..+.+.+... .+.|
T Consensus         6 ~~kkvlilG-sGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~pd   84 (127)
T d1a9xa3           6 DIKSILILG-AGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPD   84 (127)
T ss_dssp             SCCEEEEEC-CCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEEC-CCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHHHHHhCcC
Confidence            457899999 7764        255666555   459999988888876  0          1111223333322 2678


Q ss_pred             EEEeCCChhh-HHHHHHh
Q 041355           72 IYFENVGGKM-LDAVLLN   88 (180)
Q Consensus        72 ~~~d~~g~~~-~~~~~~~   88 (180)
                      .++-+.|+++ ++..+++
T Consensus        85 ~il~~~GGQtalnla~~L  102 (127)
T d1a9xa3          85 AVLPTMGGQTALNCALEL  102 (127)
T ss_dssp             EEECSSSHHHHHHHHHHH
T ss_pred             CeEEEeeeehHhHHHHHH
Confidence            8888888884 4444443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.2  Score=33.60  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=27.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ..+|+|.| +|++|..+++.+-..|. ++..++..
T Consensus        30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            46899999 99999999999999999 66666644

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.98  E-value=0.041  Score=34.76  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=48.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCCCcchHHHHH----------HhHcCCCccEEEeCCChh----hH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEKEEPDLDAAL----------KRWFPQGIDIYFENVGGK----ML   82 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~~~~~~~~~~----------~~~~~~~~d~~~d~~g~~----~~   82 (180)
                      +|+|.| .|-+|...+.-++..|.  +|++.+++++.  .+.....          ........|+++-|+.-+    .+
T Consensus         3 ~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl   79 (171)
T d2g5ca2           3 NVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPES--ISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA   79 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH
T ss_pred             EEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHH--HHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhh
Confidence            689999 89999988888888875  78888776432  0000000          000112468888888754    33


Q ss_pred             HHHHHhhccCCEEEEEec
Q 041355           83 DAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        83 ~~~~~~l~~~G~~v~~~~  100 (180)
                      ..+...+.++-.++.+++
T Consensus        80 ~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHSCTTCEEEECCS
T ss_pred             hhhhcccccccccccccc
Confidence            444455666666666654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.95  E-value=0.057  Score=37.34  Aligned_cols=37  Identities=19%  Similarity=0.133  Sum_probs=31.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ....+|+|+| +|+.|+.+...+...|.+|.++...+.
T Consensus        28 ~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4557899999 999999988888888999999887653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.94  E-value=0.41  Score=30.39  Aligned_cols=75  Identities=12%  Similarity=0.037  Sum_probs=47.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-C----------------cchHHHHHHhHcCCCccEEEeCCChh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-E----------------EPDLDAALKRWFPQGIDIYFENVGGK   80 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-~----------------~~~~~~~~~~~~~~~~d~~~d~~g~~   80 (180)
                      +|.|.||+|-+|+-+++++..+- .++..+.++... .                ..+. +.+.    .+.|++|-|.+..
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~-~~~~----~~~dvvf~a~p~~   77 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDP-EKVS----KNCDVLFTALPAG   77 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCH-HHHH----HHCSEEEECCSTT
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCH-hHhc----cccceEEEccccH
Confidence            58899999999999999997764 477777665443 0                0011 1111    1478999999877


Q ss_pred             hHHHHHHhhccCCEEEEEe
Q 041355           81 MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        81 ~~~~~~~~l~~~G~~v~~~   99 (180)
                      ........ ..+-+++...
T Consensus        78 ~s~~~~~~-~~~~~VIDlS   95 (176)
T d1vkna1          78 ASYDLVRE-LKGVKIIDLG   95 (176)
T ss_dssp             HHHHHHTT-CCSCEEEESS
T ss_pred             HHHHHHHh-hccceEEecC
Confidence            54444433 2345555553

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.87  E-value=0.092  Score=35.72  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=33.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -.|.+|+|.| .|-||..+++.+...|++|+++..+..
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD~~G   70 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSGPDG   70 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEETTE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            3688999999 999999999999999999998877654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.86  E-value=0.21  Score=35.56  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=25.5

Q ss_pred             EEEEecCCchHHHHHH-HHHHHcCCEEEEEeC
Q 041355           19 YVYVSAASGAVGQLVG-QFAKLAGCYVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~i-qlak~~g~~vi~~~~   49 (180)
                      +|||+||+|-+|...+ +|++..|.+|++++.
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            6999999999997755 566778999998863

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.81  E-value=0.029  Score=38.51  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+|.| +|++|+++...++..|.+|.++.+.++
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            589999 899999999999999999999988753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.74  E-value=0.23  Score=31.60  Aligned_cols=71  Identities=15%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------Ccch-----------HHHHHHhHcCCCccEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPD-----------LDAALKRWFPQGIDIYFENV   77 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~-----------~~~~~~~~~~~~~d~~~d~~   77 (180)
                      +|.|.| +|..|.+....+-..|.+|....+..+.          ..+.           ....+.+.. .+.|+++-++
T Consensus         2 kI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ad~Ii~av   79 (180)
T d1txga2           2 IVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-ENAEVVLLGV   79 (180)
T ss_dssp             EEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-TTCSEEEECS
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-hccchhhccc
Confidence            578999 8999999888887778888877764221          0000           001111111 2579999999


Q ss_pred             ChhhHHHHHHhhcc
Q 041355           78 GGKMLDAVLLNMRL   91 (180)
Q Consensus        78 g~~~~~~~~~~l~~   91 (180)
                      ....+...+..+++
T Consensus        80 ps~~~~~~~~~l~~   93 (180)
T d1txga2          80 STDGVLPVMSRILP   93 (180)
T ss_dssp             CGGGHHHHHHHHTT
T ss_pred             chhhhHHHHHhhcc
Confidence            98766666655443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.54  E-value=0.068  Score=36.04  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      .|+|.| +|+.|+++..+++..|. +|.++.+++..
T Consensus         3 ~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAG-AGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            589999 89999999999999997 88888877654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.42  E-value=0.041  Score=35.67  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=54.8

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchH---HHHHHhHc-C
Q 041355            5 GNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDL---DAALKRWF-P   67 (180)
Q Consensus         5 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~---~~~~~~~~-~   67 (180)
                      ...+.+...+.++++||=.|+  +.|..++.+++ .+.+|++++-++..             ....+   ...+.+.. +
T Consensus        41 t~lLi~~l~~~~~~~VLDiGc--G~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~  117 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGC--GYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETC--TTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHhCCcCCCCeEEEEee--cCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence            345667778889999998873  34666666666 45699998887543             00000   00011111 2


Q ss_pred             CCccEEEeC----CChh----hHHHHHHhhccCCEEEEE
Q 041355           68 QGIDIYFEN----VGGK----MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        68 ~~~d~~~d~----~g~~----~~~~~~~~l~~~G~~v~~   98 (180)
                      +.||+|+-.    .+.+    .+..+.+.|+|+|.++..
T Consensus       118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            379988752    2322    356667889999988654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.26  Score=31.06  Aligned_cols=80  Identities=21%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC-------------------------------------CcchHHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK-------------------------------------EEPDLDA   60 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~-------------------------------------~~~~~~~   60 (180)
                      +|.|.| .|-+|.++.+.+.... .+|+++-.....                                     ...+. +
T Consensus         3 kigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p-~   80 (166)
T d1gado1           3 KVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP-A   80 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred             EEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh-H
Confidence            578988 9999999888776653 588877765432                                     00000 0


Q ss_pred             HHHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           61 ALKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        61 ~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      .+- +..-++|+++||+|.- +.+.+...+..+.+-|.+..+
T Consensus        81 ~i~-W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP  121 (166)
T d1gado1          81 NLK-WDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP  121 (166)
T ss_dssp             GGC-HHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             HCC-ccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecc
Confidence            000 1011799999999965 666777788877766666543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.33  E-value=0.043  Score=36.18  Aligned_cols=85  Identities=13%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-Cc-chHH-------------HHHHhHcC--CCccEE
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-EE-PDLD-------------AALKRWFP--QGIDIY   73 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-~~-~~~~-------------~~~~~~~~--~~~d~~   73 (180)
                      ..++||++||=.|+++  |..+..+++..+. +|++++-++.. +. ....             ........  ..+|++
T Consensus        52 l~lkpg~~VLDlGcG~--G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS--GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CCCCSSCEEEEETCTT--SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCCCCEEEEeCCcC--CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence            4689999999888533  6678888887754 89999998654 00 0000             00000001  146666


Q ss_pred             EeCCC--hh---hHHHHHHhhccCCEEEEE
Q 041355           74 FENVG--GK---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        74 ~d~~g--~~---~~~~~~~~l~~~G~~v~~   98 (180)
                      +....  .+   .+..+.+.|+|+|+++..
T Consensus       130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         130 YQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            65432  11   456677899999999766

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.25  E-value=0.015  Score=39.89  Aligned_cols=85  Identities=15%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHH----------------HHhHcCC-CccEE-E
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA----------------LKRWFPQ-GIDIY-F   74 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~----------------~~~~~~~-~~d~~-~   74 (180)
                      .+++|++||-.++  ++|.+++.+|+.-+++|++++.+++. -+-...+                .++.... .+|.| +
T Consensus       104 ~~~~g~~VlD~~a--G~G~~~l~~a~~~~~~V~avd~n~~a-~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~  180 (260)
T d2frna1         104 VAKPDELVVDMFA--GIGHLSLPIAVYGKAKVIAIEKDPYT-FKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  180 (260)
T ss_dssp             HCCTTCEEEETTC--TTTTTHHHHHHHTCCEEEEECCCHHH-HHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             hcCCccEEEECcc--eEcHHHHHHHHhCCcEEEEecCCHHH-HHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEE
Confidence            3689999998763  45777778887655699999998764 0000000                1111122 57755 4


Q ss_pred             eCC--ChhhHHHHHHhhccCCEEEEEec
Q 041355           75 ENV--GGKMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        75 d~~--g~~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +-.  +.+.+..+++.++++|.+.....
T Consensus       181 ~~p~~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         181 GYVVRTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCchHHHHHHHHhhcCCCCEEEEEec
Confidence            432  22367778888888887755443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.21  E-value=0.097  Score=32.75  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~   52 (180)
                      .|++|+|.| +|.+|+-+++.++.++.  +|+.+.+.+.
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            478999999 89999998888887764  7777766653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.18  Score=30.59  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=40.2

Q ss_pred             CCCCEEEEecCCchHHHHHH-HH---HHHcCCEEEEEeCCCCC----CcchHHHHHHhHcCC-CccEEEeC
Q 041355           15 KKGEYVYVSAASGAVGQLVG-QF---AKLAGCYVVGSAGSKEK----EEPDLDAALKRWFPQ-GIDIYFEN   76 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~i-ql---ak~~g~~vi~~~~~~~~----~~~~~~~~~~~~~~~-~~d~~~d~   76 (180)
                      +++++++|.| +|.+|.=++ .+   ++..|.+|..+.+.+.-    -+++..+.+.+.... |+.+.+++
T Consensus        35 ~~~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~  104 (137)
T d1m6ia2          35 REVKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA  104 (137)
T ss_dssp             HHCSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCC
Confidence            4578999999 799985432 23   24579999888887654    244555555554444 67777654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.09  E-value=0.046  Score=34.88  Aligned_cols=83  Identities=13%  Similarity=0.030  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------------------Ccch-HHHHHHhHcCCCccEE
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------------------EEPD-LDAALKRWFPQGIDIY   73 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~d~~   73 (180)
                      -.|++++|.|-+.-+|.=+..++...|+.|..+......                    ..++ +.+..++     .|++
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~-----aDIv  101 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD-----SDVV  101 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH-----CSEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc-----CCEE
Confidence            368999999999999998888888889988755433211                    0111 2222322     6999


Q ss_pred             EeCCChhhHHHHHHhhccCCEEEEEeccc
Q 041355           74 FENVGGKMLDAVLLNMRLRGRIAVSSIIS  102 (180)
Q Consensus        74 ~d~~g~~~~~~~~~~l~~~G~~v~~~~~~  102 (180)
                      +-++|.+.+.---..++++..++.+|...
T Consensus       102 IsavG~p~~~i~~d~ik~GavvIDvGi~~  130 (171)
T d1edza1         102 ITGVPSENYKFPTEYIKEGAVCINFACTK  130 (171)
T ss_dssp             EECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             EEccCCCccccChhhcccCceEeeccccc
Confidence            99999764321224678888888887643

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.09  E-value=0.25  Score=29.25  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=59.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C---cchHHHHHHhHcCCCccEEEeCCChh-hHHHH
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E---EPDLDAALKRWFPQGIDIYFENVGGK-MLDAV   85 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~---~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~   85 (180)
                      +.+..+|+|.|-+|..|..-.+..+.+|-+|++-+.+...    .   --+..++..+.+  ++|.-+-++... ..+.+
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~--~~d~SvIfVPp~~a~dAi   81 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHH--EVDASIIFVPAPAAADAA   81 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHS--CCSEEEECCCHHHHHHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhc--CCeEEEEeeCHHHHHHHH
Confidence            4567789999999999999999999999999987776554    1   112233333333  477777778866 67778


Q ss_pred             HHhhccCCEEEEE
Q 041355           86 LLNMRLRGRIAVS   98 (180)
Q Consensus        86 ~~~l~~~G~~v~~   98 (180)
                      +..+..+=.++.+
T Consensus        82 ~EAi~agI~liv~   94 (121)
T d1oi7a1          82 LEAAHAGIPLIVL   94 (121)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHhCCCcEEEE
Confidence            8888777666555

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.08  E-value=0.2  Score=35.10  Aligned_cols=85  Identities=18%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             cCCCCCCEEEEe-cCCchHHHHHHHHHHHcCC-EEEEEeCCCCC--------------------CcchHHHHHHhHc--C
Q 041355           12 CSPKKGEYVYVS-AASGAVGQLVGQFAKLAGC-YVVGSAGSKEK--------------------EEPDLDAALKRWF--P   67 (180)
Q Consensus        12 ~~~~~g~~vlI~-Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~--------------------~~~~~~~~~~~~~--~   67 (180)
                      ..+.+|++||=. .++|+.+   +..+ ..|+ .|+.++.++..                    -..+..+.++...  +
T Consensus       140 ~~~~~g~~VLdlf~~~G~~s---l~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFS---VAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHH  215 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHH---HHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTT
T ss_pred             HHhhCCCceeecCCCCcHHH---HHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhc
Confidence            356789999844 4444444   3333 3577 79999988765                    1123444444332  2


Q ss_pred             CCccEEE-eC--CCh-------------hhHHHHHHhhccCCEEEEEec
Q 041355           68 QGIDIYF-EN--VGG-------------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        68 ~~~d~~~-d~--~g~-------------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ..||+|+ |.  .+.             +.+..++++|+|+|.++....
T Consensus       216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3799875 42  111             134556778899999887644

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.31  Score=30.30  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=49.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCChh-hHHH---
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVGGK-MLDA---   84 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~---   84 (180)
                      +|.|.| .|.+|...++-+...|.+|++.++++++          ...+..+.++     ..|+++-|+.++ ....   
T Consensus         2 kIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~-----~~d~ii~~v~~~~~v~~v~~   75 (161)
T d1vpda2           2 KVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAE-----QCDVIITMLPNSPHVKEVAL   75 (161)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHH-----HCSEEEECCSSHHHHHHHHH
T ss_pred             EEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHh-----CCCeEEEEcCCHHHHHHHHh
Confidence            478899 9999998888777789999998887553          0011111122     368999998654 3333   


Q ss_pred             ----HHHhhccCCEEEEEec
Q 041355           85 ----VLLNMRLRGRIAVSSI  100 (180)
Q Consensus        85 ----~~~~l~~~G~~v~~~~  100 (180)
                          +...++++-.++..++
T Consensus        76 ~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          76 GENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             STTCHHHHCCTTCEEEECSC
T ss_pred             CCcchhhccCCCCEEEECCC
Confidence                3344566666666644

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.04  E-value=0.094  Score=36.69  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .++|+|.| +|..|+.++..+...|.+|.++..++.-
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            46899999 9999999888888789999998887654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.04  E-value=0.12  Score=32.80  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------CcchH-----------HHHHHh-
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------EEPDL-----------DAALKR-   64 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------~~~~~-----------~~~~~~-   64 (180)
                      +|.|.| .|=+|.++.+.+...+.+|+++-.....                      .+..+           ...+.+ 
T Consensus         2 kigING-fGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGING-FGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEEC-CcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            578998 9999999999887778888887765432                      00000           000111 


Q ss_pred             -HcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           65 -WFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        65 -~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                       +...++|+++||+|.- +.+.+...+..+.+-|.+..
T Consensus        81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSA  118 (168)
T d2g82a1          81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA  118 (168)
T ss_dssp             CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred             cccccCCceeEeccccccchHHhhhhhccccceeeecc
Confidence             1112799999999965 66667777877765555543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.98  E-value=0.11  Score=34.83  Aligned_cols=60  Identities=22%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCCCcchHHHHHH----------hHcCCCccEEEeCCChh
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKEEPDLDAALK----------RWFPQGIDIYFENVGGK   80 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~d~~g~~   80 (180)
                      .|.+|+|.| .|.||..+++++...|++|++++.+...    +.....          +...-..|+.+-|.-+.
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~----~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~  107 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAA----VSAAVAEEGADAVAPNAIYGVTCDIFAPCALGA  107 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHHHCCEECCGGGTTTCCCSEEEECSCSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHH----HHHHHHhcCCcccCCcccccccccEeccccccc
Confidence            688999999 9999999999999999999987654322    111111          11223689998887644

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.93  E-value=0.042  Score=36.39  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=27.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK   53 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~   53 (180)
                      ...++||-.|  ++.|..++.+|+.+  +.+|++++.+++.
T Consensus        55 ~kpk~ILEiG--t~~G~Sti~la~al~~~g~v~sid~~~~~   93 (214)
T d2cl5a1          55 YSPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEMNPDY   93 (214)
T ss_dssp             HCCSEEEEEC--CTTSHHHHHHHTTCCTTCEEEEEESCHHH
T ss_pred             hCCCEEEEEc--cCchhHHHHHHHhCCCccEEEEEeccHHH
Confidence            4457899998  34577778888876  5699999987654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.89  E-value=0.064  Score=34.21  Aligned_cols=46  Identities=11%  Similarity=0.039  Sum_probs=31.9

Q ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355            6 NLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus         6 ~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+|.+...--+|++|+|.| +|+++.+++..+...| +|+++.|+.++
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~k   52 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEK   52 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred             HHHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhH
Confidence            3454443335788999999 8888988776665445 88888776543

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.18  Score=34.34  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=24.8

Q ss_pred             EEEecCCchHHHHHHHHHHHcCC-EEEEEe
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGC-YVVGSA   48 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~   48 (180)
                      |||+||+|-+|..++..+...|. .|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            79999999999998888877797 687775

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.61  E-value=0.26  Score=30.33  Aligned_cols=42  Identities=17%  Similarity=0.059  Sum_probs=34.3

Q ss_pred             cCCCCCCEEEEec-CCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           12 CSPKKGEYVYVSA-ASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        12 ~~~~~g~~vlI~G-a~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+..++..++|++ ++|-+|+-+.+.+..+|.+|..+.+.+.-
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4567888888862 37899999999999999999999887643

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.36  Score=28.47  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=56.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C---cchHHHHHHhHcCCCccEEEeCCChh-hHHHH
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E---EPDLDAALKRWFPQGIDIYFENVGGK-MLDAV   85 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~---~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~   85 (180)
                      +.+..+|+|.|-+|..|..-.+..+.+|-+|++-+.+...    .   --+..++..+.+  ++|.-+-.+... ..+.+
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~--~~~~SvIfVPp~~a~dA~   80 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAAT--GATASVIYVPAPFCKDSI   80 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHH--CCCEEEECCCGGGHHHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHh--CCCeEEEeccHHHHHHHH
Confidence            3567799999999999999999999999999887776554    1   112223333323  356666666655 66777


Q ss_pred             HHhhccCCEEEEE
Q 041355           86 LLNMRLRGRIAVS   98 (180)
Q Consensus        86 ~~~l~~~G~~v~~   98 (180)
                      +..+..+=+++.+
T Consensus        81 ~EAi~agI~~iV~   93 (119)
T d2nu7a1          81 LEAIDAGIKLIIT   93 (119)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHHCCCCEEEE
Confidence            7888777555554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.45  E-value=0.16  Score=33.57  Aligned_cols=35  Identities=23%  Similarity=0.133  Sum_probs=29.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      +.-.+|+|.| +|..|+++.-.+...|.+|.++.+.
T Consensus         4 ~~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLG-SGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3445799999 8999999888888899999998875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.31  E-value=0.12  Score=34.55  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEeCCCCC---------CcchH------HHHHHhHcCC--CccEE
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CYVVGSAGSKEK---------EEPDL------DAALKRWFPQ--GIDIY   73 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g-~~vi~~~~~~~~---------~~~~~------~~~~~~~~~~--~~d~~   73 (180)
                      ..++||++||=.|++  .|..+..+++... ..|++++-++..         .....      ..........  .+|++
T Consensus        70 l~ikpG~~VLDlGcG--sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          70 MPIKRDSKILYLGAS--AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CCCCTTCEEEEESCC--SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCCCEEEEeCEE--cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            457999999999854  4778888888753 499999998653         00000      0000111112  45666


Q ss_pred             EeCCCh--h---hHHHHHHhhccCCEEEEE
Q 041355           74 FENVGG--K---MLDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        74 ~d~~g~--~---~~~~~~~~l~~~G~~v~~   98 (180)
                      +.....  +   .+..+...|+|+|.++..
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEE
Confidence            655432  1   356677889999998765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.29  E-value=0.097  Score=33.83  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC--------Ccc------hHHHH------HHhHcCCCccEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK--------EEP------DLDAA------LKRWFPQGIDIYFENVG   78 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~--------~~~------~~~~~------~~~~~~~~~d~~~d~~g   78 (180)
                      +|.|.| +|..|.+...++-..|-+|....++++.        ..+      .+.+.      +.+.. .+.|+++-++.
T Consensus         9 KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~-~~ad~iiiavP   86 (189)
T d1n1ea2           9 KAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-NGAEIILFVIP   86 (189)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-TTCSCEEECSC
T ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc-CCCCEEEEcCc
Confidence            699999 8999999887777667788887775432        000      00001      11111 14789999998


Q ss_pred             hhhHHHHHHhh
Q 041355           79 GKMLDAVLLNM   89 (180)
Q Consensus        79 ~~~~~~~~~~l   89 (180)
                      ...+...++.+
T Consensus        87 s~~~~~~~~~~   97 (189)
T d1n1ea2          87 TQFLRGFFEKS   97 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87666665443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.17  E-value=0.038  Score=36.62  Aligned_cols=83  Identities=11%  Similarity=0.082  Sum_probs=51.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHH---cCCEEEEEeCCCCCCcchHHH-----------------HHHhHcCCCccEE
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKL---AGCYVVGSAGSKEKEEPDLDA-----------------ALKRWFPQGIDIY   73 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~---~g~~vi~~~~~~~~~~~~~~~-----------------~~~~~~~~~~d~~   73 (180)
                      ++++.+||=.| || .|..+..+++.   -+++|++++.+++-  -+...                 .......+.+|++
T Consensus        37 ~~~~~~vLDlG-CG-tG~~~~~l~~~~~~~~~~v~giD~S~~m--l~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i  112 (225)
T d1im8a_          37 VTADSNVYDLG-CS-RGAATLSARRNINQPNVKIIGIDNSQPM--VERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV  112 (225)
T ss_dssp             CCTTCEEEEES-CT-TCHHHHHHHHTCCCSSCEEEEECSCHHH--HHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEE
T ss_pred             cCCCCEEEEec-cc-hhhHHHHHHHhhcCCCCceEEeCCCHHH--HHHHHHHhHhhcccchhhhccchhhccccccceee
Confidence            68899999888 43 46667777765   47799999997653  00000                 0111111245665


Q ss_pred             EeCCCh---------hhHHHHHHhhccCCEEEEEec
Q 041355           74 FENVGG---------KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        74 ~d~~g~---------~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +-+..-         ..+..+.+.|+|+|.++....
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            543221         146778889999999987643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.16  E-value=0.099  Score=34.82  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=27.3

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      |+|.| +|+.|+++...+...|.+|+++.+.+.
T Consensus         5 ViIIG-aG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIG-GGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999 899999887777778999999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.16  E-value=0.1  Score=34.07  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=28.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -|+|.| +|+.|+.+...+..+|.+|+++...+.
T Consensus         5 DvvVIG-gGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           5 DVVIIG-GGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378889 899999999999999999999887644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.16  E-value=0.094  Score=31.51  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=46.3

Q ss_pred             CEEEEecCCchHHHHHHHHHH-HcCCEEEEEeCCCCC------------CcchHHHHHHhHcCCCccEEEeCCChhhHHH
Q 041355           18 EYVYVSAASGAVGQLVGQFAK-LAGCYVVGSAGSKEK------------EEPDLDAALKRWFPQGIDIYFENVGGKMLDA   84 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak-~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~   84 (180)
                      .+|+|+| +|..|.+++...+ ..++++++....+..            ...+    +.+.....+++++-|+.....+.
T Consensus         4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~----l~~~~~~~i~iai~~i~~~~~~~   78 (126)
T d2dt5a2           4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDL----LPQRVPGRIEIALLTVPREAAQK   78 (126)
T ss_dssp             EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGG----HHHHSTTTCCEEEECSCHHHHHH
T ss_pred             ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHH----HHHHHhhcccEEEEeCCHHHHHH
Confidence            4799999 8999987665433 346788876665554            1222    33333446789999998877777


Q ss_pred             HHHhhccCC
Q 041355           85 VLLNMRLRG   93 (180)
Q Consensus        85 ~~~~l~~~G   93 (180)
                      +...|...|
T Consensus        79 I~d~l~~~g   87 (126)
T d2dt5a2          79 AADLLVAAG   87 (126)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            766555444

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.11  Score=35.48  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--------CcchHH-HHHHh--HcCCCccEEEeCCChhh
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--------EEPDLD-AALKR--WFPQGIDIYFENVGGKM   81 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--------~~~~~~-~~~~~--~~~~~~d~~~d~~g~~~   81 (180)
                      ..++.+||=.| +| .|..+..+++.. +.++++++.++..        ....+. ....+  ...+.||+++....-..
T Consensus        82 ~~~~~~iLDiG-cG-~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          82 DDKATAVLDIG-CG-EGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             CTTCCEEEEET-CT-TSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCCCCEEEEeC-CC-CcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            45778898888 33 477777788765 6799999987543        000000 00000  11236899886554447


Q ss_pred             HHHHHHhhccCCEEEEEec
Q 041355           82 LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~~~  100 (180)
                      +..+.++|+|+|.++....
T Consensus       160 ~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEee
Confidence            8888999999999988753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.04  E-value=0.11  Score=32.79  Aligned_cols=28  Identities=18%  Similarity=0.152  Sum_probs=24.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEE
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYV   44 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~v   44 (180)
                      .+++|+|.| +|.+|+-++..++.+|.++
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v   29 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRASGWEG   29 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCCS
T ss_pred             CCCCEEEEC-CcHHHHHHHHHHHHcCCce
Confidence            578999999 8999999999999998753

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.04  E-value=0.14  Score=36.07  Aligned_cols=84  Identities=18%  Similarity=0.059  Sum_probs=50.9

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-------------------CcchHHHHHHhH--cCCCcc
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-------------------EEPDLDAALKRW--FPQGID   71 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-------------------~~~~~~~~~~~~--~~~~~d   71 (180)
                      +++|++||=.+  +++|..++.+++. |+ +|++++.++..                   ...+..+.+...  .+..||
T Consensus       143 ~~~g~~VLDl~--~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         143 VQPGDRVLDVF--TYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CCTTCEEEETT--CTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCeeeccc--Ccccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            67899998654  2345555555544 66 89999998775                   112333333332  233899


Q ss_pred             EEE-eCC--Ch--h-----------hHHHHHHhhccCCEEEEEec
Q 041355           72 IYF-ENV--GG--K-----------MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        72 ~~~-d~~--g~--~-----------~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +|+ |.-  +.  .           .+..++++|+|+|.++....
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            876 322  11  0           23455678899999988754

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.95  E-value=0.3  Score=32.61  Aligned_cols=37  Identities=30%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHH-HHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFA-KLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqla-k~~g~~vi~~~~~~~   52 (180)
                      -.|.+|+|.| .|-||..+.+.+ +..|++|+++..+..
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~~G   66 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRG   66 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEETTE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecCCC
Confidence            3688999999 999999988877 678999998876543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.91  E-value=0.41  Score=30.13  Aligned_cols=37  Identities=27%  Similarity=0.162  Sum_probs=23.3

Q ss_pred             CCCCCCEEE-EecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           13 SPKKGEYVY-VSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        13 ~~~~g~~vl-I~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+.+|.+|| +.+|+|.+|+   . |...|++|++++.++..
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga~vv~vD~~~~a   75 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---E-AASEGWEAVLVEKDPEA   75 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---H-HHHTTCEEEEECCCHHH
T ss_pred             cccCCCeEEEeccccchhhh---h-hhhccchhhhcccCHHH
Confidence            467788887 4444555554   3 33468898887666554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=91.89  E-value=0.21  Score=31.24  Aligned_cols=127  Identities=12%  Similarity=0.052  Sum_probs=64.8

Q ss_pred             EEEEecCCchHHHH-HHHHHHHc-CCEEEEEeCCCCCCcchHHH---------HHHhHcCCCccEEEeCCChh-hHHHHH
Q 041355           19 YVYVSAASGAVGQL-VGQFAKLA-GCYVVGSAGSKEKEEPDLDA---------ALKRWFPQGIDIYFENVGGK-MLDAVL   86 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~-~iqlak~~-g~~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~~d~~g~~-~~~~~~   86 (180)
                      +|.|.| +|..|.- .+...+.. +.+++++++++++ ...+.+         ...+....++|+++-|+... ....+.
T Consensus         3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~   80 (167)
T d1xeaa1           3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKV-LGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA   80 (167)
T ss_dssp             EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHH-HHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHhcccccccccHHHhcccccceecccccccccccccc
Confidence            578999 8888864 45566555 4476644443222 011111         11122222689999998876 666677


Q ss_pred             HhhccCCEEEEEeccccccCCCCccccchHHHhh-cCcEE-EeeeccchHHHHHHHHHHHHHHHHCCCcccee
Q 041355           87 LNMRLRGRIAVSSIISQYNLEKPEGVHNLEQLIG-KRIRL-EGFLAGDYYHLYLKFLELVIPAIREGKMVYVE  157 (180)
Q Consensus        87 ~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  157 (180)
                      .++..+ .-+.+.-+...+.   .....+..... ++..+ .++  ..    ....+.++.+.+..|++....
T Consensus        81 ~al~~g-k~V~~EKP~~~~~---~e~~~l~~~a~~~~~~~~vg~--~r----~~~~~~~~~~~~~~G~ig~~~  143 (167)
T d1xeaa1          81 FFLHLG-IPTFVDKPLAASA---QECENLYELAEKHHQPLYVGF--NG----FDAMVQDWLQVAAAGKLPTHI  143 (167)
T ss_dssp             HHHHTT-CCEEEESCSCSSH---HHHHHHHHHHHHTTCCEEEEC--GT----HHHHHHHHHHHHHHTCCCHHH
T ss_pred             cccccc-cccccCCCCcCCH---HHHHHHHHHHHHcCCEEEEEe--Cc----CCHHHHHHHHHhhcCCCCcEE
Confidence            777654 4456644332110   00011112222 22222 232  22    233466777888888887543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.89  E-value=0.37  Score=29.87  Aligned_cols=37  Identities=24%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      ++-.+|.|.| +|.+|..+..++...+. +++..+..++
T Consensus         5 ~k~~KI~IIG-aG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           5 QRRKKVAMIG-SGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             SCCCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            4567899999 59999988888887786 8877776554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.89  E-value=0.058  Score=34.94  Aligned_cols=84  Identities=14%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-C-cchHHH------------HHHhH-cCCCccEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-E-EPDLDA------------ALKRW-FPQGIDIYFENVG   78 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~-~~~~~~------------~~~~~-~~~~~d~~~d~~g   78 (180)
                      +++| +||=.| +| .|..+.-+++ .|++|++++.+++. . ......            .+.+. ..+.||+|+...-
T Consensus        29 ~~~g-rvLDiG-cG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~  104 (198)
T d2i6ga1          29 VAPG-RTLDLG-CG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVV  104 (198)
T ss_dssp             SCSC-EEEEET-CT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESC
T ss_pred             CCCC-cEEEEC-CC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeee
Confidence            4555 899888 54 7887777776 58999999887653 0 000000            00110 1236888875321


Q ss_pred             h-----h----hHHHHHHhhccCCEEEEEecc
Q 041355           79 G-----K----MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        79 ~-----~----~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      -     +    .+..+.++|+|+|.++.....
T Consensus       105 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         105 MMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             GGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            1     1    455666789999998876544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.095  Score=33.15  Aligned_cols=31  Identities=16%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .|+|.| +|+.|+.+...+...|.+|..+.+.
T Consensus         3 DViIIG-gGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVG-SGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            478999 8999999999999999998888754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.81  E-value=0.11  Score=34.37  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=27.6

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      +|+|.| +|+.|+.+...++..|. +|.++..++.
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            589999 89999998888888897 6888877643

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=1.5  Score=30.90  Aligned_cols=43  Identities=19%  Similarity=0.119  Sum_probs=31.4

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +...++++..|+... +|-.|.+....++.+|++.+++.+....
T Consensus        90 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~Gi~~~iv~p~~~~  132 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEKMS  132 (355)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSCCC
T ss_pred             HcCCcccCceEEEec-ccchhhHHHHHHHhccCCeEEEeeccch
Confidence            344566777665544 8999999999999999976666655443

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.70  E-value=0.55  Score=29.61  Aligned_cols=80  Identities=21%  Similarity=0.291  Sum_probs=50.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHc---CCEEEEEeCCCCC-------------------------------------CcchH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA---GCYVVGSAGSKEK-------------------------------------EEPDL   58 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~---g~~vi~~~~~~~~-------------------------------------~~~~~   58 (180)
                      +|.|.| .|=+|.++.+.+-..   +.+|+++-.....                                     ...+.
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999 999999988877542   4688877655322                                     00000


Q ss_pred             HHHHHhHcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           59 DAALKRWFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        59 ~~~~~~~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                       +.+. +..-++|+++||+|.- +...+...+..+.+-+.+..+
T Consensus        81 -~~i~-W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          81 -SKLP-WKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             -GGSC-HHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             -hhCC-ccccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence             0110 0011699999999965 677777788777655665433

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.62  E-value=0.12  Score=34.63  Aligned_cols=33  Identities=18%  Similarity=0.106  Sum_probs=28.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+|.| +|+.|+++.-.+...|.+|.++.+.+.
T Consensus         6 DViIIG-aG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIG-AGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            378999 899999988888888999999988754

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.62  E-value=0.85  Score=31.47  Aligned_cols=41  Identities=17%  Similarity=0.137  Sum_probs=29.8

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ...+.+++.|+... +|.-|+++.-.++.+|++.+++.+...
T Consensus        55 ~g~~~~~~~vv~~S-sGN~g~a~A~~a~~~G~~~~i~~p~~~   95 (310)
T d1y7la1          55 DGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETM   95 (310)
T ss_dssp             TTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTS
T ss_pred             cCCCCCCceeeeec-CCCchHHHHHHHHHhhccccccchhhh
Confidence            34457777665555 999999999999999996555555443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.58  E-value=0.18  Score=34.91  Aligned_cols=83  Identities=17%  Similarity=0.095  Sum_probs=53.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------------CcchHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      ..-++|||.|+.+  |..+-.++++.+. +|..+.-.++-                      .-.|-.+.+++..++.+|
T Consensus        79 ~~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGD--GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSS--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCc--hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            4457899998544  6667788888776 67777665432                      112334455554445899


Q ss_pred             EE-EeCCCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IY-FENVGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~-~d~~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +| +|+...          +-+..+.+.|+++|.++.-.
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            76 454431          13577788999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.2  Score=34.41  Aligned_cols=37  Identities=22%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++..+|+|+| +|..|+.+...+...|.+|.+...++.
T Consensus         3 ~~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           3 KKTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             SCCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4456799999 899999999999889999988876653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.29  E-value=0.16  Score=36.49  Aligned_cols=78  Identities=21%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             ecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------C-----------------------cchHHHHHHhHcCC
Q 041355           23 SAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------E-----------------------EPDLDAALKRWFPQ   68 (180)
Q Consensus        23 ~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------~-----------------------~~~~~~~~~~~~~~   68 (180)
                      .-+.+++|..++++++..|+ +|++.+-++..          +                       ..+. ..+....+.
T Consensus        50 LD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da-~~~~~~~~~  128 (375)
T d2dula1          50 LDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-NRLMAERHR  128 (375)
T ss_dssp             EESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-HHHHHHSTT
T ss_pred             EEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh-hhhhHhhcC
Confidence            34477789999999998888 88888876553          0                       0011 112222233


Q ss_pred             CccEE-EeCCChh--hHHHHHHhhccCCEEEEEecc
Q 041355           69 GIDIY-FENVGGK--MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        69 ~~d~~-~d~~g~~--~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      .||+| +|..|..  .++.+++.++.+|-+..+.+.
T Consensus       129 ~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         129 YFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             CEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            79976 9998865  788999999999888777543

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.27  E-value=0.55  Score=28.09  Aligned_cols=83  Identities=17%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----C---cchHHHHHHhHcCCCccEEEeCCChh-hHHHH
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----E---EPDLDAALKRWFPQGIDIYFENVGGK-MLDAV   85 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----~---~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~   85 (180)
                      +.+..+|+|.|-+|..|..-.+..+.+|-+|++-+.+...    .   --+..++..+.+  ++|.-+-++... ..+.+
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~--~~daSvIfVPp~~a~dAi   89 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQT--GATASVIYVPPPFAAAAI   89 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHH--CCCEEEECCCHHHHHHHH
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhc--CCcEEEEecCHHHHHHHH
Confidence            5778899999999999999999999999999987766554    1   112223333333  467777778766 66777


Q ss_pred             HHhhccCCEEEEE
Q 041355           86 LLNMRLRGRIAVS   98 (180)
Q Consensus        86 ~~~l~~~G~~v~~   98 (180)
                      +..+..+=.++.+
T Consensus        90 ~EAi~agI~liV~  102 (130)
T d1euca1          90 NEAIDAEVPLVVC  102 (130)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHhCCCCEEEE
Confidence            7888777555554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.16  E-value=0.16  Score=35.28  Aligned_cols=33  Identities=18%  Similarity=0.019  Sum_probs=28.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+|+| +|+.|++++..++..|.+|.+....++
T Consensus         9 dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVG-AGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            588999 899999999999999999888887644

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=91.14  E-value=0.95  Score=28.44  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=52.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC------------------------------Ccch--H--HHHHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK------------------------------EEPD--L--DAALK   63 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~------------------------------~~~~--~--~~~~~   63 (180)
                      +|.|.| .|-+|.++.+.+-.. ..+++++-.....                              +...  +  ...+.
T Consensus         3 kIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            688999 999999988877655 4688877664322                              0000  0  00011


Q ss_pred             hH-cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           64 RW-FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        64 ~~-~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +. ... ++|+++||+|.- ....+...+..+.+-+.+..+
T Consensus        82 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP  122 (169)
T d1u8fo1          82 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  122 (169)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             hCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccc
Confidence            11 123 799999999965 666666778877766666543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.12  E-value=0.22  Score=33.37  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHH-HHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFA-KLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqla-k~~g~~vi~~~~~~~   52 (180)
                      .|.+|+|.| .|.||..+.+++ +..|++|+++..++.
T Consensus        31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~~g   67 (239)
T d1gtma1          31 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDSKG   67 (239)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccccc
Confidence            689999999 999999999876 467999998877654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.09  E-value=0.09  Score=37.02  Aligned_cols=31  Identities=13%  Similarity=0.101  Sum_probs=24.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC--EEEEEe
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC--YVVGSA   48 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~   48 (180)
                      .+|||+||+|-+|..++..+...|.  +|++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            4799999999999988888876675  566554

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.08  E-value=0.82  Score=28.65  Aligned_cols=82  Identities=16%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC------------------------------CcchH----HHHHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK------------------------------EEPDL----DAALK   63 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~------------------------------~~~~~----~~~~~   63 (180)
                      +|.|.| .|-+|.++...+... ..+|+++-.+...                              +....    ...+.
T Consensus         2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            578988 999999988877654 4577777654222                              00000    00000


Q ss_pred             h--HcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           64 R--WFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        64 ~--~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +  +...++|+++||+|.- +.+.+...+..+.+-|.+..+
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  121 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  121 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecc
Confidence            0  1111799999999965 666677788877666666443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.96  E-value=0.18  Score=33.03  Aligned_cols=33  Identities=15%  Similarity=0.106  Sum_probs=28.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|+|.| +|+.|+.+...+..+|.+|..+...+.
T Consensus         7 DviVIG-~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIG-GGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378899 899999988888888999999987655

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.94  E-value=0.12  Score=34.91  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +|+|.| +|..|+.+...+...|.+|.++..++.
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVG-GGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            488999 899999998888888999998887654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.93  E-value=0.34  Score=28.50  Aligned_cols=80  Identities=14%  Similarity=0.056  Sum_probs=49.7

Q ss_pred             CEEEEecCC---chHHHHHHHHHHHcCCEEEEEeCCCCC-CcchHHHHHHhHcCCCccEEEeCCChhhHHHHHH-hhccC
Q 041355           18 EYVYVSAAS---GAVGQLVGQFAKLAGCYVVGSAGSKEK-EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLL-NMRLR   92 (180)
Q Consensus        18 ~~vlI~Ga~---g~vG~~~iqlak~~g~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~-~l~~~   92 (180)
                      ++|.|.|++   +..|...++.++..|++|+.+....+. ........+.+ .+..+|+++-++..+.....++ +.+.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~-lp~~~D~vvi~vp~~~~~~~l~~~~~~g   80 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRE-LPKDVDVIVFVVPPKVGLQVAKEAVEAG   80 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG-SCTTCCEEEECSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchh-ccccceEEEEEeCHHHHHHHHHHHHhcC
Confidence            478899977   557888999999999998887655433 11111111111 2346899999999875555554 44444


Q ss_pred             CEEEEE
Q 041355           93 GRIAVS   98 (180)
Q Consensus        93 G~~v~~   98 (180)
                      -+.+.+
T Consensus        81 ~k~v~~   86 (116)
T d1y81a1          81 FKKLWF   86 (116)
T ss_dssp             CCEEEE
T ss_pred             CceEEe
Confidence            344433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.88  E-value=0.29  Score=27.77  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             CCCCCEEEEecCCchHHHHH-HHHHHHcCCEEEEEeCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLV-GQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~-iqlak~~g~~vi~~~~~~   51 (180)
                      .+..+++.+.| -|++|+.+ +++++..|+.|.+.+...
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            45667899999 88889776 799999999999988753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.16  Score=33.07  Aligned_cols=30  Identities=13%  Similarity=-0.036  Sum_probs=26.8

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      |+|.| +|+.|+.+...+..+|.+|..+.+.
T Consensus         5 vvVIG-~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIG-GGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEC-CSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEEecc
Confidence            78899 8999999999999999999888764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.59  E-value=0.2  Score=32.94  Aligned_cols=33  Identities=24%  Similarity=0.033  Sum_probs=28.7

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -|+|.| +||.|+.+...+..+|.+|..+...+.
T Consensus         8 DviIIG-~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           8 DVVVLG-GGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            378889 899999999999999999999987654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.55  E-value=0.16  Score=33.13  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .++|.| +|+.|+.+...+..+|.+|..+.+.
T Consensus         7 DlvVIG-~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIG-GGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEecC
Confidence            378889 8999999999999999999988764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.53  E-value=0.2  Score=32.52  Aligned_cols=31  Identities=19%  Similarity=0.100  Sum_probs=26.9

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++|.| +|+.|+.+...|...|.+|.++.+..
T Consensus         6 viVIG-~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVG-AGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            67889 89999999999999999988887653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.35  E-value=0.031  Score=37.61  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC---CcchHH----------HHHHhH-cCCCccEEEeCCCh-
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK---EEPDLD----------AALKRW-FPQGIDIYFENVGG-   79 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~---~~~~~~----------~~~~~~-~~~~~d~~~d~~g~-   79 (180)
                      .++.+||=.| || .|..+..+++ .|.+|++++.+++.   ..+...          ..+.+. .++.||+|+...+. 
T Consensus        36 ~~~~~vLDiG-CG-~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          36 LVFDDYLDLA-CG-TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDST  112 (246)
T ss_dssp             CCTTEEEEET-CT-TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred             CCCCeEEEEe-Cc-CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeee
Confidence            4457899888 44 5667777766 47899999988653   000000          011111 13479998853221 


Q ss_pred             -------h---hHHHHHHhhccCCEEEE
Q 041355           80 -------K---MLDAVLLNMRLRGRIAV   97 (180)
Q Consensus        80 -------~---~~~~~~~~l~~~G~~v~   97 (180)
                             +   .+..+.+.|+|+|.++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         113 NYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence                   1   35566678899999875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=1.2  Score=27.41  Aligned_cols=80  Identities=13%  Similarity=0.021  Sum_probs=48.4

Q ss_pred             EEEEecCCchHHHH-HHHHHHHc-CCEEEEEeCCCCCCcchHHH--------HHHhHcCCCccEEEeCCChh-hHHHHHH
Q 041355           19 YVYVSAASGAVGQL-VGQFAKLA-GCYVVGSAGSKEKEEPDLDA--------ALKRWFPQGIDIYFENVGGK-MLDAVLL   87 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~-~iqlak~~-g~~vi~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~d~~g~~-~~~~~~~   87 (180)
                      +|.|.| +|.+|.- .+...+.. +++++++++.+......+.+        .+.+.. ..+|+++.|+... ....+..
T Consensus         3 ri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~~D~V~I~tp~~~h~~~~~~   80 (164)
T d1tlta1           3 RIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA-ASCDAVFVHSSTASHFDVVST   80 (164)
T ss_dssp             EEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH-TTCSEEEECSCTTHHHHHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhh-hhcccccccccchhccccccc
Confidence            578999 8888864 56666544 67888888776541111111        111111 2589999988766 5666666


Q ss_pred             hhccCCEEEEEecc
Q 041355           88 NMRLRGRIAVSSII  101 (180)
Q Consensus        88 ~l~~~G~~v~~~~~  101 (180)
                      ++..+ .-+.+.-+
T Consensus        81 al~~g-k~V~~EKP   93 (164)
T d1tlta1          81 LLNAG-VHVCVDKP   93 (164)
T ss_dssp             HHHTT-CEEEEESS
T ss_pred             ccccc-ceeecccc
Confidence            66554 55666543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.16  Score=32.36  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           17 GEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      +..|+|.| +|+.|+.+...+..+|.+|+.+.+.+
T Consensus         5 ~~dVvIIG-GGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILG-SGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45699999 89999999999988999888886543

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.07  E-value=0.81  Score=28.86  Aligned_cols=81  Identities=15%  Similarity=0.067  Sum_probs=48.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC---CEEEEEeCCCCC----------------------CcchH--H----------HH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG---CYVVGSAGSKEK----------------------EEPDL--D----------AA   61 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g---~~vi~~~~~~~~----------------------~~~~~--~----------~~   61 (180)
                      +|.|.| -|=+|.++.+.+....   .+|+++-.....                      .+...  .          ..
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            578888 9999998888665432   467776655332                      00000  0          00


Q ss_pred             HHh--HcCCCccEEEeCCChh-hHHHHHHhhccCCEEEEEec
Q 041355           62 LKR--WFPQGIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        62 ~~~--~~~~~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +.+  +..-++|+++||+|.- ....+...|..+.+-|.+..
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSA  122 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA  122 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESS
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeec
Confidence            000  1011699999999965 66667778877765555543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.06  E-value=0.16  Score=35.43  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=26.5

Q ss_pred             EEEEecCCchHHHHHHHHHH-----HcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAK-----LAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak-----~~g~~vi~~~~~~~~   53 (180)
                      .|+|.| +|++|+++...+.     ..|.+|.++.+.+..
T Consensus         9 DV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            489999 8999988776663     468999988876543

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=89.99  E-value=0.76  Score=29.03  Aligned_cols=82  Identities=10%  Similarity=0.080  Sum_probs=50.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHc----CCEEEEEeCCCCC-----------------------------Ccch--H--HHH
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA----GCYVVGSAGSKEK-----------------------------EEPD--L--DAA   61 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~----g~~vi~~~~~~~~-----------------------------~~~~--~--~~~   61 (180)
                      +|.|.| .|=+|.++...+-..    ..+|+++-.....                             +...  +  ...
T Consensus         3 kigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            578998 999999888766432    3467766654322                             0000  0  001


Q ss_pred             HHhH-cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           62 LKRW-FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        62 ~~~~-~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      +.+. ... ++|+++||+|.- ....+...|..+.+-|.+..+
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  124 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP  124 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecC
Confidence            1111 123 899999999964 666777888888776666543

>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: LD-carboxypeptidase A N-terminal domain-like
domain: LD-carboxypeptidase A, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.77  E-value=0.15  Score=32.19  Aligned_cols=68  Identities=13%  Similarity=0.014  Sum_probs=45.9

Q ss_pred             CCC-CCEEEEecCCchHH----HHHHHHHHHcCCEEEEEeCCCCC------CcchHHHHHHhHcCC-CccEEEeCCChhh
Q 041355           14 PKK-GEYVYVSAASGAVG----QLVGQFAKLAGCYVVGSAGSKEK------EEPDLDAALKRWFPQ-GIDIYFENVGGKM   81 (180)
Q Consensus        14 ~~~-g~~vlI~Ga~g~vG----~~~iqlak~~g~~vi~~~~~~~~------~~~~~~~~~~~~~~~-~~d~~~d~~g~~~   81 (180)
                      ++| |++|.|+.=++++-    ..+++.++.+|++|..-..-..+      .+++-.+.+.+.... .++.|+..-|+..
T Consensus         9 ~~P~Gd~I~iiAPS~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~dp~i~aI~~~rGGyG   88 (167)
T d1zl0a2           9 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYG   88 (167)
T ss_dssp             CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSC
T ss_pred             CCCCCCEEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEECcccccccCcccCCHHHHHHHHHHhccCcCCCEEEECccHHH
Confidence            466 89998876455553    45677788889988764333222      445556667776554 8999998888763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=0.22  Score=34.35  Aligned_cols=34  Identities=15%  Similarity=0.035  Sum_probs=29.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .|+|.| +|..|+.++..+...|.+|.++..++.-
T Consensus         3 dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           3 DYIIVG-SGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             cEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            478999 9999999998888889999988887654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.61  E-value=0.86  Score=28.16  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCChh-hHHHH-
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVGGK-MLDAV-   85 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g~~-~~~~~-   85 (180)
                      .+|.+.| .|-+|...+.-+...|.+|.+.++++++          ...+..+.+     ...|+++-|+... ..... 
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~-----~~~diii~~v~~~~~~~~v~   75 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAV-----QGADVVISMLPASQHVEGLY   75 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHH-----TSCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhc-----cccCeeeecccchhhHHHHH
Confidence            3688899 9999998777666679999988876543          001111111     1367888887754 33322 


Q ss_pred             ------HHhhccCCEEEEEec
Q 041355           86 ------LLNMRLRGRIAVSSI  100 (180)
Q Consensus        86 ------~~~l~~~G~~v~~~~  100 (180)
                            ...+.++-.++..++
T Consensus        76 ~~~~~~~~~l~~g~iiid~st   96 (162)
T d3cuma2          76 LDDDGLLAHIAPGTLVLECST   96 (162)
T ss_dssp             HSTTCHHHHSCTTCEEEECSC
T ss_pred             hccccccccCCCCCEEEECCC
Confidence                  334555556665544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.57  E-value=0.49  Score=31.09  Aligned_cols=80  Identities=5%  Similarity=-0.012  Sum_probs=49.3

Q ss_pred             EEEEecCCchHHH-HHHHHHHHc-CCEEEEEeCCCCCCcchHH-------------HHHHhHcCC-CccEEEeCCChh-h
Q 041355           19 YVYVSAASGAVGQ-LVGQFAKLA-GCYVVGSAGSKEKEEPDLD-------------AALKRWFPQ-GIDIYFENVGGK-M   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~-~~iqlak~~-g~~vi~~~~~~~~~~~~~~-------------~~~~~~~~~-~~d~~~d~~g~~-~   81 (180)
                      +|.|.| +|..|. ..+...+.. +++|+++++.+......+.             ..+.+.... ++|+++-|+... .
T Consensus        35 riaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          35 GYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             EEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence            678999 888885 344444444 6799988876543111111             112333333 799999998876 6


Q ss_pred             HHHHHHhhccCCEEEEEec
Q 041355           82 LDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~~~  100 (180)
                      ...+..++.. |.-+.+.-
T Consensus       114 ~~~~~~al~~-gk~v~~EK  131 (221)
T d1h6da1         114 AEFAIRAFKA-GKHVMCEK  131 (221)
T ss_dssp             HHHHHHHHHT-TCEEEECS
T ss_pred             hhHHHHhhhc-chhhhcCC
Confidence            6777777754 56666643

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.56  E-value=2.1  Score=29.10  Aligned_cols=42  Identities=14%  Similarity=0.046  Sum_probs=30.2

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      +...+++|..++..+ +|.-|.++.-.++.+|.+++++.....
T Consensus        54 ~~g~~~~~~~vv~as-sGn~g~a~A~~a~~~g~~~~i~~p~~~   95 (302)
T d1fcja_          54 KRGVLKPGVELVEPT-NGNTGIALAYVAAARGYKLTLTMPETM   95 (302)
T ss_dssp             HHTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTS
T ss_pred             HcCCCCCCceEEEec-cccchhHHHHHHHHhccCCceEEeecC
Confidence            445667777655444 899999999999999996655555444

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.24  Score=32.23  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=28.2

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      |+|.| +|..|+.++..+...|.+|.++.+.+.-
T Consensus         8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            78899 9999999888887889999999887643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.53  E-value=0.25  Score=34.55  Aligned_cols=82  Identities=11%  Similarity=0.053  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------------CcchHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      ...++|||.|+.  -|..+-.++|+... +|.++.-.++-                      .-.|..+.+++ ++..+|
T Consensus       105 ~~pk~VLIiGgG--~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIGGG--DGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFD  181 (312)
T ss_dssp             SSCCEEEEESCT--TSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEE
T ss_pred             CCCCeEEEeCCC--chHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCC
Confidence            445789999843  46666677887775 67776665432                      11233444543 455899


Q ss_pred             EEE-eCCCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYF-ENVGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~-d~~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+ |....          +-+..+.+.|+++|.++.-+
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            975 33221          12566778999999998764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.50  E-value=0.18  Score=34.27  Aligned_cols=33  Identities=21%  Similarity=0.151  Sum_probs=26.9

Q ss_pred             EEEEecCCchHHHHHH-HHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVG-QFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~i-qlak~~g~~vi~~~~~~~   52 (180)
                      .|+|.| +|+.|+.+. .+++..|.+|.++...+.
T Consensus        35 DViVIG-aGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVG-AGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            388999 899998765 456767999999998764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=1.2  Score=29.19  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             CCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           25 ASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        25 a~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      .+|-.|.+..+.+..+|++|..+..+...
T Consensus        30 SSGk~G~aiA~~~~~~Ga~V~li~g~~~~   58 (223)
T d1u7za_          30 SSGKMGFAIAAAAARRGANVTLVSGPVSL   58 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred             CcHHHHHHHHHHHHHcCCchhhhhccccc
Confidence            36778899999999999999988886553

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.42  E-value=0.33  Score=31.75  Aligned_cols=35  Identities=17%  Similarity=0.014  Sum_probs=27.1

Q ss_pred             CEEEEecCCchHHHHHHHHHHH--cCCEEEEEeCCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKL--AGCYVVGSAGSKEK   53 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~--~g~~vi~~~~~~~~   53 (180)
                      .+|+|.| +|+.|+.++..++.  .|.+|.+....+.-
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4799999 99999998876543  47789888777553

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.32  E-value=0.22  Score=31.81  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=26.9

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      .+|+|.| +|+.|+.+...+...|.+++++.+.
T Consensus         6 ~~VvIIG-gGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVG-SGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHcCCcEEEEEee
Confidence            4689999 8999999888888889988877644

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=0.17  Score=34.50  Aligned_cols=33  Identities=9%  Similarity=-0.018  Sum_probs=23.7

Q ss_pred             CCccEEEeCCC-----h--hhHHHHHHhhccCCEEEEEec
Q 041355           68 QGIDIYFENVG-----G--KMLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        68 ~~~d~~~d~~g-----~--~~~~~~~~~l~~~G~~v~~~~  100 (180)
                      +.||+|+-+-.     .  ..+..+.++|+|+|.++.+..
T Consensus       122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            37999876432     1  267788899999998877643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.07  E-value=0.15  Score=35.70  Aligned_cols=37  Identities=35%  Similarity=0.265  Sum_probs=27.4

Q ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355           13 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus        13 ~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      .+.+|++||-.| +|. |.+++.+|+ .|+ +|+++..++.
T Consensus        30 ~~~~~~~VLDiG-cG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          30 HLFKDKVVLDVG-SGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHTTCEEEEET-CTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             ccCCcCEEEEEe-cCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            356899999888 553 777776666 576 8999987653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=89.02  E-value=0.23  Score=34.82  Aligned_cols=84  Identities=20%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------------------CcchHHHHHHhHc--CCCccEE
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------------EEPDLDAALKRWF--PQGIDIY   73 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------------------~~~~~~~~~~~~~--~~~~d~~   73 (180)
                      ..+|++||=.+ +| +|..++++++ .+.+|++++.++..                  ...+..+.++...  ++.||+|
T Consensus       143 ~~~g~rVLDl~-~g-tG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         143 RFRGERALDVF-SY-AGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             GCCEEEEEEET-CT-TTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             HhCCCeeeccC-CC-CcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            34688888554 22 2444556664 34589999998765                  1123333333322  2379987


Q ss_pred             E-eC--CC--hh-----------hHHHHHHhhccCCEEEEEec
Q 041355           74 F-EN--VG--GK-----------MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        74 ~-d~--~g--~~-----------~~~~~~~~l~~~G~~v~~~~  100 (180)
                      + |.  .+  ..           .+..++++|+|+|.++....
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            6 32  21  11           23456678999999988744

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.31  Score=31.57  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      ++|.| +|+.|+.+...+..+|.+|.++....
T Consensus         6 viIIG-~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIG-GGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            67888 89999999999999999999887643

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.93  E-value=0.22  Score=29.97  Aligned_cols=81  Identities=19%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             CCCEEEEecCC---chHHHHHHHHHHHcC-CEEEEEeCCCCC-CcchHHHHHHhHcCCCccEEEeCCChhhHHHHHH-hh
Q 041355           16 KGEYVYVSAAS---GAVGQLVGQFAKLAG-CYVVGSAGSKEK-EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVLL-NM   89 (180)
Q Consensus        16 ~g~~vlI~Ga~---g~vG~~~iqlak~~g-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~~-~l   89 (180)
                      .-++|.|.||+   +..|...++.++..| .+|+.+-...+. ........+.+ .++.+|+++-++..+....++. +.
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~d-lp~~vDlvvi~vp~~~~~~~~~~~~   85 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKD-IPDEIDLAIIVVPKRFVKDTLIQCG   85 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTS-CSSCCSEEEECSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhh-cCCCCceEEEecChHHhHHHHHHHH
Confidence            34689999988   778888888877666 488888766543 11111111111 1347999999999886666664 44


Q ss_pred             ccCCEEEE
Q 041355           90 RLRGRIAV   97 (180)
Q Consensus        90 ~~~G~~v~   97 (180)
                      +.+-+.+.
T Consensus        86 ~~g~~~~v   93 (129)
T d2csua1          86 EKGVKGVV   93 (129)
T ss_dssp             HHTCCEEE
T ss_pred             HcCCCEEE
Confidence            45544333

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=88.74  E-value=2.4  Score=28.70  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ...++++..| |...+|-.|+++...++.+|.+++++.+...
T Consensus        54 ~g~~~~~~~v-v~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~   94 (292)
T d2bhsa1          54 RGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNM   94 (292)
T ss_dssp             TTSCCTTSEE-EEECCSHHHHHHHHHHHHHTCEEEEEEESCC
T ss_pred             hCCcCCCcee-eeecccchhHHHHHHHHhcCcceEeeeccCc
Confidence            3445566655 4444899999999999999997666655543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.66  E-value=0.38  Score=31.08  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|.|+| .|=+|+.....+...|.+|++.+.++++
T Consensus         2 kI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~   35 (202)
T d1mv8a2           2 RISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTK   35 (202)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHH
Confidence            478998 9999998777777889999999887554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.61  E-value=0.36  Score=33.66  Aligned_cols=34  Identities=9%  Similarity=-0.016  Sum_probs=25.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcC--CEEEEEeCCCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAG--CYVVGSAGSKE   52 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~   52 (180)
                      ++|+|.| +|+.|++++..++..|  .+|++..+++.
T Consensus         5 KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5799999 8999988776554444  58888887753

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=88.45  E-value=1.9  Score=27.08  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC-----------------------------CcchH----HHHHHh
Q 041355           19 YVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK-----------------------------EEPDL----DAALKR   64 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~-----------------------------~~~~~----~~~~~~   64 (180)
                      +|.|.| .|-+|.++...+-.. ..+++++-.....                             +....    ...+.+
T Consensus         3 kIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578888 999999888777543 4577777654322                             00000    001111


Q ss_pred             H-cCC-CccEEEeCCChh-hHHHHHHhhccCCEEEEEecc
Q 041355           65 W-FPQ-GIDIYFENVGGK-MLDAVLLNMRLRGRIAVSSII  101 (180)
Q Consensus        65 ~-~~~-~~d~~~d~~g~~-~~~~~~~~l~~~G~~v~~~~~  101 (180)
                      . ... ++|+++||+|.- +.+.+...+..+.+-|.+..+
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            1 112 799999999965 667777778777655555433

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.35  E-value=0.26  Score=32.25  Aligned_cols=34  Identities=15%  Similarity=-0.004  Sum_probs=26.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcC-------CEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAG-------CYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g-------~~vi~~~~~~~~   53 (180)
                      +|+|.| +|+.|+++...+...|       ++|.+....+.-
T Consensus         4 ~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           4 YIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             EEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            799999 9999999887776655       478888776643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=88.29  E-value=0.28  Score=32.92  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=54.8

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC--CcchHH-----H-------HHHhHcCCCccE
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK--EEPDLD-----A-------ALKRWFPQGIDI   72 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~--~~~~~~-----~-------~~~~~~~~~~d~   72 (180)
                      +.....+....+||=.|  ++.|..+..+++.. +.++++++.++..  ......     .       ...+..++++|+
T Consensus        72 ~~~~~d~~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~  149 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA  149 (253)
T ss_dssp             HHHHSCCTTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred             HHhhcCCccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhh
Confidence            33555667778999887  34688899999887 5688888764211  000000     0       001111236888


Q ss_pred             EEeCC-----Chh----hHHHHHHhhccCCEEEEEec
Q 041355           73 YFENV-----GGK----MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~~-----g~~----~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ++-..     ..+    .+..+.+.|+|+|+++....
T Consensus       150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            76432     222    35677789999999988754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.23  E-value=0.33  Score=33.44  Aligned_cols=82  Identities=11%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------------CcchHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      ..-++|||.|+.+  |..+-.++++.+. +|.++.-.++-                      .-.|....+++ +++.+|
T Consensus        77 ~~pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yD  153 (285)
T d2o07a1          77 PNPRKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFD  153 (285)
T ss_dssp             SSCCEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEE
T ss_pred             cCcCeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCCCC
Confidence            4557899998543  6666777787766 77766555332                      11233344443 445899


Q ss_pred             EEE-eCCCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYF-ENVGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~-d~~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+ |+...          +-+..+.+.|+++|.++.-.
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            874 54321          12566778999999988754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.05  E-value=0.33  Score=31.40  Aligned_cols=31  Identities=19%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      |+|.| +||.|+.+...|...|.+|.++...+
T Consensus         6 viIIG-gGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIG-AGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            77888 89999999999999999999887654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.36  Score=33.30  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      |+|.| +|..|+.+...++..|.+|.++..++.
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78899 899999988888888999999887654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.99  E-value=1.2  Score=26.87  Aligned_cols=84  Identities=12%  Similarity=0.048  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCC---chHHHHHHHHHHHcCCEEEEEeCCCCC-CcchHHHHHHhHcCCCccEEEeCCChhhHHHHH-Hhh
Q 041355           15 KKGEYVYVSAAS---GAVGQLVGQFAKLAGCYVVGSAGSKEK-EEPDLDAALKRWFPQGIDIYFENVGGKMLDAVL-LNM   89 (180)
Q Consensus        15 ~~g~~vlI~Ga~---g~vG~~~iqlak~~g~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~~~~-~~l   89 (180)
                      .+-++|.|.|++   +..|..++..++..|++|+-+-..... ........+.+ .+..+|+++-++..+.....+ .++
T Consensus        17 ~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~d-lp~~iD~v~i~vp~~~~~~~~~e~~   95 (139)
T d2d59a1          17 TRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLD-IPDKIEVVDLFVKPKLTMEYVEQAI   95 (139)
T ss_dssp             HHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG-CSSCCSEEEECSCHHHHHHHHHHHH
T ss_pred             hcCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccc-cCccceEEEEEeCHHHHHHHHHHHH
Confidence            345789999987   567888888888999998887665433 11111111211 234689999999877555444 445


Q ss_pred             ccCCEEEEEe
Q 041355           90 RLRGRIAVSS   99 (180)
Q Consensus        90 ~~~G~~v~~~   99 (180)
                      +.+-+.+.+.
T Consensus        96 ~~g~k~v~~~  105 (139)
T d2d59a1          96 KKGAKVVWFQ  105 (139)
T ss_dssp             HHTCSEEEEC
T ss_pred             HhCCCEEEEe
Confidence            5555555553

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.98  E-value=0.32  Score=33.33  Aligned_cols=32  Identities=25%  Similarity=0.138  Sum_probs=27.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|+|+| +|..|+.+..-+...|++|+++...+
T Consensus        18 DVlVIG-~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVG-SGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            489999 89999998888888899999887654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=87.95  E-value=0.074  Score=37.08  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=24.3

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC------EEEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC------YVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~------~vi~~~~   49 (180)
                      +|||+||+|-+|..+++.+...|.      +++..+.
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~   38 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeC
Confidence            589999999999999988876664      4555543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=87.81  E-value=0.38  Score=32.92  Aligned_cols=82  Identities=10%  Similarity=0.075  Sum_probs=51.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------------CcchHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      .+.++|||.|+.  -|..+-.++++.+. +|.++.-.++-                      ...|....+++ ++..+|
T Consensus        74 ~~p~~vLiiGgG--~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~yD  150 (274)
T d1iy9a_          74 PNPEHVLVVGGG--DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYD  150 (274)
T ss_dssp             SSCCEEEEESCT--TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEE
T ss_pred             CCcceEEecCCC--CcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-cCCCCC
Confidence            455789999854  46667777887776 77777665442                      11122334443 344899


Q ss_pred             EEE-eCCCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYF-ENVGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~-d~~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+ |....          +-+..+.+.|+++|.++.-.
T Consensus       151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            874 44321          13677888999999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=87.75  E-value=0.44  Score=33.21  Aligned_cols=82  Identities=17%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC-----------------------CcchHHHHHHhHcCCCc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK-----------------------EEPDLDAALKRWFPQGI   70 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~   70 (180)
                      ...++|||.|+.  .|..+-.+++.... +|.++.-.++-                       .-.|..+.+++ +++.+
T Consensus        76 ~~pk~VLiiG~G--~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~y  152 (312)
T d1uira_          76 PEPKRVLIVGGG--EGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERY  152 (312)
T ss_dssp             SCCCEEEEEECT--TSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCE
T ss_pred             CCcceEEEeCCC--chHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCCcc
Confidence            455789999853  46667777887654 78877765442                       11233444443 44589


Q ss_pred             cEEE-eC---CCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           71 DIYF-EN---VGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        71 d~~~-d~---~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      |+|+ |.   .+.          +-+..+.+.|+++|.++.-.
T Consensus       153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9874 44   221          13467778999999887643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.69  Score=33.70  Aligned_cols=32  Identities=19%  Similarity=0.085  Sum_probs=26.5

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      .+|||.| +|++|.-+++.+-..|. ++..++..
T Consensus        38 ~kVlvvG-~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIG-AGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEEC-SSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4699999 89999999888888898 67766654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.39  E-value=0.47  Score=29.07  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=27.0

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~   51 (180)
                      +|.|.||+|.+|..+..++...+.  +++.++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            588999889999999988888885  777777653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.38  E-value=1.9  Score=26.06  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|.|.| .|-+|+..+.-+...|.+|++..+.+..
T Consensus         2 kIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~   35 (152)
T d1i36a2           2 RVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSP   35 (152)
T ss_dssp             EEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCH
T ss_pred             EEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhH
Confidence            578888 9999999888888889998887766543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.33  E-value=0.37  Score=31.55  Aligned_cols=32  Identities=13%  Similarity=-0.071  Sum_probs=27.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      -|+|.| +|+.|+.+...|..+|.+|.++...+
T Consensus         5 DviVIG-~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIG-GGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            378889 89999999999999999999887543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=87.24  E-value=1.8  Score=26.95  Aligned_cols=81  Identities=9%  Similarity=-0.042  Sum_probs=49.8

Q ss_pred             CEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC------C--------cchHHHHHHhHcCCCccEEEeCCChh---
Q 041355           18 EYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK------E--------EPDLDAALKRWFPQGIDIYFENVGGK---   80 (180)
Q Consensus        18 ~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~------~--------~~~~~~~~~~~~~~~~d~~~d~~g~~---   80 (180)
                      .+|.|.| .|.+|...+.-+...|.+|++.++++++      .        .....+.+.+... ..|.++-|+...   
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK-KPRRIILLVKAGQAV   80 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC-SSCEEEECSCTTHHH
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc-ccceEEEecCchHHH
Confidence            3588999 9999988777777789999999887764      0        0011222222222 356666665432   


Q ss_pred             --hHHHHHHhhccCCEEEEEec
Q 041355           81 --MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        81 --~~~~~~~~l~~~G~~v~~~~  100 (180)
                        ....+...++++-.++...+
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHHhccccCcEEEecCc
Confidence              23444556666666666654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.12  E-value=1.8  Score=25.99  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=25.1

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~~   53 (180)
                      +|.|.| +|.+|......+...+.  +++..+..+++
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~   37 (140)
T d1a5za1           2 KIGIVG-LGRVGSSTAFALLMKGFAREMVLIDVDKKR   37 (140)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeccccc
Confidence            578889 59999988777776664  67777765443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.49  Score=32.74  Aligned_cols=43  Identities=30%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCC
Q 041355            7 LIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKE   52 (180)
Q Consensus         7 ~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~   52 (180)
                      ++.+...+.+|++||-.| +| .|..++.+|+ .|+ +|+++..++.
T Consensus        26 ai~~~~~~~~~~~VLDiG-cG-~G~lsl~aa~-~Ga~~V~aid~s~~   69 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVG-CG-TGILSMFAAK-AGAKKVLGVDQSEI   69 (311)
T ss_dssp             HHHHCGGGTTTCEEEEET-CT-TSHHHHHHHH-TTCSEEEEEESSTH
T ss_pred             HHHhccccCCcCEEEEEC-CC-CCHHHHHHHH-cCCCEEEEEeCHHH
Confidence            344444567899999998 44 5667776666 476 8999988754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.85  E-value=1  Score=27.69  Aligned_cols=37  Identities=16%  Similarity=-0.092  Sum_probs=29.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      .+++|+|.| +|-+|.=++..+..+|+ .|+.+.+.+..
T Consensus        44 ~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            467899999 78888888888888898 67777776543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.82  E-value=0.37  Score=33.32  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|+|.| +|..|+.+.--+...|++|+++...+
T Consensus        21 DVvVIG-aG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVG-AGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            488999 99999998888888899999987654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.54  E-value=0.69  Score=31.54  Aligned_cols=81  Identities=15%  Similarity=0.078  Sum_probs=47.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------------------------CcchHHHHHHhHc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------------------------EEPDLDAALKRWF   66 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------------------------~~~~~~~~~~~~~   66 (180)
                      .+.++|||.|+.+  |..+-.+++.-..+|.++.-.++-                            ...|....+++  
T Consensus        71 ~~p~~vLiiG~G~--G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGD--GGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--  146 (276)
T ss_dssp             SCCCEEEEEECTT--SHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred             CCCceEEEecCCc--hHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--
Confidence            5567899998543  444555566433477766554321                            01223334432  


Q ss_pred             CCCccEE-EeCCCh----------hhHHHHHHhhccCCEEEEEe
Q 041355           67 PQGIDIY-FENVGG----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        67 ~~~~d~~-~d~~g~----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      .+++|+| +|+...          +-+..+.+.|+++|.++.-+
T Consensus       147 ~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         147 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            3579987 454432          13567788999999987654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=2.2  Score=25.82  Aligned_cols=32  Identities=22%  Similarity=0.119  Sum_probs=22.9

Q ss_pred             EEEEecCCchHHHHHHHHHH-HcC--CEEEEEeCC
Q 041355           19 YVYVSAASGAVGQLVGQFAK-LAG--CYVVGSAGS   50 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak-~~g--~~vi~~~~~   50 (180)
                      +|.|.|++|.+|.....+++ ..+  .++...+..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            58899988999987776554 334  367766654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.36  E-value=0.42  Score=33.07  Aligned_cols=82  Identities=9%  Similarity=0.115  Sum_probs=49.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC----------------------CcchHHHHHHhHcCCCcc
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK----------------------EEPDLDAALKRWFPQGID   71 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~----------------------~~~~~~~~~~~~~~~~~d   71 (180)
                      ..-++|||.|+++  |..+-.++++.+. +|.++.-.++-                      .-.|..+.+++ +++.+|
T Consensus        88 ~~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yD  164 (295)
T d1inla_          88 PNPKKVLIIGGGD--GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNEFD  164 (295)
T ss_dssp             SSCCEEEEEECTT--CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSCEE
T ss_pred             CCCceEEEecCCc--hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-CCCCCC
Confidence            3447899998544  5566677787765 77777776442                      01122233332 344799


Q ss_pred             EEE-eCCCh-----------hhHHHHHHhhccCCEEEEEe
Q 041355           72 IYF-ENVGG-----------KMLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        72 ~~~-d~~g~-----------~~~~~~~~~l~~~G~~v~~~   99 (180)
                      +|+ |+...           +-+..+.+.|+++|.++.-.
T Consensus       165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            874 44321           13567778999999988754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.35  E-value=1.2  Score=28.71  Aligned_cols=36  Identities=19%  Similarity=0.178  Sum_probs=26.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~   53 (180)
                      ++..||=.| +| .|..++.+|+.. +.++++++.+...
T Consensus        29 ~~PlvLeIG-cG-~G~~~~~lA~~~p~~~~iGiD~~~~~   65 (204)
T d2fcaa1          29 DNPIHIEVG-TG-KGQFISGMAKQNPDINYIGIELFKSV   65 (204)
T ss_dssp             CCCEEEEEC-CT-TSHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred             CCceEEEEE-ec-CcHHHHHHHHhCCCCcEEEeecchHH
Confidence            345667777 44 588888899876 5699999887553

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.09  E-value=2  Score=27.46  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=27.5

Q ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCC
Q 041355            8 IILVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEK   53 (180)
Q Consensus         8 l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~   53 (180)
                      +.+...+++|+.+ |-.++|+=|+ ...+++.. +.+|++++.+++.
T Consensus        15 vi~~l~~~~~~~~-lD~t~G~Ggh-s~~il~~~~~~~vi~~D~d~~~   59 (192)
T d1m6ya2          15 VIEFLKPEDEKII-LDCTVGEGGH-SRAILEHCPGCRIIGIDVDSEV   59 (192)
T ss_dssp             HHHHHCCCTTCEE-EETTCTTSHH-HHHHHHHCTTCEEEEEESCHHH
T ss_pred             HHHhhCCCCCCEE-EEecCCCcHH-HHHHHhcCCCCeEEEeechHHH
Confidence            3455677888855 5543444444 33444444 5699999998664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.89  E-value=0.43  Score=32.98  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=27.6

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      -|+|.| +|..|+.+...+...|++|+++...+.
T Consensus        25 DVvVIG-~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIG-SGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEEC-SSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            388999 999999988777778999999887543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=85.52  E-value=0.54  Score=31.41  Aligned_cols=32  Identities=9%  Similarity=0.071  Sum_probs=26.4

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      .|+|.| +|.+|+.+.-.+...|.+|+++.+.+
T Consensus         6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            488999 89999987777767799999998754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=85.35  E-value=0.2  Score=33.83  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=53.4

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEeCCCCCCcchHHHHH----------------HhHcCCCccE
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCYVVGSAGSKEKEEPDLDAAL----------------KRWFPQGIDI   72 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~~~~~~~~~~----------------~~~~~~~~d~   72 (180)
                      +...+....+||=.|  ++.|..+..+++.+ ++++++++.++..  +...+.+                .+..+.++|+
T Consensus        75 ~~~d~~~~~~vlDvG--~G~G~~~~~l~~~~P~~~~~~~Dlp~~~--~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~  150 (256)
T d1qzza2          75 DAYDWSAVRHVLDVG--GGNGGMLAAIALRAPHLRGTLVELAGPA--ERARRRFADAGLADRVTVAEGDFFKPLPVTADV  150 (256)
T ss_dssp             HTSCCTTCCEEEEET--CTTSHHHHHHHHHCTTCEEEEEECHHHH--HHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEE
T ss_pred             hcCCCccCCEEEEEC--CCCCHHHHHHHHhhcCcEEEEecChHHH--HHHHHHHhhcCCcceeeeeeeeccccccccchh
Confidence            444566778888887  45688999999987 6788888753211  0000001                1111236787


Q ss_pred             EEeCC-----Chh----hHHHHHHhhccCCEEEEEec
Q 041355           73 YFENV-----GGK----MLDAVLLNMRLRGRIAVSSI  100 (180)
Q Consensus        73 ~~d~~-----g~~----~~~~~~~~l~~~G~~v~~~~  100 (180)
                      ++-..     ..+    .+..+.+.|+|+|+++.+..
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            75321     212    35677789999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=85.30  E-value=0.48  Score=32.79  Aligned_cols=30  Identities=13%  Similarity=0.030  Sum_probs=25.9

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      |+|.| +|+.|+.+.-.|...|++|+++...
T Consensus         8 VvVIG-~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIG-GGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEEC-CSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCCEEEEecC
Confidence            88999 8999999888888889998888653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.11  E-value=1.6  Score=25.61  Aligned_cols=77  Identities=12%  Similarity=-0.034  Sum_probs=43.5

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-------------CcchHHHHHHhHcCCCccEEEeCCChh----h
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-------------EEPDLDAALKRWFPQGIDIYFENVGGK----M   81 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~~~d~~g~~----~   81 (180)
                      .++|+| .|.+|+.+++.++.  ..|+++...++.             .+..-.+.+++.--..++.++-+...+    .
T Consensus         2 HivI~G-~g~~g~~l~~~L~~--~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           2 HVVICG-WSESTLECLRELRG--SEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             CEEEES-CCHHHHHHHHTSCG--GGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHcC--CCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            478888 89999988776653  356666666554             111112334443223677777666654    1


Q ss_pred             HHHHHHhhccCCEEEEE
Q 041355           82 LDAVLLNMRLRGRIAVS   98 (180)
Q Consensus        82 ~~~~~~~l~~~G~~v~~   98 (180)
                      .....+.+.|..+++..
T Consensus        79 ~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          79 CILGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHHHCSSSCEEEE
T ss_pred             HHHHHHHHCCCceEEEE
Confidence            22333455666665554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=1.6  Score=29.76  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             HHHcCCCCCCEEEEe-cCCchHHHHHHHHHHHc-CCEEEEEeCCCCC
Q 041355            9 ILVCSPKKGEYVYVS-AASGAVGQLVGQFAKLA-GCYVVGSAGSKEK   53 (180)
Q Consensus         9 ~~~~~~~~g~~vlI~-Ga~g~vG~~~iqlak~~-g~~vi~~~~~~~~   53 (180)
                      ......++|++||=. .|.|+--.   +++... +.+|++++.+..+
T Consensus        95 ~~~L~~~~g~~vLD~CAaPGgKt~---~la~l~~~~~i~a~d~~~~R  138 (284)
T d1sqga2          95 MTWLAPQNGEHILDLCAAPGGKTT---HILEVAPEAQVVAVDIDEQR  138 (284)
T ss_dssp             HHHHCCCTTCEEEEESCTTCHHHH---HHHHHCTTCEEEEEESSTTT
T ss_pred             ccccCccccceeEeccCccccchh---hhhhhhhhhhhhhhhcchhh
Confidence            344577899999844 44444333   444333 3589999998887

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=84.94  E-value=2  Score=28.99  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=55.7

Q ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEeCCCCC----------C--cchHH-HHHHhH-cCCCccEEEe
Q 041355           12 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCYVVGSAGSKEK----------E--EPDLD-AALKRW-FPQGIDIYFE   75 (180)
Q Consensus        12 ~~~~~g~~vlI~Ga~g~vG~~~iqlak~~--g~~vi~~~~~~~~----------~--~~~~~-~~~~~~-~~~~~d~~~d   75 (180)
                      .++.+..+||=.| +| .|..+..+++..  +.+|++++.++..          .  ...+. ..+.+. .++.||+|+.
T Consensus        23 ~~~~~~~~ILDiG-cG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~  100 (281)
T d2gh1a1          23 WKITKPVHIVDYG-CG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC  100 (281)
T ss_dssp             SCCCSCCEEEEET-CT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEE
T ss_pred             hccCCcCEEEEec-Cc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEE
Confidence            3567788999888 55 588888999875  4689999987542          0  00000 001111 1237899875


Q ss_pred             CCC-----hh--hHHHHHHhhccCCEEEEEe
Q 041355           76 NVG-----GK--MLDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        76 ~~g-----~~--~~~~~~~~l~~~G~~v~~~   99 (180)
                      ...     ..  .+..+.+.|+|+|.++...
T Consensus       101 ~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         101 HAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            432     12  5777889999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.93  E-value=0.67  Score=30.94  Aligned_cols=30  Identities=20%  Similarity=0.094  Sum_probs=26.6

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGS   50 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~   50 (180)
                      ++|.| +|+.|+.+...|..+|.+|..+.+.
T Consensus         4 viVIG-~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIG-GGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCeEEEEecC
Confidence            67889 8999999999999999999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.86  E-value=0.72  Score=30.82  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=27.9

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ++|.| +|+.|+.+...+..+|.+|.++...+.
T Consensus        45 vvVIG-gG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          45 AIFIG-GGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            78888 899999999999999999988887654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.82  E-value=1.3  Score=24.52  Aligned_cols=32  Identities=19%  Similarity=0.140  Sum_probs=25.5

Q ss_pred             EEEEecCCchHHHHH-HHHHHHcCCEEEEEeCCC
Q 041355           19 YVYVSAASGAVGQLV-GQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~-iqlak~~g~~vi~~~~~~   51 (180)
                      +|-+.| -|++|+.+ +++++..|+.|.+.+..+
T Consensus         3 ~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           3 KIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            466777 88899864 688889999999988753

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.76  E-value=4.5  Score=27.80  Aligned_cols=42  Identities=21%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           11 VCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        11 ~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      ...++++...+|...+|..|++....++.+|.+.+++.....
T Consensus        58 ~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~   99 (320)
T d1z7wa1          58 KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASM   99 (320)
T ss_dssp             TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTS
T ss_pred             cCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhh
Confidence            345667766777777999999999999999997666555544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.75  E-value=0.63  Score=31.23  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=26.2

Q ss_pred             EEEecCCchHHHHHHHHHHHcCCEEEEEeCCC
Q 041355           20 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSK   51 (180)
Q Consensus        20 vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~   51 (180)
                      |+|.| +|.+|+.++.-+...|.+|+++.+.+
T Consensus         6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            78999 89999987777777899999998753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.19  E-value=1.5  Score=26.80  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=28.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      |..+|.|.| +|.+|.....++...+. +++..+..+++
T Consensus         2 p~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           2 PKAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            456899999 69999988888887777 77766665543

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=1.5  Score=27.69  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEe---cCCchHHHHHHHHHHHcCCEEEEE
Q 041355           13 SPKKGEYVYVS---AASGAVGQLVGQFAKLAGCYVVGS   47 (180)
Q Consensus        13 ~~~~g~~vlI~---Ga~g~vG~~~iqlak~~g~~vi~~   47 (180)
                      .+.+|++|+|.   =++|++-.+++++++..|++|+.+
T Consensus       114 ~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~  151 (178)
T d1zn7a1         114 ALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLEC  151 (178)
T ss_dssp             SSCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEEEE
Confidence            46789999874   458999999999999999987653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.86  E-value=0.81  Score=31.78  Aligned_cols=37  Identities=22%  Similarity=0.097  Sum_probs=23.6

Q ss_pred             CCCCCCEEEE-ecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           13 SPKKGEYVYV-SAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        13 ~~~~g~~vlI-~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +..++.+||= +.++|+.   .+.+++ .|++|+.++.++..
T Consensus       129 ~~~~~~rVLdlf~~tG~~---sl~aa~-~GA~V~~VD~s~~a  166 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVA---SLVAAA-AGAEVTHVDASKKA  166 (309)
T ss_dssp             HSSSCCEEEEETCTTCHH---HHHHHH-TTCEEEEECSCHHH
T ss_pred             hccCCCeEEEecCCCcHH---HHHHHh-CCCeEEEEeChHHH
Confidence            3567888884 4444444   444443 58899988887654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.86  E-value=3.8  Score=26.23  Aligned_cols=30  Identities=20%  Similarity=-0.038  Sum_probs=24.2

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAG   49 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~   49 (180)
                      +|+++| .+..|..+++.+...|.+|.++..
T Consensus         2 kiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt   31 (203)
T d2blna2           2 KTVVFA-YHDMGCLGIEALLAAGYEISAIFT   31 (203)
T ss_dssp             EEEEEE-CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             eEEEEe-cCHHHHHHHHHHHHCCCCEEEEEc
Confidence            477887 888999999988888988876654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.67  E-value=3.1  Score=26.71  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             CCEEEEecCCchHHHH--HHHHHH---HcCCEEEEEeCC
Q 041355           17 GEYVYVSAASGAVGQL--VGQFAK---LAGCYVVGSAGS   50 (180)
Q Consensus        17 g~~vlI~Ga~g~vG~~--~iqlak---~~g~~vi~~~~~   50 (180)
                      |..|.|+++.|++|.-  ++.+|.   ..|.+|..++-.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4568899889999832  444443   357788888743

>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Leishmania donovani [TaxId: 5661]

Probab=83.13  E-value=1.3  Score=29.47  Aligned_cols=34  Identities=26%  Similarity=0.191  Sum_probs=28.5

Q ss_pred             CCCCCCEEEEe---cCCchHHHHHHHHHHHcCCEEEE
Q 041355           13 SPKKGEYVYVS---AASGAVGQLVGQFAKLAGCYVVG   46 (180)
Q Consensus        13 ~~~~g~~vlI~---Ga~g~vG~~~iqlak~~g~~vi~   46 (180)
                      .+.+|++|+|.   =++|++-.+++++++..|++|+.
T Consensus       134 ~l~~g~rVlIVDDviaTGgT~~aa~~ll~~~Ga~Vvg  170 (236)
T d1qb7a_         134 SIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVE  170 (236)
T ss_dssp             SSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCceEEEehhhhhccHHHHHHHHHHHHCCCEEEE
Confidence            46789999875   36899999999999999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.89  E-value=3.3  Score=24.92  Aligned_cols=76  Identities=22%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             EEEEecCCchHHHHHHH-HHHHcCCEEEEEeCCCCCCcchHHHHHH-hHc---CC--CccEEEeCCChhhHHHHHHhhcc
Q 041355           19 YVYVSAASGAVGQLVGQ-FAKLAGCYVVGSAGSKEKEEPDLDAALK-RWF---PQ--GIDIYFENVGGKMLDAVLLNMRL   91 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iq-lak~~g~~vi~~~~~~~~~~~~~~~~~~-~~~---~~--~~d~~~d~~g~~~~~~~~~~l~~   91 (180)
                      +|.+.| +|.+|.+.++ +.+.-+.+|++.++++++ .+.+.+... ...   ..  ..|++|=|+--+.+...++-+++
T Consensus         2 kI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~-~~~l~~~~~~~~~~~~~~v~~~Div~lavkP~~~~~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEK-RERLEKELGVETSATLPELHSDDVLILAVKPQDMEAACKNIRT   79 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHH-HHHHHHHTCCEEESSCCCCCTTSEEEECSCHHHHHHHHTTCCC
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhH-HHHhhhhcccccccccccccccceEEEecCHHHHHHhHHHHhh
Confidence            478889 8999998777 555544689888776542 111111110 001   11  57999988875566667766666


Q ss_pred             CCEEE
Q 041355           92 RGRIA   96 (180)
Q Consensus        92 ~G~~v   96 (180)
                      .++++
T Consensus        80 ~~~~v   84 (152)
T d1yqga2          80 NGALV   84 (152)
T ss_dssp             TTCEE
T ss_pred             cccEE
Confidence            66554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.46  E-value=0.83  Score=31.75  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=25.9

Q ss_pred             HHHcCCCCCCEEE-EecCCchHHHHHHHHHHHcC--CEEEEEeCCCCC
Q 041355            9 ILVCSPKKGEYVY-VSAASGAVGQLVGQFAKLAG--CYVVGSAGSKEK   53 (180)
Q Consensus         9 ~~~~~~~~g~~vl-I~Ga~g~vG~~~iqlak~~g--~~vi~~~~~~~~   53 (180)
                      .....+++|++|| .+.|.|+-   +.+++...+  ..+++.+.++.+
T Consensus       109 ~~~l~~~~g~~vlD~CAapGgK---t~~l~~~~~~~~~i~a~d~~~~r  153 (313)
T d1ixka_         109 PVALDPKPGEIVADMAAAPGGK---TSYLAQLMRNDGVIYAFDVDENR  153 (313)
T ss_dssp             HHHHCCCTTCEEEECCSSCSHH---HHHHHHHTTTCSEEEEECSCHHH
T ss_pred             hhcccCCccceeeecccchhhh---hHhhhhhcccccceeeeccCHHH
Confidence            3455789999987 34444433   445555443  378888877654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=82.26  E-value=1.3  Score=29.15  Aligned_cols=83  Identities=12%  Similarity=-0.065  Sum_probs=47.4

Q ss_pred             EEEEecCCch----HHHHHHHHHHHc--CCEEEEEeCCCCCCcchH-----------HHHHHhHc-CCCccEEEeCCChh
Q 041355           19 YVYVSAASGA----VGQLVGQFAKLA--GCYVVGSAGSKEKEEPDL-----------DAALKRWF-PQGIDIYFENVGGK   80 (180)
Q Consensus        19 ~vlI~Ga~g~----vG~~~iqlak~~--g~~vi~~~~~~~~~~~~~-----------~~~~~~~~-~~~~d~~~d~~g~~   80 (180)
                      +|.|.| .|.    ++..-++..+..  +++++++++.+....+.+           ...+.+.. ...+|+++.|+...
T Consensus        18 rvgiIG-~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          18 RVGFVG-LTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEC-CCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             EEEEEe-cCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            678999 454    333333344443  569998887654300000           01122222 23799999999876


Q ss_pred             -hHHHHHHhhccC-----CEEEEEeccc
Q 041355           81 -MLDAVLLNMRLR-----GRIAVSSIIS  102 (180)
Q Consensus        81 -~~~~~~~~l~~~-----G~~v~~~~~~  102 (180)
                       ..+.+..++..+     +.-+.+.-+-
T Consensus        97 ~h~~~~~~al~aG~~~~~~k~V~~EKPl  124 (237)
T d2nvwa1          97 EHYEVVKNILEHSSQNLNLRYLYVEWAL  124 (237)
T ss_dssp             HHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred             chhhHHHHHHHhcccccCCceEEEeccc
Confidence             677777777644     4567775443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=4.1  Score=25.52  Aligned_cols=85  Identities=15%  Similarity=0.032  Sum_probs=48.3

Q ss_pred             CCCCCEEEEec-CCchHHHHHHHHHHHcCCEEEEEeCCCCC------------CcchHHHHHHhHcC-CCccEEE-----
Q 041355           14 PKKGEYVYVSA-ASGAVGQLVGQFAKLAGCYVVGSAGSKEK------------EEPDLDAALKRWFP-QGIDIYF-----   74 (180)
Q Consensus        14 ~~~g~~vlI~G-a~g~vG~~~iqlak~~g~~vi~~~~~~~~------------~~~~~~~~~~~~~~-~~~d~~~-----   74 (180)
                      ++++.+|+=.| |.|+=-+.+.+.... ...|++++..+..            .+......+..... +++|+|+     
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~-~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap   98 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGG-KGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCT-TCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccc-cceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccc
Confidence            58899887555 334333444332222 1378888877765            22333334444433 4788875     


Q ss_pred             eCCChhh-------------HHHHHHhhccCCEEEEEe
Q 041355           75 ENVGGKM-------------LDAVLLNMRLRGRIAVSS   99 (180)
Q Consensus        75 d~~g~~~-------------~~~~~~~l~~~G~~v~~~   99 (180)
                      |+.|...             +..+.++|+++|.++.=-
T Consensus        99 ~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            4555421             344567889999998643

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.16  E-value=0.74  Score=26.31  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=21.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKE   52 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~   52 (180)
                      .|++|+|.|++.+-...+.++++... +++...+++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEecCc
Confidence            57899999955444455666655433 4444444433

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=1  Score=26.57  Aligned_cols=54  Identities=11%  Similarity=-0.162  Sum_probs=34.5

Q ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC-CcchHHHHHHh
Q 041355           10 LVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK-EEPDLDAALKR   64 (180)
Q Consensus        10 ~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~-~~~~~~~~~~~   64 (180)
                      ....+=.|++|+|.|+.-+.-..|+.|++ +.-+|+.+.+.+.. .++...+.+++
T Consensus        20 cD~~~~~~k~V~VvGgGdsA~e~A~~L~~-~a~~V~li~r~~~~~~~~~~~~~~~~   74 (126)
T d1trba2          20 SDGFFYRNQKVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDGFRAEKILIKRLMD   74 (126)
T ss_dssp             HHGGGGTTSEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSCCCCHHHHHHHHH
T ss_pred             cchHHhCCCEEEEECCCHHHHHHHHHHhh-cCCcEEEEeecccccchhHHHHHHHH
Confidence            44455578999999975555555555555 44589988887764 33444555544

>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.99  E-value=2  Score=27.09  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=28.3

Q ss_pred             CCCCCCEEEEe---cCCchHHHHHHHHHHHcCCEEEE
Q 041355           13 SPKKGEYVYVS---AASGAVGQLVGQFAKLAGCYVVG   46 (180)
Q Consensus        13 ~~~~g~~vlI~---Ga~g~vG~~~iqlak~~g~~vi~   46 (180)
                      .+.+|++|+|.   =++|++=.+++++++..|++|+.
T Consensus       118 ~l~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg  154 (178)
T d1g2qa_         118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLE  154 (178)
T ss_dssp             SSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCCEEEEEehHhhhChHHHHHHHHHHHcCCEEEE
Confidence            46789999875   36899999999999999998654

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.72  E-value=0.8  Score=29.87  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCchHH---HHHHHHHHHcCCEEEEEeCCCCCCcchHHHH---HHhHc-----------CCCccEEEeCC-
Q 041355           16 KGEYVYVSAASGAVG---QLVGQFAKLAGCYVVGSAGSKEKEEPDLDAA---LKRWF-----------PQGIDIYFENV-   77 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG---~~~iqlak~~g~~vi~~~~~~~~~~~~~~~~---~~~~~-----------~~~~d~~~d~~-   77 (180)
                      ...+|+|..|.|--|   +++...++..|++|.++...+.. .++...+   ..+..           ...+|+++|+. 
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlIIDal~  117 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKK-TPDCEYNYGLYKKFGGKVVEQFEPSILNEFDVVVDAIF  117 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSC-CHHHHHHHHHHHHTTCCEESCCCGGGGGGCSEEEEESC
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccC-CcHHHHHHHHHHHcCCccccccccccccCceEEEEecc
Confidence            455677765577664   67777777778888776655443 1111111   11110           01589999997 


Q ss_pred             Ch-------hhHHHHHHhhccC-CEEEEEecccc
Q 041355           78 GG-------KMLDAVLLNMRLR-GRIAVSSIISQ  103 (180)
Q Consensus        78 g~-------~~~~~~~~~l~~~-G~~v~~~~~~~  103 (180)
                      |.       ..+...+..+... ..++.+-.+.+
T Consensus       118 G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         118 GTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             cCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence            32       1345566666544 44555544443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.62  E-value=3.5  Score=26.94  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=28.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGS   50 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~-~vi~~~~~   50 (180)
                      ...+|+++| +|+.|....++....+. +++.+++.
T Consensus        25 ~d~riv~~G-AGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          25 EEVKVVVNG-IGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhcEEEEEC-hHHHHHHHHHHHHHhcccceEeecce
Confidence            557889998 89999998888888888 78887775

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.58  E-value=1.1  Score=27.32  Aligned_cols=37  Identities=22%  Similarity=0.115  Sum_probs=28.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCC--EEEEEeCCCC
Q 041355           15 KKGEYVYVSAASGAVGQLVGQFAKLAGC--YVVGSAGSKE   52 (180)
Q Consensus        15 ~~g~~vlI~Ga~g~vG~~~iqlak~~g~--~vi~~~~~~~   52 (180)
                      ..+.+|.|.| +|.+|......+...+.  +++.++..++
T Consensus         4 ~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           4 NGGARVVVIG-AGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TTSCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            3567899999 59999998888887775  6777776543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.81  E-value=1.1  Score=31.92  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.8

Q ss_pred             EEEEecCCchHHHHH-HHHHHH-----cCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLV-GQFAKL-----AGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~-iqlak~-----~g~~vi~~~~~~~~   53 (180)
                      -|+|.| +|+.|+++ +.|||+     .|++|.++.+...-
T Consensus        34 DViIVG-gGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVG-AGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEEC-CCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            488999 89999775 455553     68899999987553

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=80.63  E-value=6.7  Score=26.89  Aligned_cols=49  Identities=12%  Similarity=0.020  Sum_probs=30.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355            4 VGNLIILVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus         4 a~~~l~~~~~~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      |++.+.....-.+...|+... +|..|.++...++..|..++++......
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~g~~~~i~~p~~~~  110 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARLGVKALIVMPTATA  110 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEECCSSCC
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccccccceeeccccch
Confidence            445553333323444455544 8888999999999999876666655443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.45  E-value=4.9  Score=25.25  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC----------CcchHHHHHHhHcCCCccEEEeCCChhhHH--
Q 041355           16 KGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK----------EEPDLDAALKRWFPQGIDIYFENVGGKMLD--   83 (180)
Q Consensus        16 ~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~d~~g~~~~~--   83 (180)
                      ++++|.|.| -|+.|.+=.+=+|=.|.+|++--+..+.          +..++.+..+     ..|+++--+..+.-.  
T Consensus        15 k~k~IaViG-YGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~-----~aDiim~L~PD~~q~~v   88 (182)
T d1np3a2          15 QGKKVAIIG-YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVA-----AADVVMILTPDEFQGRL   88 (182)
T ss_dssp             HTSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHH-----TCSEEEECSCHHHHHHH
T ss_pred             CCCEEEEEe-eCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhh-----hcCeeeeecchHHHHHH
Confidence            468899999 9999999999999999999887776543          1112233333     368888777765322  


Q ss_pred             ---HHHHhhccCCEEEE
Q 041355           84 ---AVLLNMRLRGRIAV   97 (180)
Q Consensus        84 ---~~~~~l~~~G~~v~   97 (180)
                         .+...|+++-.+.+
T Consensus        89 y~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          89 YKEEIEPNLKKGATLAF  105 (182)
T ss_dssp             HHHHTGGGCCTTCEEEE
T ss_pred             HHHhhhhhcCCCcEEEE
Confidence               34456676666554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.21  E-value=3.6  Score=25.39  Aligned_cols=34  Identities=21%  Similarity=0.050  Sum_probs=27.9

Q ss_pred             EEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           19 YVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        19 ~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      +|.|.| .|-+|...+.-+...|.+|++.++++++
T Consensus         3 kIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~   36 (178)
T d1pgja2           3 DVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSK   36 (178)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             EEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            377889 9999998887777789999998886554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=0.3  Score=32.55  Aligned_cols=38  Identities=13%  Similarity=-0.134  Sum_probs=24.5

Q ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEeCCCCC
Q 041355           14 PKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK   53 (180)
Q Consensus        14 ~~~g~~vlI~Ga~g~vG~~~iqlak~~g~~vi~~~~~~~~   53 (180)
                      ..+|.+||=.| +|+ |.....+++..+.+|++++-++..
T Consensus        49 ~~~g~~vLDlG-cG~-G~~~~~~~~~~~~~v~giD~S~~~   86 (257)
T d2a14a1          49 GLQGDTLIDIG-SGP-TIYQVLAACDSFQDITLSDFTDRN   86 (257)
T ss_dssp             SCCEEEEEESS-CTT-CCGGGTTGGGTEEEEEEEESCHHH
T ss_pred             CCCCCEEEEEC-CCC-CHhHHHHhccccCcEEEecCCHHH
Confidence            46788898888 553 544444444433379999987654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=80.07  E-value=0.51  Score=30.01  Aligned_cols=34  Identities=18%  Similarity=-0.087  Sum_probs=23.6

Q ss_pred             CCCEEE-EecCCchHHHHHHHHHHHcCC-EEEEEeCCCCC
Q 041355           16 KGEYVY-VSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK   53 (180)
Q Consensus        16 ~g~~vl-I~Ga~g~vG~~~iqlak~~g~-~vi~~~~~~~~   53 (180)
                      .|.++| ++.|+|++|+-|+    +.|+ .|+.+..+...
T Consensus        43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a   78 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTV   78 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHH
T ss_pred             ccceEeecccCccceeeeee----eecceeeEEeecccch
Confidence            445555 6777888887554    7888 78888776543