Citrus Sinensis ID: 041381

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEEcccHHHHHHccccccEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHccHHHHHHHHHccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEEccccHccHHHcccccccccccccEEEEEEccHHHHHHccccccEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHcccccccccHHHEEcccccccHHHHHHHHEHHcccccccEcHHHHHHHHHcc
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLClggycsknckssykfgkkVSKKLQLVATLIddgdfavvaekvpqpavdkrplqptiigleSTFDKVWRCLVEGQFGIIglygmggkaSGIFNLLSKMKFLLLLDDIWERIdlakvgvpfpassrnaskivFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQetleshpdipeLAQTVAKECSGLPLALITTSramsskkrpeERSYAIQMLRRsayefpgmEKEVFRLLKFSYDSLSSDVLRSCLLYCSlfpedyqisKTELIECWIGE
mvqgwlsrveaveaevgeltrdtsqeIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEkvpqpavdkrplqptIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKvgvpfpassrnaskivFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALittsramsskkrpeerSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLfpedyqiskTELIECWIGE
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNllskmkfllllDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
**********AV***VGELT**TSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETL*****IPELAQTVAKECSGLPLALIT****************AIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWI**
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLR***********EVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTS************SYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
Q8RXS5 888 Probable disease resistan yes no 0.993 0.343 0.405 1e-73
Q9LMP6 851 Probable disease resistan no no 0.990 0.357 0.421 1e-72
O64973 889 Disease resistance protei no no 0.993 0.343 0.404 2e-72
P60838 894 Probable disease resistan no no 0.990 0.340 0.401 3e-70
Q8L3R3 885 Disease resistance protei no no 0.990 0.343 0.393 3e-68
Q9FG90 862 Probable disease resistan no no 0.990 0.352 0.412 2e-67
Q9FG91 848 Probable disease resistan no no 0.993 0.359 0.410 2e-67
Q9C8K0 854 Probable disease resistan no no 0.993 0.357 0.4 5e-66
Q940K0 889 Probable disease resistan no no 0.990 0.341 0.396 7e-64
Q9C8T9 898 Putative disease resistan no no 0.990 0.338 0.382 2e-63
>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2 Back     alignment and function desciption
 Score =  276 bits (706), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 212/367 (57%), Gaps = 62/367 (16%)

Query: 1   MVQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATL 60
           +VQGW+S+VEA+   V EL R  S ++++LCL G+CSKN  SSY++GK+V K ++ V  L
Sbjct: 70  VVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVL 129

Query: 61  IDDGDFAVVAEKVPQPAVDKRPLQPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGG---- 116
              GDFAVVAE+V    V++RP +P ++ ++   +  W  L+E + GI+GL+GMGG    
Sbjct: 130 RYQGDFAVVAERVDAARVEERPTRP-MVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKT 188

Query: 117 -----------KASGIFNLL------SKMKFLLLLDDIWE-------------------- 139
                      +  G F+++       +++   + D+IWE                    
Sbjct: 189 TLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASN 248

Query: 140 -------------------RIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFK 180
                              ++DL +VGVPFP S  N  KIVFTTRL ++CG M      +
Sbjct: 249 IYNVLKHKRFVLLLDDIWSKVDLTEVGVPFP-SRENGCKIVFTTRLKEICGRMGVDSDME 307

Query: 181 VECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPE 240
           V C A  DAW+LF KKVG+ TL SHP+IP +A+TVAK+C GLPLAL      M+ K+  +
Sbjct: 308 VRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQ 367

Query: 241 ERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTEL 300
           E   AI +L  SA EF GME E+  +LK+SYD+L S+ L+ C  YC+LFPED+ I K +L
Sbjct: 368 EWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDL 427

Query: 301 IECWIGE 307
           ++ WIGE
Sbjct: 428 VDYWIGE 434
Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2 Back     alignment and function description
>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 Back     alignment and function description
>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1 Back     alignment and function description
>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2 Back     alignment and function description
>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1 Back     alignment and function description
>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2 Back     alignment and function description
>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
24461861 890 NBS-LRR type disease resistance protein 0.996 0.343 0.516 1e-95
24461866 890 NBS-LRR type disease resistance protein 0.993 0.342 0.535 6e-94
24461865 892 NBS-LRR type disease resistance protein 0.996 0.343 0.513 2e-93
24461864 899 NBS-LRR type disease resistance protein 0.993 0.339 0.495 4e-92
224055915 880 cc-nbs-lrr resistance protein [Populus t 0.983 0.343 0.482 4e-83
24461863 889 NBS-LRR type disease resistance protein 0.993 0.343 0.486 1e-81
359482577 895 PREDICTED: probable disease resistance p 0.990 0.339 0.448 6e-79
147787894 864 hypothetical protein VITISV_040594 [Viti 0.980 0.348 0.456 9e-73
359482676 896 PREDICTED: probable disease resistance p 0.990 0.339 0.446 2e-72
30697771 888 CC-NBS-LRR class disease resistance prot 0.993 0.343 0.405 8e-72
>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/366 (51%), Positives = 232/366 (63%), Gaps = 60/366 (16%)

Query: 2   VQGWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLI 61
           VQ W+SRVE VE E      D +QEIEKLCLGGYCSKNCKSSYKFGK+V++KL+ + TL+
Sbjct: 72  VQVWVSRVETVETEADAFIGDGTQEIEKLCLGGYCSKNCKSSYKFGKQVARKLRDIKTLM 131

Query: 62  DDGDFAVVAEKVPQPAVDKRPLQPTI---------------------------------- 87
            +G F VVA+KVP+PAVD+RP +PT+                                  
Sbjct: 132 GEGVFEVVADKVPEPAVDERPTEPTVVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTT 191

Query: 88  ---------IGLESTFDKVWRCLVEGQFGI----------IGLYG-------MGGKASGI 121
                    +G  + FD V   +V     +          IGL         +  KA  I
Sbjct: 192 LLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNDAWKSRRIEQKALDI 251

Query: 122 FNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKV 181
           F +L    F++LLDDIW+R+DLAKVG+P P S  +ASK+VFTTR  +VCGLMEA K FKV
Sbjct: 252 FRILRGKNFVVLLDDIWQRVDLAKVGIPLPNSQTSASKVVFTTRSEEVCGLMEAHKKFKV 311

Query: 182 ECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEE 241
           EC +  DAWELF +KVG+ETL  H DI ELAQTV KEC GLPLALIT  RAM+ KK PEE
Sbjct: 312 ECLSGNDAWELFRQKVGEETLNCHHDILELAQTVTKECGGLPLALITIGRAMACKKTPEE 371

Query: 242 RSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELI 301
            SYAIQ+LR S+ +FPG+  EV+ LLKFSYD+L +D +RSCLLYC L+PED  ISK  L+
Sbjct: 372 WSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLV 431

Query: 302 ECWIGE 307
           +CWIGE
Sbjct: 432 DCWIGE 437

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata] Back     alignment and taxonomy information
>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata] Back     alignment and taxonomy information
>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata] Back     alignment and taxonomy information
>gi|224055915|ref|XP_002298700.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222845958|gb|EEE83505.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata] Back     alignment and taxonomy information
>gi|359482577|ref|XP_002278676.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787894|emb|CAN71751.1| hypothetical protein VITISV_040594 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482676|ref|XP_002281742.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|30697771|ref|NP_201107.2| CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|46395907|sp|Q8RXS5.2|DRL40_ARATH RecName: Full=Probable disease resistance protein At5g63020; AltName: Full=pNd11 gi|332010304|gb|AED97687.1| CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2166320 888 AT5G63020 [Arabidopsis thalian 0.618 0.213 0.513 4.1e-76
TAIR|locus:2036214 851 AT1G15890 [Arabidopsis thalian 0.618 0.223 0.497 1.9e-70
TAIR|locus:2201996 889 RPS5 "AT1G12220" [Arabidopsis 0.703 0.242 0.438 1.7e-69
TAIR|locus:2034770 894 SUMM2 "AT1G12280" [Arabidopsis 0.615 0.211 0.476 8.5e-69
TAIR|locus:2201986 885 RFL1 "AT1G12210" [Arabidopsis 0.710 0.246 0.413 9e-69
TAIR|locus:2170902 862 AT5G43740 [Arabidopsis thalian 0.618 0.220 0.497 9.5e-69
TAIR|locus:2170892 848 AT5G43730 [Arabidopsis thalian 0.618 0.224 0.497 1e-67
TAIR|locus:2031366 898 AT1G63350 "AT1G63350" [Arabido 0.560 0.191 0.526 2.5e-67
TAIR|locus:2008440 899 AT1G61180 [Arabidopsis thalian 0.618 0.211 0.460 2.4e-64
TAIR|locus:2132741 892 AT4G10780 [Arabidopsis thalian 0.618 0.213 0.455 1e-62
TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 510 (184.6 bits), Expect = 4.1e-76, Sum P(2) = 4.1e-76
 Identities = 98/191 (51%), Positives = 126/191 (65%)

Query:   117 KASGIFNXXXXXXXXXXXDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQ 176
             KAS I+N           DDIW ++DL +VGVPFP S  N  KIVFTTRL ++CG M   
Sbjct:   245 KASNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFP-SRENGCKIVFTTRLKEICGRMGVD 303

Query:   177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSK 236
                +V C A  DAW+LF KKVG+ TL SHP+IP +A+TVAK+C GLPLAL      M+ K
Sbjct:   304 SDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYK 363

Query:   237 KRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQIS 296
             +  +E   AI +L  SA EF GME E+  +LK+SYD+L S+ L+ C  YC+LFPED+ I 
Sbjct:   364 RTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIE 423

Query:   297 KTELIECWIGE 307
             K +L++ WIGE
Sbjct:   424 KNDLVDYWIGE 434
GO:0005634 "nucleus" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 5e-57
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score =  184 bits (470), Expect = 5e-57
 Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 4/194 (2%)

Query: 115 GGKASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLME 174
              A  I   L + +FLL+LDD+WE+ D  K+GVPFP    N S+++ TTR   V G M 
Sbjct: 87  SELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDG-ENGSRVIVTTRSESVAGRMG 145

Query: 175 AQ-KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233
              K  +VE    +++WELF  KV ++ L   P++ E+A+ + ++C GLPLAL      +
Sbjct: 146 GTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLL 205

Query: 234 SSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDY 293
           + K   +E  + ++ L        G+  EV  +L  SYD+L    L+ C LY +LFPEDY
Sbjct: 206 AFKSTVQEWEHVLEQLNNELAGRDGLN-EVLSILSLSYDNLPMH-LKRCFLYLALFPEDY 263

Query: 294 QISKTELIECWIGE 307
            I K +LI+ WI E
Sbjct: 264 NIRKEQLIKLWIAE 277

Length = 285

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.3
PRK04841 903 transcriptional regulator MalT; Provisional 98.07
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 97.88
PRK00411394 cdc6 cell division control protein 6; Reviewed 97.76
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 97.63
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 97.61
PRK06893229 DNA replication initiation factor; Validated 97.25
PRK13342 413 recombination factor protein RarA; Reviewed 97.21
PF05729166 NACHT: NACHT domain 97.2
TIGR02928365 orc1/cdc6 family replication initiation protein. M 97.2
COG3899 849 Predicted ATPase [General function prediction only 96.91
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 96.73
PRK05564313 DNA polymerase III subunit delta'; Validated 96.68
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 96.67
COG3903 414 Predicted ATPase [General function prediction only 96.42
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 96.37
PRK04195 482 replication factor C large subunit; Provisional 96.19
PRK09087226 hypothetical protein; Validated 96.07
PLN03025319 replication factor C subunit; Provisional 96.03
PRK00440319 rfc replication factor C small subunit; Reviewed 96.03
COG2256 436 MGS1 ATPase related to the helicase subunit of the 95.91
PRK07471365 DNA polymerase III subunit delta'; Validated 95.89
PRK12402337 replication factor C small subunit 2; Reviewed 95.87
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 95.76
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 95.71
PRK07940 394 DNA polymerase III subunit delta'; Validated 95.64
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 95.64
PF13173128 AAA_14: AAA domain 95.63
PRK13341 725 recombination factor protein RarA/unknown domain f 95.6
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 95.56
PRK08727233 hypothetical protein; Validated 95.56
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 95.3
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 95.29
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 95.28
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 95.17
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 94.97
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 94.89
PRK08084235 DNA replication initiation factor; Provisional 94.78
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 94.71
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 94.58
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 94.4
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 94.33
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 94.32
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 94.25
PRK09112351 DNA polymerase III subunit delta'; Validated 94.11
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 94.06
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 93.89
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 93.84
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 93.72
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 93.68
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 93.63
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 93.6
PRK08903227 DnaA regulatory inactivator Hda; Validated 93.36
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 93.35
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 93.02
PRK05642234 DNA replication initiation factor; Validated 92.88
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 92.84
PTZ00112 1164 origin recognition complex 1 protein; Provisional 92.83
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 92.53
PRK06620214 hypothetical protein; Validated 92.36
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 92.2
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 92.13
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 92.12
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 92.07
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 92.05
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 91.89
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 91.78
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 91.37
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 91.32
COG1373 398 Predicted ATPase (AAA+ superfamily) [General funct 91.31
PRK03992389 proteasome-activating nucleotidase; Provisional 90.92
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 90.79
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 90.76
CHL00095 821 clpC Clp protease ATP binding subunit 90.2
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 89.82
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 89.68
PRK14086617 dnaA chromosomal replication initiation protein; P 89.23
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 88.97
PRK07399314 DNA polymerase III subunit delta'; Validated 88.89
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 88.89
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 88.62
PHA02544316 44 clamp loader, small subunit; Provisional 88.38
KOG2028 554 consensus ATPase related to the helicase subunit o 88.19
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 88.13
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 87.84
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 87.74
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 87.67
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 86.38
PRK10865 857 protein disaggregation chaperone; Provisional 85.82
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 85.43
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 85.03
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 85.02
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 84.42
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 84.41
PRK06871325 DNA polymerase III subunit delta'; Validated 84.38
PRK07993334 DNA polymerase III subunit delta'; Validated 84.32
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 84.26
PRK05707328 DNA polymerase III subunit delta'; Validated 83.74
TIGR00362405 DnaA chromosomal replication initiator protein Dna 83.71
COG0593408 DnaA ATPase involved in DNA replication initiation 83.23
CHL00181287 cbbX CbbX; Provisional 82.85
CHL00176 638 ftsH cell division protein; Validated 81.6
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 80.35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-53  Score=419.84  Aligned_cols=304  Identities=48%  Similarity=0.841  Sum_probs=267.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHh----------------hhhcCccCCCchhhhhHHHHHHHHHHHHHhHHhcCC
Q 041381            2 VQGWLSRVEAVEAEVGELTRDTSQEIEK----------------LCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGD   65 (307)
Q Consensus         2 v~~Wl~~lr~~ayd~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~   65 (307)
                      +.+|.+.+++++|+++|.++.|..+...                -|+.++|+.+....+++++++-++...++.+..++.
T Consensus        57 ~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~  136 (889)
T KOG4658|consen   57 RVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV  136 (889)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc
Confidence            5789999999999999999998754432                244466777788888899999999999999988887


Q ss_pred             cceeeec-cCCCCcCCCCCCCce-eeccccHHHHHHHHhcCCceEEEEEcCchh--------------------------
Q 041381           66 FAVVAEK-VPQPAVDKRPLQPTI-IGLESTFDKVWRCLVEGQFGIIGLYGMGGK--------------------------  117 (307)
Q Consensus        66 ~~~~~~~-~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi--------------------------  117 (307)
                      |..+... .+......+|..+.. ||.+..++++++.|.+++..++||+||||+                          
T Consensus       137 ~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV  216 (889)
T KOG4658|consen  137 FEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV  216 (889)
T ss_pred             eecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE
Confidence            7766542 222222333333333 999999999999999998899999999999                          


Q ss_pred             ----------------------------------HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEe
Q 041381          118 ----------------------------------ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFT  163 (307)
Q Consensus       118 ----------------------------------~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivT  163 (307)
                                                        +..|.+.|++|||||||||||+..+|+.++.+ +|...+||||++|
T Consensus       217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~-~p~~~~g~KvvlT  295 (889)
T KOG4658|consen  217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVP-FPSRENGSKVVLT  295 (889)
T ss_pred             EEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCC-CCCccCCeEEEEE
Confidence                                              55688899999999999999999999999999 9998999999999


Q ss_pred             cCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHH
Q 041381          164 TRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEER  242 (307)
Q Consensus       164 tr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w  242 (307)
                      ||++.||.. +++...++++.|+++|||+||++.+|......++.++++|++++++|+|+|||++++|+.|+.+++.++|
T Consensus       296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW  375 (889)
T KOG4658|consen  296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW  375 (889)
T ss_pred             eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence            999999998 8888899999999999999999999988656777799999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-cccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381          243 SYAIQMLRRS-AYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE  307 (307)
Q Consensus       243 ~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~WiaE  307 (307)
                      +++.+.+.+. ..+.++..+.++++|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+||||
T Consensus       376 ~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaE  440 (889)
T KOG4658|consen  376 RRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAE  440 (889)
T ss_pred             HHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhc
Confidence            9999999887 455667788999999999999997 699999999999999999999999999998

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 7e-38
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 2e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-23
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 1e-08
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
 Score =  140 bits (353), Expect = 7e-38
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 15/190 (7%)

Query: 123 NLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQK-TFKV 181
            L+ +   L + DD+ +   +               + + TTR V++           +V
Sbjct: 238 ALIDRPNTLFVFDDVVQEETIRWAQ-------ELRLRCLVTTRDVEISNAASQTCEFIEV 290

Query: 182 ECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEE 241
                 + ++                  ++     +  SG P  L+   ++   K   + 
Sbjct: 291 TSLEIDECYDFLEAYGMPM--PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM 348

Query: 242 RSYAIQM----LRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISK 297
                ++    L       P   K +   L+   + LS +  RS L +  + P    I  
Sbjct: 349 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE-DRSALAFAVVMPPGVDIPV 407

Query: 298 TELIECWIGE 307
                    +
Sbjct: 408 KLWSCVIPVD 417
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.98
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.96
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.96
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 98.73
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.7
2fna_A357 Conserved hypothetical protein; structural genomic 98.68
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 98.48
3qfl_A115 MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- 98.35
2chg_A226 Replication factor C small subunit; DNA-binding pr 98.19
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 98.03
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 98.03
2v1u_A387 Cell division control protein 6 homolog; DNA repli 97.99
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 97.74
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 97.61
2chq_A319 Replication factor C small subunit; DNA-binding pr 97.45
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 97.4
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 97.3
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 97.26
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 96.46
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 96.36
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 96.24
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 96.01
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 95.78
3bos_A242 Putative DNA replication factor; P-loop containing 95.7
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 95.5
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 95.28
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 95.2
3pvs_A 447 Replication-associated recombination protein A; ma 95.03
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 95.02
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 94.69
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 94.39
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.17
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 94.11
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 94.02
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.0
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 93.91
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 93.62
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 93.55
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 93.37
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 93.23
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 91.95
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 91.3
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 91.19
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 90.74
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 90.16
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 89.39
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 88.53
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 88.1
2r62_A268 Cell division protease FTSH homolog; ATPase domain 88.04
2gno_A305 DNA polymerase III, gamma subunit-related protein; 86.1
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 84.0
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 83.77
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 83.2
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 82.67
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 82.59
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 82.33
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-35  Score=282.70  Aligned_cols=199  Identities=18%  Similarity=0.190  Sum_probs=161.7

Q ss_pred             eeccccHHHHHHHHhcC---CceEEEEEcCchh---------H-------------------------------------
Q 041381           88 IGLESTFDKVWRCLVEG---QFGIIGLYGMGGK---------A-------------------------------------  118 (307)
Q Consensus        88 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGi---------~-------------------------------------  118 (307)
                      |||+.++++|.++|..+   +.++|+|+||||+         .                                     
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999754   6899999999999         1                                     


Q ss_pred             ----------------------HHHHHHhcCC-eEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhccc-
Q 041381          119 ----------------------SGIFNLLSKM-KFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLME-  174 (307)
Q Consensus       119 ----------------------~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~-  174 (307)
                                            ..+++.|+++ ||||||||||+.+++ .     ++. .+||+||||||+..++..++ 
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~-----~~~-~~gs~ilvTTR~~~v~~~~~~  283 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R-----WAQ-ELRLRCLVTTRDVEISNAASQ  283 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H-----HHH-HTTCEEEEEESBGGGGGGCCS
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c-----ccc-cCCCEEEEEcCCHHHHHHcCC
Confidence                                  2344566775 999999999998865 1     211 26899999999999998876 


Q ss_pred             ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhccc
Q 041381          175 AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAY  254 (307)
Q Consensus       175 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~  254 (307)
                      ....|++++|+.++||+||.+.++...  .++.+.+++++|+++|+|+||||+++|+.|+.+ +   |+.+ +.+.+..+
T Consensus       284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~  356 (549)
T 2a5y_B          284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE  356 (549)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence            346799999999999999999987654  247788999999999999999999999999874 2   5443 45544433


Q ss_pred             cCCCChhHHHHHHHHhhcCCCCCchhHHHh-----------hhcCCCCCccccHHHHHHHhhcC
Q 041381          255 EFPGMEKEVFRLLKFSYDSLSSDVLRSCLL-----------YCSLFPEDYQISKTELIECWIGE  307 (307)
Q Consensus       255 ~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~WiaE  307 (307)
                      ...  .+.+..++.+||+.||+ ++|.||+           |||+||+++.|+    +++|+||
T Consensus       357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~  413 (549)
T 2a5y_B          357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV  413 (549)
T ss_dssp             HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred             ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence            211  23577889999999999 5999999           999999999999    8899985
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 4e-18
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (197), Expect = 4e-18
 Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 121 IFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVC-GLMEAQKTF 179
              L+ +   L + DD+ +             +     + + TTR V++     +  +  
Sbjct: 128 CNALIDRPNTLFVFDDVVQEET-------IRWAQELRLRCLVTTRDVEISNAASQTCEFI 180

Query: 180 KVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRP 239
           +V      + ++                  ++     +  SG P  L+   ++   K   
Sbjct: 181 EVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFE 238

Query: 240 EERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCL 283
           +      ++  R           V  +  +SY SL+   L+ C+
Sbjct: 239 KMAQLNNKLESRG-------LVGVECITPYSYKSLAMA-LQRCV 274

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 100.0
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.28
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 97.02
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 97.0
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 96.87
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 96.63
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 96.62
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.22
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 96.11
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.99
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 95.42
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 95.16
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 94.76
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 93.29
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 93.23
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 93.17
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 92.8
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 90.79
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 90.73
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 89.32
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 88.22
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 83.96
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=264.50  Aligned_cols=186  Identities=18%  Similarity=0.151  Sum_probs=157.7

Q ss_pred             CCceeeccccHHHHHHHHhc---CCceEEEEEcCchh-------------------------------------------
Q 041381           84 QPTIIGLESTFDKVWRCLVE---GQFGIIGLYGMGGK-------------------------------------------  117 (307)
Q Consensus        84 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGi-------------------------------------------  117 (307)
                      ++.++||+.++++|+++|.+   .+.++|+|+||||+                                           
T Consensus        19 ~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~   98 (277)
T d2a5yb3          19 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD   98 (277)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred             CCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHH
Confidence            56789999999999999974   36889999999999                                           


Q ss_pred             --------------------------HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhh
Q 041381          118 --------------------------ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCG  171 (307)
Q Consensus       118 --------------------------~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~  171 (307)
                                                ...+.+.+.++|+|+||||||+..+|..+.       ..||+||||||+..++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~-------~~~srilvTTR~~~v~~  171 (277)
T d2a5yb3          99 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-------ELRLRCLVTTRDVEISN  171 (277)
T ss_dssp             HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-------HTTCEEEEEESBGGGGG
T ss_pred             HHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc-------ccCceEEEEeehHHHHH
Confidence                                      223566778899999999999999988653       24799999999999998


Q ss_pred             ccccc-ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHh
Q 041381          172 LMEAQ-KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLR  250 (307)
Q Consensus       172 ~~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~  250 (307)
                      .+... +.|++++|+.+|||+||.+.++...  ..+..++++++|+++|+|+|||++++|+.|+. ++.++|.+..+.|+
T Consensus       172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~  248 (277)
T d2a5yb3         172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLE  248 (277)
T ss_dssp             GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHH
T ss_pred             hcCCCCceEECCCCCHHHHHHHHHHHhCCcc--CchhhHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHh
Confidence            76544 6899999999999999999887654  34567889999999999999999999999987 78999999888887


Q ss_pred             hccccCCCChhHHHHHHHHhhcCCCCCchhHHHhhh
Q 041381          251 RSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYC  286 (307)
Q Consensus       251 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~  286 (307)
                      +...      .++..++.+||+.||+ ++|.||.++
T Consensus       249 ~~~~------~~v~~il~~sY~~L~~-~lk~c~~~l  277 (277)
T d2a5yb3         249 SRGL------VGVECITPYSYKSLAM-ALQRCVEVL  277 (277)
T ss_dssp             HHCS------STTCCCSSSSSSSHHH-HHHHHHHTS
T ss_pred             cCcH------HHHHHHHHHHHhcccH-HHHHHHHhC
Confidence            6432      2677889999999999 699999864
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure