Citrus Sinensis ID: 041361

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
MNSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccc
ccccccccccEcccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHH
mnskacnvipprqsanykpniwkyDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKndtgclevKDLYATALCFKLLRQHgyeisqgi
mnskacnvipprqsanykpniwKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI
MNSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFleaadllaklelIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI
***************NYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYE*****
****************YKPNIWKYDFIQSLH****************NDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQG*
MNSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI
********IPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRxxxxxxxxxxxxxxxxxxxxxLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query127 2.2.26 [Sep-21-2011]
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.976 0.209 0.476 3e-26
Q84LB2 576 (E,E)-alpha-farnesene syn N/A no 0.960 0.211 0.523 6e-25
Q8GUE4 603 Geraniol synthase, chloro N/A no 0.889 0.187 0.449 2e-23
A7IZZ1 622 (-)-limonene synthase, ch N/A no 0.897 0.183 0.508 4e-23
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.897 0.185 0.5 7e-22
Q93X23 597 Myrcene synthase, chlorop N/A no 0.889 0.189 0.466 3e-21
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.992 0.213 0.425 5e-21
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.984 0.206 0.440 8e-20
Q9SPN1 583 R-linalool synthase QH5, N/A no 0.889 0.193 0.453 2e-19
A4FVP2 565 Tricyclene synthase, chlo no no 0.913 0.205 0.425 3e-19
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function desciption
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 85/126 (67%), Gaps = 2/126 (1%)

Query: 2   NSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLL 61
           +++   ++  R+SANY PNIW YD +QSL S YK      R EKL  DV++   EA  LL
Sbjct: 44  STQVTELMTARRSANYHPNIWDYDSVQSLTSDYKAYTYLERVEKLKEDVRRTLQEAVGLL 103

Query: 62  AKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGY 121
            +LEL+D I +LG+ Y F+++I+EIL  T++   N+ G ++  DLYA AL F+LLRQHGY
Sbjct: 104 DQLELVDCIHRLGVGYHFDKEIKEIL-KTISTEPNNMGLID-GDLYAMALYFRLLRQHGY 161

Query: 122 EISQGI 127
           E+ QG+
Sbjct: 162 EVPQGV 167
Monoterpene synthase converting geranyl diphosphate into alpha-terpineol. In vitro, can also have an sesquiterpene synthase activity, converting farnesyl diphosphate into (E)-alpha-bisabolene (33.1%), alpha-bisabolene (18.7%), beta-sesquiphellandrene (15.8%), beta-bergamotene (12.6%), (Z)-alpha-farnesene (10.4%), and (Z)-alpha-bisabolene (9.4%).
Magnolia grandiflora (taxid: 3406)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 2
>sp|Q84LB2|AFS1_MALDO (E,E)-alpha-farnesene synthase OS=Malus domestica GN=AFS1 PE=1 SV=2 Back     alignment and function description
>sp|Q8GUE4|GERS_CINTE Geraniol synthase, chloroplastic OS=Cinnamomum tenuipile GN=GerS PE=1 SV=2 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|Q9SPN1|LLOS5_ARTAN R-linalool synthase QH5, chloroplastic OS=Artemisia annua GN=QH5 PE=2 SV=1 Back     alignment and function description
>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
350284790 564 alpha-farnesene synthase [Ricinus commun 0.984 0.221 0.523 1e-30
255555083 521 (R)-limonene synthase, putative [Ricinus 0.976 0.238 0.528 2e-30
224116322 580 predicted protein [Populus trichocarpa] 0.976 0.213 0.568 9e-30
336318891 574 terpene synthase 2 [Populus trichocarpa] 0.984 0.217 0.563 1e-29
410591616 592 RecName: Full=Alpha-terpineol synthase, 0.976 0.209 0.476 2e-24
60476198 273 alpha-farnesene synthase [Malus x domest 0.952 0.443 0.535 1e-23
60476196 273 alpha-farnesene synthase [Malus x domest 0.952 0.443 0.535 1e-23
45551416 576 (E,E)-alpha-farnesene synthase [Malus x 0.960 0.211 0.523 4e-23
60418690 576 alpha-farnesene synthase [Malus x domest 0.960 0.211 0.523 4e-23
46404797163 alpha-farnesene synthase [Pyrus pyrifoli 0.952 0.742 0.527 4e-23
>gi|350284790|gb|AEQ27768.1| alpha-farnesene synthase [Ricinus communis] Back     alignment and taxonomy information
 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 2   NSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLL 61
           NS+A  ++  R+S NYKPNIWKYDF+QSL SKY EE  +++AE+L  D K +F+EA DL 
Sbjct: 13  NSEAFGMMQERRSGNYKPNIWKYDFLQSLSSKYDEEKYKTQAERLKEDAKHLFIEAVDLQ 72

Query: 62  AKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGY 121
            KLEL+D I K+GL+  F+++I++ L    + +KND     +K+ Y TALCF+LLRQHGY
Sbjct: 73  GKLELVDCIIKVGLASHFKDEIKKALDTIASSIKNDKSD-AIKNRYVTALCFRLLRQHGY 131

Query: 122 EISQGI 127
           E+SQ +
Sbjct: 132 EVSQDV 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555083|ref|XP_002518579.1| (R)-limonene synthase, putative [Ricinus communis] gi|223542424|gb|EEF43966.1| (R)-limonene synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224116322|ref|XP_002317269.1| predicted protein [Populus trichocarpa] gi|222860334|gb|EEE97881.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|336318891|gb|AEI52902.1| terpene synthase 2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|410591616|sp|B3TPQ7.1|ATESY_MAGGA RecName: Full=Alpha-terpineol synthase, chloroplastic; Short=Mg17; Flags: Precursor gi|184097730|gb|ACC66282.1| alpha-terpineol synthase [Magnolia grandiflora] Back     alignment and taxonomy information
>gi|60476198|gb|AAX21242.1| alpha-farnesene synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|60476196|gb|AAX21241.1| alpha-farnesene synthase [Malus x domestica] gi|60476200|gb|AAX21243.1| alpha-farnesene synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|45551416|gb|AAS68019.1| (E,E)-alpha-farnesene synthase [Malus x domestica] gi|116256788|gb|ABJ90485.1| alpha-farnesene synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|60418690|gb|AAX19772.1| alpha-farnesene synthase [Malus x domestica] gi|60418692|gb|AAX19773.1| alpha-farnesene synthase [Malus x domestica] gi|60418694|gb|AAX19774.1| alpha-farnesene synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|46404797|gb|AAS93266.1| alpha-farnesene synthase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.976 0.209 0.420 1.8e-20
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.889 0.187 0.415 6.1e-19
UNIPROTKB|Q8H2B4 606 Q8H2B4 "R-linalool synthase, c 0.905 0.189 0.410 4.5e-18
UNIPROTKB|Q672F7 595 EBOS "Tricyclene synthase EBOS 0.944 0.201 0.380 1e-15
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.897 0.201 0.406 2e-15
UNIPROTKB|Q5UB07 580 TPS4 "Tricyclene synthase TPS4 0.913 0.2 0.408 2.1e-15
UNIPROTKB|Q9SPN1 583 QH5 "R-linalool synthase QH5, 0.905 0.197 0.410 2.7e-15
TAIR|locus:2129101 565 TPS03 "terpene synthase 03" [A 0.913 0.205 0.375 1.8e-14
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.913 0.214 0.372 2.2e-14
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.889 0.206 0.371 2.8e-14
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
 Score = 250 (93.1 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 53/126 (42%), Positives = 77/126 (61%)

Query:     2 NSKACNVIPPRQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXX 61
             +++   ++  R+SANY PNIW YD +QSL S YK      R EKL  DV++         
Sbjct:    44 STQVTELMTARRSANYHPNIWDYDSVQSLTSDYKAYTYLERVEKLKEDVRRTLQEAVGLL 103

Query:    62 XXXXXIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGY 121
                  +D I +LG+ Y F+++I+EIL  T++   N+ G ++  DLYA AL F+LLRQHGY
Sbjct:   104 DQLELVDCIHRLGVGYHFDKEIKEIL-KTISTEPNNMGLID-GDLYAMALYFRLLRQHGY 161

Query:   122 EISQGI 127
             E+ QG+
Sbjct:   162 EVPQGV 167
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
GO:0043693 "monoterpene biosynthetic process" evidence=IDA
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-32
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-32
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-09
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 8e-06
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  119 bits (300), Expect = 1e-32
 Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 5/120 (4%)

Query: 12  RQSANYKPNIWKYDFIQSLHSKYKEEGCRS-RAEKLTNDVKQMFLEA---ADLLAKLELI 67
           R SAN+ P++W  D   SL S Y EE       E+L  +V++M  ++    DL  +L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 68  DRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
           DR+ +LG+SY FE++I+EIL D +     + G     DLY TAL F+LLRQHGY +S  +
Sbjct: 61  DRLQRLGISYHFEDEIKEIL-DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDV 119

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 127
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 99.85
PLN02592 800 ent-copalyl diphosphate synthase 99.83
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information 
Probab=100.00  E-value=1e-38  Score=243.74  Aligned_cols=104  Identities=47%  Similarity=0.808  Sum_probs=85.2

Q ss_pred             CcccccccCcccch------HHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhh
Q 041361           22 WKYDFIQSLHSKYK------EEGCRSRAEKLTNDVKQMFLEA-ADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFL   94 (127)
Q Consensus        22 W~~~fl~s~~~~~~------~~~~~~~~e~Lk~~vr~~l~~~-~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~   94 (127)
                      ||++|++++.+.+.      .+++.+++++||++||.||... .++.++|+|||+||||||+|||++||+++|+++|+.+
T Consensus         1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~   80 (183)
T PF01397_consen    1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW   80 (183)
T ss_dssp             TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred             CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence            99999976555443      3789999999999999999876 4899999999999999999999999999999999643


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361           95 KNDTGCLEVKDLYATALCFKLLRQHGYEISQGI  127 (127)
Q Consensus        95 ~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV  127 (127)
                      ..  ......|||+|||+|||||||||+|||||
T Consensus        81 ~~--~~~~~~dL~~~AL~FRLLRqhGy~VS~Dv  111 (183)
T PF01397_consen   81 DE--DNEEIDDLYTTALRFRLLRQHGYYVSSDV  111 (183)
T ss_dssp             TT--TSHTSSCHHHHHHHHHHHHHTT----GGG
T ss_pred             cc--cccccCchhHHHHHHHHHHHcCCcccHHH
Confidence            32  11122599999999999999999999997

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-15
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 8e-15
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 4e-14
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 7e-14
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-08
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 7e-08
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-07
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-07
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 3e-07
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 3e-07
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-07
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 3e-07
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-07
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-07
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-07
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 3e-06
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-04
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure 
Iteration: 1

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 12  RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXXXXXXXIDRIC 71
           R+S NY+P +W  ++IQSL++ Y EE    R  +L   V+ +             I  + 
Sbjct: 6   RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65
Query: 72  KLGLSYLFEEQIREILVDTVAFLKNDTGC-----LEVKDLYATALCFKLLRQHGYEISQG 126
            LGLS  F+++I+EIL      + N+  C     +E  DLY TAL F+LLRQHG+ ISQ 
Sbjct: 66  YLGLSDFFQDEIKEIL----GVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQD 121
Query: 127 I 127
           +
Sbjct: 122 V 122
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 4e-32
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 8e-30
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 1e-29
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 4e-28
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 2e-26
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 9e-25
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-23
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-15
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-11
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 4e-14
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-13
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  117 bits (294), Expect = 4e-32
 Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 4/116 (3%)

Query: 12  RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRIC 71
            ++  Y+P +W +  IQS  S+YKEE    RA  + + VK M  E  D + +LELID + 
Sbjct: 35  IRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLR 94

Query: 72  KLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
           +LG+S  FE +I EIL     +  N+    + +DLY+TAL F+LLRQ+ + +SQ +
Sbjct: 95  RLGISCHFEREIVEILNSK--YYTNNEI--DERDLYSTALRFRLLRQYDFSVSQEV 146
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.88
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 99.87
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 99.87
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 99.87
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.87
1c07_A95 Protein (epidermal growth factor receptor pathway 82.77
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-39  Score=278.43  Aligned_cols=110  Identities=35%  Similarity=0.577  Sum_probs=100.1

Q ss_pred             CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 041361           12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEQIREILVDT   90 (127)
Q Consensus        12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~-~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i   90 (127)
                      ||+++|+||+|||+|++++...+..+.+.+++++||++||+||.+ ..++.++|+|||+||||||+|||++||+++|+++
T Consensus        17 R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i   96 (550)
T 3m00_A           17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI   96 (550)
T ss_dssp             CCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH
T ss_pred             CCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Confidence            999999999999999998766666778999999999999999975 4789999999999999999999999999999999


Q ss_pred             HHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361           91 VAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI  127 (127)
Q Consensus        91 ~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV  127 (127)
                      |+.+.    .  ..|||+|||+|||||||||+|||||
T Consensus        97 ~~~~~----~--~~dl~~~al~FRLLR~hGy~VS~dv  127 (550)
T 3m00_A           97 YNQNS----N--CNDLCTSALQFRLLRQHGFNISPEI  127 (550)
T ss_dssp             HHHCC----C--CSSHHHHHHHHHHHHHTTCCCCGGG
T ss_pred             HHhcc----c--CCCHHHHHHHHHHHHhcCCCCChHH
Confidence            95432    1  2699999999999999999999997
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 127
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-33
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-26
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  113 bits (284), Expect = 2e-33
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 21  IWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFE 80
           +W  ++IQSL++ Y EE    R  +L   V+ +  E  + + +LELI  +  LGLS  F+
Sbjct: 1   LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQ 60

Query: 81  EQIREILVDTV--AFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
           ++I+EIL   +           +E  DLY TAL F+LLRQHG+ ISQ +
Sbjct: 61  DEIKEIL-GVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDV 108
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3e-40  Score=253.40  Aligned_cols=107  Identities=40%  Similarity=0.591  Sum_probs=93.9

Q ss_pred             CCcccccccCcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-C
Q 041361           21 IWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDT-G   99 (127)
Q Consensus        21 ~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~-~   99 (127)
                      +|||+||+|+.+++.++++.+++++||++||+||.+..+++++|+|||+||||||+|||++||+++|++||+...... .
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~   80 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNN   80 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHC
T ss_pred             CCCchHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhcccc
Confidence            699999999988888899999999999999999988789999999999999999999999999999999995211000 1


Q ss_pred             CCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361          100 CLEVKDLYATALCFKLLRQHGYEISQGI  127 (127)
Q Consensus       100 ~~~~~dL~~~AL~FRLLRqhGy~VS~DV  127 (127)
                      .....|||+|||+|||||||||+|||||
T Consensus        81 ~~~~~DL~~~AL~FRLLRqhGy~VS~dv  108 (207)
T d1n1ba1          81 EVEKMDLYFTALGFRLLRQHGFNISQDV  108 (207)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred             ccccccHHHHHHHHHHHHHcCCCCCHHH
Confidence            1223699999999999999999999997
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure