Citrus Sinensis ID: 041391

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700----
Protein Sequence
MASPSPSPQPTDSNSSKIQLLIKTITDFHADLSISSIQDYINSQKSGSDSSDNKGDSKKKDGRNRHQPLLGKLYRRLPSEITTGKKKSSSKEEKEEKSKSKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKNSSII
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHHHHHHHHcccccEEcccccccccccEEEccHHHHHHHHHcccccEEEEEccccccccccEEEEEEEEEccccccccccHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEccccccccccccHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccHHccccccEEEEEEcccccccccHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccEEcEEccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHccccccccccccccccHHHHHHHHHHHHHcccccHHHHccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHccHHccccccccccccEEEEHccccHHHHHHHHEEEEcccccEEcHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEccccccccHHcHHHHccccccEEEEcccccccccccEEcccccccccccccccccEEEEcccccHccccHHHccccccEEEEEcccccHHHccHHHcccccccEEEEcccccHccccccccccHHccEEcEEEccccccccccccHHHccccccHccEEEEEcccccccHHHHHHHHcccccccEEEEEccccccccccHcccccccccEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccccEEcccccccccccccEEEEcccHHHHHccHHHccccccccEEEEcccccHcccccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
maspspspqptdsnssKIQLLIKTITDFHADLSISSIQDYInsqksgsdssdnkgdskkkdgrnrhqplLGKLYrrlpseittgkkkssskeekeEKSKSKREVNaatnsksnndlkqKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEklssgsiqseqCLDESREEVrnfedkvplvnkysstesdglkQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWcftvfpnnaVVRKRLVENWLITEDKNRAEENREEknkaveddtqeKNIDDILKELERegfivpvrkkrrkdvnnrfkmdplarlavinsrkpedlWCKWARleglekgstQLLTVSALVNvseqfpdfqskwfsnlKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGvygireipssianlsnlrvLDLRCCYYltklpkgldslkkltyldisecYLIEYMPKELSSLSELQVLKGflvtdakpndkictLEDLGNSLKELRKLSIyvnnnaipIEKLSESLEKFKNLLKLKIAWGagyskcrnqegnnehnkkqedeaetqgkggldgtfgqkDRLLekldlhcfpleslpnwlsglnlRKLYIRggqlrslqgdthkkysTVKVLRLRYLNELNVNWRELQalfpdleylekfncpmisffpcdangvwikesspegsknssii
Flexible Loop (DISEMBL)
maspspspqptdsnSSKIQLLIKTITDFHADLSISSIQDYInsqksgsdssdnkgdskkkdgrnrhqpllgklyrrlpseittgkkkssskeekeekskskrevnaatnsksnndlkqkdnlVKKYLdkikkdstenrekLGELIKDHIRRFEGILeklssgsiqseqCLDESREevrnfedkvplvnkysstesdglkqsEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENwlitedknraeenreeknkaveddtqeknIDDILkeleregfivpvrkkrrkdvnnrfkmdplarlavinsrkpedLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSsianlsnlrVLDLRCCYYLTKlpkgldslkkLTYLDISECYLIEYMPKELSSLSELQVLKGFlvtdakpndkICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNqegnnehnkkqedeaetqgkggldgTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGqlrslqgdthkkystvKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIkesspegsknssii
Low Complexity Region (SEG)
MASPSPSPQPTDSNSSKIQLLIKTITDFHADLSISSIQDYINSQksgsdssdnkgdskkkdgRNRHQPLLGKLYRRLPSEITTGkkkssskeekeekskskREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDknraeenreeknkaVEDDTQEKNIDDILKELEREGFIVPVrkkrrkDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKNSSII
Disordered region (IsUnstruct)
*****************IQLLIKTITDFHADLSISSIQDY*******************************************************************************************************LIKDHIRRFEGIL*********************************************EIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLIT*****************************LKELEREGFIVPVRK****DVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC******************************QKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWI**************
Disordered Region (DISOPRED)
********************LIKTITDFHADLSISSIQ******************************LLGKLYRRLPSEITT****************SKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIR**********SGSIQSEQCLDE*********DKVPLVNKYSSTESDGLKQSEIVELMEMFINF******DEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEE**********DDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLE***KGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN****T***LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG*******************EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKNSSII
Disordered Region (DISEMBL)
***************SKIQLLIKTITDFHADLSISSIQDYI**********************NRHQPLLGKLYRRLPSE*******************************SNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEKLS****************VRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNR***************TQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRN********************GGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKE************
Disordered Region (DISPRO)
**************SSKIQLLIKTITDFHADLSISSIQDYINSQ*********************HQPLLGKLYRRLPSEITTGK**********************TNSKSNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRA************DDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKE************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPSPSPQPTDSNSSKIQLLIKTITDFHADLSISSIQDYINSQKSGSDSSDNKGDSKKKDGRNRHQPLLGKLYRRLPSEITTGKKKSSxxxxxxxxxxxxxxxxxxxxxKSNNDLKQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDxxxxxxxxxxxxxxxxxxxxxKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKNSSII
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	704	2.2.26 [Sep-21-2011]
Q38834	852	Disease resistance RPP13-	no	no	0.400	0.330	0.275	5e-17
Q7XA40	992	Putative disease resistan	N/A	no	0.142	0.100	0.372	1e-08
O81825	919	Probable disease resistan	no	no	0.169	0.129	0.375	3e-07
Q7XA42	979	Putative disease resistan	N/A	no	0.190	0.136	0.333	1e-06
Q7XA39	988	Putative disease resistan	N/A	no	0.160	0.114	0.364	2e-06
Q9LRR4	1054	Putative disease resistan	no	no	0.299	0.200	0.268	2e-06
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.196	0.092	0.313	9e-06
P70587	1490	Leucine-rich repeat-conta	yes	no	0.196	0.092	0.313	9e-06
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.167	0.103	0.328	9e-06
O49318	1124	Probable leucine-rich rep	no	no	0.210	0.131	0.296	9e-06

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 150/330 (45%), Gaps = 48/330 (14%)

Query: 375 SKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS 434
           +K F++ K ++VL +      +K   +   S+ L E+ ++  L  LSL   + + + P S
Sbjct: 552 AKKFTDCKYLRVLDI------SKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRS 605

Query: 435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494
           + +L NL++LD   C  L +L   +   KKL  LD++ C  +E  PK + SL +L+VL G
Sbjct: 606 MEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLG 665

Query: 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554
           F    A+ N+  C L ++ N L  LRKL + +       E+  +SL     L+ + I   
Sbjct: 666 F--KPARSNNG-CKLSEVKN-LTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISI--- 718

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS 614
                C +  G++   K        Q               L +L L  +P +S P+WLS
Sbjct: 719 ----NCYDSYGDDLITKIDALTPPHQ---------------LHELSLQFYPGKSSPSWLS 759

Query: 615 GLN---LRKLYIRGGQLRSLQ------GDTHKKYSTVKVLRLRYLNELNVNWRELQALFP 665
                 LR + I  G L  +Q       +TH +   ++ L L  L++L+++W  LQ   P
Sbjct: 760 PHKLPMLRYMSICSGNLVKMQEPFWGNENTHWR---IEGLMLSSLSDLDMDWEVLQQSMP 816

Query: 666 DLEYLEKFNCPMISFFPCD----ANGVWIK 691
            L  +    CP +  F  +      GVW+K
Sbjct: 817 YLRTVTANWCPELESFAIEDVGFRGGVWMK 846

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 394 NSAKHFVEVQGSKFLKEL-KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYL 452
            S K F     +  L+E+ KN+  L  LS+  +  ++E+P+S+A+L+NL+ LD+R CY L
Sbjct: 859 TSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYAL 918

Query: 453 TKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLK 493
             LP +GL+ L  LT L +  C +++ +P+ L  L+ L  LK
Sbjct: 919 ESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLK 960

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 17/136 (12%)

Query: 369 QFPDFQSKWFSNLKKVKVLH--LGRWKNSAKHFVE-----VQGSKFLKELKN-----MSA 416
           +FP  Q K+ S++++V ++   L R  N+    VE     +QG+  +KE+ N        
Sbjct: 462 EFP--QDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPN 519

Query: 417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI 476
           LR+L L GV  IR +P S +NL +LR L LR C  L  LP  L+SL KL +LD+ E  + 
Sbjct: 520 LRILDLSGVR-IRTLPDSFSNLHSLRSLVLRNCKKLRNLP-SLESLVKLQFLDLHESAIR 577

Query: 477 EYMPKELSSLSELQVL 492
           E +P+ L +LS L+ +
Sbjct: 578 E-LPRGLEALSSLRYI 592

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 16/150 (10%)

Query: 399 FVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458
           F EV  S     L+   +LR+L+L+    + ++PSSI +L +LR LDL   + +  LPK 
Sbjct: 509 FAEVVSSYSPSLLQKFVSLRVLNLRN-SNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKR 567

Query: 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQ--VLKGFLVTDAKPNDKICT-LEDL--- 512
           L  L+ L  LD+  C  +  +PK+ S L  L+  +L G  +T   P   + T L+ L   
Sbjct: 568 LCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCF 627

Query: 513 ------GNSLKELRKLSIYVNNNAIPIEKL 536
                 G+ L EL+ L++Y    +I I KL
Sbjct: 628 VIGKRKGHQLGELKNLNLY---GSISITKL 654

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 399 FVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458
           F  V  S     LK   +LR+L+L     + ++PSSI +L +LR LDL C  +   LP+ 
Sbjct: 511 FAAVVSSYSPSLLKKFVSLRVLNLS-YSKLEQLPSSIGDLLHLRYLDLSCNNF-RSLPER 568

Query: 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQ--VLKGFLVTDAKPNDKICT-LEDLG 513
           L  L+ L  LD+  CY +  +PK+ S LS L+  V+ G  +T   P   + T L+ LG
Sbjct: 569 LCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLG 626

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 31/242 (12%)

Query: 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI 435
           K    L +++VL L  +K      +      F K   N+S  R L L     + ++P S+
Sbjct: 572 KLLPTLTRLRVLSLSHYK------IARLPPDFFK---NISHARFLDLSRT-ELEKLPKSL 621

Query: 436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
             + NL+ L L  C  L +LP  + +L  L YLD+    L + MP+    L  LQ L  F
Sbjct: 622 CYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTKLRQ-MPRRFGRLKSLQTLTTF 680

Query: 496 LV--TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES-LEKFKNLLKLKIA 552
            V  +D     ++  L DL        KL I      + +   +E+ L   K+L ++   
Sbjct: 681 FVSASDGSRISELGGLHDLHG------KLKIVELQRVVDVADAAEANLNSKKHLREIDFV 734

Query: 553 WGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW 612
           W  G S       NN +  + ++EAE   K        +  R +EKL +  +     P+W
Sbjct: 735 WRTGSSSSE----NNTNPHRTQNEAEVFEK-------LRPHRHIEKLAIERYKGRRFPDW 783

Query: 613 LS 614
           LS
Sbjct: 784 LS 785

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 44/182 (24%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLD------------LRCCYYLT--- 453
           K+L N  ALR LS+     +  +P+SIA+L NL+ LD            ++CC  LT   
Sbjct: 63  KQLFNCQALRKLSIPD-NDLSSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE 121

Query: 454 -------KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL---KGFLVTDAKPN 503
                  KLP G   L  LT L +++ +L E++P     L +L++L   +  L T  K  
Sbjct: 122 ASVNPISKLPDGFTQLLNLTQLYLNDAFL-EFLPANFGRLVKLRILELRENHLKTLPKSM 180

Query: 504 DKICTLE--DLGNS-----------LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
            K+  LE  DLGN+           ++ LR+L  +++NNA+ +  L  S+ K K L+ L 
Sbjct: 181 HKLAQLERLDLGNNEFSELPEVLDQIQNLREL--WMDNNALQV--LPGSIGKLKMLVYLD 236

Query: 551 IA 552
           ++
Sbjct: 237 MS 238

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 44/182 (24%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLD------------LRCCYYLT--- 453
           K+L N  ALR LS+     +  +P+SIA+L NL+ LD            ++CC  LT   
Sbjct: 63  KQLFNCQALRKLSIPD-NDLSSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE 121

Query: 454 -------KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL---KGFLVTDAKPN 503
                  KLP G   L  LT L +++ +L E++P     L +L++L   +  L T  K  
Sbjct: 122 ASVNPISKLPDGFTQLLNLTQLYLNDAFL-EFLPANFGRLVKLRILELRENHLKTLPKSM 180

Query: 504 DKICTLE--DLGNS-----------LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
            K+  LE  DLGN+           ++ LR+L  +++NNA+ +  L  S+ K K L+ L 
Sbjct: 181 HKLAQLERLDLGNNEFSELPEVLDQIQNLREL--WMDNNALQV--LPGSIGKLKMLVYLD 236

Query: 551 IA 552
           ++
Sbjct: 237 MS 238

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 25/143 (17%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVE------------------VQGSKFLKE 410
           Q P+F       +K +KVL LGR  NS   +V                   + GS F  E
Sbjct: 395 QIPEF----LGYMKALKVLSLGR--NSFSGYVPSSMVNLQQLERLNLGENNLNGS-FPVE 447

Query: 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDI 470
           L  +++L  L L G      +P SI+NLSNL  L+L    +  ++P  + +L KLT LD+
Sbjct: 448 LMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDL 507

Query: 471 SECYLIEYMPKELSSLSELQVLK 493
           S+  +   +P ELS L  +QV+ 
Sbjct: 508 SKQNMSGEVPVELSGLPNVQVIA 530

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRV 443
           VK+  +  W+N    F+        K++ N+++L  L+L G   +  IPS I N+ +L+ 
Sbjct: 253 VKLQEVILWQNKFSGFIP-------KDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKK 305

Query: 444 LDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL--VTDAK 501
           L L        +PK L  L K+  +D SE  L   +P ELS +SEL++L  F   +T   
Sbjct: 306 LYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGII 365

Query: 502 PNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
           PN+         + L+ L KL + +N+   PI    ++L   + L
Sbjct: 366 PNEL--------SKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQL 402

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
224116254	547	predicted protein [Populus trichocarpa]	0.627	0.808	0.402	3e-82
297791181	738	hypothetical protein ARALYDRAFT_494434 [	0.772	0.737	0.332	3e-77
186529624	771	RNI-like superfamily protein [Arabidopsi	0.642	0.586	0.359	1e-74
255571829	720	conserved hypothetical protein [Ricinus	0.630	0.616	0.378	1e-69
297791175	768	hypothetical protein ARALYDRAFT_356455 [	0.651	0.597	0.351	1e-69
20453164	373	AT5g45500/MFC19_17 [Arabidopsis thaliana	0.477	0.900	0.419	2e-68
414880124	622	TPA: hypothetical protein ZEAMMB73_80880	0.606	0.686	0.354	9e-68
242058981	622	hypothetical protein SORBIDRAFT_03g03713	0.599	0.678	0.364	1e-67
357125440	625	PREDICTED: disease resistance RPP13-like	0.623	0.702	0.343	1e-64
255571831	426	protein binding protein, putative [Ricin	0.494	0.816	0.398	4e-64

>gi|224116254|ref|XP_002317252.1| predicted protein [Populus trichocarpa] gi|222860317|gb|EEE97864.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 199/494 (40%), Positives = 276/494 (55%), Gaps = 52/494 (10%)

Query: 226 IINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVE 285
            ++F+ ++ +L    K CL CF+VFP N+VV+KRL+  W + E            +  V+
Sbjct: 52  FVDFKERYSSLDLRDKLCLLCFSVFPENSVVKKRLLMYWWVGEG---------FIDPKVD 102

Query: 286 DDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVI------------N 333
            D  E+  D ILK+   +GF+ P  KKRR      F+M  L R AVI            +
Sbjct: 103 ADKPEEVADGILKKFLEKGFVEPEIKKRRL---VGFRMHSLIRYAVIFVAEKVGFFHFDS 159

Query: 334 SRKPEDLWCKWAR---LEGLEKGSTQLL--------TVSALVNVSEQFPDFQSKWFSNLK 382
              P   +    R   ++  EK S Q L        T+ AL NV++ +PD  ++WFS ++
Sbjct: 160 MGNPTGNFSTSQRACLIKTGEKYSRQALLDLESKPETLHALFNVNDPYPDLNTEWFSRMR 219

Query: 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLR 442
            + VL LGR     +H VEV+ ++FLK L+NM  L+ LSLQG+  I E+P +I  L NL+
Sbjct: 220 NINVLCLGR----QQHHVEVESTEFLKGLRNMKHLKFLSLQGISRINELPETIQKLVNLK 275

Query: 443 VLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKP 502
           +LDL  C+ L  +P+ + SL+KLT+LDISECY+++YMPK L SL+ELQVLKGF++++ K 
Sbjct: 276 ILDLNSCHNLEAIPENIVSLQKLTHLDISECYMLDYMPKGLGSLTELQVLKGFVISNLKI 335

Query: 503 NDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRN 562
            +   TL+DL   L +LRKLSIY      P  K  ++L     L KL I WG G S  + 
Sbjct: 336 KNA-GTLDDL-RGLPKLRKLSIYTTKKDFPRVKDLKALRHITALQKLTIEWG-GKSGVKK 392

Query: 563 QEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL---NLR 619
           +E  N+        A    +  +          L KLDL C+P    P WL  L   NL+
Sbjct: 393 EEIRNDSRGLTRSNAFR--RENIPAAIPDLPEHLVKLDLQCYPETKAPEWLLPLRLKNLQ 450

Query: 620 KLYIRGGQLRSL---QGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP 676
           KLYIRGG L +L   QG  HK    VK+LRL++L EL ++WR L   FP L YLEKF CP
Sbjct: 451 KLYIRGGHLSALGQAQGGNHK--WNVKILRLKFLKELKMDWRVLHDAFPHLIYLEKFKCP 508

Query: 677 MISFFPCDANGVWI 690
            ++FFPCD  GVW+
Sbjct: 509 KLTFFPCDGTGVWL 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791181|ref|XP_002863475.1| hypothetical protein ARALYDRAFT_494434 [Arabidopsis lyrata subsp. lyrata] gi|297309310|gb|EFH39734.1| hypothetical protein ARALYDRAFT_494434 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 212/637 (33%), Positives = 322/637 (50%), Gaps = 93/637 (14%)

Query: 138 REKLGELIKDHIRRFEGILEKLSSG---------SIQSEQCLDESREEVRNFEDKVPLV- 187
           R ++ E +  HIR  E +L+K+  G         ++  ++ LD+  +++ N   +VPL+ 
Sbjct: 106 RTEVAEEVLKHIRPLELLLDKVEKGEKDPSKPPLTLGMKKDLDDINKKIFNLMCQVPLLP 165

Query: 188 ----NKYSSTESDGLKQSE---IVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNES 240
               N   S   DG   +    IV L  +  N +E          ++    +F  L N+ 
Sbjct: 166 NKRKNAKGSDADDGEGDNNGKGIVCLPGIHAN-KEDLKRRAVFRYVLG---EFEELSNQQ 221

Query: 241 KFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKEL 300
           KFCL  F+VFP N  V + ++  W + E    +++   EK     +D     + DIL + 
Sbjct: 222 KFCLLSFSVFPENQEVNRTMLMYWWMGEGILSSKDISSEKGILKPEDV----VKDILDDF 277

Query: 301 EREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLE-------GLEK- 352
           +    I PV  KR K+  N +KM P    +V+   K   L+  + + E       GL K 
Sbjct: 278 KDRNLIEPVEIKR-KEKPNSYKMAPFVHSSVVLISKEIGLFDMYDKKEKPTMKQSGLHKV 336

Query: 353 ----GSTQ-----------LLTVSALVNVSEQFPDFQSKWF--------------SNLKK 383
               GS+            +  +  + N+SE+FPDF  KWF              +   K
Sbjct: 337 CLVEGSSSQQEAKAKKMADVDQIETVFNISERFPDFTFKWFFEDKPTRNKLTLSKATYPK 396

Query: 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRV 443
           +KVL+LGRW+ +AK  +EV+  + +K LK+M  L+LLS QG+  I  + +++  L  L +
Sbjct: 397 LKVLYLGRWERTAKRHIEVENPELMKNLKHMIKLKLLSFQGISRIERLDNAVCKLRELII 456

Query: 444 LDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN 503
           LDLR CY L KLP  +DSLK L YLDI++CY+I+ MPK LS L  L+VLKGF+V+DA  +
Sbjct: 457 LDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDAVDD 516

Query: 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ 563
           + +CTL +L   LK+LRKLSI +N     I  +  +++ FK L KLK+AWG   +  +++
Sbjct: 517 ETVCTLAELV-ELKKLRKLSISINKEEFSIVDVFVAVKNFKKLEKLKVAWGGINTHPQDK 575

Query: 564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE----------------------KLDL 601
             + E   ++    E +    +     +K  +LE                      KLDL
Sbjct: 576 GVDGEKGDRKVKPKEEENDNAIAAADNKKPTILERAATMFRKEKGPKDPELPETLKKLDL 635

Query: 602 HCFPLESLPNWLSGLNLR---KLYIRGGQLRSLQGDTHKKYST---VKVLRLRYLNELNV 655
            CFP + LP WL   NLR   KLYI+GG   +  G +     T   V VLRL++L +L V
Sbjct: 636 QCFPGKLLPEWLEPDNLRNVEKLYIKGGTKLTGFGKSLPIVKTKCKVTVLRLKFLPKLKV 695

Query: 656 NWREL-QALFPDLEYLEKFNCPMISFFPCDANGVWIK 691
            WR+L +  FP+L++LEK+ CP +S  PCD  G+W K
Sbjct: 696 EWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRK 732

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186529624|ref|NP_199363.3| RNI-like superfamily protein [Arabidopsis thaliana] gi|334188211|ref|NP_001190474.1| RNI-like superfamily protein [Arabidopsis thaliana] gi|9758740|dbj|BAB09178.1| unnamed protein product [Arabidopsis thaliana] gi|332007877|gb|AED95260.1| RNI-like superfamily protein [Arabidopsis thaliana] gi|332007878|gb|AED95261.1| RNI-like superfamily protein [Arabidopsis thaliana]

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 275/517 (53%), Gaps = 65/517 (12%)

Query: 233 FRNLKNESKFCLWCFTVFPNNAVVRKRLVENW-----LITEDKNRAEENREEKNKAVEDD 287
           F  L ++ K CL  F VFP N  V + ++  W     +++     ++E  EE     ED 
Sbjct: 256 FEELSDQRKICLLTFAVFPENQEVNRTMLMYWWMGEGILSTKDISSQEGTEEVILKPED- 314

Query: 288 TQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKW--- 344
                +  ILK+      I PV  KR+ + ++ +KM P    +V+   K   L+  +   
Sbjct: 315 ----VVKVILKDFTDRNLIEPVEIKRKVEPSS-YKMAPFVHASVVLISKEIGLFDMYDIK 369

Query: 345 --------------------ARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFS----- 379
                               ++ E   K    +  +  + NVSE+FPDF  KWFS     
Sbjct: 370 DKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDVDHIETVFNVSERFPDFTFKWFSEDKPT 429

Query: 380 ---------NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE 430
                      +K+KV +LGRW+ +AK  +EV+  + +K LK M  L+LLS QG+  I  
Sbjct: 430 RNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKLLSFQGISRIER 489

Query: 431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490
           +  ++  L +L +LDLR CY L KLP  +DSLK L YLDI++CY+I+ MPK LS L  L+
Sbjct: 490 LDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLE 549

Query: 491 VLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
           VLKGF+V+DA   + +CTL +L + LK+LRKLSI +N     I+ +  +++ FK L KLK
Sbjct: 550 VLKGFVVSDATDEETVCTLAELVH-LKKLRKLSISINKENFSIDDVFVAVKSFKKLEKLK 608

Query: 551 IAWGA----GYSKCRNQEGNNEHNKKQE-----DEAETQGKGGLDGTFGQKDRLLEKLDL 601
           +AWG        K  + E  +E+ K +E     + A T  +   D T  +  + L+KLDL
Sbjct: 609 VAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDL 668

Query: 602 HCFPLESLPNWLSG---LNLRKLYIRGGQLRSLQGDTHKKYST---VKVLRLRYLNELNV 655
            CFP E LP WL     LN+ KLYI+GG   +  G +    ++   V VLRL++L +L V
Sbjct: 669 QCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKV 728

Query: 656 NWREL-QALFPDLEYLEKFNCPMISFFPCDANGVWIK 691
            WR+L +  FP+L++LEK+ CP +S  PCD  G+W K
Sbjct: 729 EWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRK 765

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571829|ref|XP_002526857.1| conserved hypothetical protein [Ricinus communis] gi|223533756|gb|EEF35488.1| conserved hypothetical protein [Ricinus communis]

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 188/497 (37%), Positives = 259/497 (52%), Gaps = 53/497 (10%)

Query: 229 FRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDT 288
           F   F  L    + CL CF+VFP  AVV KR++  W + E       N         DDT
Sbjct: 205 FEETFERLTPSYQHCLLCFSVFPEGAVVSKRMLMYWWVGEGFIFPAVNNY-------DDT 257

Query: 289 QEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVI------------NSRK 336
                D+IL    ++ +I PV +++R      F+M  L R AV+            ++  
Sbjct: 258 A----DEILSIFFKKDYIQPVIEQQRL---VGFRMHALIRFAVVFLAEKLGFFNFNSTWN 310

Query: 337 PED--LWCKWARLEGLEKGSTQLLTVS-------ALVNVSEQFPDFQSKWFSNLKKVKVL 387
           P    L C  A +    +G+++ + +S        L N+S++FPDF+ KWF  ++ VKVL
Sbjct: 311 PTGDFLSCGRAIMVENAEGNSRDIIMSLNPEKLITLFNISDRFPDFKVKWFLKMRNVKVL 370

Query: 388 HLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLR 447
            LGR  +   H +EV+ +KFLK LKNM  L  LSLQGV  I  +P+ +  L NLR LDL+
Sbjct: 371 CLGRCADPTSH-IEVEDTKFLKGLKNMRHLTSLSLQGVSRIERLPNDVTKLINLRTLDLK 429

Query: 448 CCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC 507
            C+ L  LP  + SL+ LT+LDISECYL++ MPK +  L +LQVLKGF+VTD K      
Sbjct: 430 ACHNLEALPDSIGSLRNLTHLDISECYLLDRMPKGIELLWQLQVLKGFVVTDKKMKGA-G 488

Query: 508 TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY--------SK 559
           +L DL + L  LRKLSI       P  K  ++L+  K+L KL I W            S 
Sbjct: 489 SLSDL-SRLSYLRKLSISTTKRDFPTAKELDALQDCKSLQKLTIIWAGTSDAKQLTRPSA 547

Query: 560 CRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL---LEKLDLHCFPLESLPNWLSGL 616
            +    +N   +K +           +       +L   LEKLDL  FP    P+WL   
Sbjct: 548 LKGLSRSNAFGRKNDQLNRALTLVNEESIMALSPKLPKTLEKLDLQFFPGTEAPSWLMPS 607

Query: 617 NLR---KLYIRGGQLRSL-QGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEK 672
            L+   KLYI GG L+ L Q +       VK+L L+ L EL+++W+ELQ  FP L YLEK
Sbjct: 608 KLKYLEKLYISGGNLQGLNQAEDEGHKWNVKILCLKSLPELSMHWKELQDAFPKLVYLEK 667

Query: 673 FNCPMISFFPCDANGVW 689
            NCP ++FFPC+ NGVW
Sbjct: 668 DNCPNLTFFPCEENGVW 684

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791175|ref|XP_002863472.1| hypothetical protein ARALYDRAFT_356455 [Arabidopsis lyrata subsp. lyrata] gi|297309307|gb|EFH39731.1| hypothetical protein ARALYDRAFT_356455 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 185/526 (35%), Positives = 270/526 (51%), Gaps = 67/526 (12%)

Query: 212 NFREKFGFDEFMEMIINFRNKFRNLKN-ESKFCLWCFTVFPNNAVVRKRLVENWLITEDK 270
           +F+   GF++ +E       KF+ L +   K CL  F VFP N  V + ++  W I E  
Sbjct: 272 DFKHSSGFEDVVE-------KFQGLDDFTQKLCLLSFAVFPENREVTRTMLMYWWIGEG- 323

Query: 271 NRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLA 330
                        ++ D  E ++  IL     +  + PV  +R K + N +KM+P    A
Sbjct: 324 ------------FIDCDDSENSVTRILDAFSTKKLLEPVEDER-KLLPNSYKMEPHVHSA 370

Query: 331 VINSRKPEDLW-------------------CKWARLEGLEKGSTQLL---TVSALVNVSE 368
           VI   K  DL+                   C       L    T  +   T+  + N SE
Sbjct: 371 VIYLAKKMDLFELYNHNGKLIMKKSSKKKVCLVKDSSLLRDAKTSAMKPKTLQTVFNSSE 430

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI 428
           +FPDF  KWF  +  ++VL+LGRW+  A+  +EV+ ++FLK +K++  LRL S QG+ GI
Sbjct: 431 RFPDFTFKWFPLMDSIRVLYLGRWERMAERHIEVESTEFLKNMKSLKNLRLASFQGISGI 490

Query: 429 REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE 488
           ++I +SI  L  L +LDLR CY L  LP  + SL+ L YLD+SEC  ++ MP     LS 
Sbjct: 491 KKIDNSICALQKLMILDLRACYDLQVLPNDIGSLENLIYLDVSECLKLDCMPDRFEKLSG 550

Query: 489 LQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLK 548
           LQVLKGF+++ +  ++  C ++ L N    LRKLSI + N     E L ESL   K L  
Sbjct: 551 LQVLKGFVISQSD-DEHNCAVKHLVN----LRKLSITIKNYRFKAENLIESLRDLKQLES 605

Query: 549 LKIAWGAGYS-KCRNQEGNNEH-------NKKQEDEAETQGKGGLDGTFGQKDRLLEKLD 600
           L  AW A +    R  E   E        N+ ++     Q    +D T+   D  L+KL+
Sbjct: 606 LTFAWRARFPVDDRRGEETKEAKLLMGMGNQTKKWGIRWQKDQSIDDTYKFPDS-LKKLE 664

Query: 601 LHCFPLESLPNWLSGLN---LRKLYIRGGQLRSLQGD---THKKYSTVKVLRLRYLNELN 654
           L CFP    P+WL+  +   L++L I+GG+L  +  +   T  K++ V++LRL+YL+E  
Sbjct: 665 LECFPETEPPSWLNPKDLKELKRLSIKGGKLSRMSDESRNTEDKWA-VEILRLKYLHEFK 723

Query: 655 VNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKN 700
           V WR+L+ LFP +  LEK+ CP I+F P D NGVW   S PE S N
Sbjct: 724 VEWRDLKDLFPKMTLLEKYKCPKIAFCPTDGNGVW--RSQPETSPN 767

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453164|gb|AAM19823.1| AT5g45500/MFC19_17 [Arabidopsis thaliana] gi|23308327|gb|AAN18133.1| At5g45500/MFC19_17 [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/367 (41%), Positives = 219/367 (59%), Gaps = 31/367 (8%)

Query: 360 VSALVNVSEQFPDFQSKWFS--------------NLKKVKVLHLGRWKNSAKHFVEVQGS 405
           +  + NVSE+FPDF  KWFS                +K+KV +LGRW+ +AK  +EV+  
Sbjct: 7   IETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENP 66

Query: 406 KFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKL 465
           + +K LK M  L+LLS QG+  I  +  ++  L +L +LDLR CY L KLP  +DSLK L
Sbjct: 67  ELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKAL 126

Query: 466 TYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIY 525
            YLDI++CY+I+ MPK LS L  L+VLKGF+V+DA   + +CTL +L + LK+LRKLSI 
Sbjct: 127 IYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVH-LKKLRKLSIS 185

Query: 526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGA----GYSKCRNQEGNNEHNKKQE-----DE 576
           +N     I+ +  +++ FK L KLK+AWG        K  + E  +E+ K +E     + 
Sbjct: 186 INKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILER 245

Query: 577 AETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSG---LNLRKLYIRGGQLRSLQG 633
           A T  +   D T  +  + L+KLDL CFP E LP WL     LN+ KLYI+GG   +  G
Sbjct: 246 AATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFG 305

Query: 634 DTHKKYST---VKVLRLRYLNELNVNWREL-QALFPDLEYLEKFNCPMISFFPCDANGVW 689
            +    ++   V VLRL++L +L V WR+L +  FP+L++LEK+ CP +S  PCD  G+W
Sbjct: 306 KSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIW 365

Query: 690 IKESSPE 696
            K    E
Sbjct: 366 RKPEEDE 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414880124|tpg|DAA57255.1| TPA: hypothetical protein ZEAMMB73_808803 [Zea mays]

 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 251/474 (52%), Gaps = 47/474 (9%)

Query: 246 CFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGF 305
           CF+VFP N+++ KR + +W I E    A   R +  + V     EK     L  LE    
Sbjct: 176 CFSVFPENSIISKRAMIHWWIGEGLVAA--TRSQTAEDVGKACFEK-----LIALE---M 225

Query: 306 IVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLW-----------CKWARLEGLEKGS 354
           I PV +K R  VN + K+ P  R  +I   K    +           C       L +  
Sbjct: 226 IEPVYQKCRYGVN-QCKLHPWIRRMLIKVAKQARFFEFDSDGNATWDCSATHRACLVEEH 284

Query: 355 TQLLTVSAL------VNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL 408
            Q + V++L       N++EQ+  F+  WF +L+K+ VL LGRW N  +H +EV  ++FL
Sbjct: 285 QQEIDVASLRNLLTIFNINEQYLQFEKSWFLDLRKIAVLQLGRWHNLCRHHIEVDSTEFL 344

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYL 468
           + L++ + L+ L L+G+  I E+P+SI  LSNLR+LDL  C+ L +L   +  L+ LT+L
Sbjct: 345 EGLQSSNQLKYLCLRGISRIIELPASIGGLSNLRILDLHACHNLERLSTSITYLQMLTHL 404

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN 528
           D+SECYL+E MP+ +  L+ELQVLKGF++  +  N   C + +L   L +L+KL+IY+ +
Sbjct: 405 DVSECYLLEGMPRGIGLLTELQVLKGFVIGGSTGNYN-CRVAELAR-LDKLKKLTIYIGS 462

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588
                E     LE  K L  LKI W    S             K+E   +T     L  +
Sbjct: 463 KVAVTENELNELENIKGLCVLKITWAVSLS-------------KKERVHQTSDSTPLITS 509

Query: 589 FGQKDRLLEKLDLHCFPLESLPNWLSG---LNLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
                  LEKLDL CFP E +P+WLS    L L++LY  GG L++       +  +V+VL
Sbjct: 510 LSLPLN-LEKLDLCCFPGEKVPDWLSPSKLLRLKRLYFTGGMLKTFGNKNMLEVWSVEVL 568

Query: 646 RLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSK 699
           RL++LN+L+V W ++  +FP L +LE F C  +  FPCD +GVW+   + +  K
Sbjct: 569 RLKFLNDLSVQWTQVHEIFPKLTFLEVFRCRKLESFPCDKDGVWMNHDTKDSRK 622

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242058981|ref|XP_002458636.1| hypothetical protein SORBIDRAFT_03g037130 [Sorghum bicolor] gi|241930611|gb|EES03756.1| hypothetical protein SORBIDRAFT_03g037130 [Sorghum bicolor]

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 246/469 (52%), Gaps = 47/469 (10%)

Query: 246 CFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGF 305
           CF+VFP N++V KR + +W I E     E  R +  + V     EK     L  LE    
Sbjct: 176 CFSVFPENSIVSKRAMIHWWIGE--GLVEATRSQTAEDVGQACFEK-----LIALE---M 225

Query: 306 IVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLW-------CKW----ARLEGLEKGS 354
           I PV +K R  V N+ K+ P  R  +I   K    +         W         L +  
Sbjct: 226 IEPVYQKCRYGV-NQCKLHPWIRRMLIKVAKQARFFEFDSDGNATWDSSATHRACLIEEH 284

Query: 355 TQLLTVSAL------VNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL 408
            Q + V++L       NV+EQ+  F+  WFS+L+K+ VL LGRW N  +H +EV  ++FL
Sbjct: 285 QQKIDVASLRNLLTIFNVNEQYLQFEKGWFSDLRKIAVLQLGRWHNLRRHHIEVDSTEFL 344

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYL 468
           + L+  + L+ L L+G+  I E+P+SI  LSNLR+LDL  C+ L  L   + SL+ LT+L
Sbjct: 345 EGLQLSNQLKYLCLRGISRIIELPASIGGLSNLRILDLHACHNLEILSASITSLQMLTHL 404

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN 528
           D+SECYL+E MP+ +  L+ELQVLKGF++  +  N   C + +L   L +L+KL+IY+ +
Sbjct: 405 DVSECYLLEGMPRGIGLLTELQVLKGFVIGGSTGNYN-CRVAELAR-LDKLKKLTIYIGS 462

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588
                E     LE  K L  LKI W    S       N E   +  D         L   
Sbjct: 463 KVTVTEDELNELENIKGLCVLKITWAVSLS-------NKERVHQTSDSTPLLTSLSLPLN 515

Query: 589 FGQKDRLLEKLDLHCFPLESLPNWLSG---LNLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
                  LEKLDL CFP E +P+W S    L L++LY  GG LR+       +  +V+VL
Sbjct: 516 -------LEKLDLCCFPGEKIPDWFSPSKLLRLKRLYFTGGMLRTFGNKNMSEVWSVEVL 568

Query: 646 RLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPCDANGVWIKESS 694
           RL++LN+L+V W ++  +FP L +LE F C  +  FPCD +GVW+   +
Sbjct: 569 RLKFLNDLSVQWTQVHDIFPKLTFLEVFRCRKLESFPCDKDGVWMNHDT 617

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125440|ref|XP_003564402.1| PREDICTED: disease resistance RPP13-like protein 4-like [Brachypodium distachyon]

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 172/501 (34%), Positives = 258/501 (51%), Gaps = 62/501 (12%)

Query: 225 MIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAV 284
           MI N +  + NL  + K CL CF++FP N+++ KR + +W I E    A      K++  
Sbjct: 155 MISNLQLSYYNLDIQLKLCLLCFSIFPENSIISKRAMIHWWIGEGLVEAT-----KSQTA 209

Query: 285 EDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPE------ 338
           ED  +     D  + L     I PVR KR   VN + K+ P  R  +I   + E      
Sbjct: 210 EDIGK-----DCFERLITVEMIEPVRHKRIGSVN-QCKLHPWIRRMLITVARQERFVEFD 263

Query: 339 -DLWCKWA------------RLEGLEKGSTQ-------LLTVSALVNVSEQFPDFQSKWF 378
            D    W              ++  E G  +       LLT+    NV+EQ+  F   WF
Sbjct: 264 SDGNATWGFSGTHRACLVGEHIQVTETGPLRNQSNPDYLLTI---FNVNEQYLQFDKNWF 320

Query: 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438
            +L+K++VL LGRW +  +H +EV  +++L+ L++   L+ L L+G+  + E+P+S+  L
Sbjct: 321 MDLRKIEVLQLGRWHSLYRHHIEVDSTEYLEGLQSSKQLKYLCLRGISRVTELPASVGAL 380

Query: 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT 498
           +NLR+LDL  C+ L +L + + SL+ LT+LD+SECYL+E MP+ +  L+ELQVLKGF++ 
Sbjct: 381 TNLRILDLHACHNLERLTESITSLQLLTHLDVSECYLLEGMPRGIGLLAELQVLKGFVIG 440

Query: 499 DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS 558
            +  N   C + +L   L +L+KLSIY+ +  +  E     +E  K L  L I W    S
Sbjct: 441 GSIGNSN-CRVAELVR-LDKLKKLSIYIGSKVLVTEDELNEVENIKALRVLTITWAVLLS 498

Query: 559 KCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW---LSG 615
           K             Q+D A T     L          LEKLDL CFP   +P W      
Sbjct: 499 K---------KGAGQQDSAATTLLTSLS-----LPPHLEKLDLRCFPGVDMPVWLILGRR 544

Query: 616 LNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC 675
           L LR+LY  GG L +    T      V++LRL++LN+L + W +++ +FP L +LE F C
Sbjct: 545 LRLRRLYFTGGMLHTFGEST---LWNVEILRLKFLNDLVLEWTQVREMFPKLTFLEVFQC 601

Query: 676 PMISFFPCDANGVWIKESSPE 696
             I  FPCD +GVW+   + E
Sbjct: 602 SRIKSFPCDKDGVWMSCDTQE 622

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571831|ref|XP_002526858.1| protein binding protein, putative [Ricinus communis] gi|223533757|gb|EEF35489.1| protein binding protein, putative [Ricinus communis]

 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 221/374 (59%), Gaps = 26/374 (6%)

Query: 340 LWCKWARLEGLEKGSTQLLTVS-------ALVNVSEQFPDFQSKWFSNLKKVKVLHLGRW 392
           L+C  A L   E+G+++ + +S        L+N+S++FPD + KWF  ++ +KVL LGRW
Sbjct: 32  LFCGRAVLVENEEGNSRDMVMSLNPEKLITLINISDRFPDLEVKWFLKMRNIKVLCLGRW 91

Query: 393 KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYL 452
           + +    +EV+ +KFL  LKNM  L  LSLQGV  +  +P ++  L NLR LDL+ C+ L
Sbjct: 92  EENTTSHIEVEDTKFLNGLKNMKHLEFLSLQGVSRVCRLPDNVTKLINLRTLDLKACHNL 151

Query: 453 TKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDL 512
             LP  + SL+ L +LDISECYL++ MPK +  LS+L+VLKGF+VTD K      ++ DL
Sbjct: 152 EALPDSIGSLRNLAHLDISECYLLDRMPKGIELLSQLEVLKGFVVTDKKMRGA-GSISDL 210

Query: 513 GNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG-----------AGYSKCR 561
            + L +LRKLSI       P  +  ++L+   +L KL I W            +G  +  
Sbjct: 211 -SRLLQLRKLSINATKRDFPTAEELDALQGCISLQKLTIVWAGTSDAKPVVRSSGLKRLN 269

Query: 562 NQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL--SGL-NL 618
                   N +    +   G+  +     +    L+KLDL CFP    P+WL  S L +L
Sbjct: 270 RSFAFARKNNRLNRASTVIGRESMASGGPKLPVHLKKLDLQCFPETEAPSWLMPSKLESL 329

Query: 619 RKLYIRGGQLRSL--QGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP 676
            KLYIRGG+L+ L   GD   K++ V +LRL++  EL+++WRE+Q+ FP+L YLEK +CP
Sbjct: 330 EKLYIRGGKLQFLNEAGDEGPKWN-VMILRLKFSTELSMHWREVQSTFPELIYLEKVDCP 388

Query: 677 MISFFPCDANGVWI 690
            ++FFPCD NG+W+
Sbjct: 389 NLTFFPCDENGIWL 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
TAIR|locus:2163578	771	AT5G45500 "AT5G45500" [Arabido	0.474	0.433	0.428	1.6e-75
TAIR|locus:2163593	1167	AT5G45520 "AT5G45520" [Arabido	0.562	0.339	0.318	1.8e-71
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.230	0.190	0.325	9.6e-11
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.262	0.175	0.302	9.8e-09
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.169	0.129	0.382	1.1e-08
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.384	0.301	0.264	1.6e-08
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.380	0.220	0.268	8.4e-08
TAIR|locus:2177401	833	AT5G38350 [Arabidopsis thalian	0.208	0.176	0.302	7.9e-07
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.389	0.224	0.257	1.1e-06
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.223	0.131	0.291	1.5e-06

TAIR|locus:2163578 AT5G45500 "AT5G45500" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 158/369 (42%), Positives = 220/369 (59%)

Query:   360 VSALVNVSEQFPDFQSKWFSNLK--------------KVKVLHLGRWKNSAKHFVEVQGS 405
             +  + NVSE+FPDF  KWFS  K              K+KV +LGRW+ +AK  +EV+  
Sbjct:   405 IETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENP 464

Query:   406 KFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKL 465
             + +K LK M  L+LLS QG+  I  +  ++  L +L +LDLR CY L KLP  +DSLK L
Sbjct:   465 ELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKAL 524

Query:   466 TYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIY 525
              YLDI++CY+I+ MPK LS L  L+VLKGF+V+DA   + +CTL +L + LK+LRKLSI 
Sbjct:   525 IYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVH-LKKLRKLSIS 583

Query:   526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGA----GYSKCRNQEGNNEHNKKQE-----DE 576
             +N     I+ +  +++ FK L KLK+AWG        K  + E  +E+ K +E     + 
Sbjct:   584 INKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILER 643

Query:   577 AETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSG---LNLRKLYIRGG-QL---- 628
             A T  +   D T  +  + L+KLDL CFP E LP WL     LN+ KLYI+GG +L    
Sbjct:   644 AATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFG 703

Query:   629 RSLQGDTHKKYSTVKVLRLRYLNELNVNWREL-QALFPDLEYLEKFNCPMISFFPCDANG 687
             +SL     K    V VLRL++L +L V WR+L +  FP+L++LEK+ CP +S  PCD  G
Sbjct:   704 KSLPSQNSK--CKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIG 761

Query:   688 VWIKESSPE 696
             +W K    E
Sbjct:   762 IWRKPEEDE 770

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2163593 AT5G45520 "AT5G45520" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
 Identities = 138/433 (31%), Positives = 227/433 (52%)

Query:   183 KVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKN-ESK 241
             K+ + +  ++ E+D + ++ I ++    ++F EKF      E ++    KF+ L +   K
Sbjct:   177 KISITDSQTAEENDEISETGI-DIYLPGLHFSEKFKTSSAFEEVVE---KFQGLDDFTQK 232

Query:   242 FCLWCFTVFPNNAVVRKRLVENWLITEDXXXXXXXXXXXXXXVEDDTQEKNIDDILKELE 301
              CL  F VFP N  V++ ++  W I E               ++  + +K    +L+ +E
Sbjct:   233 LCLLSFAVFPENREVKRTMLMYWWIGEGFISCDDSENLVTRILDSFSDKK----LLEPVE 288

Query:   302 REGFIVPVXXXXXXDVNNRF-----KMDPL------ARLAVINSRKPEDLWCKWARLEGL 350
              E  ++P        V++       +MD         +L +  S K +    K + L  L
Sbjct:   289 DERKLLPSSYKMEPHVHSAVIYLAKEMDLFELYNKNGKLIMKKSSKKKVCLVKGSSL--L 346

Query:   351 EKGSTQLL---TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKF 407
                 T ++   T+  + N SE++PDF  KWF  +  ++VL+LGRW+ +AK  +EV+ ++F
Sbjct:   347 RDAKTSVMEPKTLQTVFNSSERYPDFTFKWFPLMDSLRVLYLGRWEQTAKRHIEVESTEF 406

Query:   408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
             LK +K++  LRL S QG+  I  + +SI  L  L +LDL+ CY L  LP  +   +KL Y
Sbjct:   407 LKNMKSLKNLRLASFQGISRIERLENSICALPELVILDLKACYNLEVLPSDIGLFEKLIY 466

Query:   468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
             LD+SECY+++ MPK ++ LS LQVLKGF+++++  ++  C ++ L N    LRKLSI VN
Sbjct:   467 LDVSECYMLDRMPKGIAKLSRLQVLKGFVISESD-HENNCAVKHLVN----LRKLSITVN 521

Query:   528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
               +  +E L ESL   + L  LKIAWGA    C  +E N     ++    + + +GGL  
Sbjct:   522 KYSFKVESLMESLTGLQGLESLKIAWGA----C--EEPNEAVESRETTNEKKENQGGLAT 575

Query:   588 TFGQKDRLLEKLD 600
                 KD L+E+ D
Sbjct:   576 DKKLKD-LMERED 587

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
 Identities = 57/175 (32%), Positives = 92/175 (52%)

Query:   375 SKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS 434
             +K F++ K ++VL +      +K   +   S+ L E+ ++  L  LSL   + + + P S
Sbjct:   552 AKKFTDCKYLRVLDI------SKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRS 605

Query:   435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494
             + +L NL++LD   C  L +L   +   KKL  LD++ C  +E  PK + SL +L+VL G
Sbjct:   606 MEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLG 665

Query:   495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
             F    A+ N+  C L ++ N L  LRKL + +      IE+  E L+   NL KL
Sbjct:   666 F--KPARSNNG-CKLSEVKN-LTNLRKLGLSLTRGD-QIEE--EELDSLINLSKL 713

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
 Identities = 62/205 (30%), Positives = 94/205 (45%)

Query:   412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDIS 471
             KN+S  R L L     + ++P S+  + NL+ L L  C  L +LP  + +L  L YLD+ 
Sbjct:   599 KNISHARFLDLSRTE-LEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLI 657

Query:   472 ECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELR-KLSIYVNNNA 530
                L + MP+    L  LQ L  F V+ A    +I    +LG  L +L  KL I      
Sbjct:   658 GTKLRQ-MPRRFGRLKSLQTLTTFFVS-ASDGSRI---SELGG-LHDLHGKLKIVELQRV 711

Query:   531 IPIEKLSES-LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF 589
             + +   +E+ L   K+L ++   W  G S   N    N H  + ++EAE   K  L    
Sbjct:   712 VDVADAAEANLNSKKHLREIDFVWRTGSSSSENN--TNPH--RTQNEAEVFEK--L---- 761

Query:   590 GQKDRLLEKLDLHCFPLESLPNWLS 614
              +  R +EKL +  +     P+WLS
Sbjct:   762 -RPHRHIEKLAIERYKGRRFPDWLS 785

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 52/136 (38%), Positives = 79/136 (58%)

Query:   369 QFPDFQSKWFSNLKKVKVL--HLGRWKNSAKHFVE-----VQGSKFLKELKN--MSA--- 416
             +FP  Q K+ S++++V ++   L R  N+    VE     +QG+  +KE+ N  + A   
Sbjct:   462 EFP--QDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPN 519

Query:   417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI 476
             LR+L L GV  IR +P S +NL +LR L LR C  L  LP  L+SL KL +LD+ E  + 
Sbjct:   520 LRILDLSGVR-IRTLPDSFSNLHSLRSLVLRNCKKLRNLPS-LESLVKLQFLDLHESAIR 577

Query:   477 EYMPKELSSLSELQVL 492
             E +P+ L +LS L+ +
Sbjct:   578 E-LPRGLEALSSLRYI 592

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 78/295 (26%), Positives = 134/295 (45%)

Query:   406 KFLKELKN-MSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKK 464
             K   E  N M  L +L L G Y + E+P+ I+ L +L+ L+L     +  LPKGL  LKK
Sbjct:   551 KISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTG-IRHLPKGLQELKK 609

Query:   465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSI 524
             L +L +     +  M   +S L  L+VLK  L   +   D + T+++L  +L+ L  L+ 
Sbjct:   610 LIHLYLERTSQLGSMVG-ISCLHNLKVLK--LSGSSYAWD-LDTVKEL-EALEHLEVLTT 664

Query:   525 YVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNN---EHNKKQEDEAETQG 581
              +++  +  ++   S      +  LKI+  +  ++ RN    +     ++ QE   E   
Sbjct:   665 TIDDCTLGTDQFLSSHRLMSCIRFLKISNNS--NRNRNSSRISLPVTMDRLQEFTIEHCH 722

Query:   582 KGGLD-GTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYI-RGGQLRSLQGDTHKKY 639
                +  G       L+E    +C  L  L   +   NL++L++    QL  +  +  K +
Sbjct:   723 TSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDII-NKEKAH 781

Query:   640 STVK--VLRLRYLNELNV-NWRELQAL------FPDLEYLEKFNCPMISFFPCDA 685
                K  ++    LNEL++ N REL+ +      FP LE +    CP +   P D+
Sbjct:   782 DGEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDS 836

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 81/302 (26%), Positives = 136/302 (45%)

Query:   368 EQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYG 427
             ++ PD  S   +NL+   VL+L    N     VE+  S     + N + L  L L G   
Sbjct:   688 KELPDLSSA--TNLE---VLNL----NGCSSLVELPFS-----IGNATKLLKLELSGCSS 733

Query:   428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487
             + E+PSSI N  NL+ +D   C  L +LP  + +   L  LD+S C  ++ +P  + + +
Sbjct:   734 LLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCT 793

Query:   488 ELQVLKGFLVTDAK--PND-KICT-LEDLG-NSLKELRKLSIYVNNNAIPIEKL----SE 538
              L+ L     +  K  P+    CT L++L       L KL   + N AI +EKL     E
Sbjct:   794 NLKKLHLICCSSLKELPSSIGNCTNLKELHLTCCSSLIKLPSSIGN-AINLEKLILAGCE 852

Query:   539 SLEKFKNLL----KLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD- 593
             SL +  + +     LKI    GY  C  +  +   N  +  E   +G   L       + 
Sbjct:   853 SLVELPSFIGKATNLKIL-NLGYLSCLVELPSFIGNLHKLSELRLRGCKKLQVLPTNINL 911

Query:   594 RLLEKLDL-HCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE 652
               L +LDL  C  L++ P  +   N+++L++RG Q+  +     + +  ++ L++ Y   
Sbjct:   912 EFLNELDLTDCILLKTFP--VISTNIKRLHLRGTQIEEVPSSL-RSWPRLEDLQMLYSEN 968

Query:   653 LN 654
             L+
Sbjct:   969 LS 970

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2177401 AT5G38350 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 49/162 (30%), Positives = 86/162 (53%)

Query:   400 VEVQGSKFLKELKNMSA---LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP 456
             +++  SK LKEL ++S    L  L + G   + E+PSSI  L  L +L LR C  L  LP
Sbjct:   483 MDLSESKHLKELPDLSTATNLEYLIMSGCISLVELPSSIGKLRKLLMLSLRGCSKLEALP 542

Query:   457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV---TDAKPNDKICTLE-DL 512
               ++ L+ L YLD+++C LI+  P+  +++ +L++ K  +    +  K    +  LE   
Sbjct:   543 TNIN-LESLDYLDLTDCLLIKKFPEISTNIKDLKLTKTAIKEVPSTIKSWSHLRKLEMSY 601

Query:   513 GNSLKEL-RKLSI----YVNNNAIPIEKLSESLEKFKNLLKL 549
               +LKEL   L I    Y+N+  +  +++ + ++K  +L  L
Sbjct:   602 SENLKELPHALDIITTLYINDTEM--QEIPQWVKKISHLQTL 641

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 77/299 (25%), Positives = 136/299 (45%)

Query:   338 EDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAK 397
             +DL C   ++  L+  S Q + + +  N     P+F  +   +  K++ L  G  +    
Sbjct:   664 QDLICHSPKIRSLKWYSYQNICLPSTFN-----PEFLVELHMSFSKLRKLWEGTKQLRNL 718

Query:   398 HFVEVQGSKFLKELKNMSA---LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK 454
              ++++  S+ LKEL N+S    L  L L+    + E+PSSI  L++L+ L L+ C  L +
Sbjct:   719 KWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVE 778

Query:   455 LPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGN 514
             LP    +  KL  L +  C  +E +P  +++ + LQ L   L+  ++    +  L  + N
Sbjct:   779 LPS-FGNATKLEELYLENCSSLEKLPPSINA-NNLQQLS--LINCSR----VVELPAIEN 830

Query:   515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE 574
             +   L+KL +    N   + +L  S+    NL +L I+  +   K  +  G+   N K+ 
Sbjct:   831 ATN-LQKLDL---GNCSSLIELPLSIGTATNLKELNISGCSSLVKLPSSIGDIT-NLKEF 885

Query:   575 DEAETQGKGGLDGTFGQKDRLLEKLDLH-CFPLESLPNWLSGLNLRKLYIRGGQLRSLQ 632
             D +       L      K   L+ L+L  C  L+S P  +S       Y R  +LR L+
Sbjct:   886 DLSNCSNLVELPININLK--FLDTLNLAGCSQLKSFPE-ISTKIFTDCYQRMSRLRDLR 941

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 51/175 (29%), Positives = 87/175 (49%)

Query:   379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSA---LRLLSLQGVYGIREIPSSI 435
             SNL+K   L  G  +     ++++  S +LKEL N+S    L  L L+    + E+PSSI
Sbjct:   701 SNLRK---LWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSSI 757

Query:   436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
               L++L++LDL  C  L KLP  +++  KL  L +  C  +  +P  + + + L+ L   
Sbjct:   758 EKLTSLQILDLENCSSLEKLP-AIENATKLRELKLQNCSSLIELPLSIGTATNLKQL--- 813

Query:   496 LVTDAKPNDKICT-LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
                    N   C+ L  L +S+ ++  L ++  +N   +  L  S+   +NL KL
Sbjct:   814 -------NISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKL 861

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	704
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 440 NLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
           NL+ LDL     LT +P G    L  L  LD+S   L    P+  S L  L+ L
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 13/108 (12%)

Query: 400 VEVQGSKFLK---ELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKL 455
           +++QGSK  K    + +++ LR + L+G   ++EIP  S+A  +NL  L L  C  L +L
Sbjct: 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA--TNLETLKLSDCSSLVEL 673

Query: 456 PKGLDSLKKLTYLDISECYLIEYMPK--ELSSLSELQV-----LKGFL 496
           P  +  L KL  LD+S C  +E +P    L SL  L +     LK F 
Sbjct: 674 PSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 409 KELKNMSALRLLSLQGVYG--IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLT 466
            E+  +++L  L L  VY      IPSS+ NL NL+ L L        +P  + SL+KL 
Sbjct: 230 YEIGGLTSLNHLDL--VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 467 YLDISECYLIEYMPKELSSLSELQVLKGF 495
            LD+S+  L   +P+ +  L  L++L  F
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 406 KFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKL 465
           +   ++ + S+L++L L G   + +IP+S+ NL++L  L L     + ++P+ L  +K L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 466 TYLDISECYLIEYMPKE---LSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL 522
            ++ +    L   +P E   L+SL+ L ++   L      +        LGN LK L+ L
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------LGN-LKNLQYL 265

Query: 523 SIYVNNNAIPIEKLSESLEKFKNL 546
            +Y N  + PI     SL+K  +L
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISL 289

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	704
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.58
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.63
PLN03150	623	hypothetical protein; Provisional	98.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.49
PLN03150	623	hypothetical protein; Provisional	98.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.1
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.01
PRK15386	426	type III secretion protein GogB; Provisional	97.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.99
KOG4341	483	consensus F-box protein containing LRR [General fu	96.82
KOG4341	483	consensus F-box protein containing LRR [General fu	96.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.8

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-49  Score=458.19  Aligned_cols=417  Identities=21%  Similarity=0.242  Sum_probs=252.8

Q ss_pred             hhhhhhhhhhhhccccCcchhhhhHHHHHHHH----HHhhcChHHHhH-hhchhhhh------hchHHHHHHHhcCCCCC
Q 041391           97 KSKSKREVNAATNSKSNNDLKQKDNLVKKYLD----KIKKDSTENREK-LGELIKDH------IRRFEGILEKLSSGSIQ  165 (704)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~~------~~~l~LF~~~af~~~~~  165 (704)
                      =+++||.|+..+-=-...+++.|..-.-....    -++.++...+.. ++.....+      -++|+||+++||.....
T Consensus       257 ~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~  336 (889)
T KOG4658|consen  257 LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG  336 (889)
T ss_pred             HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence            35678888776644444444444332211100    023334444443 34333333      47899999999988655


Q ss_pred             chhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH----------------HHHHH
Q 041391          166 SEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME----------------MIINF  229 (704)
Q Consensus       166 ~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~----------------i~~~L  229 (704)
                      .++.++++|++||++|+|||||               +.++|+.|+.|++.++|+.+.+                |+++|
T Consensus       337 ~~~~i~~lak~v~~kC~GLPLA---------------l~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL  401 (889)
T KOG4658|consen  337 SHPDIEELAKEVAEKCGGLPLA---------------LNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL  401 (889)
T ss_pred             ccccHHHHHHHHHHHhCChHHH---------------HHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence            5566999999999999999999               9999999999999999997654                78999


Q ss_pred             HHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCccce
Q 041391          230 RNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPV  309 (704)
Q Consensus       230 ~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~~~  309 (704)
                      ++|||+||+++|.||||||+|||||.|++++||.+||||||+..         ...+.++++.|+.|+.+|+.++|++..
T Consensus       402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~---------~~~~~~~~d~G~~~i~~LV~~~Ll~~~  472 (889)
T KOG4658|consen  402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP---------LDGGETAEDVGYDYIEELVRASLLIEE  472 (889)
T ss_pred             hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc---------cccccchhcchHHHHHHHHHHHHHhhc
Confidence            99999999889999999999999999999999999999999954         346789999999999999999999987


Q ss_pred             eecccCCCcCeEEeCHHHHHHHHHhcC-----CCcccccccc--ccccccCccccceeeeeecccCCCCCcchhhcCCCC
Q 041391          310 RKKRRKDVNNRFKMDPLARLAVINSRK-----PEDLWCKWAR--LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLK  382 (704)
Q Consensus       310 ~~~~~~~~~~~~~mHDll~dla~~i~~-----~e~~~~~~~~--~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~f~~l~  382 (704)
                      ...   +...+|+|||+||+||.++++     +++ .....+  .+. .........+|.+....+.+.....  =..++
T Consensus       473 ~~~---~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~--~~~~~  545 (889)
T KOG4658|consen  473 RDE---GRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAG--SSENP  545 (889)
T ss_pred             ccc---cceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccc-cccccchhheeEEEEeccchhhccC--CCCCC
Confidence            643   245789999999999999999     444 222211  111 0111111122322222222111100  02223


Q ss_pred             CccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      .|++|-+.+|..    +    ...++ ..|..++.|++|||++|.....+|.+|++|-+||+|+++++ .+..+|.++++
T Consensus       546 ~L~tLll~~n~~----~----l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~  616 (889)
T KOG4658|consen  546 KLRTLLLQRNSD----W----LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGN  616 (889)
T ss_pred             ccceEEEeecch----h----hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHH
Confidence            455555544421    0    00111 22444555555555555555555555555555555555542 44455555555


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC---C--------
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN---A--------  530 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~---~--------  530 (704)
                      |..|.+|++..+.....+|..+..|++|++|..+...   .+.-...+.++. .|.+|+.|.+.....   .        
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l~el~-~Le~L~~ls~~~~s~~~~e~l~~~~~L  692 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLLKELE-NLEHLENLSITISSVLLLEDLLGMTRL  692 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhHHhhh-cccchhhheeecchhHhHhhhhhhHHH
Confidence            5555555555544443443333345555555432221   000011223333 444444443332221   0        


Q ss_pred             -----------CchhhHHHHhccCCCccEEEEEecCCC
Q 041391          531 -----------IPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       531 -----------~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                                 ......+.++..+.+|+.|.+.+|.+.
T Consensus       693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence                       011223356777889999999988864

>PLN03210 Resistant to P

Probab=100.00  E-value=2.3e-44  Score=440.82  Aligned_cols=516  Identities=17%  Similarity=0.172  Sum_probs=313.9

Q ss_pred             HHHHHhhhhhhhhhhhhccccCcchhhhhHHHHHHHHHHhhcC--------hHHHhHhhchhhhh------hchHHHHHH
Q 041391           92 EEKEEKSKSKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDS--------TENREKLGELIKDH------IRRFEGILE  157 (704)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~------~~~l~LF~~  157 (704)
                      ...++..++||.++.-+.   .++..|++++.+ ...|+..|+        .......+...+|+      -++|+||++
T Consensus       287 ~~~~~~L~~krvLLVLDd---v~~~~~l~~L~~-~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~  362 (1153)
T PLN03210        287 GAMEERLKHRKVLIFIDD---LDDQDVLDALAG-QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR  362 (1153)
T ss_pred             HHHHHHHhCCeEEEEEeC---CCCHHHHHHHHh-hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence            345667888888777554   567789999886 456776664        12222233334444      368999999


Q ss_pred             HhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH---------HHHH
Q 041391          158 KLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME---------MIIN  228 (704)
Q Consensus       158 ~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~---------i~~~  228 (704)
                      +||++. .++.++++++++||++|+|+|||               ++++|+.|+++ +..+|+.+++         |..+
T Consensus       363 ~Af~~~-~~~~~~~~l~~~iv~~c~GLPLA---------------l~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~  425 (1153)
T PLN03210        363 SAFKKN-SPPDGFMELASEVALRAGNLPLG---------------LNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKT  425 (1153)
T ss_pred             HhcCCC-CCcHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHH
Confidence            999886 56778999999999999999999               78888888765 5678887653         8889


Q ss_pred             HHHhhhhchhh-hHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCcc
Q 041391          229 FRNKFRNLKNE-SKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIV  307 (704)
Q Consensus       229 L~lSYd~L~~~-lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~  307 (704)
                      |++|||+|+++ .|.||+||||||.++.+   +.|..|+|.+.+..                    +..++.|+++|||+
T Consensus       426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~--------------------~~~l~~L~~ksLi~  482 (1153)
T PLN03210        426 LRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV--------------------NIGLKNLVDKSLIH  482 (1153)
T ss_pred             HHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc--------------------hhChHHHHhcCCEE
Confidence            99999999875 99999999999998654   35778888877632                    22388999999998


Q ss_pred             ceeecccCCCcCeEEeCHHHHHHHHHhcCCCcccccccc--------ccccccCccccceeeeeecccCCCC--Ccchhh
Q 041391          308 PVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWAR--------LEGLEKGSTQLLTVSALVNVSEQFP--DFQSKW  377 (704)
Q Consensus       308 ~~~~~~~~~~~~~~~mHDll~dla~~i~~~e~~~~~~~~--------~~~~~~~~~~~~~lr~l~~~~~~~~--~~~~~~  377 (704)
                      +..        ++++|||++|+||+++++++... ...+        ++.+.....+...++++......+.  .+...+
T Consensus       483 ~~~--------~~~~MHdLl~~~~r~i~~~~~~~-~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a  553 (1153)
T PLN03210        483 VRE--------DIVEMHSLLQEMGKEIVRAQSNE-PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA  553 (1153)
T ss_pred             EcC--------CeEEhhhHHHHHHHHHHHhhcCC-CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence            753        46999999999999999876421 1111        2222222333345555554433332  233445


Q ss_pred             cCCCCCccEEEcCCCC---------------------Ccccchhhhccc----------------------hhhHhccCC
Q 041391          378 FSNLKKVKVLHLGRWK---------------------NSAKHFVEVQGS----------------------KFLKELKNM  414 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~---------------------l~~~~~~~~~~~----------------------~lp~~l~~L  414 (704)
                      |.+|++|+.|.+..+.                     ++.+++..++..                      .+|..+..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l  633 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL  633 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence            6666666666664331                     111111111122                      233445566


Q ss_pred             cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391          415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG  494 (704)
Q Consensus       415 ~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~  494 (704)
                      ++|++|+|++|..++.+|. ++.+++|++|+|++|..+..+|..+++|++|++|++++|..++.+|..+ ++++|+.|  
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L--  709 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL--  709 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE--
Confidence            6777777776666666665 6667777777777776677777777777777777777776666666655 56666666  


Q ss_pred             cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCC------------------------------
Q 041391          495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFK------------------------------  544 (704)
Q Consensus       495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~------------------------------  544 (704)
                          ++++|.....++.+   ..+|+.|++++|.+.. ++   ..+ .++                              
T Consensus       710 ----~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP---~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        710 ----NLSGCSRLKSFPDI---STNISWLDLDETAIEE-FP---SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             ----eCCCCCCccccccc---cCCcCeeecCCCcccc-cc---ccc-cccccccccccccchhhccccccccchhhhhcc
Confidence                34444333333322   2445555555544321 11   111 122                              


Q ss_pred             -CccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC-CCCCcccCCCCCeeEEE
Q 041391          545 -NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP-LESLPNWLSGLNLRKLY  622 (704)
Q Consensus       545 -~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~-l~~lP~~l~~l~L~~L~  622 (704)
                       +|+.|+|++|......|........+..+. +..+...+.+|... .+ ++|+.|+|++|. +..+|....  +|+.|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~-Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~~~--nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLE-IENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDIST--NISDLN  852 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEE-CCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccccc--ccCEeE
Confidence             333333333322221111111111111100 01111122333332 22 355555555442 333333211  677777


Q ss_pred             EEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          623 IRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       623 Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      |++|.+..+|..+ ..+++|+.|+|.+|+.|. ........+++|+.|++.+|++|+.++.
T Consensus       853 Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        853 LSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCCCCCccChHHH-hcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcccccccC
Confidence            7777777777654 358899999999988887 2222225678899999999999887765

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.2e-21  Score=239.49  Aligned_cols=294  Identities=22%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             eeeeeecccCCCC-CcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          359 TVSALVNVSEQFP-DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~-~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      .++.+....+.+. .+....|..+++|++|+|++|.+++         .+|.  +.+++|++|+|++|...+.+|..+++
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---------~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---------SIPR--GSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---------ccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence            3444444333333 2222334456666666666665432         1221  34666777777776555566777777


Q ss_pred             cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCC
Q 041391          438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSL  516 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L  516 (704)
                      +++|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..++++++|++|      ++++|.+.+.++ .+. .+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L------~L~~n~l~~~~p~~l~-~l  235 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI------YLGYNNLSGEIPYEIG-GL  235 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE------ECcCCccCCcCChhHh-cC
Confidence            7777777777776666777777777777777777777666777777777777777      466666665443 444 77


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.+.+.++   ..+.++++|+.|++++|.+....+........+..+ .+..+...+.+|..+..+ ++|
T Consensus       236 ~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~~~~l-~~L  310 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIP---SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL-DLSDNSLSGEIPELVIQL-QNL  310 (968)
T ss_pred             CCCCEEECcCceeccccC---hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE-ECcCCeeccCCChhHcCC-CCC
Confidence            777777777776654333   566777777777777776544333222211111111 112233334455555554 366


Q ss_pred             eEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391          597 EKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN  674 (704)
Q Consensus       597 ~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~  674 (704)
                      +.|++++|.+. .+|.++..+ +|+.|+|++|.+..........+++|+.|+|+++.........+ ..+++|+.|++.+
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~  389 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFS  389 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcC
Confidence            66666666553 455555555 66666666666642222223335666666666543221000011 2356677777766


Q ss_pred             CC
Q 041391          675 CP  676 (704)
Q Consensus       675 C~  676 (704)
                      |+
T Consensus       390 n~  391 (968)
T PLN00113        390 NS  391 (968)
T ss_pred             CE
Confidence            54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1e-21  Score=240.11  Aligned_cols=85  Identities=25%  Similarity=0.378  Sum_probs=35.6

Q ss_pred             hHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC
Q 041391          408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS  487 (704)
Q Consensus       408 p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~  487 (704)
                      |..++++++|++|+|++|...+.+|..++++.+|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..+++++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            33344444444444444433333444444444444444444433334444444444444444444443333444444444


Q ss_pred             Cccee
Q 041391          488 ELQVL  492 (704)
Q Consensus       488 ~L~~L  492 (704)
                      +|++|
T Consensus       261 ~L~~L  265 (968)
T PLN00113        261 NLQYL  265 (968)
T ss_pred             CCCEE
Confidence            44444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=5.6e-20  Score=195.56  Aligned_cols=301  Identities=17%  Similarity=0.173  Sum_probs=191.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      ..+++....+.+..+....|.++++|+.+.+.+|.++          .+|.......||+.|+|.+|.....-.+++.-+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l  148 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----------RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL  148 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh----------hcccccccccceeEEeeeccccccccHHHHHhH
Confidence            3445556667788888888999999999999999876          566666677789999999985433344668889


Q ss_pred             ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~  517 (704)
                      +.|+.|||+.| .+.++|.. +..-.++++|+|++|.++..--..|..+.+|-+|      .++.|.++..++..+.+|+
T Consensus       149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl------kLsrNrittLp~r~Fk~L~  221 (873)
T KOG4194|consen  149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL------KLSRNRITTLPQRSFKRLP  221 (873)
T ss_pred             hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheee------ecccCcccccCHHHhhhcc
Confidence            99999999997 56666543 5555789999999999776555668889999999      5999999988877774699


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccc-----
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK-----  592 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l-----  592 (704)
                      +|+.|++..|++... +  ...|.++++|+.|.|..|.+..-....+.....+..+... .|.....-..++..+     
T Consensus       222 ~L~~LdLnrN~iriv-e--~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~-~N~l~~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIV-E--GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE-TNRLQAVNEGWLFGLTSLEQ  297 (873)
T ss_pred             hhhhhhccccceeee-h--hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc-cchhhhhhcccccccchhhh
Confidence            999999999986422 1  1356777777777777776543332222222222222111 111111111223333     


Q ss_pred             ------------------ccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391          593 ------------------DRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE  652 (704)
Q Consensus       593 ------------------p~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~  652 (704)
                                        .+.|++|+|+.|.+.++++. +..+ .|++|.|++|.+..+....+.++.+|+.|+|+++. 
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-  376 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-  376 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-
Confidence                              13444444444444444432 1122 44444444444444444444455555555554422 


Q ss_pred             ccccccccc-----CcCCCccEEeeecCCCCCCCCCC
Q 041391          653 LNVNWRELQ-----ALFPDLEYLEKFNCPMISFFPCD  684 (704)
Q Consensus       653 L~l~~~~l~-----~~~p~L~~L~i~~C~~L~~lP~~  684 (704)
                        ++|..-.     ..+|+|+.|.+.++ +|+.+|-.
T Consensus       377 --ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr  410 (873)
T KOG4194|consen  377 --LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR  410 (873)
T ss_pred             --EEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence              1222111     34889999999886 77877753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=3.6e-20  Score=197.82  Aligned_cols=156  Identities=22%  Similarity=0.261  Sum_probs=70.7

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccC-CCcCC
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYY-LTKLP  456 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~-l~~lP  456 (704)
                      ...|+.++-|.|....+.          .+|..++.|.+|+.|.+++|. +..+-..++.|+.|+.++++.|+. ...+|
T Consensus        28 v~qMt~~~WLkLnrt~L~----------~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP   96 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLE----------QVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVIVRDNNLKNSGIP   96 (1255)
T ss_pred             HHHhhheeEEEechhhhh----------hChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHhhhccccccCCCC
Confidence            344555555555554332          445555555555555555542 333333344444444444444321 12344


Q ss_pred             ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      ..|.+|..|..|||++|+ +.++|.++..-+++-+|      ++++|++...+..++-+|+.|-.|++++|++.    .+
T Consensus        97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVL------NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe----~L  165 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVL------NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE----ML  165 (1255)
T ss_pred             chhcccccceeeecchhh-hhhcchhhhhhcCcEEE------EcccCccccCCchHHHhhHhHhhhccccchhh----hc
Confidence            444455555555555544 23444444444444444      34444444444333334444444444444432    22


Q ss_pred             HHHhccCCCccEEEEEecC
Q 041391          537 SESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~  555 (704)
                      |.-+..+.+|++|.|++|+
T Consensus       166 PPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCCh
Confidence            2333444444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=8e-20  Score=195.17  Aligned_cols=292  Identities=22%  Similarity=0.250  Sum_probs=212.6

Q ss_pred             eeeeeecccCCCCC-cchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391          359 TVSALVNVSEQFPD-FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA  436 (704)
Q Consensus       359 ~lr~l~~~~~~~~~-~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~  436 (704)
                      .+|++....+.+.. -.|.-+.++..|.+|||++|+++          +.|..+...+++-+|+|++| .+..+|.+ +-
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfi  147 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------EVPTNLEYAKNSIVLNLSYN-NIETIPNSLFI  147 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhh----------hcchhhhhhcCcEEEEcccC-ccccCCchHHH
Confidence            45555444443321 12334678999999999999875          77899999999999999997 68889866 56


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCc--cchhhHHh
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKI--CTLEDLGN  514 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~--~~~~~l~~  514 (704)
                      +|..|-+|||++| .+..+|+.+..|.+|++|.|++|.+...--..+-.|++|++|      .+++.+-+  ..++.+. 
T Consensus       148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL------hms~TqRTl~N~Ptsld-  219 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL------HMSNTQRTLDNIPTSLD-  219 (1255)
T ss_pred             hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh------hcccccchhhcCCCchh-
Confidence            8999999999986 789999999999999999999998543222234456677777      35554422  2345666 


Q ss_pred             CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC--CCcccccccchhhHhhHhhhcCCCCCCccccc
Q 041391          515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC--RNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK  592 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l  592 (704)
                      .|.||+.++++.|.+    +.+|+.+-++++|+.|+|++|.++.-.  ...|....   .+ . ........+|..+..+
T Consensus       220 ~l~NL~dvDlS~N~L----p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE---tL-N-lSrNQLt~LP~avcKL  290 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNL----PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE---TL-N-LSRNQLTVLPDAVCKL  290 (1255)
T ss_pred             hhhhhhhccccccCC----CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh---hh-c-cccchhccchHHHhhh
Confidence            888999999999865    556688889999999999999865311  11111111   00 0 1123356688888888


Q ss_pred             ccceeEEEEEcCCC--CCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccE
Q 041391          593 DRLLEKLDLHCFPL--ESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEY  669 (704)
Q Consensus       593 p~~L~~L~Ls~~~l--~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~  669 (704)
                      + .|+.|.+.+|.+  ..+|+.++.+ +|+.+..++|.+.-+|..... ++.|+.|.|..+.-+.+-  .-...+|-|+.
T Consensus       291 ~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR-C~kL~kL~L~~NrLiTLP--eaIHlL~~l~v  366 (1255)
T KOG0444|consen  291 T-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR-CVKLQKLKLDHNRLITLP--EAIHLLPDLKV  366 (1255)
T ss_pred             H-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh-hHHHHHhcccccceeech--hhhhhcCCcce
Confidence            5 899999998875  6899999999 999999999999877776554 688999988776544321  11146789999


Q ss_pred             EeeecCCCCCCCC
Q 041391          670 LEKFNCPMISFFP  682 (704)
Q Consensus       670 L~i~~C~~L~~lP  682 (704)
                      |+++.+|+|-.-|
T Consensus       367 LDlreNpnLVMPP  379 (1255)
T KOG0444|consen  367 LDLRENPNLVMPP  379 (1255)
T ss_pred             eeccCCcCccCCC
Confidence            9999999987544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=2.8e-19  Score=190.34  Aligned_cols=302  Identities=20%  Similarity=0.133  Sum_probs=175.3

Q ss_pred             cceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhh
Q 041391          357 LLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA  436 (704)
Q Consensus       357 ~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~  436 (704)
                      ..++..++..++.++.+....++.++.||+|||+.|.++.+..         .+|..-.++++|+|++|...+.--..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~---------~sfp~~~ni~~L~La~N~It~l~~~~F~  194 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK---------PSFPAKVNIKKLNLASNRITTLETGHFD  194 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC---------CCCCCCCCceEEeecccccccccccccc
Confidence            3356667777777777777777788888888888887664321         2344446777888887743332334577


Q ss_pred             ccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-----
Q 041391          437 NLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-----  510 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-----  510 (704)
                      +|.+|-+|.|+.| .+..+|. .|.+|++|+.|+|..|.+-..---.|..|.+|+.|.      +..|.+...-.     
T Consensus       195 ~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk------lqrN~I~kL~DG~Fy~  267 (873)
T KOG4194|consen  195 SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK------LQRNDISKLDDGAFYG  267 (873)
T ss_pred             ccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh------hhhcCcccccCcceee
Confidence            7777777777776 4445554 355577777777777764211122355666666662      44444333222     


Q ss_pred             --------------------hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccc
Q 041391          511 --------------------DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHN  570 (704)
Q Consensus       511 --------------------~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  570 (704)
                                          .++ +|+.|+.|+++.|.+...-.   ++....++|+.|+|+.|.+..-.+........+
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~---d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHI---DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeec---chhhhcccceeEeccccccccCChhHHHHHHHh
Confidence                                333 55555555555554432211   234445556666666665443222111111111


Q ss_pred             hhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCCC----CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCE
Q 041391          571 KKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPLE----SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKV  644 (704)
Q Consensus       571 ~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l~----~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~  644 (704)
                      ..+. ++.|. ...+. ..|..+ ++|++|+|+.|.+.    .-...+..+ .|+.|.+.+|+++.+|...+.+|+.|+.
T Consensus       344 e~Ln-Ls~Ns-i~~l~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  344 EELN-LSHNS-IDHLAEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             hhhc-ccccc-hHHHHhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            1111 00010 01111 122233 57888888877652    212234445 9999999999999999999999999999


Q ss_pred             EecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          645 LRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       645 L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      |+|.++..-.+..+.+. .+ .|++|.+..-.-|.++..
T Consensus       421 LdL~~NaiaSIq~nAFe-~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFE-PM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             ecCCCCcceeecccccc-cc-hhhhhhhcccceEEeccH
Confidence            99998877766666664 33 788888776555544444

>PLN03210 Resistant to P

Probab=99.68  E-value=3.8e-16  Score=192.46  Aligned_cols=289  Identities=19%  Similarity=0.271  Sum_probs=195.8

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+++|+.|+|+++...         ..+| .++.+++|++|+|++|..+..+|.++++|.+|+.|++++|..++.+|.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l---------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNL---------KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccCCCCCEEECCCCCCc---------CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            455667777777665321         2344 478899999999999988999999999999999999999999999998


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh---------------------------
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE---------------------------  510 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~---------------------------  510 (704)
                      .+ ++++|++|++++|..+..+|..   .++|++|.      +++|.+...+.                           
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~------L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD------LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCccccccc---cCCcCeee------cCCCccccccccccccccccccccccchhhcccccccc
Confidence            76 7899999999999877666653   23455552      33333222111                           


Q ss_pred             --hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc
Q 041391          511 --DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT  588 (704)
Q Consensus       511 --~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  588 (704)
                        ......++|+.|++++|.....   +|.+++++++|+.|+|++|......|... ....+..+ .+..+.....+|  
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~---lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L-~Ls~c~~L~~~p--  842 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVE---LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL-DLSGCSRLRTFP--  842 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccc---cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE-ECCCCCcccccc--
Confidence              1111235788899988875443   44778999999999999887544444322 11111111 111122222333  


Q ss_pred             ccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCC-CCCcCCCccCCCCCcCEEecCCCcccc-cccccc-----
Q 041391          589 FGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQ-LRSLQGDTHKKYSTVKVLRLRYLNELN-VNWREL-----  660 (704)
Q Consensus       589 ~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f~~L~~L~L~~l~~L~-l~~~~l-----  660 (704)
                        ..+.+|+.|+|++|.+..+|.++..+ +|+.|+|++|+ +..+|... ..+++|+.|.+.+|..|. +.+...     
T Consensus       843 --~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~  919 (1153)
T PLN03210        843 --DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDCGALTEASWNGSPSEVA  919 (1153)
T ss_pred             --ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCCcccccccCCCCchhhh
Confidence              33468999999999999999999888 99999999964 56676654 357899999999999886 222211     


Q ss_pred             ------cCcCCCccEEeeecCCCCC--------------CCCCCCCCcccccCCCC
Q 041391          661 ------QALFPDLEYLEKFNCPMIS--------------FFPCDANGVWIKESSPE  696 (704)
Q Consensus       661 ------~~~~p~L~~L~i~~C~~L~--------------~lP~~~~~~W~~~~~~~  696 (704)
                            ...+|....+.+.+|.+|.              .+|......|+..+..+
T Consensus       920 ~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g  975 (1153)
T PLN03210        920 MATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTG  975 (1153)
T ss_pred             hhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCccc
Confidence                  1235555667788888775              23444445676555444

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.63  E-value=1.2e-16  Score=167.83  Aligned_cols=187  Identities=16%  Similarity=0.221  Sum_probs=120.9

Q ss_pred             hhHHHhhhcCcc---cccCCCCCCchHHHHHhhhhhhhhhhhhccccCcchhhhhHHHHHHHHHHhhcC----hHHHhH-
Q 041391           69 LLGKLYRRLPSE---ITTGKKKSSSKEEKEEKSKSKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDS----TENREK-  140 (704)
Q Consensus        69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~-  140 (704)
                      ++..+.+.|...   +.......+..+...+..+.+|-++.-++-.+..   +++.+... ......+.    |+.... 
T Consensus        66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~---~~~~l~~~-~~~~~~~~kilvTTR~~~v  141 (287)
T PF00931_consen   66 LLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE---DLEELREP-LPSFSSGSKILVTTRDRSV  141 (287)
T ss_dssp             HHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH---HH--------HCHHSS-EEEEEESCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccceeeeeeecccc---cccccccc-ccccccccccccccccccc
Confidence            455555555433   2233333445566677778888877776544433   44444432 22222121    111111 


Q ss_pred             ---hh-------chhhhhhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhh
Q 041391          141 ---LG-------ELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMF  210 (704)
Q Consensus       141 ---~~-------~~~~~~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l  210 (704)
                         ++       .+...+-++++||++.|+......++.+++++++|+++|+|+|||               +..+|+.+
T Consensus       142 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa---------------l~~~a~~l  206 (287)
T PF00931_consen  142 AGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA---------------LKLIASYL  206 (287)
T ss_dssp             GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH---------------HHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------cccccccc
Confidence               11       111223467899999999875334567788999999999999999               78888888


Q ss_pred             hccccccchhhHHH---------------HHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccc
Q 041391          211 INFREKFGFDEFME---------------MIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAE  274 (704)
Q Consensus       211 ~~~~~~~~w~~~~~---------------i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~  274 (704)
                      +.+.+..+|+.+.+               ++.++.+||+.||+++|.||+|||+||+++.|+++.||++|++||||+..
T Consensus       207 ~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  207 RSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             HHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             cccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            66666778876543               88899999999999999999999999999999999999999999999643

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.58  E-value=1.2e-17  Score=171.04  Aligned_cols=245  Identities=23%  Similarity=0.219  Sum_probs=188.5

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +.++..|.+|++++|.++          .+|++++.+..++.|+.++| .+..+|..++.+.+|..|++++| ...++|+
T Consensus        64 l~nL~~l~vl~~~~n~l~----------~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~  131 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS----------QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN-ELKELPD  131 (565)
T ss_pred             hhcccceeEEEeccchhh----------hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc-ceeecCc
Confidence            567888899999999765          67899999999999999997 57889999999999999999986 6778889


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                      +++.+..|..|+..+|.+ ..+|.+++.+.+|..|      ++.+|++...+++.. .|+.|++|+...|-+    ..+|
T Consensus       132 ~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l------~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L----~tlP  199 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKL------DLEGNKLKALPENHI-AMKRLKHLDCNSNLL----ETLP  199 (565)
T ss_pred             hHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHh------hccccchhhCCHHHH-HHHHHHhcccchhhh----hcCC
Confidence            999999999999998884 5788888888888888      588898888888888 789999998887754    3445


Q ss_pred             HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc-ccccceeEEEEEcCCCCCCcccCCCC
Q 041391          538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG-QKDRLLEKLDLHCFPLESLPNWLSGL  616 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~lp~~L~~L~Ls~~~l~~lP~~l~~l  616 (704)
                      ..++.+.+|..|++..|.+.. .| .+.....+..+  .......+.+|.... ++ .+|..|+|..|++.++|+.+..+
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~El--h~g~N~i~~lpae~~~~L-~~l~vLDLRdNklke~Pde~clL  274 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKEL--HVGENQIEMLPAEHLKHL-NSLLVLDLRDNKLKEVPDEICLL  274 (565)
T ss_pred             hhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHH--HhcccHHHhhHHHHhccc-ccceeeeccccccccCchHHHHh
Confidence            678889999999999888642 22 33332222222  112223344555544 45 48888899999999999888777


Q ss_pred             -CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccc
Q 041391          617 -NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL  653 (704)
Q Consensus       617 -~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L  653 (704)
                       +|++|++++|.++.+|..... + +|+.|.+.+.+.-
T Consensus       275 rsL~rLDlSNN~is~Lp~sLgn-l-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPYSLGN-L-HLKFLALEGNPLR  310 (565)
T ss_pred             hhhhhhcccCCccccCCccccc-c-eeeehhhcCCchH
Confidence             889999999998888876554 3 6777777766543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=2.3e-16  Score=161.89  Aligned_cols=261  Identities=23%  Similarity=0.247  Sum_probs=196.0

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      ..|..|++++|.+.          .+-..+.++..|.+|++.+| .+..+|.+++.+..++.|+.++| .+.++|..++.
T Consensus        45 v~l~~lils~N~l~----------~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s  112 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE----------VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS  112 (565)
T ss_pred             cchhhhhhccCchh----------hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh
Confidence            45677889999664          34566889999999999997 57889999999999999999997 77899999999


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                      +.+|++|+.+.|.+ ..+|++++.+..|..|      +..+|++...+++++ .+.+|..|.+.+|++....    ...-
T Consensus       113 ~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl------~~~~N~i~slp~~~~-~~~~l~~l~~~~n~l~~l~----~~~i  180 (565)
T KOG0472|consen  113 LISLVKLDCSSNEL-KELPDSIGRLLDLEDL------DATNNQISSLPEDMV-NLSKLSKLDLEGNKLKALP----ENHI  180 (565)
T ss_pred             hhhhhhhhccccce-eecCchHHHHhhhhhh------hccccccccCchHHH-HHHHHHHhhccccchhhCC----HHHH
Confidence            99999999999985 4788889999999999      588899999999999 9999999999999875433    3444


Q ss_pred             cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC-CC-Cee
Q 041391          542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS-GL-NLR  619 (704)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~-~l-~L~  619 (704)
                      +++.|++|+...|.+ ...|+.......+..+.  ........+| .|+.+ +.|++|+++.|.+..+|..+. .+ +|.
T Consensus       181 ~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~Ly--L~~Nki~~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLL-ETLPPELGGLESLELLY--LRRNKIRFLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             HHHHHHhcccchhhh-hcCChhhcchhhhHHHH--hhhcccccCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccce
Confidence            589999999988774 34444444433333221  1122334455 55555 578999998888888887765 45 899


Q ss_pred             EEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-CcCCCccEEeeecCC
Q 041391          620 KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALFPDLEYLEKFNCP  676 (704)
Q Consensus       620 ~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~p~L~~L~i~~C~  676 (704)
                      .|+|..|+++++|..+.- +.+|+.|++++...-.   -... |.+ .|+.|.+.|+|
T Consensus       256 vLDLRdNklke~Pde~cl-LrsL~rLDlSNN~is~---Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  256 VLDLRDNKLKEVPDEICL-LRSLERLDLSNNDISS---LPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             eeeccccccccCchHHHH-hhhhhhhcccCCcccc---CCcccccc-eeeehhhcCCc
Confidence            999999999999887643 5667777776642111   1111 444 66777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=1.1e-13  Score=160.74  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=56.1

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      .|+.|+|++|.++          .+|..+.  .+|++|+|++| .+..+|..+.  .+|+.|+|++| .+..+|..+.  
T Consensus       200 ~L~~L~Ls~N~Lt----------sLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--  261 (754)
T PRK15370        200 QITTLILDNNELK----------SLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--  261 (754)
T ss_pred             CCcEEEecCCCCC----------cCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--
Confidence            4555666655443          2333322  35555565555 3445554332  34555555555 2335554442  


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA  530 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~  530 (704)
                      .+|+.|++++|.+. .+|..+.  ++|+.|      ++++|++...+..+.   ++|+.|++++|.+.
T Consensus       262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L------~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPENLP--EELRYL------SVYDNSIRTLPAHLP---SGITHLNVQSNSLT  317 (754)
T ss_pred             CCCCEEECcCCccC-ccccccC--CCCcEE------ECCCCccccCcccch---hhHHHHHhcCCccc
Confidence            35555555555433 3444332  245555      355555444332222   24555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=1.2e-13  Score=160.33  Aligned_cols=247  Identities=19%  Similarity=0.227  Sum_probs=157.7

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      .+...|+++++.++          .+|..+.  ++|+.|+|++| .+..+|..+.  .+|++|++++| .+..+|..+. 
T Consensus       178 ~~~~~L~L~~~~Lt----------sLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~-  240 (754)
T PRK15370        178 NNKTELRLKILGLT----------TIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP-  240 (754)
T ss_pred             cCceEEEeCCCCcC----------cCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh-
Confidence            45678999998776          3454443  57999999998 5778998765  59999999998 5668887664 


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                       .+|+.|++++|.+. .+|..+.  ++|+.|      ++++|.+...+..+.   .+|+.|++++|.+... +   ..+.
T Consensus       241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L------~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~L-P---~~lp  303 (754)
T PRK15370        241 -DTIQEMELSINRIT-ELPERLP--SALQSL------DLFHNKISCLPENLP---EELRYLSVYDNSIRTL-P---AHLP  303 (754)
T ss_pred             -ccccEEECcCCccC-cCChhHh--CCCCEE------ECcCCccCccccccC---CCCcEEECCCCccccC-c---ccch
Confidence             47999999999855 7887664  579999      588888876554444   5899999999987642 2   2221


Q ss_pred             cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391          542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL  621 (704)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L  621 (704)
                        ++|+.|++++|.+.. .+....  ..+..+. +.. .....+|..+   |++|+.|+|++|.+..+|..+.. +|+.|
T Consensus       304 --~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~-Ls~-N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~lp~-~L~~L  372 (754)
T PRK15370        304 --SGITHLNVQSNSLTA-LPETLP--PGLKTLE-AGE-NALTSLPASL---PPELQVLDVSKNQITVLPETLPP-TITTL  372 (754)
T ss_pred             --hhHHHHHhcCCcccc-CCcccc--ccceecc-ccC-CccccCChhh---cCcccEEECCCCCCCcCChhhcC-CcCEE
Confidence              468888888888653 221111  1111111 111 1223344433   34677777777777766654422 67777


Q ss_pred             EEEcCCCCCcCCCccCCCCCcCEEecCCCccccccc--ccccCcCCCccEEeeecCC
Q 041391          622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNW--RELQALFPDLEYLEKFNCP  676 (704)
Q Consensus       622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~--~~l~~~~p~L~~L~i~~C~  676 (704)
                      +|++|.+..+|....   ..|+.|+++++..-.+..  ..+...+|.+..|.+.++|
T Consensus       373 dLs~N~Lt~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        373 DVSRNALTNLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ECCCCcCCCCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            777777776665432   356666666643211110  0111334667777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.45  E-value=2.5e-15  Score=168.55  Aligned_cols=241  Identities=23%  Similarity=0.273  Sum_probs=134.2

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      .+|++++++.|.++          .+|.+++.+.+|..|+..+| .+..+|..+....+|+.|++..| .+..+|.....
T Consensus       241 ~nl~~~dis~n~l~----------~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~  308 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS----------NLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEG  308 (1081)
T ss_pred             ccceeeecchhhhh----------cchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc
Confidence            46777777777664          45677777777887777776 45777777777777777777776 56667777777


Q ss_pred             cCCCcEEEccCcccccccCccC-CCCC-CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          462 LKKLTYLDISECYLIEYMPKEL-SSLS-ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i-~~L~-~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      ++.|++|+|..|. +..+|+.+ ..+. +|..|      +.+.|.+...+..-...+..|+.|++.+|.++...   ...
T Consensus       309 ~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l------n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c---~p~  378 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL------NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC---FPV  378 (1081)
T ss_pred             cceeeeeeehhcc-ccccchHHHhhhhHHHHHH------hhhhccccccccccchhhHHHHHHHHhcCcccccc---hhh
Confidence            7777788777776 34555532 1121 14444      23444333322111113445666666666655432   234


Q ss_pred             hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc-ccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391          540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT-FGQKDRLLEKLDLHCFPLESLPNWLSGL-N  617 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~  617 (704)
                      |.++.+|+.|+|++|.+..                          +|.. +.++ ..|++|+|+||.++.+|..+..+ .
T Consensus       379 l~~~~hLKVLhLsyNrL~~--------------------------fpas~~~kl-e~LeeL~LSGNkL~~Lp~tva~~~~  431 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNS--------------------------FPASKLRKL-EELEELNLSGNKLTTLPDTVANLGR  431 (1081)
T ss_pred             hccccceeeeeeccccccc--------------------------CCHHHHhch-HHhHHHhcccchhhhhhHHHHhhhh
Confidence            5666666666666665422                          2221 1222 35566666666666666555555 5


Q ss_pred             eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-CcC-CCccEEeeecCC
Q 041391          618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALF-PDLEYLEKFNCP  676 (704)
Q Consensus       618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~-p~L~~L~i~~C~  676 (704)
                      |+.|...+|.+..+|..  ..++.|++++++.+ .|+  ...+. ... |+|++|+++|++
T Consensus       432 L~tL~ahsN~l~~fPe~--~~l~qL~~lDlS~N-~L~--~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSFPEL--AQLPQLKVLDLSCN-NLS--EVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHhhcCCceeechhh--hhcCcceEEecccc-hhh--hhhhhhhCCCcccceeeccCCc
Confidence            66666666666555521  22555555555432 222  11111 112 456666666555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=3.1e-15  Score=137.14  Aligned_cols=156  Identities=27%  Similarity=0.372  Sum_probs=133.0

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..|.+++.|.|++|.++          .+|+.+..+.+|+.|++++| .+.++|.+++.|+.|++|+++-| .+..+|.
T Consensus        29 Lf~~s~ITrLtLSHNKl~----------~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lpr   96 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT----------VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPR   96 (264)
T ss_pred             ccchhhhhhhhcccCcee----------ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCcc
Confidence            456788888999999776          56888999999999999997 58899999999999999999986 6788999


Q ss_pred             cccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          458 GLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      +|+.++.|+.||+++|.+.+ .+|..|..|+.|+.|+      ++.|.+.-.+++++ ++++|+.|.+..|.+.    .+
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlraly------l~dndfe~lp~dvg-~lt~lqil~lrdndll----~l  165 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY------LGDNDFEILPPDVG-KLTNLQILSLRDNDLL----SL  165 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHH------hcCCCcccCChhhh-hhcceeEEeeccCchh----hC
Confidence            99999999999999887654 5777788888888885      88888888888999 9999999999988653    45


Q ss_pred             HHHhccCCCccEEEEEecCC
Q 041391          537 SESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~l  556 (704)
                      |..++.+++|++|++.+|++
T Consensus       166 pkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cHHHHHHHHHHHHhccccee
Confidence            57788999999999999885

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-15  Score=137.69  Aligned_cols=165  Identities=29%  Similarity=0.359  Sum_probs=138.5

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      +..+.+...|.|++| .+..+|..|..|.+|++|++++| .++++|..+..|++|++|+++-|+ +..+|.+|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence            456778889999998 57888888999999999999986 789999999999999999999987 568999999999999


Q ss_pred             eecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccc
Q 041391          491 VLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNE  568 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  568 (704)
                      .|      ++.+|++...  +..++ .|+.|+.|+++.|.+.    .+|..++++++|+.|.+..|.+.+          
T Consensus       106 vl------dltynnl~e~~lpgnff-~m~tlralyl~dndfe----~lp~dvg~lt~lqil~lrdndll~----------  164 (264)
T KOG0617|consen  106 VL------DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE----ILPPDVGKLTNLQILSLRDNDLLS----------  164 (264)
T ss_pred             hh------hccccccccccCCcchh-HHHHHHHHHhcCCCcc----cCChhhhhhcceeEEeeccCchhh----------
Confidence            99      6888877653  35677 8889999999999764    344678899999999999888432          


Q ss_pred             cchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC
Q 041391          569 HNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL  616 (704)
Q Consensus       569 ~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l  616 (704)
                                      +|..++.+ ..|++|++.+|.+..+|..+..+
T Consensus       165 ----------------lpkeig~l-t~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  165 ----------------LPKEIGDL-TRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             ----------------CcHHHHHH-HHHHHHhcccceeeecChhhhhh
Confidence                            67777777 58999999999998888876654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=6.1e-13  Score=153.75  Aligned_cols=235  Identities=21%  Similarity=0.115  Sum_probs=157.1

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      .+|+.|++.+|.++.          +|.   .+++|++|+|++| .++.+|..   ..+|+.|++++| .+..+|..   
T Consensus       222 ~~L~~L~L~~N~Lt~----------LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l---  280 (788)
T PRK15387        222 AHITTLVIPDNNLTS----------LPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-PLTHLPAL---  280 (788)
T ss_pred             cCCCEEEccCCcCCC----------CCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC-chhhhhhc---
Confidence            378888898887763          332   2478899999987 56677753   467888999887 45566653   


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                      ..+|+.|++++|.+. .+|.   .+++|+.|      ++++|.+... +.+.   .+|+.|++++|.+.. ++.++    
T Consensus       281 p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~L------dLS~N~L~~L-p~lp---~~L~~L~Ls~N~L~~-LP~lp----  341 (788)
T PRK15387        281 PSGLCKLWIFGNQLT-SLPV---LPPGLQEL------SVSDNQLASL-PALP---SELCKLWAYNNQLTS-LPTLP----  341 (788)
T ss_pred             hhhcCEEECcCCccc-cccc---ccccccee------ECCCCccccC-CCCc---ccccccccccCcccc-ccccc----
Confidence            356888999998754 5665   24678888      5888887754 3333   467888898888753 33221    


Q ss_pred             cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391          542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL  621 (704)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L  621 (704)
                        .+|+.|+|++|.+.. .|...   ..+..+ .+..| ....+|.    .+.+|+.|+|++|.+..+|....  +|+.|
T Consensus       342 --~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L-~Ls~N-~L~~LP~----l~~~L~~LdLs~N~Lt~LP~l~s--~L~~L  407 (788)
T PRK15387        342 --SGLQELSVSDNQLAS-LPTLP---SELYKL-WAYNN-RLTSLPA----LPSGLKELIVSGNRLTSLPVLPS--ELKEL  407 (788)
T ss_pred             --cccceEecCCCccCC-CCCCC---ccccee-hhhcc-ccccCcc----cccccceEEecCCcccCCCCccc--CCCEE
Confidence              479999999998764 33211   111111 11222 2334543    34689999999999988886543  89999


Q ss_pred             EEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCC
Q 041391          622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP  676 (704)
Q Consensus       622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~  676 (704)
                      ++++|.+..+|..    +.+|+.|+|+++..-.+.. . ...+++|+.|++.+++
T Consensus       408 dLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~-s-l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        408 MVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPE-S-LIHLSSETTVNLEGNP  456 (788)
T ss_pred             EccCCcCCCCCcc----hhhhhhhhhccCcccccCh-H-HhhccCCCeEECCCCC
Confidence            9999999888753    3567777777644222111 1 1457899999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=1.3e-14  Score=162.81  Aligned_cols=257  Identities=22%  Similarity=0.250  Sum_probs=188.7

Q ss_pred             eeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccC
Q 041391          362 ALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNL  441 (704)
Q Consensus       362 ~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L  441 (704)
                      .+....+.+..+. .|+..+.+|..|+..+|.++          .+|..+.....|++|...+| .+..+|....++++|
T Consensus       245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~----------~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL  312 (1081)
T KOG0618|consen  245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLV----------ALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSL  312 (1081)
T ss_pred             eeecchhhhhcch-HHHHhcccceEecccchhHH----------hhHHHHhhhhhHHHHHhhhh-hhhhCCCccccccee
Confidence            3333344455544 88999999999999999775          78899999999999999998 688999988889999


Q ss_pred             cEEeeecccCCCcCCccccc-cC-CCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccc-hhhHHhCCC
Q 041391          442 RVLDLRCCYYLTKLPKGLDS-LK-KLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICT-LEDLGNSLK  517 (704)
Q Consensus       442 ~~LdLs~c~~l~~lP~~i~~-L~-~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~-~~~l~~~L~  517 (704)
                      ++|+|..| .+..+|..+-. +. .|+.|+.+.|.+ ...|. +=..+..|+.|+      +.+|.++.. +|.+. ++.
T Consensus       313 ~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Ly------lanN~Ltd~c~p~l~-~~~  383 (1081)
T KOG0618|consen  313 RTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELY------LANNHLTDSCFPVLV-NFK  383 (1081)
T ss_pred             eeeeehhc-cccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHH------HhcCcccccchhhhc-ccc
Confidence            99999997 77888875432 33 377788777763 34442 123566788885      888887765 57777 999


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccccccee
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE  597 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~  597 (704)
                      +|+.|++++|++.. .++  ..+.+++.|+.|+|++|.+..                          +|..+..+ ..|+
T Consensus       384 hLKVLhLsyNrL~~-fpa--s~~~kle~LeeL~LSGNkL~~--------------------------Lp~tva~~-~~L~  433 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNS-FPA--SKLRKLEELEELNLSGNKLTT--------------------------LPDTVANL-GRLH  433 (1081)
T ss_pred             ceeeeeeccccccc-CCH--HHHhchHHhHHHhcccchhhh--------------------------hhHHHHhh-hhhH
Confidence            99999999998763 343  578999999999999999543                          56666666 4788


Q ss_pred             EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391          598 KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN  674 (704)
Q Consensus       598 ~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~  674 (704)
                      +|...+|.+..+| .+..+ .|+.+||+.|++..+.......-|+|++|+|+++..+.+..    ..||.++.+...+
T Consensus       434 tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~----~~l~~l~~l~~~~  506 (1081)
T KOG0618|consen  434 TLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH----KTLKVLKSLSQMD  506 (1081)
T ss_pred             HHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch----hhhHHhhhhhhee
Confidence            8888888888888 45555 88888888888855432222222788888888876654322    2345555544443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.37  E-value=1.9e-12  Score=149.68  Aligned_cols=216  Identities=24%  Similarity=0.104  Sum_probs=136.7

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      +++|++|+|++|.++.          +|.   ..++|+.|+|++| .+..+|...   .+|+.|+|++| .+..+|..  
T Consensus       241 p~~Lk~LdLs~N~Lts----------LP~---lp~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~--  300 (788)
T PRK15387        241 PPELRTLEVSGNQLTS----------LPV---LPPGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN-QLTSLPVL--  300 (788)
T ss_pred             CCCCcEEEecCCccCc----------ccC---cccccceeeccCC-chhhhhhch---hhcCEEECcCC-cccccccc--
Confidence            5789999999998863          332   1357788888887 466676532   56778888887 45667653  


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHh
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESL  540 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L  540 (704)
                       +++|++|++++|.+. .+|...   .+|+.|      .+++|.+.. +|.+.   .+|+.|++++|++.. ++.+    
T Consensus       301 -p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L------~Ls~N~L~~-LP~lp---~~Lq~LdLS~N~Ls~-LP~l----  360 (788)
T PRK15387        301 -PPGLQELSVSDNQLA-SLPALP---SELCKL------WAYNNQLTS-LPTLP---SGLQELSVSDNQLAS-LPTL----  360 (788)
T ss_pred             -ccccceeECCCCccc-cCCCCc---cccccc------ccccCcccc-ccccc---cccceEecCCCccCC-CCCC----
Confidence             467888888888754 455422   245555      356666553 33322   467777777777653 2221    


Q ss_pred             ccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeE
Q 041391          541 EKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRK  620 (704)
Q Consensus       541 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~  620 (704)
                        ..+|+.|++++|.+.. .+...   ..+..+ .+..| ....+|.    .+++|+.|++++|.+..+|....  +|+.
T Consensus       361 --p~~L~~L~Ls~N~L~~-LP~l~---~~L~~L-dLs~N-~Lt~LP~----l~s~L~~LdLS~N~LssIP~l~~--~L~~  426 (788)
T PRK15387        361 --PSELYKLWAYNNRLTS-LPALP---SGLKEL-IVSGN-RLTSLPV----LPSELKELMVSGNRLTSLPMLPS--GLLS  426 (788)
T ss_pred             --Ccccceehhhcccccc-Ccccc---cccceE-EecCC-cccCCCC----cccCCCEEEccCCcCCCCCcchh--hhhh
Confidence              1355666666666542 22111   011111 11111 1223443    34689999999999999986543  7889


Q ss_pred             EEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          621 LYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       621 L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      |++++|.++.+|.... .+++|+.|+|++++
T Consensus       427 L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~  456 (788)
T PRK15387        427 LSVYRNQLTRLPESLI-HLSSETTVNLEGNP  456 (788)
T ss_pred             hhhccCcccccChHHh-hccCCCeEECCCCC
Confidence            9999999999987644 47899999998865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.35  E-value=1.7e-13  Score=145.81  Aligned_cols=265  Identities=20%  Similarity=0.118  Sum_probs=148.8

Q ss_pred             hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCC------CCCchhhhccccCcEEeeeccc
Q 041391          377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI------REIPSSIANLSNLRVLDLRCCY  450 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l------~~lP~~l~~L~~L~~LdLs~c~  450 (704)
                      .|..+.+|++|+++++.++...     ...++..+...+.|++|+++++...      ..++..+..+++|+.|++++|.
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~-----~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEA-----AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHH-----HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            3556667888888888664311     1245666777777888888876432      1133456667788888888876


Q ss_pred             CCCcCCccccccCC---CcEEEccCccccc----ccCccCCCC-CCcceecccccccCCCCCCccc----h-hhHHhCCC
Q 041391          451 YLTKLPKGLDSLKK---LTYLDISECYLIE----YMPKELSSL-SELQVLKGFLVTDAKPNDKICT----L-EDLGNSLK  517 (704)
Q Consensus       451 ~l~~lP~~i~~L~~---L~~L~Ls~n~~~~----~lP~~i~~L-~~L~~L~~~~~~~ls~n~l~~~----~-~~l~~~L~  517 (704)
                      .....+..+..+.+   |++|++++|.+..    .+...+..+ ++|+.|      ++++|.+...    + ..+. .++
T Consensus        93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L------~L~~n~l~~~~~~~~~~~~~-~~~  165 (319)
T cd00116          93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL------VLGRNRLEGASCEALAKALR-ANR  165 (319)
T ss_pred             CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE------EcCCCcCCchHHHHHHHHHH-hCC
Confidence            65555555555555   8888888876542    222334455 677777      4777766522    1 2233 666


Q ss_pred             CCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          518 ELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      +|+.|++++|.+.+. .+.++..+..+++|+.|++++|.+....                     ...+...+..+ ++|
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---------------------~~~l~~~~~~~-~~L  223 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---------------------ASALAETLASL-KSL  223 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH---------------------HHHHHHHhccc-CCC
Confidence            788888887776532 2334455666678888888777643110                     00011222233 378


Q ss_pred             eEEEEEcCCCCC-----CcccCCC-C-CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCccccccccccc---C
Q 041391          597 EKLDLHCFPLES-----LPNWLSG-L-NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWRELQ---A  662 (704)
Q Consensus       597 ~~L~Ls~~~l~~-----lP~~l~~-l-~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~  662 (704)
                      ++|++++|.+..     +...+.. . .|++|++++|.++....    .....+++|+.++++++..-+-....+.   .
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~  303 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL  303 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence            888888776643     1112211 2 77888888877642110    1122346677777766443221001111   2


Q ss_pred             cC-CCccEEeeecC
Q 041391          663 LF-PDLEYLEKFNC  675 (704)
Q Consensus       663 ~~-p~L~~L~i~~C  675 (704)
                      .+ +.|+.|+|.+.
T Consensus       304 ~~~~~~~~~~~~~~  317 (319)
T cd00116         304 EPGNELESLWVKDD  317 (319)
T ss_pred             hcCCchhhcccCCC
Confidence            33 56666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.33  E-value=1.2e-13  Score=142.11  Aligned_cols=105  Identities=21%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             ccccccceeEEEEEcCCCCCCc-ccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCC
Q 041391          589 FGQKDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPD  666 (704)
Q Consensus       589 ~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~  666 (704)
                      |..+ ++|++|+|++|.++.+- .|+..+ .+++|.|..|++..+....+.++..|+.|+|.++..-.+.|..+. ..-+
T Consensus       270 f~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~~~  347 (498)
T KOG4237|consen  270 FKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TLFS  347 (498)
T ss_pred             Hhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-ccce
Confidence            4455 49999999999998774 677777 999999999999999998999999999999988766556665553 4568


Q ss_pred             ccEEeeecCCCCCCCCCCCCCcccccCCC
Q 041391          667 LEYLEKFNCPMISFFPCDANGVWIKESSP  695 (704)
Q Consensus       667 L~~L~i~~C~~L~~lP~~~~~~W~~~~~~  695 (704)
                      |..|.+..+|-...+-..+.+.|++....
T Consensus       348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~  376 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRLAWLGEWLRKKSV  376 (498)
T ss_pred             eeeeehccCcccCccchHHHHHHHhhCCC
Confidence            88999999888777777766777766553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=7.5e-13  Score=140.94  Aligned_cols=254  Identities=22%  Similarity=0.123  Sum_probs=170.5

Q ss_pred             EEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCC----CCCchhhhccccCcEEeeecccCC------CcC
Q 041391          386 VLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI----REIPSSIANLSNLRVLDLRCCYYL------TKL  455 (704)
Q Consensus       386 ~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l----~~lP~~l~~L~~L~~LdLs~c~~l------~~l  455 (704)
                      .|+|..+.++..        ..+..+..+.+|++|++++|...    ..++..+...++|++|+++++...      ..+
T Consensus         2 ~l~L~~~~l~~~--------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~   73 (319)
T cd00116           2 QLSLKGELLKTE--------RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL   73 (319)
T ss_pred             ccccccCccccc--------chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence            366766665432        33455667777999999998532    235666777888999999987543      223


Q ss_pred             CccccccCCCcEEEccCcccccccCccCCCCCC---cceecccccccCCCCCCccc-----hhhHHhCC-CCCcEEEEEe
Q 041391          456 PKGLDSLKKLTYLDISECYLIEYMPKELSSLSE---LQVLKGFLVTDAKPNDKICT-----LEDLGNSL-KELRKLSIYV  526 (704)
Q Consensus       456 P~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~---L~~L~~~~~~~ls~n~l~~~-----~~~l~~~L-~~L~~L~L~~  526 (704)
                      +..+..+++|++|++++|.+....+..+..+.+   |++|      ++++|.+...     ...+. .+ ++|+.|++++
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L------~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~  146 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQEL------KLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGR  146 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEE------EeeCCccchHHHHHHHHHHH-hCCCCceEEEcCC
Confidence            456778899999999999876555555555554   9999      5888876632     12344 66 8999999999


Q ss_pred             eCCCCch-hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC
Q 041391          527 NNNAIPI-EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP  605 (704)
Q Consensus       527 n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~  605 (704)
                      |.+.... ..+...+..+++|++|++++|.+....            .         ..++..+... ++|+.|+|++|.
T Consensus       147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------~---------~~l~~~l~~~-~~L~~L~L~~n~  204 (319)
T cd00116         147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAG------------I---------RALAEGLKAN-CNLEVLDLNNNG  204 (319)
T ss_pred             CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH------------H---------HHHHHHHHhC-CCCCEEeccCCc
Confidence            9987432 345567888899999999998854210            0         0011222233 489999999998


Q ss_pred             CCC-----CcccCCCC-CeeEEEEEcCCCCCcCC-----CccCCCCCcCEEecCCCccccccccccc---CcCCCccEEe
Q 041391          606 LES-----LPNWLSGL-NLRKLYIRGGQLRSLQG-----DTHKKYSTVKVLRLRYLNELNVNWRELQ---ALFPDLEYLE  671 (704)
Q Consensus       606 l~~-----lP~~l~~l-~L~~L~Ls~n~l~~lp~-----~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~~~p~L~~L~  671 (704)
                      +..     ++..+... +|++|++++|.+.....     ......+.|+.|++.+|..-+.....+.   ..+++|++|+
T Consensus       205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            753     33344445 89999999998854211     1111247899999998854321111121   4568899999


Q ss_pred             eecCC
Q 041391          672 KFNCP  676 (704)
Q Consensus       672 i~~C~  676 (704)
                      +.+|.
T Consensus       285 l~~N~  289 (319)
T cd00116         285 LRGNK  289 (319)
T ss_pred             CCCCC
Confidence            99873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.27  E-value=2.4e-11  Score=143.53  Aligned_cols=287  Identities=24%  Similarity=0.239  Sum_probs=183.4

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCC-CCCCch-hhhccccCcEEeeecccCCCcCC
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYG-IREIPS-SIANLSNLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~-l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP  456 (704)
                      ......|.+.+.+|.+.          .++... ..+.|+.|-+.+|.. +..++. .|..++.|++|||++|...+++|
T Consensus       520 ~~~~~~rr~s~~~~~~~----------~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE----------HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             cchhheeEEEEeccchh----------hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            34456778888777542          233332 445799999999752 555554 47789999999999999999999


Q ss_pred             ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      ..|+.|.+||+|+++++. ...+|.++++|..|.+|      ++..+.....++.+...|.+|++|.+....... ....
T Consensus       589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~L------nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~  660 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYL------NLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLL  660 (889)
T ss_pred             hHHhhhhhhhcccccCCC-ccccchHHHHHHhhhee------ccccccccccccchhhhcccccEEEeecccccc-chhh
Confidence            999999999999999998 45899999999999999      466555444555555369999999998765222 1223


Q ss_pred             HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH-hhH-hhhcCCCCCCcccccccceeEEEEEcCCCCC------
Q 041391          537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE-DEA-ETQGKGGLDGTFGQKDRLLEKLDLHCFPLES------  608 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~------  608 (704)
                      ...+.++.+|+.|.+..... ... ........+.... .+. ........+..+..+ .+|+.|.+.+|.+.+      
T Consensus       661 l~el~~Le~L~~ls~~~~s~-~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~  737 (889)
T KOG4658|consen  661 LKELENLEHLENLSITISSV-LLL-EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISEIVIEWE  737 (889)
T ss_pred             HHhhhcccchhhheeecchh-HhH-hhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCchhhcccc
Confidence            35677788888887754442 000 0000000000000 000 011122233444455 488888888776532      


Q ss_pred             --------C----------------cccCCCC-CeeEEEEEcCCCCCcCCCc----------cCCCCCcCEE-ecCCCcc
Q 041391          609 --------L----------------PNWLSGL-NLRKLYIRGGQLRSLQGDT----------HKKYSTVKVL-RLRYLNE  652 (704)
Q Consensus       609 --------l----------------P~~l~~l-~L~~L~Ls~n~l~~lp~~~----------~~~f~~L~~L-~L~~l~~  652 (704)
                              +                +.|.... +|+.|.+..|...+.|...          ...|+++..+ .+.+++.
T Consensus       738 ~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~  817 (889)
T KOG4658|consen  738 ESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGG  817 (889)
T ss_pred             cccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCC
Confidence                    1                1222222 9999999999875444322          2234555555 3444444


Q ss_pred             cc-cccccccCcCCCccEEeeecCCCCCCCCCCCCCcc
Q 041391          653 LN-VNWRELQALFPDLEYLEKFNCPMISFFPCDANGVW  689 (704)
Q Consensus       653 L~-l~~~~l~~~~p~L~~L~i~~C~~L~~lP~~~~~~W  689 (704)
                      +. +.|..+  .+|+|+.+.+..||++..+|.++....
T Consensus       818 l~~i~~~~l--~~~~l~~~~ve~~p~l~~~P~~~~~~i  853 (889)
T KOG4658|consen  818 LPQLYWLPL--SFLKLEELIVEECPKLGKLPLLSTLTI  853 (889)
T ss_pred             CceeEeccc--CccchhheehhcCcccccCccccccce
Confidence            44 344444  567799999999999999999865433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.19  E-value=1.5e-12  Score=134.04  Aligned_cols=245  Identities=22%  Similarity=0.233  Sum_probs=157.0

Q ss_pred             eeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhcccc
Q 041391          362 ALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSN  440 (704)
Q Consensus       362 ~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~  440 (704)
                      .+....+.+..+.+.+|+.+++||.|||++|.++.+         -|.+|.++..|-.|-+.+|..++.+|. .|++|..
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I---------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI---------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhc---------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            344556777778888999999999999999988743         378899999999988888668999995 5889999


Q ss_pred             CcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccc--hh-------
Q 041391          441 LRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICT--LE-------  510 (704)
Q Consensus       441 L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~--~~-------  510 (704)
                      |+.|.+.-|...-.....+..|++|..|.+..|. ...++. .+..+.+++++.      +..|.+...  ++       
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh------lA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH------LAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh------hhcCccccccccchhhhHHh
Confidence            9999999886655666778999999999999887 445665 466777777763      222221100  00       


Q ss_pred             ----h------------------------HHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCC
Q 041391          511 ----D------------------------LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRN  562 (704)
Q Consensus       511 ----~------------------------l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~  562 (704)
                          +                        +.+.+..+..--.+.+......|+  ..|.++++|+.|+|++|.+....  
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~--~cf~~L~~L~~lnlsnN~i~~i~--  290 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA--KCFKKLPNLRKLNLSNNKITRIE--  290 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH--HHHhhcccceEeccCCCccchhh--
Confidence                0                        000001111001111212222232  35788888888888888864321  


Q ss_pred             cccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC-CC-CeeEEEEEcCCCCCcCCCccCCCC
Q 041391          563 QEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS-GL-NLRKLYIRGGQLRSLQGDTHKKYS  640 (704)
Q Consensus       563 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~-~l-~L~~L~Ls~n~l~~lp~~~~~~f~  640 (704)
                                             +.+|... ..+++|.|..|++..+...+. .+ .|+.|+|++|+++.+....++.+.
T Consensus       291 -----------------------~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  291 -----------------------DGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             -----------------------hhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence                                   1233333 366777777776655544332 23 677777777777666555555556


Q ss_pred             CcCEEecCCC
Q 041391          641 TVKVLRLRYL  650 (704)
Q Consensus       641 ~L~~L~L~~l  650 (704)
                      +|..|+|-.+
T Consensus       347 ~l~~l~l~~N  356 (498)
T KOG4237|consen  347 SLSTLNLLSN  356 (498)
T ss_pred             eeeeeehccC
Confidence            6666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=2.8e-11  Score=129.99  Aligned_cols=191  Identities=30%  Similarity=0.356  Sum_probs=128.0

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      .-...||+.|++.          ++|..++.+..|..|.|+.| .+..+|..+++|..|.+|||+.| .+..+|..+..|
T Consensus        76 dt~~aDlsrNR~~----------elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l  143 (722)
T KOG0532|consen   76 DTVFADLSRNRFS----------ELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL  143 (722)
T ss_pred             chhhhhccccccc----------cCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC
Confidence            3345677777654          56777777777888888876 56778888888888888888876 566777777766


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      + |+.|-+++|+ ++.+|..++.+..|..|      +.+.|++...++.++ .+.+|+.|.+..|++.    .+|..+..
T Consensus       144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~l------d~s~nei~slpsql~-~l~slr~l~vrRn~l~----~lp~El~~  210 (722)
T KOG0532|consen  144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHL------DVSKNEIQSLPSQLG-YLTSLRDLNVRRNHLE----DLPEELCS  210 (722)
T ss_pred             c-ceeEEEecCc-cccCCcccccchhHHHh------hhhhhhhhhchHHhh-hHHHHHHHHHhhhhhh----hCCHHHhC
Confidence            4 7777777776 45777777777777777      577777777777777 7777777777777653    22233443


Q ss_pred             CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC----Ce
Q 041391          543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL----NL  618 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l----~L  618 (704)
                      | .|..|+++.|++.                          .||-.|.++ .+|++|-|.+|.+.+=|..+...    =.
T Consensus       211 L-pLi~lDfScNkis--------------------------~iPv~fr~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKIS--------------------------YLPVDFRKM-RHLQVLQLENNPLQSPPAQICEKGKVHIF  262 (722)
T ss_pred             C-ceeeeecccCcee--------------------------ecchhhhhh-hhheeeeeccCCCCCChHHHHhccceeee
Confidence            3 4666666666642                          255555555 46777777777766665544332    44


Q ss_pred             eEEEEEcC
Q 041391          619 RKLYIRGG  626 (704)
Q Consensus       619 ~~L~Ls~n  626 (704)
                      ++|++..|
T Consensus       263 KyL~~qA~  270 (722)
T KOG0532|consen  263 KYLSTQAC  270 (722)
T ss_pred             eeecchhc
Confidence            55666666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=1.4e-10  Score=124.64  Aligned_cols=156  Identities=26%  Similarity=0.306  Sum_probs=132.0

Q ss_pred             hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391          377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP  456 (704)
                      .+..|..|..|.|+.|.+.          .+|..++++..|.||+|+.| .+..+|..++.|+ |++|-+++| .++.+|
T Consensus        93 ~~~~f~~Le~liLy~n~~r----------~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp  159 (722)
T KOG0532|consen   93 EACAFVSLESLILYHNCIR----------TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLP  159 (722)
T ss_pred             HHHHHHHHHHHHHHhccce----------ecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCC
Confidence            3566777888889888665          57888999999999999997 5788999899886 999999976 788999


Q ss_pred             ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      ..++.+..|.+|+.+.|. +..+|..++.+.+|+.|      ++..|++...++++. .|+ |..|++++|++.    .+
T Consensus       160 ~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l------~vrRn~l~~lp~El~-~Lp-Li~lDfScNkis----~i  226 (722)
T KOG0532|consen  160 EEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDL------NVRRNHLEDLPEELC-SLP-LIRLDFSCNKIS----YL  226 (722)
T ss_pred             cccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHH------HHhhhhhhhCCHHHh-CCc-eeeeecccCcee----ec
Confidence            999999999999999998 45788889999999999      588888888888888 664 889999999875    33


Q ss_pred             HHHhccCCCccEEEEEecCCCC
Q 041391          537 SESLEKFKNLLKLKIAWGAGYS  558 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~l~~  558 (704)
                      |..|.+|++|++|.|.+|.+.+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC
Confidence            4778999999999999998653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.73  E-value=6.6e-09  Score=99.59  Aligned_cols=131  Identities=27%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      .+...++.|+|.+|.++.+           +.++ .+.+|+.|+|++| .+..++. +..|++|++|++++| .+..++.
T Consensus        16 ~n~~~~~~L~L~~n~I~~I-----------e~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~   81 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI-----------ENLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISE   81 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CH
T ss_pred             ccccccccccccccccccc-----------cchhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCcccc
Confidence            4455678888888866532           2344 4677888888887 5666764 777888888888876 4555654


Q ss_pred             cc-cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          458 GL-DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       458 ~i-~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      .+ ..+++|++|++++|.+.        .+..+..                    +. .+++|+.|++.+|.+.....--
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~--------~l~~l~~--------------------L~-~l~~L~~L~L~~NPv~~~~~YR  132 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKIS--------DLNELEP--------------------LS-SLPKLRVLSLEGNPVCEKKNYR  132 (175)
T ss_dssp             HHHHH-TT--EEE-TTS-----------SCCCCGG--------------------GG-G-TT--EEE-TT-GGGGSTTHH
T ss_pred             chHHhCCcCCEEECcCCcCC--------ChHHhHH--------------------HH-cCCCcceeeccCCcccchhhHH
Confidence            55 35788888888887632        2222222                    22 5566777777777654332222


Q ss_pred             HHHhccCCCccEEEEE
Q 041391          537 SESLEKFKNLLKLKIA  552 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls  552 (704)
                      ...+..+++|+.|+-.
T Consensus       133 ~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  133 LFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHHHH-TT-SEETTE
T ss_pred             HHHHHHcChhheeCCE
Confidence            2346667777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.5e-09  Score=110.20  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             cCCcccceeeeeccCCCCCCch--hhhccccCcEEeeecccCCCc---CCccccccCCCcEEEccCcc
Q 041391          412 KNMSALRLLSLQGVYGIREIPS--SIANLSNLRVLDLRCCYYLTK---LPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~--~l~~L~~L~~LdLs~c~~l~~---lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      .++..||...|.++ .+...+.  ....|++++.|||++| ....   +-.-...|++|+.|+++.|.
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence            45666666666664 3444442  3455666666666665 2221   11223455566666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.63  E-value=1.7e-08  Score=111.14  Aligned_cols=179  Identities=34%  Similarity=0.400  Sum_probs=103.9

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccc-cCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLS-NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL  489 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~-~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L  489 (704)
                      +..+..+..|++.+| .+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|.+ ..+|...+.+++|
T Consensus       112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhh
Confidence            344466666666665 4566666555553 6777777665 4555555666666777777766663 3455544466666


Q ss_pred             ceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391          490 QVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH  569 (704)
Q Consensus       490 ~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  569 (704)
                      +.|      .+++|.+......+. .+..|+.|.+++|...    ..+..+.++.++..|.+..|.+..           
T Consensus       189 ~~L------~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~----~~~~~~~~~~~l~~l~l~~n~~~~-----------  246 (394)
T COG4886         189 NNL------DLSGNKISDLPPEIE-LLSALEELDLSNNSII----ELLSSLSNLKNLSGLELSNNKLED-----------  246 (394)
T ss_pred             hhe------eccCCccccCchhhh-hhhhhhhhhhcCCcce----ecchhhhhcccccccccCCceeee-----------
Confidence            666      466666555444433 4455666666666421    112345556666666655555221           


Q ss_pred             chhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCc
Q 041391          570 NKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSL  631 (704)
Q Consensus       570 ~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~l  631 (704)
                                     ++..+..+ .+|+.|++++|.+..++. +..+ +|+.|+++++.+...
T Consensus       247 ---------------~~~~~~~l-~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         247 ---------------LPESIGNL-SNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ---------------ccchhccc-cccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence                           12233333 357777777777777765 5555 777777777766444

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=6.2e-08  Score=112.29  Aligned_cols=78  Identities=24%  Similarity=0.416  Sum_probs=41.0

Q ss_pred             hhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCC
Q 041391          407 FLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELS  484 (704)
Q Consensus       407 lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~  484 (704)
                      +|..++.+++|++|+|++|...+.+|..++.+++|++|+|++|...+.+|..+++|++|++|+|++|.+.+.+|..++
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence            344455555555555555544445555555555555555555544455555555555555555555555555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=1.3e-08  Score=101.83  Aligned_cols=204  Identities=18%  Similarity=0.175  Sum_probs=111.2

Q ss_pred             CchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-
Q 041391          431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-  509 (704)
Q Consensus       431 lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-  509 (704)
                      +|-.+.-+.+|..+.++.|. ...+-.-...-+.|+++.+.+.. +...|. +-..+.+..+.     .-...-..+.. 
T Consensus       206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~D~~-----~~E~~t~~G~~~  277 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILADPS-----GSEPSTSNGSAL  277 (490)
T ss_pred             cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cccccc-ccchhhhcCcc-----CCCCCccCCceE
Confidence            34345556677777777762 22222212223456677665543 112221 22222222221     00011111111 


Q ss_pred             hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcc
Q 041391          510 EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF  589 (704)
Q Consensus       510 ~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  589 (704)
                      ..+. ..+.|+.|++++|.+.    .+-++..-++.++.|+++.|.+...                           ..+
T Consensus       278 ~~~d-TWq~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~N~i~~v---------------------------~nL  325 (490)
T KOG1259|consen  278 VSAD-TWQELTELDLSGNLIT----QIDESVKLAPKLRRLILSQNRIRTV---------------------------QNL  325 (490)
T ss_pred             Eecc-hHhhhhhccccccchh----hhhhhhhhccceeEEeccccceeee---------------------------hhh
Confidence            1222 4456778888887654    2235666677888888888875321                           113


Q ss_pred             cccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCcc
Q 041391          590 GQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLE  668 (704)
Q Consensus       590 ~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~  668 (704)
                      ..+ .+|+.|+|++|.+..+-.|-..+ |++.|.|++|.+.++.+.  ..+-+|..|+++++..-++.--.-.|.+|+|+
T Consensus       326 a~L-~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  326 AEL-PQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGL--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             hhc-ccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhh--HhhhhheeccccccchhhHHHhcccccccHHH
Confidence            344 37888888888887777776666 888888888887666543  22456666666654322222222227788888


Q ss_pred             EEeeecCCC
Q 041391          669 YLEKFNCPM  677 (704)
Q Consensus       669 ~L~i~~C~~  677 (704)
                      .|.+.++|-
T Consensus       403 ~l~L~~NPl  411 (490)
T KOG1259|consen  403 TLRLTGNPL  411 (490)
T ss_pred             HHhhcCCCc
Confidence            888888763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.59  E-value=3e-08  Score=109.09  Aligned_cols=182  Identities=30%  Similarity=0.353  Sum_probs=140.9

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP  456 (704)
                      +..++.+..|++.++.++          .+|.....+. +|+.|++++| .+..+|..+..+++|+.|++++| .+..+|
T Consensus       112 ~~~~~~l~~L~l~~n~i~----------~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~  179 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT----------DIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLP  179 (394)
T ss_pred             hhcccceeEEecCCcccc----------cCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhh
Confidence            445578999999999765          5566666774 9999999997 57888877999999999999997 677888


Q ss_pred             ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      ...+.+++|+.|++++|. ...+|..+..+..|++|      .+++|.....+..+. .+.++..|.+.+|++...    
T Consensus       180 ~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l------~~~~N~~~~~~~~~~-~~~~l~~l~l~~n~~~~~----  247 (394)
T COG4886         180 KLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEEL------DLSNNSIIELLSSLS-NLKNLSGLELSNNKLEDL----  247 (394)
T ss_pred             hhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhh------hhcCCcceecchhhh-hcccccccccCCceeeec----
Confidence            877789999999999998 45778766677779998      477776666677777 888888888888875431    


Q ss_pred             HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc
Q 041391          537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN  611 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~  611 (704)
                      +..+..++.|+.|+++.|.+..                          ++. +... .+|+.|+++++.+...+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~--------------------------i~~-~~~~-~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISS--------------------------ISS-LGSL-TNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cchhccccccceeccccccccc--------------------------ccc-cccc-CccCEEeccCccccccch
Confidence            3567888889999999888543                          222 3344 589999999887765543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.49  E-value=3.1e-08  Score=99.11  Aligned_cols=229  Identities=17%  Similarity=0.085  Sum_probs=135.1

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      -+..|.+|.+++..-... ..++....+|-.+.-+.+|..+.+++|. ...+-+-...-+.|+++..++. -+...|. +
T Consensus       180 f~~~l~~l~vs~~~~p~~-~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s-~~~~~~~-l  255 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPID-RSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT-TIQDVPS-L  255 (490)
T ss_pred             hhhheeEEEecCCCCCCc-cccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecc-ccccccc-c
Confidence            345666776665421100 0011122344455566778888888873 3333332223367888888763 2222221 1


Q ss_pred             cccCCCcEEEcc-CcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          460 DSLKKLTYLDIS-ECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       460 ~~L~~L~~L~Ls-~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      --+..+.-+.-. .....+.+-..+-..+.|++|      ++++|.+...-..+. -++.++.|+++.|.+...     .
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel------DLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v-----~  323 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTEL------DLSGNLITQIDESVK-LAPKLRRLILSQNRIRTV-----Q  323 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhc------cccccchhhhhhhhh-hccceeEEeccccceeee-----h
Confidence            111112111111 011112222233445677788      688888766656666 778899999999887532     3


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-N  617 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~  617 (704)
                      ++..+++|+.|+|++|.+..                          +..+-..+ .+++.|.|++|.+..+ +.+..+ +
T Consensus       324 nLa~L~~L~~LDLS~N~Ls~--------------------------~~Gwh~KL-GNIKtL~La~N~iE~L-SGL~KLYS  375 (490)
T KOG1259|consen  324 NLAELPQLQLLDLSGNLLAE--------------------------CVGWHLKL-GNIKTLKLAQNKIETL-SGLRKLYS  375 (490)
T ss_pred             hhhhcccceEeecccchhHh--------------------------hhhhHhhh-cCEeeeehhhhhHhhh-hhhHhhhh
Confidence            47888899999999887432                          22222334 4889999999888766 355566 9


Q ss_pred             eeEEEEEcCCCCCcCCC-ccCCCCCcCEEecCCCcc
Q 041391          618 LRKLYIRGGQLRSLQGD-THKKYSTVKVLRLRYLNE  652 (704)
Q Consensus       618 L~~L~Ls~n~l~~lp~~-~~~~f~~L~~L~L~~l~~  652 (704)
                      |..|++++|++..+... ....+|.|+.|.|.+++.
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             heeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            99999999998766532 345688899888887663

>PLN03150 hypothetical protein; Provisional

Probab=98.45  E-value=3e-07  Score=106.59  Aligned_cols=107  Identities=22%  Similarity=0.286  Sum_probs=56.8

Q ss_pred             CcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCCCC
Q 041391          441 LRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKEL  519 (704)
Q Consensus       441 L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L  519 (704)
                      ++.|+|++|...+.+|..++.|++|+.|+|++|.+.+.+|..++.+++|+.|      ++++|.+.+.+|+ +. .|++|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L------dLs~N~lsg~iP~~l~-~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL------DLSYNSFNGSIPESLG-QLTSL  492 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE------ECCCCCCCCCCchHHh-cCCCC
Confidence            4555555555555555555555555555555555555555555555555555      3555555544433 33 55556


Q ss_pred             cEEEEEeeCCCCchhhHHHHhcc-CCCccEEEEEecCCC
Q 041391          520 RKLSIYVNNNAIPIEKLSESLEK-FKNLLKLKIAWGAGY  557 (704)
Q Consensus       520 ~~L~L~~n~~~~~~~~l~~~L~~-l~~L~~L~Ls~n~l~  557 (704)
                      +.|++++|.+.+.++   ..+.. ..++..+++.+|...
T Consensus       493 ~~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        493 RILNLNGNSLSGRVP---AALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CEEECcCCcccccCC---hHHhhccccCceEEecCCccc
Confidence            666666555554443   22322 234455566555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=4.3e-08  Score=100.44  Aligned_cols=255  Identities=22%  Similarity=0.172  Sum_probs=134.8

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC----CCchh-------hhccccCcEE
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR----EIPSS-------IANLSNLRVL  444 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~----~lP~~-------l~~L~~L~~L  444 (704)
                      ..+..+..+..|+|++|.+...     ....+-+.+.+.++|+..+++.- ..+    ++|+.       +-..++|++|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~E-----Aa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l   97 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTE-----AARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL   97 (382)
T ss_pred             HHhcccCceEEEeccCCchhHH-----HHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence            3456778888889988865310     01234455677778888888873 332    33433       2344678888


Q ss_pred             eeecccCCCcCCcc----ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCc
Q 041391          445 DLRCCYYLTKLPKG----LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELR  520 (704)
Q Consensus       445 dLs~c~~l~~lP~~----i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~  520 (704)
                      |||.|-.-..-+..    +..+..|++|.|.+|.+...--..++.  .|.+|.        .+      .... .-++|+
T Consensus        98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~------kk~~-~~~~Lr  160 (382)
T KOG1909|consen   98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VN------KKAA-SKPKLR  160 (382)
T ss_pred             eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HH------hccC-CCcceE
Confidence            88877544333333    345667777777777532111011111  122220        00      0111 345677


Q ss_pred             EEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEE
Q 041391          521 KLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKL  599 (704)
Q Consensus       521 ~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L  599 (704)
                      ++....|++... ...+...+...+.|+.+.+..|.+...-         ..            .+...+..+ ++|+.|
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG---------~~------------al~eal~~~-~~LevL  218 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---------VT------------ALAEALEHC-PHLEVL  218 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCch---------hH------------HHHHHHHhC-Ccceee
Confidence            777777765422 2334455666677777777777653210         00            011223334 377777


Q ss_pred             EEEcCCCCC-----CcccCCCC-CeeEEEEEcCCCCCc-----CCCccCCCCCcCEEecCCCccccccccccc---CcCC
Q 041391          600 DLHCFPLES-----LPNWLSGL-NLRKLYIRGGQLRSL-----QGDTHKKYSTVKVLRLRYLNELNVNWRELQ---ALFP  665 (704)
Q Consensus       600 ~Ls~~~l~~-----lP~~l~~l-~L~~L~Ls~n~l~~l-----p~~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~~~p  665 (704)
                      +|..|.++.     +...+... +|+.|++++|.+..-     -......+|+|++|.|.++..-.-....+.   ...|
T Consensus       219 dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~  298 (382)
T KOG1909|consen  219 DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP  298 (382)
T ss_pred             ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence            777766532     11112222 577788887776321     122234477788887777543220000000   3477


Q ss_pred             CccEEeeecC
Q 041391          666 DLEYLEKFNC  675 (704)
Q Consensus       666 ~L~~L~i~~C  675 (704)
                      .|+.|.+.+|
T Consensus       299 dL~kLnLngN  308 (382)
T KOG1909|consen  299 DLEKLNLNGN  308 (382)
T ss_pred             hhHHhcCCcc
Confidence            8888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=7e-08  Score=101.42  Aligned_cols=211  Identities=20%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC---chhhhccccCcEEeeecccCCCcCC
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI---PSSIANLSNLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l---P~~l~~L~~L~~LdLs~c~~l~~lP  456 (704)
                      ++++||...|.++.+....      .+  .....|++++.|||++|- +...   -.-...|++|+.|+|+.|....-..
T Consensus       119 n~kkL~~IsLdn~~V~~~~------~~--~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAG------IE--EYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             hHHhhhheeecCccccccc------hh--hhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            4555666666655432110      00  234456666666666652 2211   1223456666666666653221111


Q ss_pred             cc-ccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCcc-chhhHHhCCCCCcEEEEEeeCCCCch
Q 041391          457 KG-LDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKIC-TLEDLGNSLKELRKLSIYVNNNAIPI  533 (704)
Q Consensus       457 ~~-i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~-~~~~l~~~L~~L~~L~L~~n~~~~~~  533 (704)
                      .. -..+.+|+.|.++.|.+...-. ..+..+++|+.|+      +..|.... ...... -+..|+.|+|++|.+....
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~------L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLY------LEANEIILIKATSTK-ILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhh------hhcccccceecchhh-hhhHHhhccccCCcccccc
Confidence            11 1245566666666665543211 1233456666663      55553111 111222 3456667777766654211


Q ss_pred             hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCccc-
Q 041391          534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW-  612 (704)
Q Consensus       534 ~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~-  612 (704)
                        ....++.++.|+.|.++.|.+.+...+....                  + .-...+ ++|+.|++..|++..+++. 
T Consensus       263 --~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s------------------~-~kt~~f-~kL~~L~i~~N~I~~w~sl~  320 (505)
T KOG3207|consen  263 --QGYKVGTLPGLNQLNLSSTGIASIAEPDVES------------------L-DKTHTF-PKLEYLNISENNIRDWRSLN  320 (505)
T ss_pred             --cccccccccchhhhhccccCcchhcCCCccc------------------h-hhhccc-ccceeeecccCccccccccc
Confidence              1134556667777777666654321111000                  0 001123 3677777777776555421 


Q ss_pred             -CCCC-CeeEEEEEcCCC
Q 041391          613 -LSGL-NLRKLYIRGGQL  628 (704)
Q Consensus       613 -l~~l-~L~~L~Ls~n~l  628 (704)
                       +..+ +|+.|.+..|.+
T Consensus       321 ~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  321 HLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhhccchhhhhhcccccc
Confidence             2222 666676666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.26  E-value=2.7e-07  Score=94.67  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             chhhcCCCCCccEEEcCCCCCcccchhhhccchhh-------HhccCCcccceeeeeccCCCCCCc----hhhhccccCc
Q 041391          374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL-------KELKNMSALRLLSLQGVYGIREIP----SSIANLSNLR  442 (704)
Q Consensus       374 ~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp-------~~l~~L~~Lr~L~Ls~n~~l~~lP----~~l~~L~~L~  442 (704)
                      ....+.+.++||.-++++-. ++.     ...++|       +.+..+++|++|+||.|-.-..-+    .-+..+..|+
T Consensus        50 i~~~L~~~~~L~~v~~sd~f-tGR-----~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~  123 (382)
T KOG1909|consen   50 IAKVLASKKELREVNLSDMF-TGR-----LKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLE  123 (382)
T ss_pred             HHHHHhhcccceeeehHhhh-cCC-----cHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHH
Confidence            34567888899999988652 211     112333       445677899999999985433333    3356789999


Q ss_pred             EEeeecccCCC
Q 041391          443 VLDLRCCYYLT  453 (704)
Q Consensus       443 ~LdLs~c~~l~  453 (704)
                      +|.|.+| .++
T Consensus       124 eL~L~N~-Glg  133 (382)
T KOG1909|consen  124 ELYLNNC-GLG  133 (382)
T ss_pred             HHhhhcC-CCC
Confidence            9999998 444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.2e-08  Score=99.09  Aligned_cols=179  Identities=18%  Similarity=0.200  Sum_probs=106.1

Q ss_pred             CcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          465 LTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       465 L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      |++|||++..++..-- .-++.+.+|+.|      .+.++++...+ ..+. .-.+|+.|+++.+.--.. ..+.-.+.+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~l------SlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~-n~~~ll~~s  258 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNL------SLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTE-NALQLLLSS  258 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhc------cccccccCcHHHHHHh-ccccceeeccccccccch-hHHHHHHHh
Confidence            5555555544322111 113455566666      36666655544 3555 667888888887753211 222345788


Q ss_pred             CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC----CCCcccCCCC-C
Q 041391          543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL----ESLPNWLSGL-N  617 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l----~~lP~~l~~l-~  617 (704)
                      ++.|..|+|+||.+....                        +...+.+..++|+.|+|+|+.-    ..+....... +
T Consensus       259 cs~L~~LNlsWc~l~~~~------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEK------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             hhhHhhcCchHhhccchh------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence            899999999999854321                        1111223335889999998752    1121111222 9


Q ss_pred             eeEEEEEcCCCCCc-CCCccCCCCCcCEEecCCCccccccccccc-CcCCCccEEeeecCC
Q 041391          618 LRKLYIRGGQLRSL-QGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALFPDLEYLEKFNCP  676 (704)
Q Consensus       618 L~~L~Ls~n~l~~l-p~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~p~L~~L~i~~C~  676 (704)
                      |.+|+|++|..-.- -...+..|+.|++|.++.|-.+. ....+. ...|+|.+|++.+|-
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEecccc
Confidence            99999999865211 11223458899999999987664 222222 678999999999884

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.15  E-value=9.3e-07  Score=84.85  Aligned_cols=111  Identities=27%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             hhccccCcEEeeecccCCCcCCcccc-ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHH
Q 041391          435 IANLSNLRVLDLRCCYYLTKLPKGLD-SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG  513 (704)
Q Consensus       435 l~~L~~L~~LdLs~c~~l~~lP~~i~-~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~  513 (704)
                      +.+..+++.|+|++| .+..+ +.++ .+.+|+.|++++|.+. .++ ++..++.|++|      .+++|.+....+.+.
T Consensus        15 ~~n~~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L------~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTL------DLSNNRISSISEGLD   84 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EE------E--SS---S-CHHHH
T ss_pred             ccccccccccccccc-ccccc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhc------ccCCCCCCccccchH
Confidence            344445566666665 23333 2343 3556666666666533 332 35566666666      466666655433443


Q ss_pred             hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391          514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      ..+++|+.|++++|++... .++ ..+..+++|+.|+|.+|++.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l-~~l-~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDL-NEL-EPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HH-TT--EEE-TTS---SC-CCC-GGGGG-TT--EEE-TT-GGG
T ss_pred             HhCCcCCEEECcCCcCCCh-HHh-HHHHcCCCcceeeccCCccc
Confidence            2567888888888876532 222 46788999999999999853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=3.8e-07  Score=100.94  Aligned_cols=177  Identities=29%  Similarity=0.334  Sum_probs=93.7

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      +..+.+|.+|++.+| .+..+...+..+.+|++|+|++| .++.+ ..+..++.|+.|++.+|.+. .+ .++..+++|+
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccCcch-hc-cCCccchhhh
Confidence            566667777777775 34444444666777777777765 44444 24556666777777777632 22 2344566666


Q ss_pred             eecccccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391          491 VLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH  569 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  569 (704)
                      .+      ++++|.+...-.. +. .+.+|+.+.+.+|.+...     ..+..+..+..+++..|.+...          
T Consensus       166 ~l------~l~~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~~i-----~~~~~~~~l~~~~l~~n~i~~~----------  223 (414)
T KOG0531|consen  166 LL------DLSYNRIVDIENDELS-ELISLEELDLGGNSIREI-----EGLDLLKKLVLLSLLDNKISKL----------  223 (414)
T ss_pred             cc------cCCcchhhhhhhhhhh-hccchHHHhccCCchhcc-----cchHHHHHHHHhhcccccceec----------
Confidence            66      4666664433331 34 666777777777654321     1222233333334444443210          


Q ss_pred             chhhHhhHhhhcCCCCCCcccccc-cceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCc
Q 041391          570 NKKQEDEAETQGKGGLDGTFGQKD-RLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSL  631 (704)
Q Consensus       570 ~~~l~~~~~~~~~~~l~~~~~~lp-~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~l  631 (704)
                                   ..++    ..+ .+|+.++++++.+..++..+..+ ++..|++..|++..+
T Consensus       224 -------------~~l~----~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  224 -------------EGLN----ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             -------------cCcc----cchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence                         0010    110 02667777777666554334444 666777776666433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.01  E-value=3.8e-06  Score=66.01  Aligned_cols=58  Identities=36%  Similarity=0.514  Sum_probs=29.2

Q ss_pred             ccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcc
Q 041391          416 ALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      +|++|++++| .+..+| ..|.++++|++|++++|.....-|..|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555554 344444 344555555555555543322223345555556666555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=6.8e-05  Score=80.76  Aligned_cols=65  Identities=23%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK  481 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~  481 (704)
                      +..+.++++|++++| .+..+|. +  ..+|+.|.+++|..+..+|..+.  .+|++|++++|..+..+|.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence            344566666666666 4566662 1  23566677766666666665442  4667777776644444554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.81  E-value=1.8e-05  Score=62.12  Aligned_cols=59  Identities=36%  Similarity=0.512  Sum_probs=45.1

Q ss_pred             ccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPND  504 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~  504 (704)
                      ++|++|++++| .+..+| ..+..+++|++|++++|.+....|..+..+++|++|      ++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L------~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL------DLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE------EETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE------eCcCCc
Confidence            46888999987 555666 457889999999999888765555567888888888      477765

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=2e-05  Score=84.82  Aligned_cols=84  Identities=17%  Similarity=0.274  Sum_probs=58.7

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+.+++.|++++|.++          .+| .  -..+|+.|.+++|..+..+|..+.  .+|++|++++|..+..+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~----------sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE----------SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc----------ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence            344688999999999665          344 1  123689999999888888887663  6899999999877777875


Q ss_pred             cccccCCCcEEEccCccc--ccccCcc
Q 041391          458 GLDSLKKLTYLDISECYL--IEYMPKE  482 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~--~~~lP~~  482 (704)
                      .      |+.|++.++..  .+.+|.+
T Consensus       113 s------Le~L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        113 S------VRSLEIKGSATDSIKNVPNG  133 (426)
T ss_pred             c------cceEEeCCCCCcccccCcch
Confidence            4      55666655432  3445553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=5.1e-06  Score=83.58  Aligned_cols=157  Identities=24%  Similarity=0.211  Sum_probs=91.8

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc--ccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK--GLD  460 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~--~i~  460 (704)
                      .|++|||++..++.        ..+-..+..+..|+.|.|.++..-..+-..+.+-.+|+.|+|+.|+...+..-  -+.
T Consensus       186 Rlq~lDLS~s~it~--------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV--------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhHHhhcchhheeH--------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence            57788888876642        24445567788888888888755555555677778888888888866554322  245


Q ss_pred             ccCCCcEEEccCcccccccCcc-CCC-CCCcceecccccccCCCCC---CccchhhHHhCCCCCcEEEEEeeCCCCchhh
Q 041391          461 SLKKLTYLDISECYLIEYMPKE-LSS-LSELQVLKGFLVTDAKPND---KICTLEDLGNSLKELRKLSIYVNNNAIPIEK  535 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~-i~~-L~~L~~L~~~~~~~ls~n~---l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~  535 (704)
                      +++.|..|++++|......-.. +.+ -.+|..|      +++++.   ....+..+...+++|..|+++.|....  +.
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L------NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~--~~  329 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL------NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK--ND  329 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhh------hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC--ch
Confidence            6778888888888654322110 111 1134444      233321   111233444466677777776664322  24


Q ss_pred             HHHHhccCCCccEEEEEecC
Q 041391          536 LSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       536 l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      ....|.+++.|++|.++.|.
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHHHHHhcchheeeehhhhc
Confidence            44556666667777666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.72  E-value=5.8e-06  Score=91.56  Aligned_cols=152  Identities=28%  Similarity=0.330  Sum_probs=98.1

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+++|..|++.+|.+..          +...+..+++|++|+|++| .++.+.. +..+..|+.|++++| .+..+ .
T Consensus        91 l~~~~~l~~l~l~~n~i~~----------i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N-~i~~~-~  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK----------IENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGN-LISDI-S  156 (414)
T ss_pred             cccccceeeeeccccchhh----------cccchhhhhcchheecccc-ccccccc-hhhccchhhheeccC-cchhc-c
Confidence            5678888999999997753          2222677889999999997 5777765 778888999999987 44444 3


Q ss_pred             cccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      .+..+++|+.+++++|.+...-+ . ...+.+|+.+      .+.+|.+. .+..+. .+..+..+++..|.+...    
T Consensus       157 ~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l------~l~~n~i~-~i~~~~-~~~~l~~~~l~~n~i~~~----  223 (414)
T KOG0531|consen  157 GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEEL------DLGGNSIR-EIEGLD-LLKKLVLLSLLDNKISKL----  223 (414)
T ss_pred             CCccchhhhcccCCcchhhhhhh-hhhhhccchHHH------hccCCchh-cccchH-HHHHHHHhhcccccceec----
Confidence            55668889999999987543322 1 3567777777      36666543 233333 344555556666655321    


Q ss_pred             HHHhccCC--CccEEEEEecCCC
Q 041391          537 SESLEKFK--NLLKLKIAWGAGY  557 (704)
Q Consensus       537 ~~~L~~l~--~L~~L~Ls~n~l~  557 (704)
                       ..+..+.  +|+.+++.+|++.
T Consensus       224 -~~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  224 -EGLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             -cCcccchhHHHHHHhcccCccc
Confidence             1122222  2677777777743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.58  E-value=3e-06  Score=94.21  Aligned_cols=165  Identities=24%  Similarity=0.218  Sum_probs=109.2

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhh---ccchh-------------hHhccC------CcccceeeeeccCCCCCCchhh
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEV---QGSKF-------------LKELKN------MSALRLLSLQGVYGIREIPSSI  435 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~---~~~~l-------------p~~l~~------L~~Lr~L~Ls~n~~l~~lP~~l  435 (704)
                      +..++.||+|.|.++.+...+-+.-   ....+             -...+.      -..|...+.++| .+..+-.++
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~SL  183 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDESL  183 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHHH
Confidence            5678899999999997753221100   00000             000111      123556666765 466677778


Q ss_pred             hccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhhHHh
Q 041391          436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLGN  514 (704)
Q Consensus       436 ~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~  514 (704)
                      .-++.|+.|||++|+. ..+ ..+..|++|++|||++|.+ ..+|.- ...+ .|+.|      ++++|.+. .+..+. 
T Consensus       184 qll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc-~L~~L------~lrnN~l~-tL~gie-  251 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGC-KLQLL------NLRNNALT-TLRGIE-  251 (1096)
T ss_pred             HHHHHhhhhccchhhh-hhh-HHHHhcccccccccccchh-ccccccchhhh-hheee------eecccHHH-hhhhHH-
Confidence            8889999999999854 444 3788899999999999984 456642 2223 38888      57877754 455677 


Q ss_pred             CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391          515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      +|.+|+.|+++.|-+.+.-+  ...+..+..|+.|.|.+|++.
T Consensus       252 ~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCccc
Confidence            88899999999987654322  134666778889999988864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=2.7e-05  Score=78.48  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=18.5

Q ss_pred             cccCcEEeeecccCCC--cCCccccccCCCcEEEccCcc
Q 041391          438 LSNLRVLDLRCCYYLT--KLPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~--~lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      .++++.|||.+|....  ++-.-+.+|+.|++|+++.|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            4556666666653221  222223455566666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0001  Score=74.34  Aligned_cols=142  Identities=20%  Similarity=0.190  Sum_probs=95.4

Q ss_pred             chhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC
Q 041391          508 TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG  587 (704)
Q Consensus       508 ~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  587 (704)
                      ....++...+.++.|++.+|.++ ...++...+.++++|+.|+|+.|.+...+                      +.+|.
T Consensus        62 d~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I----------------------~~lp~  118 (418)
T KOG2982|consen   62 DVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDI----------------------KSLPL  118 (418)
T ss_pred             hHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCcc----------------------ccCcc
Confidence            34455556688999999999887 45677788999999999999999865422                      22331


Q ss_pred             cccccccceeEEEEEcCCC--CCCcccCCCC-CeeEEEEEcCCCCCc---CCCccCCCCCcCEEecCCCcccc-cccccc
Q 041391          588 TFGQKDRLLEKLDLHCFPL--ESLPNWLSGL-NLRKLYIRGGQLRSL---QGDTHKKYSTVKVLRLRYLNELN-VNWREL  660 (704)
Q Consensus       588 ~~~~lp~~L~~L~Ls~~~l--~~lP~~l~~l-~L~~L~Ls~n~l~~l---p~~~~~~f~~L~~L~L~~l~~L~-l~~~~l  660 (704)
                          +..+|+.|.|.|..+  ...-+.+..+ .++.|+++.|.+..+   ......+-+.+++|++..|.... .+.+.+
T Consensus       119 ----p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  119 ----PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             ----cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence                125899999987665  2222333334 778888888865332   22333445577777777776553 233444


Q ss_pred             cCcCCCccEEeeecCC
Q 041391          661 QALFPDLEYLEKFNCP  676 (704)
Q Consensus       661 ~~~~p~L~~L~i~~C~  676 (704)
                      ...||++..+.+..||
T Consensus       195 ~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGP  210 (418)
T ss_pred             HhhcccchheeeecCc
Confidence            5789999988888885

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.29  E-value=0.00011  Score=73.39  Aligned_cols=249  Identities=18%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCC----Cch-------hhhccccCcEEeee
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE----IPS-------SIANLSNLRVLDLR  447 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~----lP~-------~l~~L~~L~~LdLs  447 (704)
                      ..|..+..++|++|.+...     ....+...+.+-.+|+..+++.- .++.    +|+       .+-++++|+..+||
T Consensus        27 ~~~d~~~evdLSGNtigtE-----A~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS  100 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTE-----AMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLS  100 (388)
T ss_pred             HhhcceeEEeccCCcccHH-----HHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence            4477888899999966421     12345566777888999888873 3332    232       24567889999999


Q ss_pred             cccCCCcCCccc----cccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEE
Q 041391          448 CCYYLTKLPKGL----DSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL  522 (704)
Q Consensus       448 ~c~~l~~lP~~i----~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L  522 (704)
                      .|.+-...|..+    .+-+.|.||.+++|.+ +.+.. .|++  .|++|-        .|.      ... .-+.|+..
T Consensus       101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigk--al~~la--------~nK------Kaa-~kp~Le~v  162 (388)
T COG5238         101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGK--ALFHLA--------YNK------KAA-DKPKLEVV  162 (388)
T ss_pred             ccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHH--HHHHHH--------HHh------hhc-cCCCceEE
Confidence            887666666543    4557888999888863 22221 1221  233330        111      112 34566666


Q ss_pred             EEEeeCCCC-chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEE
Q 041391          523 SIYVNNNAI-PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDL  601 (704)
Q Consensus       523 ~L~~n~~~~-~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~L  601 (704)
                      .+..|++.. +.......+.....|+.+.+..|.+...         ....+..           ..+... .+|+.|+|
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe---------gv~~L~~-----------~gl~y~-~~LevLDl  221 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPE---------GVTMLAF-----------LGLFYS-HSLEVLDL  221 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc---------hhHHHHH-----------HHHHHh-Ccceeeec
Confidence            666666532 2222223344445677777776664321         0000000           001112 46777777


Q ss_pred             EcCCCCC---------CcccCCCCCeeEEEEEcCCCCCcC------CCccCCCCCcCEEecCCCcc-----ccccccccc
Q 041391          602 HCFPLES---------LPNWLSGLNLRKLYIRGGQLRSLQ------GDTHKKYSTVKVLRLRYLNE-----LNVNWRELQ  661 (704)
Q Consensus       602 s~~~l~~---------lP~~l~~l~L~~L~Ls~n~l~~lp------~~~~~~f~~L~~L~L~~l~~-----L~l~~~~l~  661 (704)
                      ..|.++.         +|.|-   .|+.|.+..|-++.-.      ...-..+|+|..|.+.+...     ++++.+.+.
T Consensus       222 qDNtft~~gS~~La~al~~W~---~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e  298 (388)
T COG5238         222 QDNTFTLEGSRYLADALCEWN---LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE  298 (388)
T ss_pred             cccchhhhhHHHHHHHhcccc---hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence            7665432         23332   4577777777652211      11122356666666655321     112233333


Q ss_pred             -CcCCCccEEeeecC
Q 041391          662 -ALFPDLEYLEKFNC  675 (704)
Q Consensus       662 -~~~p~L~~L~i~~C  675 (704)
                       +.+|-|..|.+.++
T Consensus       299 ~~~~p~L~~le~ngN  313 (388)
T COG5238         299 QDAVPLLVDLERNGN  313 (388)
T ss_pred             hcccHHHHHHHHccC
Confidence             66777777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00023  Score=82.85  Aligned_cols=133  Identities=27%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             cccceeeeeccCCCC-CCchhhhc-cccCcEEeeecccCC-CcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391          415 SALRLLSLQGVYGIR-EIPSSIAN-LSNLRVLDLRCCYYL-TKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV  491 (704)
Q Consensus       415 ~~Lr~L~Ls~n~~l~-~lP~~l~~-L~~L~~LdLs~c~~l-~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~  491 (704)
                      .+|++|+++|..... ..|..++. ||+|+.|.+++-... ..+-.-..++++|..||++++.+. .+ .++++|++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            456666666643321 22233332 566666666652111 111222345666777777766533 22 45667777777


Q ss_pred             ecccccccCCCCCCc--cchhhHHhCCCCCcEEEEEeeCCCCc---hhhHHHHhccCCCccEEEEEecCC
Q 041391          492 LKGFLVTDAKPNDKI--CTLEDLGNSLKELRKLSIYVNNNAIP---IEKLSESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       492 L~~~~~~~ls~n~l~--~~~~~l~~~L~~L~~L~L~~n~~~~~---~~~l~~~L~~l~~L~~L~Ls~n~l  556 (704)
                      |.      +.+-.+.  ..+.+++ +|++|+.||+|.......   +....+.-..+++|+.|+.++..+
T Consensus       200 L~------mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LS------MRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             Hh------ccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            63      2222222  2345667 777777777776554322   122333444567777777775553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.28  E-value=5.7e-06  Score=92.01  Aligned_cols=176  Identities=24%  Similarity=0.218  Sum_probs=98.9

Q ss_pred             chhhhccccCcEEeeecccCCCcCCcccccc-CCCcEEEccCccc----------ccccCccCCCCCCcceecccccccC
Q 041391          432 PSSIANLSNLRVLDLRCCYYLTKLPKGLDSL-KKLTYLDISECYL----------IEYMPKELSSLSELQVLKGFLVTDA  500 (704)
Q Consensus       432 P~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L-~~L~~L~Ls~n~~----------~~~lP~~i~~L~~L~~L~~~~~~~l  500 (704)
                      |-+|..+..|++|.|++|.... . .++..+ ..|++|.-.+ ..          .+.+..++ ....|.+.      +.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a------~f  171 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATA------SF  171 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhh------hc
Confidence            5567778888888888884332 1 222222 1344442211 10          11111110 01123333      46


Q ss_pred             CCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhh
Q 041391          501 KPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQ  580 (704)
Q Consensus       501 s~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~  580 (704)
                      ++|.+...=..+. -++.|+.|+++.|+++..     +.+..+++|++|+|++|.+..                      
T Consensus       172 syN~L~~mD~SLq-ll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~----------------------  223 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQ-LLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRH----------------------  223 (1096)
T ss_pred             chhhHHhHHHHHH-HHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhcc----------------------
Confidence            6666555445565 678888888888876521     467888888888888887432                      


Q ss_pred             cCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCC-ccCCCCCcCEEecCCCc
Q 041391          581 GKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGD-THKKYSTVKVLRLRYLN  651 (704)
Q Consensus       581 ~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~-~~~~f~~L~~L~L~~l~  651 (704)
                          +|. +......|+.|.|++|.++.+ ..+.++ +|+.|++++|-+...... ....+..|+.|+|.+++
T Consensus       224 ----vp~-l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  224 ----VPQ-LSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ----ccc-cchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence                221 111123688888888877666 345555 888888888876333221 11224456666666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.21  E-value=0.00047  Score=50.09  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=15.9

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC  449 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c  449 (704)
                      +|++|++++| .+..+|..+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4455555554 34445544555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.20  E-value=0.00036  Score=50.70  Aligned_cols=34  Identities=38%  Similarity=0.474  Sum_probs=15.1

Q ss_pred             cCcEEeeecccCCCcCCccccccCCCcEEEccCcc
Q 041391          440 NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       440 ~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      +|++|++++| .+..+|..+++|++|++|++++|.
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence            3444555544 333444444455555555555444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.16  E-value=0.00012  Score=85.20  Aligned_cols=86  Identities=29%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC--
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL--  455 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l--  455 (704)
                      -..+|.|+.|.+.+-.+.        ..++-.-..++++|+.||++++ .++.+ ..++.|++||+|.+++= ....-  
T Consensus       144 g~~LPsL~sL~i~~~~~~--------~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~  212 (699)
T KOG3665|consen  144 GTMLPSLRSLVISGRQFD--------NDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQD  212 (699)
T ss_pred             hhhCcccceEEecCceec--------chhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhh
Confidence            344566666666655332        1233444556666666666663 45555 33666666666666642 11111  


Q ss_pred             CccccccCCCcEEEccCcc
Q 041391          456 PKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       456 P~~i~~L~~L~~L~Ls~n~  474 (704)
                      -..+.+|++|++||+|...
T Consensus       213 l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  213 LIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHHHhcccCCCeeeccccc
Confidence            1234566666666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.99  E-value=0.00013  Score=65.61  Aligned_cols=99  Identities=19%  Similarity=0.267  Sum_probs=68.2

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc-cccCcEEeeecccCCCcCCcccccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN-LSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~-L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      +-.++|++|.+-++       ...+..+....+|...+|++| ..+.+|..|.. .+.+.+|+|++| .+..+|..+..+
T Consensus        29 ~h~ldLssc~lm~i-------~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam   99 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYI-------ADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAM   99 (177)
T ss_pred             hhhcccccchhhHH-------HHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhh
Confidence            44567777755422       234555667777888888887 56777776654 347888888875 667788888888


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCccee
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVL  492 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L  492 (704)
                      +.|+.|+++.|.+. ..|..|..|.+|-.|
T Consensus       100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen  100 PALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             HHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            88888888888743 556666666666666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.82  E-value=0.00013  Score=77.05  Aligned_cols=260  Identities=21%  Similarity=0.217  Sum_probs=127.8

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch--hhhccccCcEEeeecccCCCc-
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS--SIANLSNLRVLDLRCCYYLTK-  454 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~--~l~~L~~L~~LdLs~c~~l~~-  454 (704)
                      -.+++++..|.+.++...       ....+...-..+..|++|+|..|..++...-  -...+++|.+|++++|..+.. 
T Consensus       160 ~~~CpnIehL~l~gc~~i-------Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~  232 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKI-------TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN  232 (483)
T ss_pred             hhhCCchhhhhhhcceec-------cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC
Confidence            356677777777776411       1122333334677777887777655543321  123567778888887765443 


Q ss_pred             -CCccccccCCCcEEEccCcccccccCcc-C----CCCCCcceecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEe
Q 041391          455 -LPKGLDSLKKLTYLDISECYLIEYMPKE-L----SSLSELQVLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYV  526 (704)
Q Consensus       455 -lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i----~~L~~L~~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~  526 (704)
                       +-.-..+..+|+.+.+.||.-.   +.. +    +....+-.+      ++..+.....  +-.+...+..|+.|+.++
T Consensus       233 gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~l------nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~  303 (483)
T KOG4341|consen  233 GVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKL------NLQHCNQLTDEDLWLIACGCHALQVLCYSS  303 (483)
T ss_pred             cchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhcc------chhhhccccchHHHHHhhhhhHhhhhcccC
Confidence             1112234445566655555311   110 1    111112222      1222221111  123333567778888777


Q ss_pred             eCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391          527 NNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL  606 (704)
Q Consensus       527 n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l  606 (704)
                      +...+.. .+.+--.+..+|+.|.++.|...+..                       .+ ..+......|+.|++..+..
T Consensus       304 ~t~~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~-----------------------~f-t~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  304 CTDITDE-VLWALGQHCHNLQVLELSGCQQFSDR-----------------------GF-TMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             CCCCchH-HHHHHhcCCCceEEEeccccchhhhh-----------------------hh-hhhhcCChhhhhhcccccce
Confidence            6643221 11122345678888888777632110                       00 00111113677777776553


Q ss_pred             CCCcccCCCC-----CeeEEEEEcCCCCCcC-----CCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCC
Q 041391          607 ESLPNWLSGL-----NLRKLYIRGGQLRSLQ-----GDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP  676 (704)
Q Consensus       607 ~~lP~~l~~l-----~L~~L~Ls~n~l~~lp-----~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~  676 (704)
                      ..-- .+..+     .|+.|.|++|....-.     .....+...|..|.|.+|+.+.-.--......++|+.+++.+|.
T Consensus       359 ~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  359 ITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            2211 12221     7777777777652221     12233456677778888776641111111456788888888775


Q ss_pred             CCC
Q 041391          677 MIS  679 (704)
Q Consensus       677 ~L~  679 (704)
                      ..+
T Consensus       438 ~vt  440 (483)
T KOG4341|consen  438 DVT  440 (483)
T ss_pred             hhh
Confidence            543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.29  E-value=0.00029  Score=74.36  Aligned_cols=259  Identities=22%  Similarity=0.190  Sum_probs=147.4

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhh-hccccCcEEeeecccCCCcCC--cc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSI-ANLSNLRVLDLRCCYYLTKLP--KG  458 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l-~~L~~L~~LdLs~c~~l~~lP--~~  458 (704)
                      .|+.|.+.++.-.       ....+-....++++++.|.+.+|..++.-. .++ ..+++|++|+|..|..+...-  .-
T Consensus       139 ~lk~LSlrG~r~v-------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  139 FLKELSLRGCRAV-------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             ccccccccccccC-------CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            4677888877422       112333445688999999999997655321 112 357899999999987665321  12


Q ss_pred             ccccCCCcEEEccCcccccc--cCccCCCCCCcceecccccccCCCCCCcc--chhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391          459 LDSLKKLTYLDISECYLIEY--MPKELSSLSELQVLKGFLVTDAKPNDKIC--TLEDLGNSLKELRKLSIYVNNNAIPIE  534 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~--lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~~~~l~~~L~~L~~L~L~~n~~~~~~~  534 (704)
                      ...+++|.+|++++|.-...  +-.-......|+.+.      ..++.-..  .+..+......+.++++..|..... .
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~------~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD-~  284 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLS------LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD-E  284 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhh------hcccccccHHHHHHHhccChHhhccchhhhccccc-h
Confidence            34578999999999964322  111123444455552      22221110  1112222334455666666644322 2


Q ss_pred             hHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC-CCCc-cc
Q 041391          535 KLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL-ESLP-NW  612 (704)
Q Consensus       535 ~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l-~~lP-~~  612 (704)
                      .+...-..+..|+.|..+++....+.           .+             ..+..-..+|+.|-+++|+- +..- ..
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~-----------~l-------------~aLg~~~~~L~~l~l~~c~~fsd~~ft~  340 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDE-----------VL-------------WALGQHCHNLQVLELSGCQQFSDRGFTM  340 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchH-----------HH-------------HHHhcCCCceEEEeccccchhhhhhhhh
Confidence            22233445678888888877632110           00             01111124899999998762 2211 11


Q ss_pred             CCCC--CeeEEEEEcCCCCCcC--CCccCCCCCcCEEecCCCccccccc--c---cccCcCCCccEEeeecCCCCCC
Q 041391          613 LSGL--NLRKLYIRGGQLRSLQ--GDTHKKYSTVKVLRLRYLNELNVNW--R---ELQALFPDLEYLEKFNCPMISF  680 (704)
Q Consensus       613 l~~l--~L~~L~Ls~n~l~~lp--~~~~~~f~~L~~L~L~~l~~L~l~~--~---~l~~~~p~L~~L~i~~C~~L~~  680 (704)
                      +..-  .|+.|++..|......  .......+.|+.|.|++|..+. ..  .   .....+..|..|.+.+||.+++
T Consensus       341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it-D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT-DEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh-hhhhhhhhhccccccccceeeecCCCCchH
Confidence            1111  8999999998763221  1234568999999999887665 22  1   1114567899999999987554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.10  E-value=0.002  Score=64.52  Aligned_cols=195  Identities=18%  Similarity=0.153  Sum_probs=97.8

Q ss_pred             HhccCCcccceeeeeccCCCCCCchh----hhccccCcEEeeecccCCCc----CCccccccCCCcEEEccCcccccccC
Q 041391          409 KELKNMSALRLLSLQGVYGIREIPSS----IANLSNLRVLDLRCCYYLTK----LPKGLDSLKKLTYLDISECYLIEYMP  480 (704)
Q Consensus       409 ~~l~~L~~Lr~L~Ls~n~~l~~lP~~----l~~L~~L~~LdLs~c~~l~~----lP~~i~~L~~L~~L~Ls~n~~~~~lP  480 (704)
                      ..+..+..+..++||+|+.-++-..+    |.+-.+|++.+++.- .++.    +|..+.                 .+-
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~-----------------~Ll   85 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV-----------------MLL   85 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH-----------------HHH
Confidence            44455777888888887644433333    344566776666652 3322    221110                 011


Q ss_pred             ccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEEEeeCCCCchh-hHH---------HHhccCCCc
Q 041391          481 KELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSIYVNNNAIPIE-KLS---------ESLEKFKNL  546 (704)
Q Consensus       481 ~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L~~n~~~~~~~-~l~---------~~L~~l~~L  546 (704)
                      ..+-+++.|+..      +++.|.+....+    ++.++-+.|.+|.+++|.+..... .+.         .-..+.+.|
T Consensus        86 ~aLlkcp~l~~v------~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L  159 (388)
T COG5238          86 KALLKCPRLQKV------DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL  159 (388)
T ss_pred             HHHhcCCcceee------eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence            123344445544      345554433321    222266788888888887542111 111         123345778


Q ss_pred             cEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC--------CC-C
Q 041391          547 LKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS--------GL-N  617 (704)
Q Consensus       547 ~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~--------~l-~  617 (704)
                      ++..+..|++..         .....+             ......+.+|+.+.+..|.+.  |..+.        .. +
T Consensus       160 e~vicgrNRlen---------gs~~~~-------------a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~  215 (388)
T COG5238         160 EVVICGRNRLEN---------GSKELS-------------AALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHS  215 (388)
T ss_pred             eEEEeccchhcc---------CcHHHH-------------HHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCc
Confidence            888777776321         000000             001122357888888887763  22221        12 8


Q ss_pred             eeEEEEEcCCCCCcCCC----ccCCCCCcCEEecCCCc
Q 041391          618 LRKLYIRGGQLRSLQGD----THKKYSTVKVLRLRYLN  651 (704)
Q Consensus       618 L~~L~Ls~n~l~~lp~~----~~~~f~~L~~L~L~~l~  651 (704)
                      |+.|+|..|-++.....    .....+.|+.|.+.+|-
T Consensus       216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             ceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            88888888877432211    11223557777777763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.93  E-value=0.0019  Score=58.35  Aligned_cols=84  Identities=25%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             eecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCc
Q 041391          363 LVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLR  442 (704)
Q Consensus       363 l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~  442 (704)
                      +....+.+..+++.+-.+++.+++|++.+|.++          ++|..+..++.||.|+++.| .+...|..|..|.+|-
T Consensus        58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis----------dvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS----------DVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD  126 (177)
T ss_pred             EecccchhhhCCHHHhhccchhhhhhcchhhhh----------hchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence            333444455554555555556666666666443          45555666666666666665 3445555555566666


Q ss_pred             EEeeecccCCCcCCcc
Q 041391          443 VLDLRCCYYLTKLPKG  458 (704)
Q Consensus       443 ~LdLs~c~~l~~lP~~  458 (704)
                      .|+.-+| -..++|-.
T Consensus       127 ~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  127 MLDSPEN-ARAEIDVD  141 (177)
T ss_pred             HhcCCCC-ccccCcHH
Confidence            6665554 33444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.88  E-value=0.002  Score=72.39  Aligned_cols=134  Identities=26%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             CcccceeeeeccCCCCC--CchhhhccccCcEEeeecc-cCCCcCC----ccccccCCCcEEEccCccccc-ccCccCC-
Q 041391          414 MSALRLLSLQGVYGIRE--IPSSIANLSNLRVLDLRCC-YYLTKLP----KGLDSLKKLTYLDISECYLIE-YMPKELS-  484 (704)
Q Consensus       414 L~~Lr~L~Ls~n~~l~~--lP~~l~~L~~L~~LdLs~c-~~l~~lP----~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~-  484 (704)
                      ++.|+.|.+.+|..+..  +-......++|+.|++++| ......+    .....+.+|+.|+++++.... ..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666666655544  2233455666777776652 1111111    122344667777777665211 1111122 


Q ss_pred             CCCCcceecccccccCCCCC-Cc-cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEec
Q 041391          485 SLSELQVLKGFLVTDAKPND-KI-CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG  554 (704)
Q Consensus       485 ~L~~L~~L~~~~~~~ls~n~-l~-~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n  554 (704)
                      .+++|++|.      +..+. ++ ..+..+...+++|+.|++++|..... ..+.....++++|+.|.+...
T Consensus       267 ~c~~L~~L~------l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLS------LSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEc------cCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhc
Confidence            255677763      33332 11 12344544677888888888775422 222333555677777665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.86  E-value=0.0059  Score=58.86  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=33.0

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc-ccCCCcEEEccCccc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD-SLKKLTYLDISECYL  475 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~-~L~~L~~L~Ls~n~~  475 (704)
                      ....+||++| .+..++. +..+..|.+|.|++|.. ..+...+. .+++|..|.+.+|.+
T Consensus        43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccceeccccc-chhhccc-CCCccccceEEecCCcc-eeeccchhhhccccceEEecCcch
Confidence            4456677775 3455544 66667777777776633 33333333 345677777776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.63  E-value=0.0061  Score=61.10  Aligned_cols=62  Identities=23%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecc--cCCCcCCccccccCCCcEEEccCccc
Q 041391          412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC--YYLTKLPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c--~~l~~lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      -.+..|..|++.++ .++.+-. +-.|++|+.|.++.|  .....++.-..++++|++|++++|++
T Consensus        40 d~~~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             ccccchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            34455555555554 2322222 344667777777766  44445554455556777777776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.39  E-value=0.0087  Score=59.99  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=44.5

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeecc--CCCCCCchhhhccccCcEEeeecccCC--Cc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGV--YGIREIPSSIANLSNLRVLDLRCCYYL--TK  454 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n--~~l~~lP~~l~~L~~L~~LdLs~c~~l--~~  454 (704)
                      ..+..|..|.+.+..++..           ..+-.|++|++|.++.|  .....++....++++|++|++++|.+.  ..
T Consensus        40 d~~~~le~ls~~n~gltt~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-----------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             ccccchhhhhhhccceeec-----------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence            3445555555555554421           23445666777777666  334444444555567777777766322  11


Q ss_pred             CCccccccCCCcEEEccCccc
Q 041391          455 LPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       455 lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      + ..+..+.+|..|++.+|..
T Consensus       109 l-~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  109 L-RPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             c-chhhhhcchhhhhcccCCc
Confidence            1 1234455566666666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.40  E-value=0.046  Score=52.91  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             ccccccceeEEEEEcCCCCCCcccCCCC--CeeEEEEEcCCCCCcCC-CccCCCCCcCEEecCCCcccccc-ccc-ccCc
Q 041391          589 FGQKDRLLEKLDLHCFPLESLPNWLSGL--NLRKLYIRGGQLRSLQG-DTHKKYSTVKVLRLRYLNELNVN-WRE-LQAL  663 (704)
Q Consensus       589 ~~~lp~~L~~L~Ls~~~l~~lP~~l~~l--~L~~L~Ls~n~l~~lp~-~~~~~f~~L~~L~L~~l~~L~l~-~~~-l~~~  663 (704)
                      ++.+ +.|.+|.|.+|.+..+...+..+  +|..|.|.+|.+..+.. .....+|.|+.|.+-+.+.-... +.. +.-.
T Consensus        60 lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            4455 48899999998888887666665  79999999988866543 23455788888888776543311 111 1146


Q ss_pred             CCCccEEeeecC
Q 041391          664 FPDLEYLEKFNC  675 (704)
Q Consensus       664 ~p~L~~L~i~~C  675 (704)
                      +|+|+.|+..+-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            788888887654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=0.0046  Score=62.27  Aligned_cols=99  Identities=24%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC--cc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP--KG  458 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP--~~  458 (704)
                      +.+.+.|++.+|.++.+           ....+|+.|++|.|+-| .+..+.. +..+++|+.|.|+.| .+..+.  ..
T Consensus        18 l~~vkKLNcwg~~L~DI-----------sic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN-~I~sldEL~Y   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-----------SICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKN-CIESLDELEY   83 (388)
T ss_pred             HHHhhhhcccCCCccHH-----------HHHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhc-ccccHHHHHH
Confidence            34455666667765422           22456777777777776 4555554 667777777777776 333332  23


Q ss_pred             ccccCCCcEEEccCcccccccCcc-----CCCCCCcceec
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKE-----LSSLSELQVLK  493 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~-----i~~L~~L~~L~  493 (704)
                      +.+|++|+.|.|..|...+.-+..     +..|++|+.|.
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            566777777777777655544432     44567777774

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.0067  Score=61.12  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             CCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc--cCCCCCCcc
Q 041391          413 NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK--ELSSLSELQ  490 (704)
Q Consensus       413 ~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~  490 (704)
                      .+.+.+.|++.+| .+..+.- +.+++.|++|.|+-| .+..+ ..+..+++|+.|+|..|.+. .+-+  -+.++++|+
T Consensus        17 dl~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCC-CccHHHH-HHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            4667788888887 4555533 567899999999987 44555 34678888999999888642 2221  145666666


Q ss_pred             eec
Q 041391          491 VLK  493 (704)
Q Consensus       491 ~L~  493 (704)
                      +|.
T Consensus        92 ~LW   94 (388)
T KOG2123|consen   92 TLW   94 (388)
T ss_pred             hHh
Confidence            663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.50  E-value=0.11  Score=31.52  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=8.2

Q ss_pred             CcEEEccCcccccccCccC
Q 041391          465 LTYLDISECYLIEYMPKEL  483 (704)
Q Consensus       465 L~~L~Ls~n~~~~~lP~~i  483 (704)
                      |++|++++|.+. .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555433 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.20  E-value=0.04  Score=61.89  Aligned_cols=115  Identities=26%  Similarity=0.257  Sum_probs=76.1

Q ss_pred             hccccCcEEeeecccCCCc--CCccccccCCCcEEEccCc-ccccccC----ccCCCCCCcceecccccccCCCCC-Cc-
Q 041391          436 ANLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYLDISEC-YLIEYMP----KELSSLSELQVLKGFLVTDAKPND-KI-  506 (704)
Q Consensus       436 ~~L~~L~~LdLs~c~~l~~--lP~~i~~L~~L~~L~Ls~n-~~~~~lP----~~i~~L~~L~~L~~~~~~~ls~n~-l~-  506 (704)
                      ...++|+.|.+.+|..+..  +-......++|+.|++++| ......+    .....+.+|+.|.      ++.+. ++ 
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~------l~~~~~isd  258 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLD------LSGCGLVTD  258 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccc------hhhhhccCc
Confidence            3478999999999876665  3355678899999999984 2222222    1233456777773      55444 22 


Q ss_pred             cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391          507 CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       507 ~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      ..+..+...+++|+.|.+..|... ....+......++.|++|+|++|...
T Consensus       259 ~~l~~l~~~c~~L~~L~l~~c~~l-t~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  259 IGLSALASRCPNLETLSLSNCSNL-TDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhHHHHHhhCCCcceEccCCCCcc-chhHHHHHHHhcCcccEEeeecCccc
Confidence            224555545789999998877631 12344455677889999999988743

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.66  E-value=0.098  Score=31.69  Aligned_cols=18  Identities=39%  Similarity=0.558  Sum_probs=8.2

Q ss_pred             CcEEeeecccCCCcCCccc
Q 041391          441 LRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       441 L~~LdLs~c~~l~~lP~~i  459 (704)
                      |++|||++| .+..+|.+|
T Consensus         2 L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSS-EESEEGTTT
T ss_pred             ccEEECCCC-cCEeCChhh
Confidence            455555554 222444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.87  E-value=0.19  Score=28.37  Aligned_cols=17  Identities=29%  Similarity=0.516  Sum_probs=10.8

Q ss_pred             CCccEEeeecCCCCCCCC
Q 041391          665 PDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       665 p~L~~L~i~~C~~L~~lP  682 (704)
                      |+|+.|++++|. |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            578889998885 88776

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.01  E-value=0.13  Score=49.81  Aligned_cols=63  Identities=19%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccc--cccCcCCCccEEeeecCCCCCC
Q 041391          617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWR--ELQALFPDLEYLEKFNCPMISF  680 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~--~l~~~~p~L~~L~i~~C~~L~~  680 (704)
                      .++.++-+++.+...--.-...++.++.|.+.+|..++ .|.  .+.+..|+|+.|+|++||.+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-D~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-DWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-hHHHHHhcccccchheeeccCCCeech
Confidence            44455555444422222223334445555555555554 222  1113445555555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.26  E-value=1.7  Score=38.87  Aligned_cols=84  Identities=13%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCc
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTK  454 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~  454 (704)
                      .+|.++.+|+.+.+... +..+.         ...|..+.+|+.+.+.++  +..++. .+.++.+|+.+.+..  ....
T Consensus         6 ~~F~~~~~l~~i~~~~~-~~~I~---------~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~   71 (129)
T PF13306_consen    6 NAFYNCSNLESITFPNT-IKKIG---------ENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKS   71 (129)
T ss_dssp             TTTTT-TT--EEEETST---EE----------TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-E
T ss_pred             HHHhCCCCCCEEEECCC-eeEeC---------hhhccccccccccccccc--ccccceeeeecccccccccccc--cccc
Confidence            45777778888887643 32211         234667777888887763  444443 356666777777754  2333


Q ss_pred             CCc-cccccCCCcEEEccCc
Q 041391          455 LPK-GLDSLKKLTYLDISEC  473 (704)
Q Consensus       455 lP~-~i~~L~~L~~L~Ls~n  473 (704)
                      ++. .+..+++|+.+.+..+
T Consensus        72 i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccccccccccCcc
Confidence            333 3455777777777543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.46  E-value=0.043  Score=54.12  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..++..++||++.|++-          .+-..|+-++.|..|+++.| -+..+|..++.+..+..+++..| ....+|.
T Consensus        38 i~~~kr~tvld~~s~r~v----------n~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~  105 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV----------NLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPK  105 (326)
T ss_pred             hhccceeeeehhhhhHHH----------hhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCc
Confidence            455677889999988653          23355677888889999986 58889998999999999988875 7788999


Q ss_pred             cccccCCCcEEEccCcccc
Q 041391          458 GLDSLKKLTYLDISECYLI  476 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~  476 (704)
                      ++++++.++++++-++.+.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            9999999999999887643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.80  E-value=0.47  Score=46.14  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=47.0

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhh-ccccCcEEeeecccCCCcC-Cccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIA-NLSNLRVLDLRCCYYLTKL-PKGL  459 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~-~L~~L~~LdLs~c~~l~~l-P~~i  459 (704)
                      .++.+|-+++.+.+.         -...+.+++.++.|.+.+|......- +-++ -.++|+.|+|++|..+++- -..+
T Consensus       102 ~IeaVDAsds~I~~e---------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE---------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             eEEEEecCCchHHHH---------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence            356677777755421         12456677777777787775543221 1122 2467888888888766543 1235


Q ss_pred             cccCCCcEEEccC
Q 041391          460 DSLKKLTYLDISE  472 (704)
Q Consensus       460 ~~L~~L~~L~Ls~  472 (704)
                      .++++|+.|.+.+
T Consensus       173 ~~lknLr~L~l~~  185 (221)
T KOG3864|consen  173 LKLKNLRRLHLYD  185 (221)
T ss_pred             HHhhhhHHHHhcC
Confidence            5666677666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	704
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.5 bits (208), Expect = 7e-17
 Identities = 99/656 (15%), Positives = 206/656 (31%), Gaps = 164/656 (25%)

Query: 12  DSNSSKIQLLIKTIT-----DFHADLSISSIQDYINSQKSGSDSSDNKGDSKKKDGRNRH 66
           D  + + Q   K I       F  +     +QD   S  S     +       KD  +  
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAVSGT 64

Query: 67  QPLLGKLYRRLPSEITTGKKKSSSKEEKEEKSKSKREVNAATN-------SKSNNDLKQK 119
             L   L                     +++   ++ V            S    + +Q 
Sbjct: 65  LRLFWTL-------------------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 120 DNLVKKYLDKIKKDSTENREKLGELIKDHIRRFEGI------LEKLSS----------GS 163
             + + Y+++  +   +N+       K ++ R +        L +L            GS
Sbjct: 106 SMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 164 IQS----EQCLDESREEVRNFEDKVPLVN--KYSSTESDGLKQSEIVELMEMFINFREKF 217
            ++    + CL    +     + K+  +N    +S E+      +++  ++     R   
Sbjct: 162 GKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 218 GFDEFMEMIINFRNKFRNLKNESKF--CL---------WCFTVFPNNAVVRKRLVENWLI 266
             +  +  I + + + R L     +  CL           +  F  +    K L+     
Sbjct: 220 SSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILL----T 271

Query: 267 TEDKNRAE--ENREEKNKAVEDD----TQEKNIDDILKELEREGFIVPVRKKRRKDVNNR 320
           T  K   +        + +++      T ++    +LK L+     +P            
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-------- 323

Query: 321 FKMDPLARLAVINSRKPEDL--WCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWF 378
              +P   L++I     + L  W  W  +   +  +    +++ L       P    K F
Sbjct: 324 -TTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMF 375

Query: 379 SNL----KKVK----VLHLGRWKNSAKHFVEVQGSKFLKELKNMSAL------RLLSLQG 424
             L            +L L  W +  K  V V     + +L   S +        +S+  
Sbjct: 376 DRLSVFPPSAHIPTILLSL-IWFDVIKSDVMV----VVNKLHKYSLVEKQPKESTISIPS 430

Query: 425 VYGIREIPSSIANLSNL--RVLDLRCCYYLTKLPKGLDSLKKLT-YLDISECYLIEYMPK 481
           +Y   E+   + N   L   ++D    Y    +PK  DS   +  YLD    Y   ++  
Sbjct: 431 IY--LELKVKLENEYALHRSIVD---HY---NIPKTFDSDDLIPPYLD---QYFYSHIGH 479

Query: 482 ELSSLSELQVLKGF--LVTD-----AK---PNDKICTLEDLGNSLKELRKLSIYVNNNAI 531
            L ++   + +  F  +  D      K    +        + N+L++L+    Y+ +N  
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 532 PIEKLSESLEKF-----KNLLKLKIAWGAGYSKCRN--QEGNNEHNKKQEDEAETQ 580
             E+L  ++  F     +NL+          SK  +  +      ++   +EA  Q
Sbjct: 540 KYERLVNAILDFLPKIEENLIC---------SKYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 4e-11
 Identities = 82/561 (14%), Positives = 166/561 (29%), Gaps = 168/561 (29%)

Query: 205 ELMEMFI-NFREKFGF---DEFMEMIINFRN-----KFRNLKNESKFCLWCFTVFPNNAV 255
           +++ +F   F + F      +  + I++          ++  + +    W         V
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 256 VRKRLVE-------NWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVP 308
             ++ VE        +L+     + E+ +      +  + +++  +D             
Sbjct: 80  --QKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYND-----------NQ 124

Query: 309 VRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGS-TQLLTVSALVNVS 367
           V  K   +V+ R +     R A++  R P     K   ++G+  GS    + +   ++  
Sbjct: 125 VFAKY--NVS-RLQPYLKLRQALLELR-PA----KNVLIDGV-LGSGKTWVALDVCLSYK 175

Query: 368 -EQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQ-------GSKFLKELKNMSALRL 419
            +   DF+  W         L+L    NS +  +E+           +     + S ++L
Sbjct: 176 VQCKMDFKIFW---------LNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 420 LSLQGVYGIREI------PSS---IANLSNLRVL---DLRCCYYLTKLPKGL-DSLKKLT 466
                   +R +       +    + N+ N +     +L C   LT   K + D L   T
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 467 YLDISECYLIEYMPKELSSLSELQVLKGFL-VTDAKPND---KICTLEDL-----GNSLK 517
              IS       +     +L+  +V    L   D +P D   ++ T           S++
Sbjct: 286 TTHIS-------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLK------------------------LKIAW 553
           +         +  +  +KL+  +E   N+L+                        L + W
Sbjct: 339 DGLATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 554 GAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL----DGTFGQKDRLLEKLDLH------- 602
                       N  H        E Q K             K +L  +  LH       
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 603 ----CFPLESL-PNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYL------N 651
                F  + L P +L        Y                YS        ++       
Sbjct: 454 NIPKTFDSDDLIPPYLDQ------YF---------------YS--------HIGHHLKNI 484

Query: 652 ELNVNWRELQALFPDLEYLEK 672
           E        + +F D  +LE+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ 505

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 20/84 (23%), Positives = 37/84 (44%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYL 468
             + ++  L  L L+G   +R  P      + L+ L L+ C  L  LP  +  L +L  L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 469 DISECYLIEYMPKELSSLSELQVL 492
           D+  C  +  +P  ++ L    ++
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 61/248 (24%)

Query: 388 HLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLS--NLRVLD 445
            L +W+    +  +           N +  ++ +  G   ++     + + +      L+
Sbjct: 31  VLSQWQRH--YNADRNRWHSAWRQANSNNPQIETRTG-RALKATADLLEDATQPGRVALE 87

Query: 446 LRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDK 505
           LR    L + P     L  L ++ I    L+E +P  +   + L+ L          N  
Sbjct: 88  LRSVP-LPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETL------TLARN-P 138

Query: 506 ICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQE 564
           +  L   + + L  LR+LSI        + +L E L       +             N  
Sbjct: 139 LRALPASIAS-LNRLRELSIRACPE---LTELPEPLASTDASGEH--------QGLVN-- 184

Query: 565 GNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYI 623
                                          L+ L L    + SLP  ++ L NL+ L I
Sbjct: 185 -------------------------------LQSLRLEWTGIRSLPASIANLQNLKSLKI 213

Query: 624 RGGQLRSL 631
           R   L +L
Sbjct: 214 RNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 52/289 (17%), Positives = 83/289 (28%), Gaps = 107/289 (37%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYL 468
            +   +S L+ +++    G+ E+P ++   + L  L L     L  LP  + SL +L  L
Sbjct: 98  DQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLREL 155

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN 528
            I  C  +  +P+ L+S       +G                     L  L+ L +    
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQG---------------------LVNLQSLRLEWTG 194

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588
               I  L  S+   +NL                                          
Sbjct: 195 ----IRSLPASIANLQNL------------------------------------------ 208

Query: 589 FGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRG-----------GQLRSLQGDTH 636
                   + L +   PL +L   +  L  L +L +RG           G    L     
Sbjct: 209 --------KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL----- 255

Query: 637 KKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKF---NCPMISFFP 682
                 K L L+  + L      L      L  LEK     C  +S  P
Sbjct: 256 ------KRLILKDCSNL----LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 55/237 (23%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL--------- 459
             ++  + L  L+L     +R +P+SIA+L+ LR L +R C  LT+LP+ L         
Sbjct: 121 DTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKE 518
             L  L  L +    +   +P  +++L  L+ L        + +  +  L   + + L +
Sbjct: 180 QGLVNLQSLRLEWTGIRS-LPASIANLQNLKSL------KIRNS-PLSALGPAIHH-LPK 230

Query: 519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAE 578
           L +L +        +            L +L +                + +        
Sbjct: 231 LEELDLRGCTA---LRNYPPIFGGRAPLKRLIL---------------KDCSNLLT---- 268

Query: 579 TQGKGGLDGTFGQKDRL--LEKLDL-HCFPLESLPNWLSGL-NLRKLYIRGGQLRSL 631
                 L     +   L  LEKLDL  C  L  LP+ ++ L     + +       L
Sbjct: 269 ------LPLDIHR---LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYL 468
                 + L+ L L+    +  +P  I  L+ L  LDLR C  L++LP  +  L     +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 469 DISECYLIEYMPKELSSL 486
            +      +       + 
Sbjct: 307 LVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 52/246 (21%)

Query: 434 SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLK 493
              + S    L  +    L      L   ++    D +  +         ++ +  Q+  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQIE- 61

Query: 494 GFLVTDAKPNDKICTLEDLGNSLKELRKL---SIYVNNNAIPIEKLSESLEKFKNLLKLK 550
                          L+   + L++  +    ++ + +   P+ +  +   +  +L  + 
Sbjct: 62  ---------TRTGRALKATADLLEDATQPGRVALELRSV--PLPQFPDQAFRLSHLQHMT 110

Query: 551 IAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL--LEKLDLHCFPLES 608
           I                +     E          L  T  Q      LE L L   PL +
Sbjct: 111 I----------------DAAGLME----------LPDTMQQ---FAGLETLTLARNPLRA 141

Query: 609 LPNWLSGL-NLRKLYIRGG-QLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPD 666
           LP  ++ L  LR+L IR   +L  L        ++ +   L  L  L + W  +++L   
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 667 LEYLEK 672
           +  L+ 
Sbjct: 202 IANLQN 207

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 41/319 (12%), Positives = 89/319 (27%), Gaps = 70/319 (21%)

Query: 347 LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSK 406
           ++   + S +   +  L N          K    L K+++++     +            
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFIS----KAIQRLTKLQIIYFAN--SP----------- 459

Query: 407 FLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLT 466
                         +            S +NL +L  ++L  C  +T+LP  L  L +L 
Sbjct: 460 -FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 467 YLDISECYLIEY---------MPKELSSLSELQVLKGFLVTDAKPND--KICTLEDLGNS 515
            L+I+    I           +  +  +  ++Q+           N+  +      L   
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF------YMGYNNLEEFPASASLQK- 571

Query: 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575
           + +L  L    N     +  L         L  LK+                 +N+ +E 
Sbjct: 572 MVKLGLLDCVHNK----VRHLEA-FGTNVKLTDLKLD----------------YNQIEE- 609

Query: 576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSG---LNLRKLYIRGGQLRSLQ 632
                    +   F      +E L      L+ +PN  +      +  +     ++ S  
Sbjct: 610 ---------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 633 GDTHKKYSTVKVLRLRYLN 651
            +        K +    + 
Sbjct: 661 RNISCSMDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 23/276 (8%)

Query: 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK--GLDSLKKLTY 467
           +L N   +  LSL G      +P +I  L+ L+VL     +  T   +  G + L     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFG-THSETVSGRLFGDEELTPDMS 376

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
            +      + Y    L     L +    L      N ++  ++    S   L+   I   
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSD-LLQDAINRNPEMKPIKKD--SRISLKDTQIGNL 433

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
            N   I  +S+++++   L  +        +       N   + +  +    +     + 
Sbjct: 434 TNR--ITFISKAIQRLTKLQIIYF------ANSPFTYDNIAVDWEDANSDYAKQYENEEL 485

Query: 588 TFGQKDRLLEKLDL-HCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
           ++    + L  ++L +C  +  LP++L  L  L+ L I   +  S               
Sbjct: 486 SWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544

Query: 646 -RLRYLNELNVNWRELQAL-----FPDLEYLEKFNC 675
                +    + +  L+          +  L   +C
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 38/277 (13%), Positives = 73/277 (26%), Gaps = 54/277 (19%)

Query: 378 FSNLKKVKVLHLGRWK-------------------NSAKHFVEVQGSKFLKELKNMSALR 418
              L ++KVL  G                                   FL   + ++   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 419 LLSLQGVYGIREIPSSIANLSNLRVLDLRCCY-YLTKLPKGLDSLKKLTYLDISECYLIE 477
           LL           P    +  +L+   +      +T + K +  L KL  +  +      
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS---- 458

Query: 478 YMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS 537
                    +   +   +   ++    +    E   ++LK+L  + +Y   N   + +L 
Sbjct: 459 -------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLP 508

Query: 538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE 597
           + L     L  L IA                 N+             L          ++
Sbjct: 509 DFLYDLPELQSLNIA----------------CNRGISAAQLKADWTRLADDEDTG-PKIQ 551

Query: 598 KLDLHCFPLESLP--NWLSGL-NLRKLYIRGGQLRSL 631
              +    LE  P    L  +  L  L     ++R L
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 19/152 (12%)

Query: 411 LKNMSALRLLSLQG-------VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL--DS 461
               S +  + L            ++    +  N   L  +DLR    LT L       +
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATT 751

Query: 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKELR 520
           L  L+ +D+S        P +  + S+L+        DA+ N  +      +      L 
Sbjct: 752 LPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLI 809

Query: 521 KLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA 552
           +L I  N+    I K+ E L     L  L IA
Sbjct: 810 QLQIGSND----IRKVDEKL--TPQLYILDIA 835

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 34/284 (11%), Positives = 70/284 (24%), Gaps = 50/284 (17%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLS--LQGVYGIREIPSSI 435
            +   +V+ L      N       +      K +  M ++      +             
Sbjct: 615 CAFTDQVEGLGFSH--N---KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 436 ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYL-------IEYMPKELSSLS 487
               N   + L     + K P     +   ++ + +S   +       ++       +  
Sbjct: 670 YKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 488 ELQVLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKN 545
            L  +      D + N K+ +L  +    +L  L  + +  N                  
Sbjct: 729 LLTTI------DLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC----FSSFPTQPLNSSQ 777

Query: 546 LLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP 605
           L    I         R+ EGN                            L  +L +    
Sbjct: 778 LKAFGI------RHQRDAEGNRIL-------------RQWPTGITTCPSL-IQLQIGSND 817

Query: 606 LESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649
           +  +   L+   L  L I      S+   +   Y    +  L Y
Sbjct: 818 IRKVDEKLTP-QLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 45/224 (20%)

Query: 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS 415
           + ++ + L     +  D          K+++ ++G   N   +  E   S  L+++  + 
Sbjct: 526 RGISAAQLKADWTRLADD----EDTGPKIQIFYMGY--N---NLEEFPASASLQKMVKLG 576

Query: 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISECY 474
            L  +  +    +R + +       L  L L     + ++P+       ++  L  S   
Sbjct: 577 LLDCVHNK----VRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK 630

Query: 475 LIEYMPK--ELSSLSELQVL------------KGFLVTDAKPNDKICTLEDLGN------ 514
           L +Y+P      S+  +  +                  D        T+  L        
Sbjct: 631 L-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV-TLSYNEIQKF 688

Query: 515 ------SLKELRKLSIYVNN-NAIPIEKLSESLEKFKNLLKLKI 551
                 +   +  + +  N   +IP   L      +KN   L  
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 29/240 (12%), Positives = 72/240 (30%), Gaps = 36/240 (15%)

Query: 444 LDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN 503
            +     +  +    LD+  ++T L ++       +P  +  L+EL+VL          +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVL------SFGTH 357

Query: 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ 563
            +  +    G+            +   +  +K+    ++  NL  L             Q
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL------------LQ 405

Query: 564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLY 622
           +  N + + +  + ++           +      ++      +  +   +  L  L+ +Y
Sbjct: 406 DAINRNPEMKPIKKDS-----------RISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 623 IRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682
                               +     Y  +          L  DL  +E +NCP ++  P
Sbjct: 455 FANSPFTYDNIAVDW-----EDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLP 508

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           L  ++    ++ L++  ++      + I+ LSNL  L +      +     L  L  LT 
Sbjct: 59  LTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           LDIS     + +  ++++L ++  +      D   N  I  +  L   L EL+ L+I  +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSI------DLSYNGAITDIMPLKT-LPELKSLNIQFD 169

Query: 528 NNAIPIEKLSESLEKFKNLLKLKI 551
                +      +E F  L +L  
Sbjct: 170 G----VHDYR-GIEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            S L  + +L +    +             L ++  +  +  + L     I +I   +  
Sbjct: 108 LSGLTSLTLLDISHSAHD---------DSILTKINTLPKVNSIDLSYNGAITDI-MPLKT 157

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISE 472
           L  L+ L+++    +    +G++   KL  L    
Sbjct: 158 LPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFS 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 9e-12
 Identities = 44/308 (14%), Positives = 107/308 (34%), Gaps = 32/308 (10%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI 428
                 S WF  L  +K L+L         +  +  +     L N   L+ L +  V   
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNL-----MGNPYQTLGVTSLFPNLTN---LQTLRIGNVETF 136

Query: 429 REIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSL 486
            EI     A L++L  L+++    L       L S++ + +L +        +      L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 487 SELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
           S ++ L+      A+       ++++ + +K+L      + + +    +L + L     L
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--NELLKLLRYILEL 253

Query: 547 LKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606
            +++         C      + +  + +  +E      +          + +L +  F L
Sbjct: 254 SEVEF------DDCTLNGLGDFNPSESDVVSELGKVETVT---------IRRLHIPQFYL 298

Query: 607 ESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY--LNELNVNWRELQA 662
                   S L  ++++ +   ++  +     +   +++ L L    + E  +     + 
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 663 LFPDLEYL 670
            +P L+ L
Sbjct: 359 AWPSLQTL 366

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 49/359 (13%), Positives = 125/359 (34%), Gaps = 63/359 (17%)

Query: 346 RLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGS 405
           +            + + L+ +     +     F +     +      ++       V   
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV-----VSEL 280

Query: 406 KFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKK 464
             ++ +     +R L +   Y   ++ +  + L  ++ + +     +  +P      LK 
Sbjct: 281 GKVETVT----IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKS 335

Query: 465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-S 523
           L +LD+SE  ++E   K  +       L+  +++    N  + +++  G  L  L+ L S
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ---N-HLRSMQKTGEILLTLKNLTS 391

Query: 524 IYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583
           + ++ N      + +S +  + +  L ++                    +  +       
Sbjct: 392 LDISRN--TFHPMPDSCQWPEKMRFLNLS----------------STGIRVVKTCIPQT- 432

Query: 584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVK 643
                       LE LD+    L+S   +L    L++LYI   +L++L   +   +  + 
Sbjct: 433 ------------LEVLDVSNNNLDSFSLFLP--RLQELYISRNKLKTLPDASL--FPVLL 476

Query: 644 VLRLRYLNELNVNWRELQALFPDLEYLE----KF--NCPMISFFPCDANGVWIKESSPE 696
           V+++   N+L      +      L+ +      +  +CP I +        W+ ++S +
Sbjct: 477 VMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS-----RWLNKNSQK 529

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 42/273 (15%), Positives = 74/273 (27%), Gaps = 60/273 (21%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
               IPS +   + ++ LDL     +T +  G L +   L  L +    +         S
Sbjct: 16  SFTSIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDL-GNSLKE--------LRKL-SIYVNNNAIPIEK 535
           L  L+ L                  DL  N L          L  L  + +  N      
Sbjct: 73  LGSLEHL------------------DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL 595
           ++       NL  L+I                  ++ +               F      
Sbjct: 115 VTSLFPNLTNLQTLRIG------------NVETFSEIRR------------IDF-AGLTS 149

Query: 596 LEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL 653
           L +L++    L +     L  + ++  L +   +   L        S+V+ L LR  N L
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-L 208

Query: 654 NVNWRELQALFPDLEYLEKFNCPMISFFPCDAN 686
                    +      ++K             N
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 9e-11
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 413 NMSALRLLSLQG--VYGIREIPSSIANLSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLD 469
               +  L L G  +     IPSS+ANL  L  L +     L   +P  +  L +L YL 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 470 ISECYLIEYMPKELSSLSELQVL 492
           I+   +   +P  LS +  L  L
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTL 130

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 410 ELKNMSALRLL-----SLQGVYGIREIPSSIANLSNLRVLDLRCCYYLT-KLPKGLDSLK 463
            L  +  L  L     +L G      +P SI++L NL  +       ++  +P    S  
Sbjct: 120 FLSQIKTLVTLDFSYNALSG-----TLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFS 173

Query: 464 KL-TYLDISECYLIEYMPKELSSLSELQVL 492
           KL T + IS   L   +P   ++L+ L  +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFV 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 430 EIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL 489
           +      +  N + + L        L K +   K L  LD+    +   +P+ L+ L  L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 490 QVL 492
             L
Sbjct: 271 HSL 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 32/166 (19%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRC-------------------C 449
           K  +       +       I  +  ++  L+ LR   +                      
Sbjct: 177 KSSRITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

Query: 450 YYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL-----KGFLVTDAKPND 504
                     D+LK LT +++  C  +  +P  L +L E+Q++     +   ++  +  D
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR--GISGEQLKD 293

Query: 505 KICTLEDLGNSLKELRKLSIYVNN-NAIPIEKLSESLEKFKNLLKL 549
               L D     ++++ + I  NN    P+E    SL+K K L  L
Sbjct: 294 DWQALADAPV-GEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGML 335

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 34/255 (13%), Positives = 81/255 (31%), Gaps = 25/255 (9%)

Query: 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRC----CYYLTKLPKGLDSLKKL 465
            L +   +  LSL+G      +P +I  L+ L VL L             PKG+ +    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 466 TYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIY 525
                   +  +             ++K  + +    + +  +++       +  ++   
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS----DPQQKSIKKSSRITLKDTQIGQL 191

Query: 526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL 585
            NN    I  +S+++ +   L +  +              N     + E+    Q     
Sbjct: 192 SNN----ITFVSKAVMRLTKLRQFYM------GNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 586 DGTFGQKDRL--LEKLDL-HCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYST 641
           D  +     L  L  +++ +C  L  LP +L  L  ++ + +   +  S +       + 
Sbjct: 242 DLKWDN---LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 642 VKVLRLRYLNELNVN 656
                   +  + + 
Sbjct: 299 ADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 375 SKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS 434
           SK    L K++  ++G   +                     A    + +     +     
Sbjct: 199 SKAVMRLTKLRQFYMGN--SP------------FVAENICEAWENENSEYAQQYKTEDLK 244

Query: 435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYL--IEYMPKELSSLSELQVL 492
             NL +L  +++  C  LTKLP  L +L ++  ++++       E +  +  +L++  V 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 493 KGFLVTDAKPNDKICTL---EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
           +   +     N  + T      L   +K+L  L    N     +E    +      L  L
Sbjct: 305 EKIQIIYIGYN-NLKTFPVETSLQK-MKKLGMLECLYNQ----LEGKLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 411 LKNMSALRLLSLQG-------VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK--GLDS 461
               S L  ++L G          +++   +  N   L  +DLR    LTKL       +
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATT 511

Query: 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKELR 520
           L  L  +D+S        P +  + S L+        DA+ N  +    E +      L 
Sbjct: 512 LPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-CPSLT 569

Query: 521 KLSIYVNNNAIPIEKLSESLEKFKNLLKLKI 551
           +L I  N+    I K++E +    N+  L I
Sbjct: 570 QLQIGSND----IRKVNEKI--TPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 7/115 (6%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            + L  +  + L    NS   F     +     LK          QG   +RE P  I  
Sbjct: 509 ATTLPYLVGIDLSY--NSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
             +L  L +     + K+ + +     ++ LDI +   I      +    E  + 
Sbjct: 565 CPSLTQLQIGSN-DIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 33/295 (11%), Positives = 80/295 (27%), Gaps = 73/295 (24%)

Query: 365 NVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGS-KFLKELKNMSALRLLSLQ 423
               + P     +   L +++++++    N      +++   + L +      ++++ + 
Sbjct: 260 PNLTKLPT----FLKALPEMQLINVAC--NRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 424 G---VYG---------------------IREIPSSIANLSNLRVLDLRCCYYLTKLPKGL 459
                                       +     +  +   L  L+L     +T++P   
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANF 372

Query: 460 DS-LKKLTYLDISECYLIEYMPK--ELSSLSELQVL-------KGFLVTDAKPNDKICTL 509
               +++  L  +   L +Y+P   +  S+S +  +                       L
Sbjct: 373 CGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSV------DGKNFDPL 425

Query: 510 EDLGNSLKELRKLSIYVNNNAIPIEKL-SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNE 568
           +        +  +++  NN    I K   E       L  + +                 
Sbjct: 426 DPTPFKGINVSSINLS-NNQ---ISKFPKELFSTGSPLSSINLM---------------- 465

Query: 569 HNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYI 623
            N   E    +      +  F     LL  +DL    L  L +      L  L  
Sbjct: 466 GNMLTEIPKNSL--KDENENFKNT-YLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 31/237 (13%), Positives = 77/237 (32%), Gaps = 38/237 (16%)

Query: 448 CCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT-DAKPNDKI 506
              +  +    L+S  ++T L +        +P  +  L+EL+VL   L +   K N+++
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL--ALGSHGEKVNERL 123

Query: 507 CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGN 566
              + +  ++ + +K  + ++     ++      E F +L+K  I         +     
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 567 NEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRG 625
                                          ++      +  +   +  L  LR+ Y+  
Sbjct: 182 T--------------------------LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN 215

Query: 626 GQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682
               +       +    +  +       ++ W  L+     L  +E +NCP ++  P
Sbjct: 216 SPFVAENICEAWENENSEYAQQ--YKTEDLKWDNLKD----LTDVEVYNCPNLTKLP 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 66/348 (18%), Positives = 121/348 (34%), Gaps = 54/348 (15%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG--VY 426
             P  +S  F+ L  +K L L    NS      +    F+      S L +L+L    + 
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLS---NSFTSLRTLTNETFVSL--AHSPLHILNLTKNKIS 394

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
            I     + + L +L VLDL       +L       L+ +  + +S    ++      + 
Sbjct: 395 KI--ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSES-LEKF 543
           +  LQ L        +    +  ++   +  + LR L  + ++NN I    +++  LE  
Sbjct: 453 VPSLQRL------MLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNI--ANINDDMLEGL 503

Query: 544 KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHC 603
           + L  L +                +HN            GG          L   L+L  
Sbjct: 504 EKLEILDL----------------QHNNLARLWKHA-NPGGPIYFLKGLSHL-HILNLES 545

Query: 604 FPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL-NVNWREL 660
              + +       L  L+ + +    L +L         ++K L L+  N + +V  +  
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVF 604

Query: 661 QALFPDLEYLE-KFN-----CPMISFFPCDANGVWIKESSPEGSKNSS 702
              F +L  L+ +FN     C  I++F       WI E+     + SS
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFV-----NWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 59/338 (17%), Positives = 109/338 (32%), Gaps = 47/338 (13%)

Query: 346 RLEGLEKGSTQLLTVSALV--NVSE-QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEV 402
           +++ L+     +   S+L    +S  Q  +F    F  + ++  L L             
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN--V---QLGPS 210

Query: 403 QGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL--SNLRVLDLRCCYYLTKLPKG-L 459
              K   EL   +++R LSL          ++   L  +NL +LDL     L  +     
Sbjct: 211 LTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF 268

Query: 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLK--GFLVTDAKPNDKICTLEDLG-NSL 516
             L +L Y  +    +       L  L  ++ L         +     +  ++D     L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 517 KELRKLSIYVNN-NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575
           K L  L++  N+   I     S       NL  L ++                ++     
Sbjct: 329 KCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLS----------------NSFTSLR 368

Query: 576 EAETQGKGGLDGTFGQKDRLLEKLDL-HCFPLESLPNWLSGL-NLRKLYIRGGQL-RSLQ 632
               +    L  +       L  L+L      +   +  S L +L  L +   ++ + L 
Sbjct: 369 TLTNETFVSLAHSP------LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 633 GDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYL 670
           G   +    +  + L Y N+     R   AL P L+ L
Sbjct: 423 GQEWRGLENIFEIYLSY-NKYLQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 50/290 (17%), Positives = 85/290 (29%), Gaps = 53/290 (18%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI 428
           Q     +  F+   ++  L +G   N+             +  + +  L++L+LQ     
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGF--NTISKLEP-------ELCQKLPMLKVLNLQHNELS 86

Query: 429 REIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLS 487
           +    + A  +NL  L L     + K+        K L  LD+S   L          L 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLS-ESLEKFKN 545
            LQ L          N KI  L+     +     L  + +++N   I++ S         
Sbjct: 146 NLQEL------LLSNN-KIQALKSEELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGR 196

Query: 546 LLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL--LEKLDLHC 603
           L  L +              N             Q    L      +     +  L L  
Sbjct: 197 LFGLFL-------------NNV------------QLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 604 FPLESL-PNWLSGL---NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649
             L +       GL   NL  L +    L  +  D+      ++   L Y
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 55/333 (16%), Positives = 99/333 (29%), Gaps = 76/333 (22%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGR----WKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG 424
                 S     L  V+ L+L R       S     ++    F    + +  L  L+++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF----QWLKCLEHLNMED 338

Query: 425 VYGIREIPSSIANLSNLRVLDL-RCCYYLTKLPKGL---DSLKKLTYLDISECYLIEYMP 480
                   +    L NL+ L L      L  L        +   L  L++++  + +   
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 481 KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGN----------SLKELRKL-SIYVNNN 529
              S L  L+VL                  DLG             + L  +  IY++ N
Sbjct: 399 DAFSWLGHLEVL------------------DLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 530 AIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF 589
              ++    S     +L +L +                                 +D + 
Sbjct: 441 KY-LQLTRNSFALVPSLQRLMLR-------------RVALK-------------NVDSSP 473

Query: 590 GQKDRL--LEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
                L  L  LDL    + ++  + L GL  L  L ++   L  L    +       + 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 646 RLRYLNELNVNWRELQAL----FPDLEYLEKFN 674
            L +L+ LN+       +    F DL  L+  +
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 54/266 (20%), Positives = 98/266 (36%), Gaps = 55/266 (20%)

Query: 431 IPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSEL 489
             ++    S L  LD+     ++KL       L  L  L++    L +   K  +  + L
Sbjct: 41  PAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 490 QVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFKNLLK 548
             L   L+     ++ I  +++  N   + + L ++ +++N +   KL  +  + +NL +
Sbjct: 100 TEL--HLM-----SNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQE 149

Query: 549 LKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL-----------------DGTFGQ 591
           L ++                +NK Q  ++E                         G F  
Sbjct: 150 LLLS----------------NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 592 KDRLLEKLDLH-----CFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHK--KYSTVKV 644
             R L  L L+         E L   L+  ++R L +   QL +    T    K++ + +
Sbjct: 194 IGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 645 LRLRYLNELNVNWRELQALFPDLEYL 670
           L L Y N LNV   +  A  P LEY 
Sbjct: 253 LDLSY-NNLNVVGNDSFAWLPQLEYF 277

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 43/283 (15%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA 436
               L+ ++ L L    N       ++  +   ++   S+L+ L L         P    
Sbjct: 140 TQVQLENLQELLLSN--N---KIQALKSEEL--DIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 437 NLSNLRVLDLRCCYYLTKLPKGL---DSLKKLTYLDISECYLIEYMPKELSSL--SELQV 491
            +  L  L L        L + L    +   +  L +S   L          L  + L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 492 LKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
           L      D   N  +  + +     L +L    +  NN    I+ L         L  ++
Sbjct: 253 L------DLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN----IQHLFSHS--LHGLFNVR 299

Query: 551 IAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL- 609
                          N + +  ++  +        D +F      LE L++    +  + 
Sbjct: 300 YL-------------NLKRSFTKQSISLASLPKIDDFSFQWLKC-LEHLNMEDNDIPGIK 345

Query: 610 PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651
            N  +GL NL+ L +      SL+  T++ + ++    L  LN
Sbjct: 346 SNMFTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILN 387

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 62/343 (18%), Positives = 102/343 (29%), Gaps = 66/343 (19%)

Query: 347 LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSK 406
           +EGL   +     ++   + S+    F       L  V  + L     S K+  +V    
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFH-----CLANVSAMSLAG--VSIKYLEDVPKHF 307

Query: 407 FLKELK------------NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLR--CCYYL 452
             + L             ++  L+ L+L    G   I      L +L  LDL      + 
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFS 365

Query: 453 TKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDL 512
                       L +LD+S    I  M      L ELQ L          +  +  + + 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL--DFQ-----HSTLKRVTEF 417

Query: 513 G--NSLKELRKLSIYVNNNAIPIEKLS-ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH 569
               SL++L  L I   N     +           +L  LK+A                 
Sbjct: 418 SAFLSLEKLLYLDISYTN----TKIDFDGIFLGLTSLNTLKMA----------------G 457

Query: 570 NKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQ 627
           N  ++          L   F     L   LDL    LE +       L  L+ L +    
Sbjct: 458 NSFKD--------NTLSNVFANTTNL-TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 628 LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYL 670
           L  L    + +  ++  L   + N +  +   LQ     L + 
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 39/235 (16%)

Query: 428 IREIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
           ++ +   S +N S L+ LDL  C  +  +       L  L+ L ++   +  + P   S 
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFK 544
           L+ L+ L    V       K+ +LE     + +L  L  + V +N I   KL        
Sbjct: 103 LTSLENL--VAV-----ETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 545 NLLKLKIAWGAGYSKCRNQEGNNEHNK-KQEDEAETQGKGGLDGTFGQKDRLLEKLDLHC 603
           NL+ + ++                +N  +     + Q          +  ++   LD+  
Sbjct: 154 NLVHVDLS----------------YNYIQTITVNDLQF-------LRENPQVNLSLDMSL 190

Query: 604 FPLESLP-NWLSGLNLRKLYIRG-GQLRSLQGDTHKKYSTVKVLRLRYLNELNVN 656
            P++ +      G+ L +L +RG     ++     +  + + V RL      +  
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 44/322 (13%), Positives = 94/322 (29%), Gaps = 53/322 (16%)

Query: 372 DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI 431
             +S     L  +K L++    N       +   K      N++ L  + L     I+ I
Sbjct: 118 SLESFPIGQLITLKKLNVAH--NF------IHSCKLPAYFSNLTNLVHVDLSY-NYIQTI 168

Query: 432 P-SSIANLSNLR----VLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSS 485
             + +  L         LD+     +  +        KL  L +   +    + K  L +
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

Query: 486 LSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFK 544
           L+ L V +  ++ + K    +      +   L ++      +          S+ + KF 
Sbjct: 228 LAGLHVHR-LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND----FSDDIVKFH 282

Query: 545 NLLKL--------KIAWGAGYSKCRN-QEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL 595
            L  +         I +     K    Q  +    + ++                     
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF------------- 329

Query: 596 LEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNV 655
           L+ L L           ++  +L  L +    L      ++        L    L  L++
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD------LGTNSLRHLDL 383

Query: 656 NWRELQAL---FPDLEYLEKFN 674
           ++     +   F  LE L+  +
Sbjct: 384 SFNGAIIMSANFMGLEELQHLD 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 49/312 (15%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG--VYGIREIPSSI 435
           FSN  +++ L L R     +   +       K    +  L  L L G  +      P S 
Sbjct: 52  FSNFSELQWLDLSR--CEIETIED-------KAWHGLHHLSNLILTGNPIQSF--SPGSF 100

Query: 436 ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYM-PKELSSLSELQVL- 492
           + L++L  L       L  L    +  L  L  L+++  ++     P   S+L+ L  + 
Sbjct: 101 SGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 493 -KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL-- 549
                +     ND +  L +       L      ++ N  PI+ + +   +   L +L  
Sbjct: 160 LSYNYIQTITVND-LQFLRENPQVNLSL-----DMSLN--PIDFIQDQAFQGIKLHELTL 211

Query: 550 -------KIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF-GQKDRLLEKLDL 601
                   I      +            + +++      +        G  D  +++  L
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE---RNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 602 HCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRE 659
                 S        L N+  + + G  ++ L+          K  + + L+ +    ++
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-------DVPKHFKWQSLSIIRCQLKQ 321

Query: 660 LQAL-FPDLEYL 670
              L  P L+ L
Sbjct: 322 FPTLDLPFLKSL 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 46/303 (15%), Positives = 92/303 (30%), Gaps = 57/303 (18%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG--VYGIREIPSSI 435
           FS L  +  L L R         E          ++   L  L L    +  +    +++
Sbjct: 53  FSRLINLTFLDLTR--CQIYWIHE-------DTFQSQHRLDTLVLTANPLIFM--AETAL 101

Query: 436 ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494
           +    L+ L       ++ +    L + K L  L +   ++      +     +L+VL  
Sbjct: 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL-- 158

Query: 495 FLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA 552
               D + N  I  L  ED+ + L++   LS+ +N N   I  +            L   
Sbjct: 159 ----DFQNN-AIHYLSKEDMSS-LQQATNLSLNLNGN--DIAGIEPGAFDSAVFQSLNF- 209

Query: 553 WGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN- 611
                       G  ++                 G      + L          E +   
Sbjct: 210 ------------GGTQNLLVI-----------FKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 612 ---WLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLE 668
               L  +++  + ++     ++  +T   +S ++ L L     L+     L  L   L+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGL-STLK 304

Query: 669 YLE 671
            L 
Sbjct: 305 KLV 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 59/324 (18%), Positives = 101/324 (31%), Gaps = 51/324 (15%)

Query: 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS 415
           Q L      N+   F   ++    +L       +     S   F         + L  MS
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF---------EGLCEMS 255

Query: 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYL 475
            +  ++LQ  Y      ++    S L+ LDL   + L++LP GL  L  L  L +S    
Sbjct: 256 -VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKF 313

Query: 476 IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAI-PI 533
                   S+   L  L        K N K   L      L+ L  L  + ++++ I   
Sbjct: 314 ENLCQISASNFPSLTHL------SIKGNTKRLELGT--GCLENLENLRELDLSHDDIETS 365

Query: 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593
           +  +  L    +L  L +++        N+  + +                    F +  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSY--------NEPLSLKT-----------------EAFKECP 400

Query: 594 RLLEKLDLHCFPLESL--PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYL 650
           + LE LDL    L+     +    L  L+ L +    L             ++ L L+  
Sbjct: 401 Q-LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG- 458

Query: 651 NELNVNWRELQALFPDLEYLEKFN 674
           N       +       L  LE   
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 53/305 (17%), Positives = 97/305 (31%), Gaps = 38/305 (12%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI-PSSIA 436
           F +  ++  L L    N      E         L    AL+ L       I  I    + 
Sbjct: 77  FQSQHRLDTLVLTA--NPLIFMAE-------TALSGPKALKHLFFIQTG-ISSIDFIPLH 126

Query: 437 NLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
           N   L  L L   + ++ +        +KL  LD     +     +++SSL +   L   
Sbjct: 127 NQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-- 183

Query: 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAI---------PIEKLSESLEKFKNL 546
           L  +   N  I  +E         + L+     N +          I+ L     +  + 
Sbjct: 184 L--NLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 547 LKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606
             +  A   G  +   +  N + +      +          TF     L ++LDL    L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISS---------NTFHCFSGL-QELDLTATHL 290

Query: 607 ESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFP 665
             LP+ L GL  L+KL +   +  +L   +   + ++  L ++   +             
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 666 DLEYL 670
           +L  L
Sbjct: 351 NLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 46/276 (16%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG--VYGIREIPSSI 435
            SN   +  L +    N+       +       L+N+  LR L L    +         +
Sbjct: 321 ASNFPSLTHLSIKG--NT------KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKG 494
            NLS+L+ L+L     L+   +      +L  LD++   L     +    +L  L+VL  
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-- 430

Query: 495 FLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW 553
               +   +  +    E L + L  L+ L++  N+      + + SL+    L  L ++ 
Sbjct: 431 ----NLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS- 484

Query: 554 GAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNW 612
                                 +            F      +  +DL    L S     
Sbjct: 485 ---------------FCDLSSIDQ---------HAFTSLKM-MNHVDLSHNRLTSSSIEA 519

Query: 613 LSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648
           LS L    L +    +  +        S  + + LR
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 53/314 (16%), Positives = 102/314 (32%), Gaps = 59/314 (18%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI 428
            F +  S  F     ++ L L               S+    L  +S L+ L L      
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTA--T--------HLSELPSGLVGLSTLKKLVLSANK-F 313

Query: 429 REIPS-SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYL--IEYMPKELS 484
             +   S +N  +L  L ++      +L  G L++L+ L  LD+S   +   +    +L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 485 SLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKF 543
           +LS LQ L   L       ++  +L+    + KE  +L  + +    + ++      +  
Sbjct: 374 NLSHLQSL--NLS-----YNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 544 KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLH- 602
             L  L ++                H+       +       DG        L+ L+L  
Sbjct: 425 HLLKVLNLS----------------HSLLDISSEQL-----FDGLPA-----LQHLNLQG 458

Query: 603 ---CFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY--LNELNVN 656
                      N L  L  L  L +    L S+          +  + L +  L   ++ 
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 657 W-RELQALFPDLEY 669
               L+ ++ +L  
Sbjct: 519 ALSHLKGIYLNLAS 532

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 57/324 (17%), Positives = 100/324 (30%), Gaps = 68/324 (20%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVY-GIREIPSSIA 436
               +K+KVL      N       +       ++ ++     LSL      I  I     
Sbjct: 149 GFPTEKLKVLDFQN--N---AIHYLSKE----DMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 437 NLSNLRVLDLRCCYYLTKLPKGLD--SLKKLTYLDISECYLIEYMPKELSSLSELQV--- 491
           + +  + L+      L  + KGL   +++ L      +    +  P     L E+ V   
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 492 -LKGFLVTDAKPND---------------KICTLEDLGNSLKELRKLSIYVNNNAIPIEK 535
            L+     +   N                 +  L      L  L+KL +  N      E 
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK----FEN 315

Query: 536 L-SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDR 594
           L   S   F +L  L I                  N K+ +           G       
Sbjct: 316 LCQISASNFPSLTHLSIK----------------GNTKRLEL--------GTGCLENL-E 350

Query: 595 LLEKLDL---HCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYL 650
            L +LDL        +     L  L +L+ L +   +  SL+ +  K+   +++L L + 
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF- 409

Query: 651 NELNVNWRELQALFPDLEYLEKFN 674
             L V   +  + F +L  L+  N
Sbjct: 410 TRLKVKDAQ--SPFQNLHLLKVLN 431

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 57/318 (17%), Positives = 92/318 (28%), Gaps = 98/318 (30%)

Query: 340 LWCKWARLEGLEKGSTQLLTVSAL----------VNVSE-QFPDFQSKWFSNLKKVKVLH 388
           +W  W R    E+   +   V  +          +NV E           +++     L 
Sbjct: 11  VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITT---LV 67

Query: 389 LGRWKNSAKHFVEVQGSKFLKEL-KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLR 447
           +                  L  L      LR L + G   +  +P     L  L +    
Sbjct: 68  IPDNN--------------LTSLPALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNP 112

Query: 448 CCYYLTKLPKGL--------------DSLKKLTYLDISECYLIEYMPKELSSLSELQVLK 493
              +L  LP GL                   L  L +S+  L   +P   S L +L    
Sbjct: 113 LT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAY- 169

Query: 494 GFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW 553
                    N+++ +L  L + L+EL      V++N   +  L     +   L       
Sbjct: 170 ---------NNQLTSLPMLPSGLQEL-----SVSDN--QLASLPTLPSELYKLWAY---- 209

Query: 554 GAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL 613
                       NN                 L          L++L +    L SLP   
Sbjct: 210 ------------NNRLTS-------------LPALPSG----LKELIVSGNRLTSLPVLP 240

Query: 614 SGLNLRKLYIRGGQLRSL 631
           S   L++L + G +L SL
Sbjct: 241 S--ELKELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 45/254 (17%), Positives = 65/254 (25%), Gaps = 77/254 (30%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
              L ++ +                  +        +  L +   Q    +  +P     
Sbjct: 100 PPGLLELSIFSN-------------PLTHLPALPSGLCKLWIFGNQ----LTSLPVLPPG 142

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L  L V D +    L  LP     L KL   +      +  +P   S L EL V      
Sbjct: 143 LQELSVSDNQ----LASLPALPSELCKLWAYNNQ----LTSLPMLPSGLQELSVSD---- 190

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557
                      L  L     EL KL  Y N     +  L         L +L +      
Sbjct: 191 ---------NQLASLPTLPSELYKLWAYNNR----LTSLPALPS---GLKELIV------ 228

Query: 558 SKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLN 617
                    N                 L     +    L++L +    L SLP   S   
Sbjct: 229 -------SGNRLT-------------SLPVLPSE----LKELMVSGNRLTSLPMLPS--G 262

Query: 618 LRKLYIRGGQLRSL 631
           L  L +   QL  L
Sbjct: 263 LLSLSVYRNQLTRL 276

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 35/235 (14%), Positives = 56/235 (23%), Gaps = 83/235 (35%)

Query: 405 SKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKK 464
           +        +  L   + Q    +  +P   + L  L V D +    L  LP     L K
Sbjct: 154 ASLPALPSELCKLWAYNNQ----LTSLPMLPSGLQELSVSDNQ----LASLPTLPSELYK 205

Query: 465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSI 524
           L   +      +  +P   S L EL V                 L  L     EL++L +
Sbjct: 206 LWAYNNR----LTSLPALPSGLKELIVSG-------------NRLTSLPVLPSELKELMV 248

Query: 525 YVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGG 584
             N     +  L                                                
Sbjct: 249 SGNR----LTSLPMLPSG------------------------------------------ 262

Query: 585 LDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKK 638
                      L  L ++   L  LP  L  L +   + + G  L        ++
Sbjct: 263 -----------LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 48/241 (19%), Positives = 66/241 (27%), Gaps = 68/241 (28%)

Query: 435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494
               +   VL++     LT LP  L     +T L I +  L   +P     L  L+V   
Sbjct: 36  ACLNNGNAVLNVGESG-LTTLPDCL--PAHITTLVIPDNNLTS-LPALPPELRTLEVSG- 90

Query: 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554
                         L  L      L +LSI+ N        L         L        
Sbjct: 91  ------------NQLTSLPVLPPGLLELSIFSNPL----THLPALPSGLCKL-------- 126

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS 614
                          N+             L          L++L +    L SLP   S
Sbjct: 127 -----------WIFGNQLTS----------LPVLPPG----LQELSVSDNQLASLPALPS 161

Query: 615 GLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674
              L KL+    QL SL                  L EL+V+  +L +L      L K  
Sbjct: 162 --ELCKLWAYNNQLTSLPML------------PSGLQELSVSDNQLASLPTLPSELYKLW 207

Query: 675 C 675
            
Sbjct: 208 A 208

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 68/364 (18%), Positives = 113/364 (31%), Gaps = 78/364 (21%)

Query: 347 LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSK 406
           LEGL   + +   ++ L    +   D     F+ L  V    L     + +   +   + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDL----FNCLTNVSSFSLVS--VTIERVKDFSYNF 304

Query: 407 FLKEL---------------KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLR--CC 449
             + L               K++  L   S +G         S  +L +L  LDL     
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGL 359

Query: 450 YYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL 509
            +     +       L YLD+S   +I  M      L +L+ L          +  +  +
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL--DFQ-----HSNLKQM 411

Query: 510 EDLG--NSLKELRKLSIYVNN-NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGN 566
            +     SL+ L  L I   +         +       +L  LK+A              
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMA-------------- 453

Query: 567 NEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIR 624
              N           +         + R L  LDL    LE L P   + L +L+ L + 
Sbjct: 454 --GN---------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 625 GGQLRSLQGDTHKKYSTVKVLRLRYLNELN-VNWRELQALFPDLEYLE----KF--NCPM 677
                SL    +K  ++++VL     N +     +ELQ     L +L      F   C  
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 678 ISFF 681
            SF 
Sbjct: 562 QSFL 565

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
           F +  +++VL L R     +   +          +++S L  L L G         + + 
Sbjct: 48  FFSFPELQVLDLSR--CEIQTIED-------GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 438 LSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEY-MPKELSSLSELQVL 492
           LS+L+ L       L  L    +  LK L  L+++   +  + +P+  S+L+ L+ L
Sbjct: 99  LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 42/258 (16%), Positives = 88/258 (34%), Gaps = 54/258 (20%)

Query: 375 SKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS 434
              FS L  ++ L                                 +L  +         
Sbjct: 93  LGAFSGLSSLQKLVAVE--T--------------------------NLASL-----ENFP 119

Query: 435 IANLSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLK 493
           I +L  L+ L++      + KLP+   +L  L +LD+S   +      +L  L ++ +L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 494 GFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW 553
             L       + +  ++        L KL++  N +++ + K        + L  L++  
Sbjct: 180 LSLDLS---LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-----IQGLAGLEV-- 229

Query: 554 GAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL 613
                +    E  NE N ++ D++  +G   L      ++  L  LD +   +  L N L
Sbjct: 230 ----HRLVLGEFRNEGNLEKFDKSALEGLCNLTI----EEFRLAYLDYYLDDIIDLFNCL 281

Query: 614 SGLNLRKLYIRGGQLRSL 631
           +  N+    +    +  +
Sbjct: 282 T--NVSSFSLVSVTIERV 297

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 47/254 (18%), Positives = 73/254 (28%), Gaps = 54/254 (21%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSL 486
              +IP ++    + + LDL              S  +L  LD+S C +         SL
Sbjct: 18  NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 487 SELQVL-------KGFLVTDAKPNDKICTLEDL--------------GNSLKELRKL-SI 524
           S L  L       +               L  L                 +  L+ L  +
Sbjct: 76  SHLSTLILTGNPIQSL------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 525 YVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGG 584
            V +N I   KL E      NL  L ++             N   +    D         
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLS------------SNKIQSIYCTD--------- 168

Query: 585 LDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGLNLRKLYIRGGQLR-SLQGDTHKKYSTV 642
           L     Q   L   LDL   P+  + P     + L KL +R      ++     +  + +
Sbjct: 169 LRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 643 KVLRLRYLNELNVN 656
           +V RL      N  
Sbjct: 228 EVHRLVLGEFRNEG 241

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 29/174 (16%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            SNL K+  L++    N             +  L+N++ LR L L     I +I   +AN
Sbjct: 84  LSNLVKLTNLYI--GTNKITD---------ISALQNLTNLRELYLNEDN-ISDISP-LAN 130

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+ +  L+L   +        L ++  L YL ++E  + +     +++L++L  L     
Sbjct: 131 LTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL----- 182

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKI 551
                N +I  +  L + L  L   + YVN     I  ++  +     L  LKI
Sbjct: 183 -SLNYN-QIEDISPLAS-LTSLHYFTAYVNQ----ITDIT-PVANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +    +++      LQ    + ++ +    L ++  L +     +  +  G++ L  L Y
Sbjct: 15  IFPDADLAEGIRAVLQK-ASVTDVVT-QEELESITKLVVAGEK-VASIQ-GIEYLTNLEY 70

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           L+++   +      ++S LS L  L    +      +KI  +  L N L  LR+L +  +
Sbjct: 71  LNLNGNQI-----TDISPLSNLVKLTNLYIG----TNKITDISALQN-LTNLRELYLNED 120

Query: 528 NNAIPIEKLSESLEKFKNLLKL 549
           N    I  +S  L     +  L
Sbjct: 121 N----ISDIS-PLANLTKMYSL 137

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +  +K+++ L++L++     I +I S + NLS L  L L       +  + +  L  LT 
Sbjct: 258 INAVKDLTKLKMLNVGS-NQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 468 LDISECYLIEYMPKELSSLSELQVL 492
           L +S+ ++ +  P  L+SLS++   
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSA 338

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 62/345 (17%)

Query: 347 LEGLEKGSTQLLTVSALVNVSE-QFPDFQSKWFSNLKK--VKVLHLGRWKNSAKHFVEVQ 403
           +   +  S  L               D     F+ L +  V+ L L     S      + 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL-----SHGFVFSLN 282

Query: 404 GSKFLKELKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDS 461
              F    + +  L++L+L     I +I       L NL+VL+L     L +L       
Sbjct: 283 SRVF----ETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYG 336

Query: 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLK--GFLVTDAKPNDKICTLEDLGNSLKEL 519
           L K+ Y+D+ + ++     +    L +LQ L      +T       I  +   GN L  L
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396

Query: 520 RKLSIYVN-----NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE 574
            K+++  N      N +    +   L +  +L  L +                  N+   
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN----------------QNRFSS 440

Query: 575 DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL------PNWLSGL-NLRKLYIRGGQ 627
                      D T  +    LE+L L    L+         +   GL +L+ LY+    
Sbjct: 441 CSG--------DQTPSENPS-LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 628 LRSLQGDTHKKYSTVKVLRLRY--LNELNVNWRELQALFPDLEYL 670
           L SL        + ++ L L    L  L+ N      L  +LE L
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-----LPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 45/298 (15%), Positives = 75/298 (25%), Gaps = 52/298 (17%)

Query: 373 FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP 432
                F  L  +  L L                           L    L+         
Sbjct: 88  LHPDAFQGLFHLFELRLYF--CG---------------------LSDAVLK--------D 116

Query: 433 SSIANLSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491
               NL  L  LDL      +  L      L  L  +D S   +      EL  L    +
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 492 LKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKI 551
               L  ++  +          N  + +    + V+ N   ++                +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 552 AWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF-GQKDRLLEKLDLHCFPLESL- 609
                            H+           K     TF G     +  LDL    + SL 
Sbjct: 237 --------------ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 610 PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY--LNELNVNW-RELQAL 663
                 L +L+ L +   ++  +  +       ++VL L Y  L EL  +    L  +
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 45/288 (15%), Positives = 83/288 (28%), Gaps = 37/288 (12%)

Query: 412 KNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLD 469
           + ++    L L   Y IR + +S    L  L++L+L   Y    + K    +L  L  LD
Sbjct: 21  QVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 470 ISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNN 528
           +    +    P     L  L  L             +          + L+ L  + ++ 
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFEL------RLYFC-GLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAW----------GAGYSKCRNQEGNNEHNKKQEDEAE 578
           N I    L  S  K  +L  +  +                       +   N      + 
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 579 TQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRG-GQLRSLQGD--- 634
             GK         ++ +LE LD+                + K           + G    
Sbjct: 193 DWGKCMN----PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 635 ----THKKYSTVKVLRLRYLNELNVNWRELQAL----FPDLEYLEKFN 674
                    +T   L    +  L+++   + +L    F  L+ L+  N
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 52/275 (18%), Positives = 88/275 (32%), Gaps = 52/275 (18%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F+ L  +  L +    N     V +    F    +++  L+ L +     +  I     +
Sbjct: 100 FTGLSNLTKLDISE--N---KIVILLDYMF----QDLYNLKSLEVGDN-DLVYISHRAFS 149

Query: 437 NLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
            L++L  L L  C  LT +P   L  L  L  L +    +          L  L+VL   
Sbjct: 150 GLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL--- 205

Query: 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN-NAIPIEKLSESLEKFKNLLKLKIAWG 554
              +      + T+         L  LSI   N  A+P      ++     L  L ++  
Sbjct: 206 ---EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLS-- 256

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWL 613
                         +N     E              +  RL +++ L    L  +     
Sbjct: 257 --------------YNPISTIEG---------SMLHELLRL-QEIQLVGGQLAVVEPYAF 292

Query: 614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
            GL  LR L + G QL +L+         ++ L L
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 55/268 (20%), Positives = 91/268 (33%), Gaps = 49/268 (18%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYL 468
             +   L  L L     +  +      NL NLR L LR    L  +P G    L  LT L
Sbjct: 52  FASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVN 527
           DISE  ++  +      L  L+ L      +   N  +  +     + L  L +L++   
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSL------EVGDN-DLVYISHRAFSGLNSLEQLTLEKC 162

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
           N    +  +        +L  L                   H                D 
Sbjct: 163 N----LTSIPTEA--LSHLHGL-------------IVLRLRHLNINAIR---------DY 194

Query: 588 TFGQKDRLLEKLDLHCFPLESL--PNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
           +F +  R L+ L++  +P      PN L GLNL  L I    L ++     +    ++ L
Sbjct: 195 SFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 646 RLRYLNELNVNWRELQA-LFPDLEYLEK 672
            L Y N +      ++  +  +L  L++
Sbjct: 254 NLSY-NPI----STIEGSMLHELLRLQE 276

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 55/303 (18%), Positives = 104/303 (34%), Gaps = 58/303 (19%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F++   ++ L L    N       V+   F     N+  LR L L+    ++ IP  +  
Sbjct: 52  FASFPHLEELELNE--N---IVSAVEPGAF----NNLFNLRTLGLRSN-RLKLIPLGVFT 101

Query: 437 NLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
            LSNL  LD+     +  L   +   L  L  L++ +  L+    +  S L+ L+ L   
Sbjct: 102 GLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL--T 158

Query: 496 LVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554
           L         + ++     + L  L  L +        I  + +    FK L +LK+   
Sbjct: 159 LE-----KCNLTSIPTEALSHLHGLIVLRLRHL----NINAIRDYS--FKRLYRLKVLEI 207

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW-L 613
           + +        N  +                          L  L +    L ++P   +
Sbjct: 208 SHWPYLDTMTPNCLYGLN-----------------------LTSLSITHCNLTAVPYLAV 244

Query: 614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA-LFPDLEYLE 671
             L  LR L +    + +++G    +   ++ ++L    +L      ++   F  L YL 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG-GQL----AVVEPYAFRGLNYLR 299

Query: 672 KFN 674
             N
Sbjct: 300 VLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 29/182 (15%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
             + FS L  ++ L L +          +          ++  L +L L+ +  I  I  
Sbjct: 144 SHRAFSGLNSLEQLTLEKCN-----LTSIPTEAL----SHLHGLIVLRLRHL-NINAIRD 193

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
                L  L+VL++    YL  +         LT L I+ C L       +  L  L+ L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 493 KGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEK--FKNLLKL 549
                 +   N  I T+E   + L EL +L  I +    +        +E   F+ L  L
Sbjct: 254 ------NLSYN-PISTIEG--SMLHELLRLQEIQLVGGQL------AVVEPYAFRGLNYL 298

Query: 550 KI 551
           ++
Sbjct: 299 RV 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 43/231 (18%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
               +P  I   +  R+LDL     +  L +    S   L  L+++E  +    P   ++
Sbjct: 22  RFVAVPEGI--PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFK 544
           L  L+ L   L      ++++  +         L  L  + ++ N   I  L + +  F+
Sbjct: 79  LFNLRTLG--L-----RSNRLKLIPL--GVFTGLSNLTKLDISENK--IVILLDYM--FQ 125

Query: 545 NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCF 604
           +L  L             +      N                  F   +  LE+L L   
Sbjct: 126 DLYNL-------------KSLEVGDNDLVYIS---------HRAFSGLNS-LEQLTLEKC 162

Query: 605 PLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL 653
            L S+P   LS L  L  L +R   + +++  + K+   +KVL + +   L
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 374 QSKWFSNLKKVKVLHLGR----------WKNSAK-HFVEVQGSKFLKELKNMSALRLLSL 422
            ++  S+L  + VL L            +K   +   +E+    +L  +   + L  L+L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNL 226

Query: 423 QGVY----GIREIPS-SIANLSNLRVLDLRCCYY--LTKLPKG-LDSLKKLTYLDISECY 474
             +      +  +P  ++ +L  LR L+L    Y  ++ +    L  L +L  + +    
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNL---SYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 475 LIEYMPKELSSLSELQVL 492
           L    P     L+ L+VL
Sbjct: 284 LAVVEPYAFRGLNYLRVL 301

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 56/296 (18%), Positives = 84/296 (28%), Gaps = 55/296 (18%)

Query: 417 LRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY 474
              L       +R I     +   +L  +++     L  +      +L KL  + I +  
Sbjct: 32  AIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 475 LIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIP 532
            + Y+  E   +L  LQ L          N  I  L D+      +   L I  N N   
Sbjct: 91  NLLYINPEAFQNLPNLQYLLIS-------NTGIKHLPDVHKIHSLQKVLLDIQDNIN--- 140

Query: 533 IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK 592
           I  +  +   F  L                       N  QE           +GT    
Sbjct: 141 IHTIERNS--FVGLSFES------------VILWLNKNGIQEIHNSA-----FNGT---- 177

Query: 593 DRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYL 650
            +L E        LE LP +   G      L I   ++ SL          +K LR R  
Sbjct: 178 -QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARST 233

Query: 651 NELNVNWRELQAL--FPDLEYLEKFNCPMISFFPCDANGVWIKESSPEGSKNSSII 704
             L    ++L  L     L        P      C A   W ++ S      +  I
Sbjct: 234 YNL----KKLPTLEKLVALMEAS-LTYP----SHCCAFANWRRQISELHPICNKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 373 FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP 432
                  +  +  +L +    N   +   ++ + F+          +L L    GI+EI 
Sbjct: 119 LPDVHKIHSLQKVLLDIQD--NI--NIHTIERNSFVG---LSFESVILWLNK-NGIQEIH 170

Query: 433 SSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491
           +S  N + L  L+L     L +LP            LDIS   +       L +L +L+ 
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 492 L 492
            
Sbjct: 231 R 231

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 58/305 (19%), Positives = 95/305 (31%), Gaps = 64/305 (20%)

Query: 417 LRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCC--YYLTKLPKGLDSLKKLTYLDISEC 473
              L L+    ++ +P  +   L+ L  L L      +     +       L YLD+S  
Sbjct: 30  ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 474 YLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG--NSLKELRKLSIYVNN-NA 530
             +  M      L +L+ L          +  +  + +     SL+ L  L I   +   
Sbjct: 89  -GVITMSSNFLGLEQLEHL--DFQ-----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 531 IPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG 590
                 +       +L  LK+A                 N  QE+         L   F 
Sbjct: 141 AF----NGIFNGLSSLEVLKMA----------------GNSFQEN--------FLPDIF- 171

Query: 591 QKDRL--LEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLR 646
               L  L  LDL    LE L     + L +L+ L +      SL    +K  ++++VL 
Sbjct: 172 --TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 647 LRYLNEL-NVNWRELQALFPDLEYLEKFN------CPMISFFPCDANGVWIKESSPEGSK 699
               N +     +ELQ     L +L          C   SF        WIK+      +
Sbjct: 230 YSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ------WIKDQRQLLVE 282

Query: 700 NSSII 704
              + 
Sbjct: 283 VERME 287

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 22/175 (12%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
           F  L ++  L L    N    F               ++L+ L L    G+  + S+   
Sbjct: 48  FDKLTQLTKLSLSS--NGL-SFKGCCSQSD----FGTTSLKYLDLSF-NGVITMSSNFLG 99

Query: 438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
           L  L  LD +    L ++ +     SL+ L YLDIS  +         + LS L+VLK  
Sbjct: 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-- 156

Query: 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
            +      +    L D+   L+ L  L +        +E+LS +   F +L  L+
Sbjct: 157 -MAGNSFQENF--LPDIFTELRNLTFLDLSQCQ----LEQLSPTA--FNSLSSLQ 202

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            +  F+ L  ++VL +         F E        EL+N   L  L L     + ++  
Sbjct: 142 FNGIFNGLSSLEVLKMAGNS-----FQENFLPDIFTELRN---LTFLDLSQC-QLEQLSP 192

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDIS 471
           +   +LS+L+VL++        L       L  L  LD S
Sbjct: 193 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYY--LTKLPKG-LDSLKKLT 466
            +++  L +L L     IR+I       L++L  L+L   +   LT +P G  + L KL 
Sbjct: 95  FRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLEL---FDNWLTVIPSGAFEYLSKLR 150

Query: 467 YLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIY 525
            L +    +        + +  L  L      D     K+  + +   + + L  L  + 
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRL------DLGELKKLEYISE--GAFEGLFNLKYLN 202

Query: 526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL 585
           +    I      + +     L+ L             +E     N   E           
Sbjct: 203 LGMCNI------KDMPNLTPLVGL-------------EELEMSGNHFPEIRP-------- 235

Query: 586 DGTFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVK 643
            G+F      L+KL +    +  +      GL +L +L +    L SL  D       + 
Sbjct: 236 -GSFHGLSS-LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 644 VLRLR 648
            L L 
Sbjct: 294 ELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 58/303 (19%), Positives = 106/303 (34%), Gaps = 71/303 (23%)

Query: 417 LRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY 474
            R L+L     I+ I +    +L +L VL L     + ++  G  + L  L  L++ + +
Sbjct: 77  TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW 134

Query: 475 LIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPI 533
           L          LS+L+ L  +L      N+ I ++     N +  L +L +        +
Sbjct: 135 LTVIPSGAFEYLSKLREL--WL-----RNNPIESIPSYAFNRVPSLMRLDLGELKK---L 184

Query: 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593
           E +SE    F+ L  L             +  N      ++          L        
Sbjct: 185 EYISEGA--FEGLFNL-------------KYLNLGMCNIKDMPN-------LTPL----- 217

Query: 594 RLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651
             LE+L++       +      GL +L+KL++   Q+  ++ +            L  L 
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GLASLV 269

Query: 652 ELNVNWRELQAL----FPDLEYLEKF---------NCPMISFFPCDANGVWIKESSPEGS 698
           ELN+    L +L    F  L YL +          +C ++          W++E  P  S
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAW------WLREYIPTNS 323

Query: 699 KNS 701
              
Sbjct: 324 TCC 326

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F+ L  +  L L    N       +    F    + +S LR L L+    I  IPS    
Sbjct: 119 FNGLASLNTLELFD--N---WLTVIPSGAF----EYLSKLRELWLRNNP-IESIPSYAFN 168

Query: 437 NLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
            + +L  LDL     L  + +G  + L  L YL++  C  I+ MP  L+ L  L+ L   
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEEL--E 224

Query: 496 LVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEK--FKNLLKLK 550
           +       +    +     S   L  L  ++V N+ +        +E+  F  L  L 
Sbjct: 225 MS-----GNHFPEIRP--GSFHGLSSLKKLWVMNSQV------SLIERNAFDGLASLV 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 26/159 (16%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            S  F+ +  +  L LG      K    +    F    + +  L+ L+L     I+++P 
Sbjct: 163 PSYAFNRVPSLMRLDLGEL----KKLEYISEGAF----EGLFNLKYLNLGM-CNIKDMP- 212

Query: 434 SIANLSNLRVLDLRCCYY--LTKLPKG-LDSLKKLTYLDISECYLIEYMPKE-LSSLSEL 489
           ++  L  L  L++         ++  G    L  L  L +     +  + +     L+ L
Sbjct: 213 NLTPLVGLEELEM---SGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASL 268

Query: 490 QVLKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVN 527
             L   L      ++ + +L  DL   L+ L +L ++ N
Sbjct: 269 VEL--NL-----AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            S  F  L K++ L L    N       +    F      + +L  L L  +  +  I  
Sbjct: 139 PSGAFEYLSKLRELWLRN--N---PIESIPSYAF----NRVPSLMRLDLGELKKLEYISE 189

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
                L NL+ L+L  C  +  +P  L  L  L  L++S  +  E  P     LS L+ L
Sbjct: 190 GAFEGLFNLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 493 KGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFKNLLKLK 550
             +++     N ++  +E   N+   L  L  + + +N   +  L   L  F  L  L 
Sbjct: 248 --WVM-----NSQVSLIER--NAFDGLASLVELNLAHNN--LSSLPHDL--FTPLRYLV 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 77/276 (27%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F +L+ +++L L R  N   H   ++   F      ++ L  L L     +  IP+    
Sbjct: 84  FKHLRHLEILQLSR--N---HIRTIEIGAF----NGLANLNTLELFD-NRLTTIPNGAFV 133

Query: 437 NLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKG 494
            LS L+ L LR    +  +P    + +  L  LD+ E   + Y+ +     LS L+ L  
Sbjct: 134 YLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL-- 190

Query: 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554
            L         +  + +L   L +L +L +  N     +  +      F+ L+ L     
Sbjct: 191 NL-----AMCNLREIPNLTP-LIKLDELDLSGN----HLSAIRPGS--FQGLMHL----- 233

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWL 613
                                                     +KL +    ++ +  N  
Sbjct: 234 ------------------------------------------QKLWMIQSQIQVIERNAF 251

Query: 614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648
             L +L ++ +    L  L  D       ++ + L 
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 28/180 (15%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            +  F  L K+K L L    N       +    F      + +LR L L  +  +  I  
Sbjct: 128 PNGAFVYLSKLKELWLRN--N---PIESIPSYAF----NRIPSLRRLDLGELKRLSYISE 178

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQV 491
                LSNLR L+L  C  L ++P  L  L KL  LD+S    +  +       L  LQ 
Sbjct: 179 GAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQK 235

Query: 492 LKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
           L  +++       +I  +E +  ++L+ L ++   + +N   +  L   L  F  L  L+
Sbjct: 236 L--WMI-----QSQIQVIERNAFDNLQSLVEI--NLAHNN--LTLLPHDL--FTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 61/305 (20%), Positives = 114/305 (37%), Gaps = 75/305 (24%)

Query: 417 LRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY 474
            RLL+L     I+ I  +   +L +L +L L    ++  +  G  + L  L  L++ +  
Sbjct: 66  TRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN- 122

Query: 475 LIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIP 532
            +  +P      LS+L+ L  +L      N+ I ++     N +  LR+L +        
Sbjct: 123 RLTTIPNGAFVYLSKLKEL--WL-----RNNPIESIPSYAFNRIPSLRRLDLGELKR--- 172

Query: 533 IEKLSE-SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQ 591
           +  +SE + E   NL  L +A                    +E                 
Sbjct: 173 LSYISEGAFEGLSNLRYLNLA----------------MCNLREIP-----------NLTP 205

Query: 592 KDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649
             + L++LDL    L ++      GL +L+KL++   Q++ ++ +            L+ 
Sbjct: 206 LIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--------FDNLQS 256

Query: 650 LNELNVNWRELQAL----FPDLEYLEKF---------NCPMISFFPCDANGVWIKESSPE 696
           L E+N+    L  L    F  L +LE+          NC ++          WIK+ +P 
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSW------WIKDMAPS 310

Query: 697 GSKNS 701
            +   
Sbjct: 311 NTACC 315

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 20/156 (12%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            S  F+ +  ++ L LG      K    +    F    + +S LR L+L     +REIP 
Sbjct: 152 PSYAFNRIPSLRRLDLGEL----KRLSYISEGAF----EGLSNLRYLNLAM-CNLREIP- 201

Query: 434 SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
           ++  L  L  LDL    +L+ +  G    L  L  L + +  +         +L  L  +
Sbjct: 202 NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 493 KGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVN 527
              L      ++ +  L  DL   L  L ++ ++ N
Sbjct: 261 --NL-----AHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 73/301 (24%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            S L  ++ L  G                 LK L N++ L  L +     + +I   +A 
Sbjct: 152 LSGLTSLQQLSFGNQVTD------------LKPLANLTTLERLDISS-NKVSDISV-LAK 197

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+NL  L       ++ +   L  L  L  L ++   L +     L+SL+ L  L     
Sbjct: 198 LTNLESLIATNN-QISDIT-PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDL----- 248

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557
            D   N +I  L  L   L +L +L +  N     I  +S  L     L  L++      
Sbjct: 249 -DLANN-QISNLAPLSG-LTKLTELKLGANQ----ISNIS-PLAGLTALTNLEL------ 294

Query: 558 SKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL- 616
                       N+ ++    +  K             L  L L+   +  +   +S L 
Sbjct: 295 ----------NENQLEDISPISNLKN------------LTYLTLYFNNISDISP-VSSLT 331

Query: 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFP--DLEYLEKFN 674
            L++L+    ++  +    +          L  +N L+    ++  L P  +L  + +  
Sbjct: 332 KLQRLFFYNNKVSDVSSLAN----------LTNINWLSAGHNQISDLTPLANLTRITQLG 381

Query: 675 C 675
            
Sbjct: 382 L 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 53/301 (17%), Positives = 101/301 (33%), Gaps = 73/301 (24%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            + L +     LG  K +                 ++  +  L      GI+ I   +  
Sbjct: 20  DTALAEKMKTVLG--KTNVTD---------TVSQTDLDQVTTLQADR-LGIKSI-DGVEY 66

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+NL  ++      LT +   L +L KL  + ++   + +     L++L+ L  L   L 
Sbjct: 67  LNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGL--TLF 120

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557
                N++I  ++ L N L  L +L +  N     I  +  +L    +L +L        
Sbjct: 121 -----NNQITDIDPLKN-LTNLNRLELSSNT----ISDI-SALSGLTSLQQLSF------ 163

Query: 558 SKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL- 616
                       N+  + +                   LE+LD+    +  +   L+ L 
Sbjct: 164 -----------GNQVTDLKP-----------LANLTT-LERLDISSNKVSDISV-LAKLT 199

Query: 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQAL--FPDLEYLEKFN 674
           NL  L     Q+  +               L  L+EL++N  +L+ +     L  L   +
Sbjct: 200 NLESLIATNNQISDITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLD 249

Query: 675 C 675
            
Sbjct: 250 L 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 75/259 (28%)

Query: 428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS----------------LKKLTYLDIS 471
           + E+P    +L +L V +      L+ LP  L+                    L  +D+ 
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161

Query: 472 ECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAI 531
              L + +P    SL  +             N+++  L +L N L  L  +    N+   
Sbjct: 162 NNSL-KKLPDLPPSLEFIAAG----------NNQLEELPELQN-LPFLTAIYADNNS--- 206

Query: 532 PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQ 591
            ++KL +      +L  +               GNN   +  E +               
Sbjct: 207 -LKKLPDLP---LSLESIVA-------------GNNILEELPELQNLPF----------- 238

Query: 592 KDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651
               L  +      L++LP+     +L  L +R   L  L               L +L+
Sbjct: 239 ----LTTIYADNNLLKTLPDLPP--SLEALNVRDNYLTDL---------PELPQSLTFLD 283

Query: 652 ELNVNWRELQALFPDLEYL 670
                +  L  L P+L YL
Sbjct: 284 VSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 42/230 (18%), Positives = 77/230 (33%), Gaps = 49/230 (21%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           L EL+N S L+++ +     ++++P       +L  +       L +LP+ L +L  LT 
Sbjct: 146 LPELQNSSFLKIIDVDN-NSLKKLPDL---PPSLEFIAAGNNQ-LEELPE-LQNLPFLTA 199

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           +      L + +P    SL  +             N+ +  L +L N L  L  +    N
Sbjct: 200 IYADNNSLKK-LPDLPLSLESIVAG----------NNILEELPELQN-LPFLTTIYADNN 247

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
                ++ L +     + L                   N   N   +     Q    LD 
Sbjct: 248 L----LKTLPDLPPSLEAL-------------------NVRDNYLTDLPELPQSLTFLDV 284

Query: 588 TFGQKDRL------LEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSL 631
           +      L      L  L+     + SL +     +L +L +   +L  L
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPP--SLEELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 54/310 (17%), Positives = 93/310 (30%), Gaps = 66/310 (21%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVY----GIREIPS 433
             N+K     +   W    ++     G +    +  +          +     G+  +P 
Sbjct: 30  AENVKSKTEYYNA-WSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88

Query: 434 SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK---------ELS 484
                 +L  L   C   LT+LP+   SLK L   + +   L +  P          +L 
Sbjct: 89  LP---PHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 485 SLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFK 544
            L ELQ      + D   N     L+ L +    L  ++   N     +E+L E L+   
Sbjct: 145 KLPELQNSSFLKIIDVDNNS----LKKLPDLPPSLEFIAAGNNQ----LEELPE-LQNLP 195

Query: 545 NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCF 604
            L  +                  ++N  ++          L          LE +     
Sbjct: 196 FLTAIYA----------------DNNSLKK----------LPDLPLS----LESIVAGNN 225

Query: 605 PLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALF 664
            LE LP   +   L  +Y     L++L               L  LN  +    +L  L 
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPS---------LEALNVRDNYLTDLPELP 276

Query: 665 PDLEYLEKFN 674
             L +L+   
Sbjct: 277 QSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 49/229 (21%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           L EL+N+  L  +       ++++P    +L ++   +      L +LP  L +L  LT 
Sbjct: 188 LPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI----LEELP-ELQNLPFLTT 241

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL----- 522
           +      L + +P    SL  L V   +L    +    +  L+   N    L +L     
Sbjct: 242 IYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 300

Query: 523 SIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGK 582
            +  ++N     ++    +   +L +L ++                +NK  E        
Sbjct: 301 YLNASSN-----EIRSLCDLPPSLEELNVS----------------NNKLIE-------- 331

Query: 583 GGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSL 631
             L     +    LE+L      L  +P      NL++L++    LR  
Sbjct: 332 --LPALPPR----LERLIASFNHLAEVPELPQ--NLKQLHVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 46/236 (19%), Positives = 70/236 (29%), Gaps = 66/236 (27%)

Query: 409 KELKNMSALRLLSLQGVYGIREIPSSIANLS-------------NLRVLDLRCCYYLTKL 455
            E +N+ +            R  P                        L+L     L+ L
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSL 86

Query: 456 PKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNS 515
           P   +    L  L  S   L E +P+   SL  L V           N+ +  L DL   
Sbjct: 87  P---ELPPHLESLVASCNSLTE-LPELPQSLKSLLVD----------NNNLKALSDLPPL 132

Query: 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575
           L+ L      V+NN   +EKL E L+    L  + +                ++N  ++ 
Sbjct: 133 LEYL-----GVSNN--QLEKLPE-LQNSSFLKIIDV----------------DNNSLKK- 167

Query: 576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSL 631
                    L          LE +      LE LP   +   L  +Y     L+ L
Sbjct: 168 ---------LPDLPPS----LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 33/260 (12%), Positives = 68/260 (26%), Gaps = 72/260 (27%)

Query: 428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYL------------ 475
           + E+P    N+ +          +    P G    +++    + +C              
Sbjct: 23  LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82

Query: 476 IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEK 535
           +  +P+    L  L              + +  L +L  SLK L   +  +      +  
Sbjct: 83  LSSLPELPPHLESLVAS----------CNSLTELPELPQSLKSLLVDNNNLKA----LSD 128

Query: 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL 595
           L   LE    +   ++                                            
Sbjct: 129 LPPLLEYL-GVSNNQLEKLPELQNSSF--------------------------------- 154

Query: 596 LEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNV 655
           L+ +D+    L+ LP+     +L  +     QL  L           ++  L +L  +  
Sbjct: 155 LKIIDVDNNSLKKLPDLPP--SLEFIAAGNNQLEELP----------ELQNLPFLTAIYA 202

Query: 656 NWRELQALFPDLEYLEKFNC 675
           +   L+ L      LE    
Sbjct: 203 DNNSLKKLPDLPLSLESIVA 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 41/204 (20%)

Query: 431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490
           I     + + L+         LT++P   +++K  T    +        P       E+ 
Sbjct: 3   INPRNVSNTFLQEPLRHS-SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 491 V--LKGFLVTDAKPND-KICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLL 547
           V  L+  L   A   +     L  L      L  L    N+    + +L E  +  K+LL
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNS----LTELPELPQSLKSLL 117

Query: 548 KLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLE 607
                             NN                           LLE L +    LE
Sbjct: 118 VD----------------NNNLKA-----------------LSDLPPLLEYLGVSNNQLE 144

Query: 608 SLPNWLSGLNLRKLYIRGGQLRSL 631
            LP   +   L+ + +    L+ L
Sbjct: 145 KLPELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 88/325 (27%)

Query: 338 EDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAK 397
             ++     L+ L      L ++ A  N+ E+ P+       NL  +  ++     N   
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL-----QNLPFLTTIYADN--N--- 247

Query: 398 HFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457
                          ++ AL +        + ++P    +L+ L V +      L++LP 
Sbjct: 248 -----LLKTLPDLPPSLEALNVRDNY----LTDLPELPQSLTFLDVSENIFSG-LSELPP 297

Query: 458 GL--------------DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN 503
            L              D    L  L++S   LIE +P     L  L              
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASF---------- 346

Query: 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ 563
                L ++    + L++L  +V  N  P+ +  +  E  ++L                 
Sbjct: 347 ---NHLAEVPELPQNLKQL--HVEYN--PLREFPDIPESVEDL----------------- 382

Query: 564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYI 623
                ++   E     Q               L++L +   PL   P+     ++  L +
Sbjct: 383 ---RMNSHLAEVPELPQN--------------LKQLHVETNPLREFPDIPE--SVEDLRM 423

Query: 624 RGGQLRSLQGDTHKKYSTVKVLRLR 648
              ++       H+    ++     
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFE 448

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 6e-08
 Identities = 42/272 (15%), Positives = 71/272 (26%), Gaps = 66/272 (24%)

Query: 407 FLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLT 466
           +           L        +  +   +  ++    L L     L+ LP  L    ++T
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLN-LSSLPDNL--PPQIT 83

Query: 467 YLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYV 526
            L+I++  LI  +P+  +SL  L                   L  L      L+ L +  
Sbjct: 84  VLEITQNALIS-LPELPASLEYLDACD-------------NRLSTLPELPASLKHLDVDN 129

Query: 527 NNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD 586
           N     +  L E     + +                   N ++N+               
Sbjct: 130 NQ----LTMLPELPALLEYI-------------------NADNNQLTMLPELPTS----- 161

Query: 587 GTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQ---GDTHKKYSTVK 643
                    LE L +    L  LP      +L  L +    L SL       H    T  
Sbjct: 162 ---------LEVLSVRNNQLTFLPELPE--SLEALDVSTNLLESLPAVPVRNHHSEETEI 210

Query: 644 VLRLRYLNELNVNWRELQALFPDLEYLEKFNC 675
             R R  N +      +      L+       
Sbjct: 211 FFRCRE-NRI----THIPENILSLDPTCTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 58/225 (25%)

Query: 428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487
           +  +P   A+L  L   D R    L+ LP   +    L +LD+    L   +P+  + L 
Sbjct: 92  LISLPELPASLEYLDACDNR----LSTLP---ELPASLKHLDVDNNQL-TMLPELPALLE 143

Query: 488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLL 547
            +             N+++  L +L  SL+ L      V NN   +  L E  E   +L 
Sbjct: 144 YINAD----------NNQLTMLPELPTSLEVL-----SVRNN--QLTFLPELPE---SLE 183

Query: 548 KLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK---LDLHCF 604
            L ++                 N  +           L     +     E          
Sbjct: 184 ALDVS----------------TNLLES----------LPAVPVRNHHSEETEIFFRCREN 217

Query: 605 PLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648
            +  +P  +  L     + +    L S   ++  + +        
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 7e-08
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 17/141 (12%)

Query: 415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY 474
           +++ L S     G   + SS+ +L+ L  L L   +    +  G      LT LD+S   
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 475 LIEYMP--KELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNN--N 529
           L   +     L S S L+ L      +   N      +   G  L  L  L +  N+   
Sbjct: 112 LSGPVTTLTSLGSCSGLKFL------NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 530 AIPIEKLSESLEKFKNLLKLK 550
           A                 +LK
Sbjct: 166 ANV-----VGWVLSDGCGELK 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 41/182 (22%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG--VYGIREIPSS 434
           +  +   ++ L +    N       + G  F + +   + L+LL++      G   IP  
Sbjct: 218 FLGDCSALQHLDISG--NK------LSGD-FSRAISTCTELKLLNISSNQFVG--PIPPL 266

Query: 435 IANLSNLRVLDLRCCYYLT-KLPKGLD-SLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
              L +L+ L L      T ++P  L  +   LT LD+S  +    +P    S S L+ L
Sbjct: 267 --PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 493 -------KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN--NAIP--IEKLSESLE 541
                   G L            ++ L   ++ L+ L +  N     +P  +  LS SL 
Sbjct: 324 ALSSNNFSGEL-----------PMDTLLK-MRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 542 KF 543
             
Sbjct: 372 TL 373

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 51/201 (25%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGS--KFLKELKNMSALRLLSLQG--VYGIREIP 432
               L  ++VL L            + G+             L+ L++ G  + G  ++ 
Sbjct: 146 GGLKLNSLEVLDLS--------ANSISGANVVGWVLSDGCGELKHLAISGNKISG--DVD 195

Query: 433 SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
             ++   NL  LD+    + T +P  L     L +LDIS   L     + +S+ +EL++L
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 493 -------KGFLVTDAKPNDKICTLEDL---------------GNSLKELRKLSIYVNN-- 528
                   G +     P   + +L+ L                 +   L  L +  N+  
Sbjct: 253 NISSNQFVGPI-----PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 529 NAIPIEKLSESLEKFKNLLKL 549
            A+P             L  L
Sbjct: 308 GAVP-----PFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 406 KFLKELKNMSALRLLSLQGVYGI--REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLK 463
           K    +KN    +     G            +  LS     ++    Y        D+  
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 464 KLTYLDISECYLIEYMPKELSSLSELQVL 492
            + +LD+S   L  Y+PKE+ S+  L +L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 29/180 (16%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSK-FLKELKNMSALRLLSLQGVYGIREIP-SS 434
            F     +  L L     S        G    L  L + S L+ L++           S 
Sbjct: 95  GFKCSASLTSLDL-----SRNSL---SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

Query: 435 IANLSNLRVLDLRCCYYLTKLPKGLD---SLKKLTYLDISECYLIEYMPKELSSLSELQV 491
              L++L VLDL           G        +L +L IS   +   +   +S    L+ 
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204

Query: 492 LKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN--NAIPIEKLSESLEKFKNLLKL 549
           L      D   N+    +  LG+    L+ L I  N             ++     L  L
Sbjct: 205 L------DVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFS-----RAISTCTELKLL 252

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 409 KELKNMSALRLLSLQG--VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLT 466
             L N + L  +SL    + G  EIP  I  L NL +L L    +   +P  L   + L 
Sbjct: 484 SGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 467 YLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYV 526
           +LD++       +P  +   S    +    +   +          + N     ++     
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK--IAANFIAGKRY-------VYIKN-DGMKKECHGAG 591

Query: 527 NNNAIPIEKLSESLEKFKNLLKLKIA 552
           N         SE L +        I 
Sbjct: 592 NLLEFQGI-RSEQLNRLSTRNPCNIT 616

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 409 KELKNMSALRLL-----SLQGVYGIREIPSSIANLSNLRVLDLRCCYYLT-KLPKGLDSL 462
               N  ++  L      L G      IP  I ++  L +L+L     ++  +P  +  L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSG-----YIPKEIGSMPYLFILNLG-HNDISGSIPDEVGDL 679

Query: 463 KKLTYLDISECYLIEYMPKELSSLSELQVL 492
           + L  LD+S   L   +P+ +S+L+ L  +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSA-LRLLSL-----QGVYGIRE 430
               ++ +KVL L    N         G    + L N+SA L  L L      G      
Sbjct: 338 TLLKMRGLKVLDLSF--NE------FSGE-LPESLTNLSASLLTLDLSSNNFSG-----P 383

Query: 431 IPSSIAN--LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487
           I  ++     + L+ L L+     T K+P  L +  +L  L +S  YL   +P  L SLS
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 488 ELQVL 492
           +L+ L
Sbjct: 443 KLRDL 447

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F   + + +L L    N       +  + F      ++ L  L L     +R +  +   
Sbjct: 52  FRACRNLTILWLHS--N---VLARIDAAAF----TGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 437 NLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKG 494
            L  L  L L  C  L +L  G    L  L YL + +   ++ +P +    L  L  L  
Sbjct: 103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL-- 158

Query: 495 FLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKI 551
           FL       ++I ++ +     L  L +L ++ N     +  +      F++L +L  
Sbjct: 159 FL-----HGNRISSVPERAFRGLHSLDRLLLHQNR----VAHVHPHA--FRDLGRLMT 205

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 45/243 (18%), Positives = 72/243 (29%), Gaps = 66/243 (27%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYL 468
            +    L +L L     +  I ++    L+ L  LDL     L  +       L +L  L
Sbjct: 52  FRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVN 527
            +  C L E  P     L+ LQ L  +L      ++ +  L D     L  L  L ++ N
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYL--YL-----QDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
                I  + E    F+ L  L                                      
Sbjct: 164 R----ISSVPERA--FRGLHSLD------------------------------------- 180

Query: 588 TFGQKDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645
                     +L LH   +  +  +    L  L  LY+    L +L  +       ++ L
Sbjct: 181 ----------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 646 RLR 648
           RL 
Sbjct: 231 RLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 48/286 (16%), Positives = 92/286 (32%), Gaps = 69/286 (24%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
           G++ +P  I   +  + + L     ++ +P     + + LT L +    L        + 
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPIEKLSESLEKFK 544
           L+ L+ L      D   N ++ +++    + L  L  L +        +++L   L  F+
Sbjct: 79  LALLEQL------DLSDNAQLRSVDPATFHGLGRLHTLHLDRCG----LQELGPGL--FR 126

Query: 545 NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL-DGTFGQKDRL--LEKLDL 601
            L  L+  +              + N  Q           L D TF     L  L  L L
Sbjct: 127 GLAALQYLY-------------LQDNALQA----------LPDDTF---RDLGNLTHLFL 160

Query: 602 HCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRE 659
           H   + S+P     GL +L +L +   ++  +     +    +  L L   N L      
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNL----SA 215

Query: 660 LQA-LFPDLEYLEKFN---------CPMISFFPCDANGVWIKESSP 695
           L       L  L+            C     +       W+++   
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWA------WLQKFRG 255

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 28/181 (15%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            +  F+ L  ++ L L    N+      V  + F      +  L  L L    G++E+  
Sbjct: 72  DAAAFTGLALLEQLDLSD--NA--QLRSVDPATF----HGLGRLHTLHLDR-CGLQELGP 122

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKE-LSSLSELQ 490
            +   L+ L+ L L+    L  LP      L  LT+L +     I  +P+     L  L 
Sbjct: 123 GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLD 180

Query: 491 VLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
            L   L       +++  +       L  L  L ++ NN    +  L         L  L
Sbjct: 181 RL--LL-----HQNRVAHVHPHAFRDLGRLMTLYLFANN----LSALPTEA--LAPLRAL 227

Query: 550 K 550
           +
Sbjct: 228 Q 228

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
             +L  ++ L L     +   F               ++L+ L L    G+  + S+   
Sbjct: 343 EVDLPSLEFLDLS---RNGLSFKGCCSQSD----FGTTSLKYLDLSFN-GVITMSSNFLG 394

Query: 438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
           L  L  LD +    L ++ +     SL+ L YLDIS  +         + LS L+VL   
Sbjct: 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL--- 450

Query: 496 LVTDAKPND-KICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLK 550
                  N  +   L D+   L+ L  L +        +E+LS +   F +L  L+
Sbjct: 451 ---KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ----LEQLSPTA--FNSLSSLQ 497

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 46/307 (14%), Positives = 102/307 (33%), Gaps = 27/307 (8%)

Query: 372 DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI 431
             ++    +LK +K L++    N  + F      K  +   N++ L  L L     I+ I
Sbjct: 114 SLENFPIGHLKTLKELNVAH--NLIQSF------KLPEYFSNLTNLEHLDLSS-NKIQSI 164

Query: 432 P-SSIANLSNLRV----LDLRCCYYLTKLPKGLDSLKKLTYLDISECYL-IEYMPKELSS 485
             + +  L  + +    LDL     +  +  G     +L  L +   +  +  M   +  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKN 545
           L+ L+V +  ++ + +    +   +   ++L+ L  L+I     A     L + ++ F  
Sbjct: 224 LAGLEVHR-LVLGEFRNEGNLEKFDK--SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 546 LLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP 605
           L  +             +   +          E            +   L ++L      
Sbjct: 281 LTNVSSFS---LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-KRLTFTSNK 336

Query: 606 LESLPNWLSGLNLRKLYIRGGQLR--SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQAL 663
             +  + +   +L  L +    L        +    +++K L L + N +         L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGL 395

Query: 664 FPDLEYL 670
              LE+L
Sbjct: 396 -EQLEHL 401

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 54/292 (18%), Positives = 80/292 (27%), Gaps = 72/292 (24%)

Query: 411 LKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYL 468
             +   L++L L     I+ I   +  +LS+L  L L     +  L  G    L  L  L
Sbjct: 48  FFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN 528
              E  L       +  L  L+ L                                 V +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKEL--------------------------------NVAH 133

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588
           N I   KL E      NL  L ++                 NK Q               
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLS----------------SNKIQSIYCTDLRV------ 171

Query: 589 FGQKDRLLEKLDLHCFPLESLP-NWLSGLNLRKLYIRGGQLR-SLQGDTHKKYSTVKVLR 646
             Q   L   LDL   P+  +       + L KL +R      ++     +  + ++V R
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 647 LRYLNELNVN------------WRELQALFPDLEYLEKFNCPMISFFPCDAN 686
           L      N                 L      L YL+ +   +I  F C  N
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYL 468
             N+  +  + +     ++++ S    NLS +  +++R    LT +    L  L  L +L
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL--SIYV 526
            I     ++  P +L+ +    +     +TD   N  + ++    N+ + L     ++ +
Sbjct: 111 GIFNT-GLKMFP-DLTKVYSTDIFFILEITD---NPYMTSIPV--NAFQGLCNETLTLKL 163

Query: 527 NNNAI 531
            NN  
Sbjct: 164 YNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 45/230 (19%)

Query: 415 SALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISE 472
            + + L L     +R IPS + +NL N+  + +     L +L      +L K+T+++I  
Sbjct: 31  PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 473 CYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLG--NSLKELRKLSIYVNNN 529
              + Y+  + L  L  L+ L   +      N  +    DL    S      L I  N  
Sbjct: 90  TRNLTYIDPDALKELPLLKFL--GIF-----NTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 530 AIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF 589
              +  +  +   F+ L                      +N     +         +GT 
Sbjct: 143 ---MTSIPVNA--FQGLCNET------------LTLKLYNNGFTSVQGYA-----FNGTK 180

Query: 590 GQKDRLLEKLDLH-CFPLESLPNW-LSGL--NLRKLYIRGGQLRSLQGDT 635
                 L+ + L+    L  +      G+      L +    + +L    
Sbjct: 181 ------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 21/135 (15%)

Query: 378 FSNLKKVKVLHLGR------------WKNSAKHFVEVQGSKFLKELKN------MSALRL 419
              L  +K L +              +       +E+  + ++  +         +    
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 420 LSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLK-KLTYLDISECYLIE 477
           L L    G   +     N + L  + L    YLT + K     +    + LD+S+  +  
Sbjct: 161 LKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 478 YMPKELSSLSELQVL 492
              K L  L EL   
Sbjct: 220 LPSKGLEHLKELIAR 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 43/275 (15%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
                 ++ L L    N       ++   F     ++ +L  L L     +  + SS   
Sbjct: 72  LQRCVNLQALVLTS--N---GINTIEEDSF----SSLGSLEHLDLSY-NYLSNLSSSWFK 121

Query: 437 NLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKG 494
            LS+L  L+L    Y T     L   L KL  L +        + ++  + L+ L+ L  
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-- 179

Query: 495 FLVTDAKPNDKICTLEDLG-NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW 553
               +   +  + + E     S++ +  L +++         L E          ++   
Sbjct: 180 ----EIDAS-DLQSYEPKSLKSIQNVSHLILHMK----QHILLLEIF--VDVTSSVECLE 228

Query: 554 GAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL 613
                       + + +     E  T    G   +  +K      + +    L  +   L
Sbjct: 229 ----------LRDTDLDTFHFSELST----GETNSLIKKFTF-RNVKITDESLFQVMKLL 273

Query: 614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
           + +  L +L     QL+S+      + ++++ + L
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 50/265 (18%), Positives = 81/265 (30%), Gaps = 67/265 (25%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
            +  IPS +     ++ LDL     +T +    L     L  L ++   +        SS
Sbjct: 42  SLNSIPSGL--TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGN------------SLKELRKLSIYVNNNAIPI 533
           L  L+ L                  DL               L  L  L++  N    P 
Sbjct: 99  LGSLEHL------------------DLSYNYLSNLSSSWFKPLSSLTFLNLLGN----PY 136

Query: 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593
           + L E+   F +L KL+I             GN +   K + +          G      
Sbjct: 137 KTLGET-SLFSHLTKLQILR----------VGNMDTFTKIQRKD-------FAGL----- 173

Query: 594 RLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651
             LE+L++    L+S     L  + N+  L +   Q   L        S+V+ L LR  +
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 652 ELNVNWRELQAL----FPDLEYLEK 672
               ++ EL                
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRN 258

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
            S WF  L  +  L+L    N    +  +  +     L  +  LR+ ++       +I  
Sbjct: 116 SSSWFKPLSSLTFLNLLG--N---PYKTLGETSLFSHLTKLQILRVGNM---DTFTKIQR 167

Query: 434 SI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491
              A L+ L  L++     L       L S++ +++L +     I  +   +   S ++ 
Sbjct: 168 KDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 492 LK-GFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
           L+      D     ++ T E +        R + I  + +   + KL   +     L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT-DESLFQVMKLLNQISGLLEL 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 48/268 (17%), Positives = 90/268 (33%), Gaps = 62/268 (23%)

Query: 415 SALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISE 472
               LL LQ    I EI      NL NL  L L     ++K+  G    L KL  L +S+
Sbjct: 52  PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109

Query: 473 CYLIEYMPKEL-SSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNA 530
              ++ +P+++  +L EL+V            ++I  +    +    L ++  + +  N 
Sbjct: 110 N-QLKELPEKMPKTLQELRV----------HENEITKVRK--SVFNGLNQMIVVELGTNP 156

Query: 531 IPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL----D 586
           +    +      F+ + KL                                   +     
Sbjct: 157 LKSSGIENGA--FQGMKKLSYI-------------RIADTN-------------ITTIPQ 188

Query: 587 GTFGQKDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKV 644
           G        L +L L    +  +    L GL NL KL +    + ++   +      ++ 
Sbjct: 189 GLPPS----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 645 LRLRYLNELNVNWRELQALFPDLEYLEK 672
           L L   N+L     ++     D +Y++ 
Sbjct: 245 LHLNN-NKL----VKVPGGLADHKYIQV 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 44/281 (15%), Positives = 92/281 (32%), Gaps = 84/281 (29%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F+ L K++ L+L +  N      E+              L+ L +     I ++  S+  
Sbjct: 96  FAPLVKLERLYLSK--N---QLKELPEKMP-------KTLQELRVHENE-ITKVRKSVFN 142

Query: 437 NLSNLRVLDLRC-CYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKEL-SSLSELQVLK 493
            L+ + V++L       + +  G    +KKL+Y+ I++   I  +P+ L  SL+EL +  
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL-- 199

Query: 494 GFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFKNLLKLKIA 552
                     +KI  ++    SLK L  L  + ++ N   I  +        N   L+  
Sbjct: 200 --------DGNKITKVDA--ASLKGLNNLAKLGLSFN--SISAVDNGS--LANTPHLR-- 243

Query: 553 WGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW 612
                                                        +L L+   L  +P  
Sbjct: 244 ---------------------------------------------ELHLNNNKLVKVPGG 258

Query: 613 LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL-RLRYLN 651
           L+    ++ +Y+    + ++  +                ++
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 35/187 (18%)

Query: 373 FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP 432
            ++  F  +KK+  + +        +   +             +L  L L G   I ++ 
Sbjct: 162 IENGAFQGMKKLSYIRIAD--T---NITTIPQGLP-------PSLTELHLDG-NKITKVD 208

Query: 433 S-SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490
           + S+  L+NL  L L     ++ +  G L +   L  L ++   L   +P  L+    +Q
Sbjct: 209 AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 491 VLKGFLVTDAKPNDKICTLED-------LGNSLKELRKLSIYVNNNAIPIEKLSESLEKF 543
           V+  +L      N+ I  +                   +S+   +N +   ++  S   F
Sbjct: 267 VV--YL-----HNNNISAIGSNDFCPPGYNTKKASYSGVSL--FSNPVQYWEIQPST--F 315

Query: 544 KNLLKLK 550
           + +    
Sbjct: 316 RCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 27/182 (14%)

Query: 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS 433
           +   F+ L ++ V+ LG   N  K    ++   F    + M  L  + +     I  IP 
Sbjct: 137 RKSVFNGLNQMIVVELGT--NPLKS-SGIENGAF----QGMKKLSYIRIAD-TNITTIPQ 188

Query: 434 SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
            +    +L  L L     +TK+    L  L  L  L +S   +       L++   L+ L
Sbjct: 189 GL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 493 KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES----LEKFKNLLK 548
              L      N+K+  +       K ++ + ++ N     I  +  +             
Sbjct: 246 --HLN-----NNKLVKVPGGLADHKYIQVVYLHNN----NISAIGSNDFCPPGYNTKKAS 294

Query: 549 LK 550
             
Sbjct: 295 YS 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 21/145 (14%)

Query: 409 KELKNMSALRLLSLQGVY-GIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           ++    +    + L G+   I ++ ++++ L   + L L     + K+   L  ++ L  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKI-SSLSGMENLRI 74

Query: 468 LDISECYL--IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIY 525
           L +    +  IE +     +L EL +            ++I +L  +   L  LR L + 
Sbjct: 75  LSLGRNLIKKIENLDAVADTLEELWI----------SYNQIASLSGIEK-LVNLRVLYMS 123

Query: 526 VNNNAIPIEKLSESLEKFKNLLKLK 550
            N     I    E ++K   L KL+
Sbjct: 124 NNK----ITNWGE-IDKLAALDKLE 143

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA 436
           W  N   +  + L    N      ++    F      M  L  L +     +  +     
Sbjct: 243 WLLNYPGLVEVDLSY--N---ELEKIMYHPF----VKMQRLERLYISNNR-LVALNLYGQ 292

Query: 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491
            +  L+VLDL   + L  + +      +L  L +    ++        +L  L +
Sbjct: 293 PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 33/267 (12%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYL 468
           L +   + LL+L     I EI +   A    ++ L +     +  LP     ++  LT L
Sbjct: 65  LDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 122

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVN 527
            +    L         +  +L  L          N  +  +ED    +   L+ L +  N
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTL------SMSNN-NLERIEDDTFQATTSLQNLQLSSN 175

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
                +  +  SL    +L    +      S             ++ D +          
Sbjct: 176 R----LTHVDLSL--IPSLFHANV------SYNLLSTLAIPIAVEELDASHNSINVVRGP 223

Query: 588 TFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
              +    L  L L    L      L+   L ++ +   +L  +      K   ++ L +
Sbjct: 224 VNVE----LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 648 RYLNELNVNWRELQALFPDLEYLEKFN 674
              N L      L      +  L+  +
Sbjct: 280 SN-NRL----VALNLYGQPIPTLKVLD 301

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 56/314 (17%), Positives = 104/314 (33%), Gaps = 57/314 (18%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           F+    ++ L++G   N       +    F    +N+  L +L L+    +  +P  I  
Sbjct: 89  FAYAHTIQKLYMGF--N---AIRYLPPHVF----QNVPLLTVLVLERND-LSSLPRGIFH 138

Query: 437 NLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
           N   L  L +     L ++      +   L  L +S   L       + SL    V    
Sbjct: 139 NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197

Query: 496 LVTDAKP---------NDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
           L T A P         ++ I  +        EL  L +  NN    +   +  L  +  L
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN----LTDTA-WLLNYPGL 250

Query: 547 LKL--------KIAWGAGYSKCRN-QEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE 597
           +++        KI +   + K +  +     +N+             L+        L +
Sbjct: 251 VEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVA----------LNLYGQPIPTL-K 298

Query: 598 KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVN 656
            LDL    L  +         L  LY+    + +L+  TH        L+   L+  + +
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT------LKNLTLSHNDWD 352

Query: 657 WRELQALFPDLEYL 670
              L+ALF ++   
Sbjct: 353 CNSLRALFRNVARP 366

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 31/174 (17%)

Query: 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438
             L      +LG  K S            L   K +S ++  +      I+ + + +   
Sbjct: 16  PGLANAVKQNLG--KQSVTD---------LVSQKELSGVQNFNGDN-SNIQSL-AGMQFF 62

Query: 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT 498
           +NL+ L L     ++ L   L  L KL  L ++   L        + LS L +       
Sbjct: 63  TNLKELHLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL------- 113

Query: 499 DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA 552
               N+++   + L + LK L  LSI  N     ++ +   L     L  L + 
Sbjct: 114 ---DNNELRDTDSLIH-LKNLEILSIRNNK----LKSIV-MLGFLSKLEVLDLH 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 31/172 (18%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            + L+ +K L L   + +            +  L  +S L++L L     I  I S +A 
Sbjct: 103 IAGLQSIKTLDLTSTQITD-----------VTPLAGLSNLQVLYLDL-NQITNI-SPLAG 149

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+NL+ L +     ++ L   L +L KLT L   +  +      ++S L+ L  L    +
Sbjct: 150 LTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADDNKI-----SDISPLASLPNLIEVHL 202

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
                N++I  +  L N    L  +   + N  I     ++ +    NL+  
Sbjct: 203 K----NNQISDVSPLAN-TSNLFIV--TLTNQTIT----NQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 16/143 (11%), Positives = 49/143 (34%), Gaps = 22/143 (15%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +     ++    ++      + +   + A+L  +  L       +T +  G+  L  L  
Sbjct: 12  IFPDPALANAIKIAAGK-SNVTDT-VTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIG 67

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           L++ +  +      +L+ L  L  +    ++     + +  +  +   L+ ++ L   + 
Sbjct: 68  LELKDNQI-----TDLAPLKNLTKITELELS----GNPLKNVSAIAG-LQSIKTL--DLT 115

Query: 528 NNAIPIEKLSESLEKFKNLLKLK 550
           +  I        +     L  L+
Sbjct: 116 STQI------TDVTPLAGLSNLQ 132

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            + L  ++ L +G                 L  L N+S L  L       I +I S +A+
Sbjct: 147 LAGLTNLQYLSIG--NAQVSD---------LTPLANLSKLTTLKADDN-KISDI-SPLAS 193

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L NL  + L+    ++ +   L +   L  + ++   +        ++L    V+KG   
Sbjct: 194 LPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

Query: 498 TDAKPN 503
               P 
Sbjct: 252 APIAPA 257

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 26/156 (16%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYL 468
           L   S L+ LSL+G+     I +++A  SNL  L+L  C   ++  L   L S  +L  L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173

Query: 469 DISECYLI--EYMPKELSSLS-ELQVLK----GFLVTDAKPNDKICTLEDLGNSLKELRK 521
           ++S C+    +++   ++ +S  +  L        +  +        L  L      L  
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-------DLSTLVRRCPNLVH 226

Query: 522 LSIY----VNNNAIPIEKLSESLEKFKNLLKLKIAW 553
           L +     + N+        +   +   L  L ++ 
Sbjct: 227 LDLSDSVMLKNDCF------QEFFQLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 412 KNMSALRLLSLQGVYGIR-EIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL---KKLTY 467
           +    L  L L     ++ +       L+ L+ L L  CY +   P+ L  L     L  
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKT 276

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKP 502
           L +        +     +L  LQ+      T A+P
Sbjct: 277 LQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 311

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 19/159 (11%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +K L N+  L  L L     I+++ SS+ +L  L+ L L     ++ +  GL  L +L  
Sbjct: 80  IKPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLES 135

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           L +    +      +++ LS L  L    +     +++I  +  L   L +L+ L  Y++
Sbjct: 136 LYLGNNKI-----TDITVLSRLTKLDTLSLE----DNQISDIVPLAG-LTKLQNL--YLS 183

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGN 566
            N   I  L   L   KNL  L++      +K  N + N
Sbjct: 184 KN--HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSN 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDI 470
               +     +L+    + +   +   L+++  +       +  + +G+  L  +T L +
Sbjct: 17  DDAFAETIKDNLKKK-SVTDA-VTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFL 72

Query: 471 SECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530
           +   L +  P  L++L  L  L  FL       +KI  L  L + LK+L+ LS+  N   
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWL--FLD-----ENKIKDLSSLKD-LKKLKSLSLEHNG-- 120

Query: 531 IPIEKLSESLEKFKNLLKLKIA 552
             I  +   L     L  L + 
Sbjct: 121 --ISDI-NGLVHLPQLESLYLG 139

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
             +L +++ L+LG   N             +  L  ++ L  LSL+    I +I   +A 
Sbjct: 127 LVHLPQLESLYLG--NNKITD---------ITVLSRLTKLDTLSLEDNQ-ISDI-VPLAG 173

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+ L+ L L   + ++ L + L  LK L  L++     +       S+L     +K    
Sbjct: 174 LTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557
           +   P   I    D      +          + I  + ++    K +   ++       Y
Sbjct: 232 SLVTPEI-ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

Query: 558 SKCRNQEGNNEHNKKQEDE 576
           +   + +G     K +   
Sbjct: 291 TVSYDVDGTVIKTKVEAGT 309

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 63/241 (26%)

Query: 413 NMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDI 470
           +   L++L L     I+ I      +LS+L  L L     +  L  G    L  L  L  
Sbjct: 50  SFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVA 107

Query: 471 SECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG--NSLKELRKLSIYVNN 528
            E  L       +  L  L+ L   +      ++ I + +     ++L  L  L +  N 
Sbjct: 108 VETNLASLENFPIGHLKTLKEL--NV-----AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588
               I+ +  +    + L ++ +                                     
Sbjct: 161 ----IQSIYCTD--LRVLHQMPL------------------------------------- 177

Query: 589 FGQKDRLLEKLDLHCFPLESLPNWL-SGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
                 L   LDL   P+  +       + L++L +   QL+S+      + ++++ + L
Sbjct: 178 ------LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 648 R 648
            
Sbjct: 232 H 232

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 46/278 (16%)

Query: 373 FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP 432
            Q  W + +    + ++           +  G+  LK L     +  +        +   
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS-LKALS----IHQVVSDVFGFPQSYI 295

Query: 433 SSIANLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYLDISECYLIEYMPKELSSLSELQV 491
                 SN+ + +         +       +    +LD S   L + + +    L+EL+ 
Sbjct: 296 YE--IFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 492 LKGFLVTDAKPNDKICTLEDLGNSLKELRKLSI-YVNNNAIPIEKLSESLEKFKNLLKLK 550
           L        + N ++  L  +     +++ L    ++ N++  ++        K+LL L 
Sbjct: 353 L------ILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL- 404

Query: 551 IAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP 610
                          N   N               D  F      ++ LDLH   ++S+P
Sbjct: 405 ---------------NMSSNILT------------DTIFRCLPPRIKVLDLHSNKIKSIP 437

Query: 611 NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
             +  L  L++L +   QL+S+      + ++++ + L
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 43/246 (17%), Positives = 81/246 (32%), Gaps = 74/246 (30%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
            I EI     N +  ++  +     L +       S   +  LD+S   L +    +L+ 
Sbjct: 1   AIHEI---KQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKN 545
            ++L++L      +   N  +    DL + L  LR L   +NNN +      + L    +
Sbjct: 57  FTKLELL------NLSSN-VLYETLDLES-LSTLRTL--DLNNNYV------QELLVGPS 100

Query: 546 LLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP 605
           +  L  A                +N                         + ++      
Sbjct: 101 IETLHAA----------------NNN------------------------ISRVSCSRGQ 120

Query: 606 LESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELN-VNWRELQALF 664
                        + +Y+   ++  L+       S V+ L L+  NE++ VN+ EL A  
Sbjct: 121 -----------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASS 168

Query: 665 PDLEYL 670
             LE+L
Sbjct: 169 DTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 63/311 (20%)

Query: 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI 428
                 +   +   K+++L+L    N               +L+++S LR L L      
Sbjct: 45  PLSQISAADLAPFTKLELLNLSS--NVLYE---------TLDLESLSTLRTLDLNN---- 89

Query: 429 REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE 488
             +   +    ++  L       ++++       +    + ++   +      +    S 
Sbjct: 90  NYV-QELLVGPSIETLHAANNN-ISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 489 LQVLKGFLVTDAKPNDKICTLE--DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
           +Q L      D K N +I T+   +L  S   L  L++  N     I  +   +  F  L
Sbjct: 146 VQYL------DLKLN-EIDTVNFAELAASSDTLEHLNLQYNF----IYDVKGQV-VFAKL 193

Query: 547 LKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606
             L ++                 NK             +   F      +  + L    L
Sbjct: 194 KTLDLS----------------SNKLAF----------MGPEFQSAAG-VTWISLRNNKL 226

Query: 607 ESLPNWLSGL-NLRKLYIRGGQLRSLQ-GDTHKKYSTVKVLRLRYLNELNVNWRELQALF 664
             +   L    NL    +RG         D   K   V+ +  + + +L     E +   
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTV 285

Query: 665 PDLEYLEKFNC 675
           P L +   + C
Sbjct: 286 PTLGHYGAYCC 296

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 22/144 (15%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +K L N+  L  L L     ++++ SS+ +L  L+ L L     ++ +  GL  L +L  
Sbjct: 83  IKPLANLKNLGWLFLDEN-KVKDL-SSLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLES 138

Query: 468 LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527
           L +    + +     LS L++L  L        + N +I  +  L   L +L+ L  Y++
Sbjct: 139 LYLGNNKITDITV--LSRLTKLDTL------SLEDN-QISDIVPLAG-LTKLQNL--YLS 186

Query: 528 NNAIPIEKLSESLEKFKNLLKLKI 551
            N I        L     L  L +
Sbjct: 187 KNHI------SDLRALAGLKNLDV 204

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDI 470
               +     +L+    + +   +   L+++  +       +  + +G+  L  +T L +
Sbjct: 20  DDAFAETIKDNLKK-KSVTDA-VTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFL 75

Query: 471 SECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530
           +   L +  P  L++L  L  L  FL       +K+  L  L + LK+L+ LS+  N   
Sbjct: 76  NGNKLTDIKP--LANLKNLGWL--FLD-----ENKVKDLSSLKD-LKKLKSLSLEHNG-- 123

Query: 531 IPIEKLSESLEKFKNLLKLKIA 552
             I  +   L     L  L + 
Sbjct: 124 --ISDI-NGLVHLPQLESLYLG 142

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
             +L +++ L+LG   N             +  L  ++ L  LSL+    I +I   +A 
Sbjct: 130 LVHLPQLESLYLG--NNKITD---------ITVLSRLTKLDTLSLED-NQISDI-VPLAG 176

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
           L+ L+ L L   + ++ L + L  LK L  L++     +       S+L     +K    
Sbjct: 177 LTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 498 TDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAI 531
           +   P      + D G+      K ++  +    
Sbjct: 235 SLVTPE----IISDDGD----YEKPNVKWHLPEF 260

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 38/296 (12%), Positives = 91/296 (30%), Gaps = 10/296 (3%)

Query: 198 LKQSEIVELMEMFINFREKFGFDEFMEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVR 257
            +++ +       +    + G    M        ++R     ++         P  ++  
Sbjct: 252 REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLND 311

Query: 258 KRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDV 317
           +     + +    + +++         E   ++   D+ L   E       V +   +  
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC 371

Query: 318 NNRFKMDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKW 377
               +++P  +  ++       +      L+ L      L   S L  V      +    
Sbjct: 372 KELQELEPENKWCLLT------IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            S       +    + +     +  +    L  L+ +  +  L L     +R +P ++A 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSH-NRLRALPPALAA 484

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEY-MPKELSSLSELQVL 492
           L  L VL       L  +  G+ +L +L  L +    L +    + L S   L +L
Sbjct: 485 LRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 45/233 (19%), Positives = 71/233 (30%), Gaps = 37/233 (15%)

Query: 448 CCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC 507
                    +   + ++L   ++S       +  EL S  ELQ L+        P +K C
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSV-EKSTVLQSELESCKELQELE--------PENKWC 384

Query: 508 TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNN 567
            L              I +     P+    E+L+ F  L  +     A     R++    
Sbjct: 385 LLT------------IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 568 EHNKKQEDEAET----QGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLY 622
               K E           K        ++  L+  LDL    L +LP  L+ L  L  L 
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492

Query: 623 IRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC 675
                L ++ G          V  L  L EL +    LQ     ++ L     
Sbjct: 493 ASDNALENVDG----------VANLPRLQELLLCNNRLQQS-AAIQPLVSCPR 534

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 41/267 (15%), Positives = 80/267 (29%), Gaps = 33/267 (12%)

Query: 411 LKNMSALRLLSLQGVYGIREIPSSI-ANLSNLRVLDLRCCYYLTKLPKGL-DSLKKLTYL 468
           L +   + LL+L     I EI +   A    ++ L +     +  LP  +  ++  LT L
Sbjct: 71  LDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128

Query: 469 DISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVN 527
            +    L         +  +L  L          N  +  +ED    +   L+ L +  N
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTL------SMSNN-NLERIEDDTFQATTSLQNLQLSSN 181

Query: 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587
                +  +  SL    +L    +      S             ++ D +          
Sbjct: 182 R----LTHVDLSL--IPSLFHANV------SYNLLSTLAIPIAVEELDASHNSINVVRGP 229

Query: 588 TFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647
              +    L  L L    L      L+   L ++ +   +L  +      K   ++ L +
Sbjct: 230 VNVE----LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 648 RYLNELNVNWRELQALFPDLEYLEKFN 674
              N L      L      +  L+  +
Sbjct: 286 SN-NRL----VALNLYGQPIPTLKVLD 307

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA 436
           W  N   +  + L    N      ++    F      M  L  L +     +  +     
Sbjct: 249 WLLNYPGLVEVDLSY--N---ELEKIMYHPF----VKMQRLERLYISNNR-LVALNLYGQ 298

Query: 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490
            +  L+VLDL    +L  + +      +L  L +    ++        +L  L 
Sbjct: 299 PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 52/261 (19%), Positives = 90/261 (34%), Gaps = 53/261 (20%)

Query: 417 LRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY 474
             LL LQ    I E+       L +L  L L     ++K+ +     L+KL  L IS+ +
Sbjct: 56  TTLLDLQN-NDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH 113

Query: 475 LIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPI 533
           L+E  P   SSL EL++           +++I  +         LR +  I +  N +  
Sbjct: 114 LVEIPPNLPSSLVELRI----------HDNRIRKVPK--GVFSGLRNMNCIEMGGNPLEN 161

Query: 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593
                       L  L+I+                  K                      
Sbjct: 162 SGFEPGAFDGLKLNYLRIS----------------EAKLTGIPK---------DLP---- 192

Query: 594 RLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651
             L +L L    ++++    L     L +L +   Q+R ++  +     T++ L L   N
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-N 251

Query: 652 ELNVNWRELQALFPDLEYLEK 672
           +L      + A  PDL+ L+ 
Sbjct: 252 KL----SRVPAGLPDLKLLQV 268

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 51/279 (18%), Positives = 87/279 (31%), Gaps = 81/279 (29%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI-A 436
           FS L+K++ L++ +  N   H VE+  +         S+L  L +     IR++P  + +
Sbjct: 98  FSPLRKLQKLYISK--N---HLVEIPPNLP-------SSLVELRIHDNR-IRKVPKGVFS 144

Query: 437 NLSNLRVLDLRC-CYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495
            L N+  +++       +    G     KL YL ISE  L         +L+EL  L   
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH-LDH- 202

Query: 496 LVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554
                  N KI  +E     L    KL  + + +N   I  +         L        
Sbjct: 203 -------N-KIQAIEL--EDLLRYSKLYRLGLGHN--QIRMIENGS--LSFLPT------ 242

Query: 555 AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS 614
                                                    L +L L    L  +P  L 
Sbjct: 243 -----------------------------------------LRELHLDNNKLSRVPAGLP 261

Query: 615 GL-NLRKLYIRGGQLRSLQGDT-HKKYSTVKVLRLRYLN 651
            L  L+ +Y+    +  +  +        VK      ++
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 46/262 (17%), Positives = 80/262 (30%), Gaps = 58/262 (22%)

Query: 342 CK-WARLEGLEKGSTQL--LTVSALVNVSEQFPDFQS---KWFSNLKKVKVLHLGRWKNS 395
           CK W  +E   +    +      +   V  +FP  +S   K   +     ++  G W   
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDG-WGGY 92

Query: 396 AKHFVEVQGSKF--LKEL----------------KNMSALRLLSLQGVYGIRE--IPSSI 435
              ++E   S +  L+E+                K+    ++L L    G     + +  
Sbjct: 93  VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA 152

Query: 436 ANLSNLRVLDLRCCY-------YLTKLPKGLDSL------------------------KK 464
           A   NL+ LDLR          +L+  P    SL                          
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSI 524
           L  L ++    +E +   L    +L+ L     T     D    L    +  KELR LS 
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 525 YVNNNAIPIEKLSESLEKFKNL 546
           + +     +  +     +   L
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTL 294

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 35/267 (13%), Positives = 77/267 (28%), Gaps = 54/267 (20%)

Query: 432 PSSIANLSNLRVLDLRCCYYLTK---------------LPKGLDSLKKLTYLDISECYL- 475
            + I     +R ++L+   +                  +     S   L  + +    + 
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT 118

Query: 476 ---IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN-NAI 531
              +E + K   +   L +      +          L  +  + + L++L +  ++ + +
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDV 171

Query: 532 PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQ 591
               LS   + + +L+ L I+         ++   +                 L      
Sbjct: 172 SGHWLSHFPDTYTSLVSLNISC------LASEVSFS----------------AL-ERLVT 208

Query: 592 KDRLLEKLDL-HCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLR-LR 648
           +   L+ L L    PLE L   L     L +L   G                +   + LR
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 649 YLN-ELNVNWRELQALFPDLEYLEKFN 674
            L+   +     L A++     L   N
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLN 295

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 53/316 (16%), Positives = 95/316 (30%), Gaps = 72/316 (22%)

Query: 408 LKELKNMSALRLLSL-QGVYGIREIPSSIANLSNLRVLDLRCCY--------------YL 452
           LK   + +   L+    G Y    I +  ++ + L  + L+                   
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNF 132

Query: 453 TKL---------PKGLDSL----KKLTYLDISECYLIEYMPKELSSLSE----LQVLK-- 493
             L           GL ++    + L  LD+ E  + +     LS   +    L  L   
Sbjct: 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS 192

Query: 494 --GFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKI 551
                V+ +        LE L      L+ L +   N A+P+EKL+  L++   L +L  
Sbjct: 193 CLASEVSFS-------ALERLVTRCPNLKSLKL---NRAVPLEKLATLLQRAPQLEELGT 242

Query: 552 AWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN 611
                      +   + ++      +  +    L G +      L  +   C  L +   
Sbjct: 243 ------GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT--- 293

Query: 612 WLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELN----VNWRELQALFPDL 667
               LNL    ++   L  L           +  +L+ L  L+         L +   DL
Sbjct: 294 ----LNLSYATVQSYDLVKL---------LCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 668 EYLEKFNCPMISFFPC 683
             L  F        P 
Sbjct: 341 RELRVFPSEPFVMEPN 356

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 16/171 (9%)

Query: 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSK--FLKELKNMSALRLLSLQGVYGIREIPSSIA 436
            N   +    L   +  A  ++ ++     F   +++   LR LSL G+   +       
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 437 NLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYLDISECYLIEY-MPKELSSLSELQVL- 492
               + +L +      +   +   L     L  L+I +C   +  +    S L  ++ L 
Sbjct: 454 YAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512

Query: 493 -KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542
                V+           + LG  + +L  + +     A      S  +E+
Sbjct: 513 MSSCSVSFG-------ACKLLGQKMPKL-NVEVIDERGAPDSRPESCPVER 555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 25/194 (12%)

Query: 347 LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSK 406
           LE L      L ++   +N +       +       +++ L  G +    +  V    S 
Sbjct: 203 LERLVTRCPNLKSLK--LNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259

Query: 407 FLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK-LPKGLDSLKKL 465
            L   K    LR LS         +P+  +  S L  L+L      +  L K L    KL
Sbjct: 260 ALSGCKE---LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 466 TYLDISEC-------YLIEYMPK----ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGN 514
             L + +         L           +       +     +T+         L  +  
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-------GLVSVSM 369

Query: 515 SLKELRKLSIYVNN 528
              +L  +  +   
Sbjct: 370 GCPKLESVLYFCRQ 383

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 53/373 (14%), Positives = 119/373 (31%), Gaps = 62/373 (16%)

Query: 338 EDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAK 397
           E +      L  ++ G  ++L +      +    +F     +    +   ++        
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM-------- 264

Query: 398 HFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLT-KLP 456
                        L     L  L L  + G  E+P      + +R LDL      T    
Sbjct: 265 ------------NLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHC 311

Query: 457 KGLDSLKKLTYLDISEC---YLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LE 510
             +     L  L+         +E + +    L  L++ +G      +  + + +   L 
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 511 DLGNSLKELRKLSIYVNN--NAIPIEKLSESLEKFKNL-------------LKLKIAWGA 555
            L    +EL  +++YV++  N   +E +   L+   +              L L     +
Sbjct: 372 ALAQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 556 GYSKCRNQEGNNEHNKKQE--DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL--ESLPN 611
               C+       + ++    D   +          GQ    +  + L       E L  
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSY--------IGQYSPNVRWMLLGYVGESDEGLME 482

Query: 612 WLSGL-NLRKLYIRGGQL--RSLQGDTHKKYSTVKVLRLRY--LNELNVNWRELQALFPD 666
           +  G  NL+KL +RG     R++      K  +++ L ++    +    +  ++   + +
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541

Query: 667 LEYLEKFNCPMIS 679
           +E +     P ++
Sbjct: 542 IELIPSRRVPEVN 554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487
           I +      N    R LDLR    +  +     +L +   +D S+  +     ++L    
Sbjct: 9   IEQAAQ-YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEI-----RKLDGFP 61

Query: 488 ELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNL 546
            L+ LK  LV     N++IC + + L  +L +L +L +  N+    + +L + L+   +L
Sbjct: 62  LLRRLKTLLV----NNNRICRIGEGLDQALPDLTELILTNNS----LVELGD-LDPLASL 112

Query: 547 LKLKI 551
             L  
Sbjct: 113 KSLTY 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLD 469
           +  N    R L L+G Y I  I +  A L     +D      + KL  G   L++L  L 
Sbjct: 14  QYTNAVRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLL 70

Query: 470 ISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNN 528
           ++   +         +L +L  L          N  +  L DL + L  L+ L  + +  
Sbjct: 71  VNNNRICRIGEGLDQALPDLTEL------ILTNN-SLVELGDL-DPLASLKSLTYLCILR 122

Query: 529 NAIPIEKLSE 538
           N  P+     
Sbjct: 123 N--PVTNKKH 130

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 7e-05
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 323 MDPLARLAVINSRKPEDLWCKWARLEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLK 382
           +D +  L  +  +   +L         L+      L + +         D       NL+
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKS-----LEIISGGLPDSVVEDILGSDLPNLE 222

Query: 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN---LS 439
           K   L L           ++   + L        L+ L +        +         L 
Sbjct: 223 K---LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 440 NLRVLDLRCCYY----LTKLPKGLDSLKKLTYLDISECYLIEYMPKELSS 485
            L  +D+            L   +D +K L ++++   YL + M KEL  
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 48/316 (15%), Positives = 85/316 (26%), Gaps = 76/316 (24%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
              L  +  L       +            +  ++ ++ L  L       I  +   ++ 
Sbjct: 38  EEQLATLTSLDCHNSSITD-----------MTGIEKLTGLTKLICTS-NNITTLD--LSQ 83

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV 497
            +NL  L       LT L   +  L KLTYL+     L +    +   L+ L   +  L 
Sbjct: 84  NTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT 140

Query: 498 T-DAKPNDKICTLEDLGNSLKELRKLS-------IYVNNNAIPIEKLSESLEKFKNLLKL 549
             D   N ++  L+   N       ++       +  + N I        + + K L +L
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT----ELDVSQNKLLNRL 196

Query: 550 KIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL 609
                         + +   N +                       L  LD     L  +
Sbjct: 197 NC------DTNNITKLDLNQNIQ-----------------------LTFLDCSSNKLTEI 227

Query: 610 PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQAL----F 664
              ++ L  L         L  L   T  K           L  L+    +L  +     
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSK-----------LTTLHCIQTDLLEIDLTHN 274

Query: 665 PDLEYLEKFNCPMISF 680
             L Y +   C  I  
Sbjct: 275 TQLIYFQAEGCRKIKE 290

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLD 469
           ++     L  L+      I ++   +     L  LD      LT++   +  L +LTY D
Sbjct: 186 DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFD 239

Query: 470 ISECYLIEYMPKELSSLSELQVLKGFLVT-DAKPNDKICTLEDLGN---------SLKEL 519
            S   L E     LS L+ L  ++  L+  D   N ++   +  G             +L
Sbjct: 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

Query: 520 RKLSIYVNNNAIPIEKLSESLEKFKNLLKL 549
             L          I +L   L +   L+ L
Sbjct: 300 YLLDCQAAG----ITEL--DLSQNPKLVYL 323

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKL 465
           L  L     L  L ++    ++ +    +  L  LR L +     L  +         +L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL 82

Query: 466 TYLDISECYLIEYMPKELSSLSELQVL 492
           + L++S   L     K +  LS LQ L
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQEL 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 39/335 (11%), Positives = 89/335 (26%), Gaps = 67/335 (20%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKEL------------KNMSALRLLSLQGV 425
             +L  ++ L L    N   +  E+     ++ L                  + + L   
Sbjct: 76  LESLSTLRTLDLNN--N---YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN- 129

Query: 426 YGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYL------- 475
             I  +        S ++ LDL+    +  +       S   L +L++   ++       
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 476 --------------IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRK 521
                         + +M  E  S + +  +        + N     L  +  +L+  + 
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI------SLRNNK----LVLIEKALRFSQN 238

Query: 522 L-SIYVNNNAIPIEKLSESLEKFKNLLKL------KIAWGAGYSKCRNQEGNNEHNKKQE 574
           L    +  N      L +   K + +  +      K+             G+      ++
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 575 DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLN-LRKLYIRGGQLRSLQG 633
             A        D     K +    L       E L          R++     Q R++  
Sbjct: 299 LPAPF-----ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353

Query: 634 DTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLE 668
               +      L  +    L+      +    +L+
Sbjct: 354 QVTLRKQAKITLEQKK-KALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 21/124 (16%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
            I EI     N +  ++  +     L +       S   +  LD+S   L +    +L+ 
Sbjct: 1   AIHEIK---QNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 486 LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKN 545
            ++L++L      +   N  +    DL + L  LR L   +NNN +      + L    +
Sbjct: 57  FTKLELL------NLSSN-VLYETLDLES-LSTLRTL--DLNNNYV------QELLVGPS 100

Query: 546 LLKL 549
           +  L
Sbjct: 101 IETL 104

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 35/300 (11%), Positives = 88/300 (29%), Gaps = 54/300 (18%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437
            ++   ++ L+L    N      +V+G     +LK       L L     +  +     +
Sbjct: 165 AASSDTLEHLNLQY--N---FIYDVKGQVVFAKLKT------LDLSSNK-LAFMGPEFQS 212

Query: 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYL-IEYMPKELSSLSELQVLKGFL 496
            + +  + LR    L  + K L   + L + D+         +    S    +Q +    
Sbjct: 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV---- 267

Query: 497 VTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG 556
                    +  L         +  L    +  A   E L         L+ LK      
Sbjct: 268 -----AKQTVKKLTGQNEEECTVPTL---GHYGAYCCEDLPAPF--ADRLIALK------ 311

Query: 557 YSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL 616
             +  +   + + ++ +  E E + +               ++D       ++ + ++  
Sbjct: 312 --RKEHALLSGQGSETERLECERENQAR-----------QREIDALKEQYRTVIDQVTLR 358

Query: 617 --NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674
                 L  +   L     +  + ++ +     + + ++     ELQ    +   L+   
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-----ELQHATEEQSPLQLLR 413

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 412 KNMSALRLLSLQGV-YGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDI 470
           +  S ++ L L        ++         L  L       LT +   L  L KL  L++
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLEL 71

Query: 471 SECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL-SIYVNNN 529
           S+  +   +         L  L      +   N KI  L  +   LK+L  L S+ + N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHL------NLSGN-KIKDLSTI-EPLKKLENLKSLDLFNC 123

Query: 530 AIPIEKLSE 538
              +  L++
Sbjct: 124 --EVTNLND 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 46/280 (16%)

Query: 355 TQLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNM 414
             +               FQ  W   ++ + + +L   +   +         F      +
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-------FTYSETAL 304

Query: 415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISEC 473
            +L +  ++    +    +  +  + + +  L        +      S    T+L+ ++ 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKML-SISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 474 YLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN-NAIP 532
              + + +  S+L  LQ L           + +     +    K +  L     + N++ 
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQ-------RNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 533 IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK 592
                 +    +++L L ++                 N                  F   
Sbjct: 417 SHAYDRTCAWAESILVLNLS----------------SNMLT------------GSVFRCL 448

Query: 593 DRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSL 631
              ++ LDLH   + S+P  ++ L  L++L +   QL+S+
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYG--IREIPSSI 435
           F  +  ++ L L    N   H   +    F     ++ AL +L L   Y   I  +  + 
Sbjct: 84  FVPVPNLRYLDLSS--N---HLHTLDEFLF----SDLQALEVLLL---YNNHIVVVDRNA 131

Query: 436 -ANLSNLRVLDLRCCYYLTKLPKG----LDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490
             +++ L+ L L     +++ P       + L KL  LD+S   L +    +L  L    
Sbjct: 132 FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 491 VL 492
             
Sbjct: 191 KN 192

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 386 VLHLG---RWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLR 442
           +L  G   R+    +   +           +   ++ +       +      +  L  + 
Sbjct: 31  LLRCGAMVRYHGQQRWQKDYNHLPTGPL--DKYKIQAIDATDSCIMSIGFDHMEGLQYVE 88

Query: 443 VLDLRCCYYLT-----KLPKGLDSLKKLTYLDISECYLI-EYMPKELSSLSELQVL 492
            + L  C+Y+      +L +  +  K +  ++I  C  + +     L     L+ L
Sbjct: 89  KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYL 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 45/228 (19%), Positives = 70/228 (30%), Gaps = 60/228 (26%)

Query: 421 SLQGVY----GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYL 475
           S   V      +  +P  +    +  +L L     L       L    +LT L++     
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 476 IEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEK 535
                 EL+ L     L      D   N ++ +L  LG +L  L  L +  N     +  
Sbjct: 66  ------ELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR----LTS 114

Query: 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGL----DGTFGQ 591
           L       + L +L+  +  G     N+                     L     G    
Sbjct: 115 LPLGA--LRGLGELQELYLKG-----NE---------------------LKTLPPGLL-- 144

Query: 592 KDRL--LEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDT 635
                 LEKL L    L  LP   L+GL NL  L ++   L ++    
Sbjct: 145 -TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	704
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.9
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.82
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.45
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.36
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.24

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=227.22  Aligned_cols=296  Identities=18%  Similarity=0.148  Sum_probs=211.8

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~  437 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.         ..|..|.++++|++|+|++|. +..+|. .+.+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  102 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA---------VEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG  102 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE---------eChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence            56666666777777777789999999999999997763         236778999999999999984 667765 4789


Q ss_pred             cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391          438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK  517 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~  517 (704)
                      +++|++|+|++|......|..+..+++|++|++++|.+....|..+..+++|++|      ++++|.+....+.....++
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~l~~l~  176 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL------TLEKCNLTSIPTEALSHLH  176 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE------EEESCCCSSCCHHHHTTCT
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE------ECCCCcCcccChhHhcccC
Confidence            9999999999987766777889999999999999999877777789999999999      5888888877665333899


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccce
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLL  596 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L  596 (704)
                      +|+.|++++|.+....+   ..+..+++|+.|++++|......+........+..+. +..+ ....+|. .+..+ ++|
T Consensus       177 ~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-l~~n-~l~~~~~~~~~~l-~~L  250 (477)
T 2id5_A          177 GLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS-ITHC-NLTAVPYLAVRHL-VYL  250 (477)
T ss_dssp             TCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE-EESS-CCCSCCHHHHTTC-TTC
T ss_pred             CCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccccCcccccCccccEEE-CcCC-cccccCHHHhcCc-ccc
Confidence            99999999998765333   4688899999999999876554443322222111111 1111 1223332 33444 477


Q ss_pred             eEEEEEcCCCCCCcc-cCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391          597 EKLDLHCFPLESLPN-WLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN  674 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~-~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~  674 (704)
                      +.|+|++|.+..++. .+..+ +|+.|+|++|.+..++...+..+++|+.|+|+++..-.+....+ ..+++|+.|++.+
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~  329 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLILDS  329 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEECCS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc-CCCcccCEEEccC
Confidence            777777777766654 34444 77777777777777666666667778888877764332222222 4567888888888


Q ss_pred             CCC
Q 041391          675 CPM  677 (704)
Q Consensus       675 C~~  677 (704)
                      +|-
T Consensus       330 N~l  332 (477)
T 2id5_A          330 NPL  332 (477)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=9.5e-24  Score=244.69  Aligned_cols=259  Identities=16%  Similarity=0.195  Sum_probs=137.6

Q ss_pred             hcCCCCCccEEEcCCCCCccc----chhh----hccchhhHhcc--CCcccceeeeeccCCCCCCchhhhccccCcEEee
Q 041391          377 WFSNLKKVKVLHLGRWKNSAK----HFVE----VQGSKFLKELK--NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDL  446 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~----~~~~----~~~~~lp~~l~--~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdL  446 (704)
                      .|.++++|++|+|++|.+++.    .|+.    +....+|..++  ++++|++|+|++|...+.+|..++++++|++|+|
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            466667777777777665531    0000    00001566666  6777777777776666666666667777777777


Q ss_pred             eccc-CCC-cCCcccccc------CCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          447 RCCY-YLT-KLPKGLDSL------KKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       447 s~c~-~l~-~lP~~i~~L------~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      ++|. ..+ .+|..++.+      ++|++|++++|.+. .+|.  .++.+++|++|      ++++|.+.+.++.+. .+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L------~L~~N~l~g~ip~~~-~l  352 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML------ECLYNQLEGKLPAFG-SE  352 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE------ECCSCCCEEECCCCE-EE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE------eCcCCcCccchhhhC-CC
Confidence            7665 444 566666665      66777777766655 6666  56666666666      466666664444555 66


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCC-ccEEEEEecCCCCCCCCcccccc--cchhhHhhHhhhcCCCCCCccc---
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKN-LLKLKIAWGAGYSKCRNQEGNNE--HNKKQEDEAETQGKGGLDGTFG---  590 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~~~~~---  590 (704)
                      ++|+.|++++|.+.    .++..+..+++ |+.|++++|.+. ..+.......  .+..+ .+..+...+.+|..+.   
T Consensus       353 ~~L~~L~L~~N~l~----~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          353 IKLASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI-DFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             EEESEEECCSSEEE----ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE-ECCSSCTTTTTTCSSCTTC
T ss_pred             CCCCEEECCCCccc----cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE-ECcCCcCCCcchhhhcccc
Confidence            66666666666554    22244566666 666666666654 3332211111  11111 1122222333333333   


Q ss_pred             ----ccccceeEEEEEcCCCCCCcccCCC-C-CeeEEEEEcCCCCCcCCCccCCCC-------CcCEEecCCC
Q 041391          591 ----QKDRLLEKLDLHCFPLESLPNWLSG-L-NLRKLYIRGGQLRSLQGDTHKKYS-------TVKVLRLRYL  650 (704)
Q Consensus       591 ----~lp~~L~~L~Ls~~~l~~lP~~l~~-l-~L~~L~Ls~n~l~~lp~~~~~~f~-------~L~~L~L~~l  650 (704)
                          .+ .+|+.|+|++|.+..+|..+.. + +|++|+|++|.+..+|........       +|+.|+|+++
T Consensus       427 ~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          427 PTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             SSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             cccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence                22 2555555555555555544322 2 555555555555555544333222       5555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=9e-23  Score=226.50  Aligned_cols=308  Identities=17%  Similarity=0.120  Sum_probs=180.8

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      .+++.+....+.+....+..|.++++|++|++++|.+...        --|..|..+++|++|+|++|......|..+++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--------i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  101 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--------IRNNTFRGLSSLIILKLDYNQFLQLETGAFNG  101 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE--------ECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce--------ECcccccccccCCEEeCCCCccCccChhhccC
Confidence            3556666666666665566677888888888887755310        11355777778888888877544444667777


Q ss_pred             cccCcEEeeecccCCCcCCcc--ccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhh-HH
Q 041391          438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLED-LG  513 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~--i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~  513 (704)
                      +++|++|+|++|...+.+|..  +..+++|++|++++|.+.+..|.. ++.+++|++|      ++++|.+.+..+. +.
T Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A          102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL------DLTFNKVKSICEEDLL  175 (455)
T ss_dssp             CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE------ECTTCCBSCCCTTTSG
T ss_pred             cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE------eCCCCcccccChhhhh
Confidence            778888888777555544444  777777888888777766655655 6777777777      4666665544321 11


Q ss_pred             ---------------------------------hCCCCCcEEEEEeeCCCCchhhHHHHhccC-----------------
Q 041391          514 ---------------------------------NSLKELRKLSIYVNNNAIPIEKLSESLEKF-----------------  543 (704)
Q Consensus       514 ---------------------------------~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l-----------------  543 (704)
                                                       ..+++|+.|++++|.+.+..+.........                 
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence                                             033567788888777654433222111111                 


Q ss_pred             -------------------CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcC
Q 041391          544 -------------------KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCF  604 (704)
Q Consensus       544 -------------------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~  604 (704)
                                         ++|+.|++++|.+....+........+..+ .+..+...+..|..+..+ ++|++|+|++|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N  333 (455)
T 3v47_A          256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL-TLAQNEINKIDDNAFWGL-THLLKLNLSQN  333 (455)
T ss_dssp             TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE-ECTTSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred             cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE-ECCCCcccccChhHhcCc-ccCCEEECCCC
Confidence                               345555555555433222221111111111 111222222234445555 37777777777


Q ss_pred             CCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391          605 PLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       605 ~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP  682 (704)
                      .+..+ |.++..+ +|++|+|++|.+..++...+..+++|+.|+|+++..-.+... ....+++|+.|++.+|+--..+|
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence            77655 4455556 777777777777766555556677778887777543322111 11467788888888876655555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=6.9e-23  Score=237.46  Aligned_cols=301  Identities=13%  Similarity=0.115  Sum_probs=213.6

Q ss_pred             ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCC-CcccchhhhccchhhHhccCC------cccceeeeeccCCC
Q 041391          356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWK-NSAKHFVEVQGSKFLKELKNM------SALRLLSLQGVYGI  428 (704)
Q Consensus       356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~-l~~~~~~~~~~~~lp~~l~~L------~~Lr~L~Ls~n~~l  428 (704)
                      ....++.+....+.+....+..|.++++|++|++++|. +++        ..+|..++.+      ++|++|+|++|. +
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~--------~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l  317 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG--------EQLKDDWQALADAPVGEKIQIIYIGYNN-L  317 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH--------HHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc--------ccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence            44566666666666555556678999999999999996 542        1467777665      899999999985 5


Q ss_pred             CCCch--hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCC-cceecccccccCCCCCC
Q 041391          429 REIPS--SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE-LQVLKGFLVTDAKPNDK  505 (704)
Q Consensus       429 ~~lP~--~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~-L~~L~~~~~~~ls~n~l  505 (704)
                      ..+|.  .++++++|++|++++|...+.+| .++.+++|++|++++|.+. .+|..++.+++ |++|      ++++|.+
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L------~Ls~N~l  389 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL------SFAHNKL  389 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE------ECCSSCC
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE------EccCCcC
Confidence            58888  89999999999999987666888 8888999999999999866 78888888888 9999      5888887


Q ss_pred             ccchhhHHhCC--CCCcEEEEEeeCCCCchhhHHHHhc-------cCCCccEEEEEecCCCCCCCCcccc-cccchhhHh
Q 041391          506 ICTLEDLGNSL--KELRKLSIYVNNNAIPIEKLSESLE-------KFKNLLKLKIAWGAGYSKCRNQEGN-NEHNKKQED  575 (704)
Q Consensus       506 ~~~~~~l~~~L--~~L~~L~L~~n~~~~~~~~l~~~L~-------~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~~l~~  575 (704)
                      ...+..+. .+  ++|+.|++++|.+.+..+   ..+.       .+++|+.|++++|.+. ..+..... ...+..+ .
T Consensus       390 ~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p---~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L-~  463 (636)
T 4eco_A          390 KYIPNIFD-AKSVSVMSAIDFSYNEIGSVDG---KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSI-N  463 (636)
T ss_dssp             SSCCSCCC-TTCSSCEEEEECCSSCTTTTTT---CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEE-E
T ss_pred             cccchhhh-hcccCccCEEECcCCcCCCcch---hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEE-E
Confidence            74444333 43  378888888888776544   3444       6678888888888866 33332221 1112111 1


Q ss_pred             hHhhhcCCCCCCccccccc-------ceeEEEEEcCCCCCCcccCC--CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEE
Q 041391          576 EAETQGKGGLDGTFGQKDR-------LLEKLDLHCFPLESLPNWLS--GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL  645 (704)
Q Consensus       576 ~~~~~~~~~l~~~~~~lp~-------~L~~L~Ls~~~l~~lP~~l~--~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L  645 (704)
                      +..+.. ..+|........       +|+.|+|++|.+..+|..+.  .+ +|+.|+|++|++..+|.... .+++|+.|
T Consensus       464 Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L  541 (636)
T 4eco_A          464 LMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGF  541 (636)
T ss_dssp             CCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCSSCCEE
T ss_pred             CCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh-cCCCCCEE
Confidence            122222 245554433222       89999999999999998886  66 99999999999988877655 48999999


Q ss_pred             ecCCCccccccccccc-------CcCCCccEEeeecCCCCCCCCCC
Q 041391          646 RLRYLNELNVNWRELQ-------ALFPDLEYLEKFNCPMISFFPCD  684 (704)
Q Consensus       646 ~L~~l~~L~l~~~~l~-------~~~p~L~~L~i~~C~~L~~lP~~  684 (704)
                      +|+++..+  +.|.+.       ..+++|+.|++.+| .++.+|..
T Consensus       542 ~Ls~N~~l--s~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~  584 (636)
T 4eco_A          542 GIRNQRDA--QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK  584 (636)
T ss_dssp             ECCSCBCT--TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred             ECCCCccc--ccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence            99765422  122111       45788889998888 45888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2.6e-23  Score=219.67  Aligned_cols=255  Identities=19%  Similarity=0.182  Sum_probs=153.8

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeec-cCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG-VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~-n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      .+++.|+|++|.+++.       ..+|..|..+++|++|+|++ |...+.+|..++++++|++|+|++|...+.+|..+.
T Consensus        50 ~~l~~L~L~~~~l~~~-------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP-------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSC-------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             ceEEEEECCCCCccCC-------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence            4566777777655420       03456667777777777774 545556666677777777777777655556676677


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-hhHHhCCC-CCcEEEEEeeCCCCchhhHHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLK-ELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~~~L~-~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      ++++|++|++++|.+.+.+|..++.+++|++|      ++++|.+.+.+ ..+. .++ +|+.|++++|.+.+.++   .
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L------~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~---~  192 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGI------TFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIP---P  192 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEE------ECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECC---G
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeE------ECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCC---h
Confidence            77777777777776666666667777777777      46666666433 3455 665 67777777766554333   3


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-N  617 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~  617 (704)
                      .+..++ |+.|++++|.+..                         ..|..+..+ ++|+.|+|++|.+...+..+..+ +
T Consensus       193 ~~~~l~-L~~L~Ls~N~l~~-------------------------~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~  245 (313)
T 1ogq_A          193 TFANLN-LAFVDLSRNMLEG-------------------------DASVLFGSD-KNTQKIHLAKNSLAFDLGKVGLSKN  245 (313)
T ss_dssp             GGGGCC-CSEEECCSSEEEE-------------------------CCGGGCCTT-SCCSEEECCSSEECCBGGGCCCCTT
T ss_pred             HHhCCc-ccEEECcCCcccC-------------------------cCCHHHhcC-CCCCEEECCCCceeeecCcccccCC
Confidence            455554 7777776665321                         123334444 36777777777665544445555 7


Q ss_pred             eeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          618 LRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       618 L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      |++|+|++|.+. .+|. ....+++|+.|+|+++..-. ..... +.+++|+.|++.+++.+...|.
T Consensus       246 L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred             CCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccc-cCCCC-ccccccChHHhcCCCCccCCCC
Confidence            777777777765 3333 23446677777776654321 11111 4567777777777776655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=8e-23  Score=242.15  Aligned_cols=281  Identities=20%  Similarity=0.151  Sum_probs=201.3

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      +++|++|++++|.+++         .+|..++.+++|++|+|++|...+.+|..++++++|++|++++|...+.+|..++
T Consensus       393 ~~~L~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  463 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTG---------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM  463 (768)
T ss_dssp             TCCCCEEECCSSEEEE---------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cCCccEEECCCCcccc---------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            5667777777775542         4678889999999999999877678898899999999999999988888999999


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      .+++|++|++++|.+.+.+|..++.+++|++|      ++++|.+.+.++ .+. .+++|+.|++++|.+.+.++   ..
T Consensus       464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L------~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p---~~  533 (768)
T 3rgz_A          464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWI------SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIP---AE  533 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECC---GG
T ss_pred             CCCCceEEEecCCcccCcCCHHHhcCCCCCEE------EccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCC---HH
Confidence            99999999999999888899999999999999      599999887665 455 89999999999998876555   67


Q ss_pred             hccCCCccEEEEEecCCCCCCCCcccccccchhh-------------------------------------H--------
Q 041391          540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQ-------------------------------------E--------  574 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l-------------------------------------~--------  574 (704)
                      +..+++|+.|++++|.+...+|............                                     .        
T Consensus       534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (768)
T 3rgz_A          534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC  613 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred             HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence            8899999999999998765555443221110000                                     0        


Q ss_pred             hhHhhhcCCCCCCcccccccceeEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCc
Q 041391          575 DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       575 ~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      ....+...+.+|..+..+ ++|+.|+|++|.+. .+|..+..+ +|+.|+|++|.+. .+|.. ...+++|+.|+|+++.
T Consensus       614 ~l~~~~~~g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          614 NITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CTTSCEEEEECCCSCSSS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred             ccccceecccCchhhhcc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCc
Confidence            000112223344455555 47888888888774 677777777 8888888888886 34443 3457788888887754


Q ss_pred             ccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          652 ELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       652 ~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      .-. ........+++|+.|++++|+--..+|.
T Consensus       692 l~g-~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          692 LDG-RIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CEE-CCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             ccC-cCChHHhCCCCCCEEECcCCcccccCCC
Confidence            322 1111114566777777777643334443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=9.9e-23  Score=241.56  Aligned_cols=170  Identities=20%  Similarity=0.260  Sum_probs=120.2

Q ss_pred             hhhcCCCCCccEEEcCCCCCcccc----hh----hhccchhhHhcc--CCcccceeeeeccCCCCCCchhhhccccCcEE
Q 041391          375 SKWFSNLKKVKVLHLGRWKNSAKH----FV----EVQGSKFLKELK--NMSALRLLSLQGVYGIREIPSSIANLSNLRVL  444 (704)
Q Consensus       375 ~~~f~~l~~Lr~L~L~~n~l~~~~----~~----~~~~~~lp~~l~--~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~L  444 (704)
                      |..|.++++|++|+|++|.+++..    +.    ......+|..++  ++++|++|+|++|...+.+|..+++|++|++|
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            345777888888888888776410    00    000012677766  88888888888887777888888888888888


Q ss_pred             eeeccc-CCC-cCCccccccC-------CCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhhHH
Q 041391          445 DLRCCY-YLT-KLPKGLDSLK-------KLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLEDLG  513 (704)
Q Consensus       445 dLs~c~-~l~-~lP~~i~~L~-------~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~  513 (704)
                      +|++|. ..+ .+|..++.++       +|++|++++|.+. .+|.  .++++++|++|      ++++|.+. .++.+.
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L------~Ls~N~l~-~lp~~~  592 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL------DCVHNKVR-HLEAFG  592 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE------ECTTSCCC-BCCCCC
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE------ECCCCCcc-cchhhc
Confidence            888876 444 5777776665       8888888888766 7777  77888888888      57777776 445666


Q ss_pred             hCCCCCcEEEEEeeCCCCchhhHHHHhccCCC-ccEEEEEecCCC
Q 041391          514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKN-LLKLKIAWGAGY  557 (704)
Q Consensus       514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~-L~~L~Ls~n~l~  557 (704)
                       .+++|+.|++++|.+. .++   ..+..+++ |+.|+|++|.+.
T Consensus       593 -~L~~L~~L~Ls~N~l~-~lp---~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          593 -TNVKLTDLKLDYNQIE-EIP---EDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             -TTSEESEEECCSSCCS-CCC---TTSCEECTTCCEEECCSSCCC
T ss_pred             -CCCcceEEECcCCccc-cch---HHHhhccccCCEEECcCCCCC
Confidence             7788888888887765 333   45777777 888888877765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=3.2e-23  Score=219.00  Aligned_cols=248  Identities=19%  Similarity=0.164  Sum_probs=203.8

Q ss_pred             ceeeeeecccCCCCC--cchhhcCCCCCccEEEcCC-CCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh
Q 041391          358 LTVSALVNVSEQFPD--FQSKWFSNLKKVKVLHLGR-WKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS  434 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~--~~~~~f~~l~~Lr~L~L~~-n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~  434 (704)
                      .+++.+......+..  ..+..|.++++|++|++++ |.+++         .+|..|+.+++|++|+|++|...+.+|..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG---------PIPPAIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES---------CCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc---------cCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence            356666666666655  4566799999999999995 76542         56888999999999999999665689999


Q ss_pred             hhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC-CcceecccccccCCCCCCccchhhHH
Q 041391          435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS-ELQVLKGFLVTDAKPNDKICTLEDLG  513 (704)
Q Consensus       435 l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~-~L~~L~~~~~~~ls~n~l~~~~~~l~  513 (704)
                      +.++++|++|+|++|...+.+|..+..+++|++|++++|.+.+.+|..++.++ +|++|      ++++|.+.+.++...
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L------~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM------TISRNRLTGKIPPTF  194 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE------ECCSSEEEEECCGGG
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE------ECcCCeeeccCChHH
Confidence            99999999999999987779999999999999999999998889999999998 99999      699999886655433


Q ss_pred             hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391          514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD  593 (704)
Q Consensus       514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp  593 (704)
                      ..++ |+.|++++|.+.+..+   ..+..+++|+.|++++|.+...                         + +.+..+ 
T Consensus       195 ~~l~-L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~-------------------------~-~~~~~l-  243 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEGDAS---VLFGSDKNTQKIHLAKNSLAFD-------------------------L-GKVGLS-  243 (313)
T ss_dssp             GGCC-CSEEECCSSEEEECCG---GGCCTTSCCSEEECCSSEECCB-------------------------G-GGCCCC-
T ss_pred             hCCc-ccEEECcCCcccCcCC---HHHhcCCCCCEEECCCCceeee-------------------------c-Cccccc-
Confidence            2776 9999999998875444   5788999999999999985321                         1 123334 


Q ss_pred             cceeEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCccc
Q 041391          594 RLLEKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNEL  653 (704)
Q Consensus       594 ~~L~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L  653 (704)
                      ++|++|+|++|.+. .+|.++..+ +|++|+|++|++. .+|..  ..+++|+.|.+.+++.+
T Consensus       244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEE
T ss_pred             CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCc
Confidence            59999999999986 889999888 9999999999996 55554  55888888888887655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.4e-22  Score=238.22  Aligned_cols=303  Identities=14%  Similarity=0.110  Sum_probs=198.2

Q ss_pred             ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCC-CcccchhhhccchhhHhccCCc-------ccceeeeeccCC
Q 041391          356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWK-NSAKHFVEVQGSKFLKELKNMS-------ALRLLSLQGVYG  427 (704)
Q Consensus       356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~-l~~~~~~~~~~~~lp~~l~~L~-------~Lr~L~Ls~n~~  427 (704)
                      ...+++.+....+.+....|..|.++++|++|+|++|. +++        ..+|..++.+.       +|++|+|++|. 
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg--------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-  559 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA--------AQLKADWTRLADDEDTGPKIQIFYMGYNN-  559 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH--------HHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc--------ccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence            34456666655555555555678888888888888886 542        13455554444       88888888874 


Q ss_pred             CCCCch--hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCC-cceecccccccCCCCC
Q 041391          428 IREIPS--SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE-LQVLKGFLVTDAKPND  504 (704)
Q Consensus       428 l~~lP~--~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~-L~~L~~~~~~~ls~n~  504 (704)
                      +..+|.  .++++++|++|+|++|... .+| .++.+++|++|++++|.+. .+|..+..+++ |++|      ++++|.
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L------~Ls~N~  630 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL------GFSHNK  630 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE------ECCSSC
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE------ECcCCC
Confidence            447887  7888888888888887544 777 7888888888888888765 77777888887 8888      577777


Q ss_pred             CccchhhHHhCCC--CCcEEEEEeeCCCCchhhHHHHhc--cCCCccEEEEEecCCCCCCCCccc-ccccchhhHhhHhh
Q 041391          505 KICTLEDLGNSLK--ELRKLSIYVNNNAIPIEKLSESLE--KFKNLLKLKIAWGAGYSKCRNQEG-NNEHNKKQEDEAET  579 (704)
Q Consensus       505 l~~~~~~l~~~L~--~L~~L~L~~n~~~~~~~~l~~~L~--~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~~l~~~~~~  579 (704)
                      +...+..+. .+.  +|+.|++++|.+.+.++.++..+.  .+++|+.|+|++|.+. ..+.... ....+..+ .+..+
T Consensus       631 L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L-~Ls~N  707 (876)
T 4ecn_A          631 LKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI-ILSNN  707 (876)
T ss_dssp             CCSCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE-ECCSC
T ss_pred             CCcCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE-ECCCC
Confidence            664333333 333  377777777777654443332233  2346777777777765 2222211 11111111 11112


Q ss_pred             hcCCCCCCcccccc-------cceeEEEEEcCCCCCCcccCC--CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391          580 QGKGGLDGTFGQKD-------RLLEKLDLHCFPLESLPNWLS--GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY  649 (704)
Q Consensus       580 ~~~~~l~~~~~~lp-------~~L~~L~Ls~~~l~~lP~~l~--~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~  649 (704)
                       ....+|..+....       ++|+.|+|++|.+..+|..+.  .+ +|+.|+|++|.+..+|.... .+++|+.|+|++
T Consensus       708 -~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~  785 (876)
T 4ecn_A          708 -LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRH  785 (876)
T ss_dssp             -CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCTTCCEEECCC
T ss_pred             -cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh-cCCCCCEEECCC
Confidence             2224555443322       289999999999999998886  66 99999999999988876655 588999999987


Q ss_pred             Cccccccccccc-------CcCCCccEEeeecCCCCCCCCCC
Q 041391          650 LNELNVNWRELQ-------ALFPDLEYLEKFNCPMISFFPCD  684 (704)
Q Consensus       650 l~~L~l~~~~l~-------~~~p~L~~L~i~~C~~L~~lP~~  684 (704)
                      ++.+  +.+.+.       ..+++|+.|++.+| .+..+|..
T Consensus       786 N~~l--s~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~  824 (876)
T 4ecn_A          786 QRDA--EGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK  824 (876)
T ss_dssp             CBCT--TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred             CCCc--ccccccccChHHHhcCCCCCEEECCCC-CCCccCHh
Confidence            5532  222221       45788999999988 45888874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=2.3e-22  Score=238.14  Aligned_cols=280  Identities=20%  Similarity=0.203  Sum_probs=216.2

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+....+..|.++++|++|++++|.+++         .+|..++.+++|++|+|++|...+.+|..++.+
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  465 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV  465 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC---------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            45555554554444456678999999999999997753         467889999999999999998777899999999


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~  517 (704)
                      ++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..++.+++|++|      ++++|.+.+.++ .+. .++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L------~L~~N~l~~~~p~~l~-~l~  538 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL------KLSNNSFSGNIPAELG-DCR  538 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSCCEEECCGGGG-GCT
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE------ECCCCcccCcCCHHHc-CCC
Confidence            999999999998888999999999999999999999998999999999999999      699999987665 566 999


Q ss_pred             CCcEEEEEeeCCCCchhhHHH-----------------------------------------------------------
Q 041391          518 ELRKLSIYVNNNAIPIEKLSE-----------------------------------------------------------  538 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~-----------------------------------------------------------  538 (704)
                      +|+.|++++|.+.+.+|....                                                           
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            999999999988765552111                                                           


Q ss_pred             --------HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCC-CC
Q 041391          539 --------SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLE-SL  609 (704)
Q Consensus       539 --------~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~-~l  609 (704)
                              .+..+++|+.|+|++|.                         ..+.+|..+..+ ++|+.|+|++|.+. .+
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~-------------------------l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNM-------------------------LSGYIPKEIGSM-PYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSC-------------------------CBSCCCGGGGGC-TTCCEEECCSSCCCSCC
T ss_pred             eecccCchhhhccccccEEECcCCc-------------------------ccccCCHHHhcc-ccCCEEeCcCCccCCCC
Confidence                    11223344444444444                         455678888888 49999999999986 89


Q ss_pred             cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391          610 PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       610 P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP  682 (704)
                      |..+..+ +|+.|+|++|++..........+++|+.|+|++++--.  .-.-.+.|..+..+.+.+||.|...|
T Consensus       673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG--PIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE--ECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc--cCCCchhhccCCHHHhcCCchhcCCC
Confidence            9999999 99999999999964433445568899999998865321  00111345556666677877665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=4.2e-22  Score=229.44  Aligned_cols=303  Identities=16%  Similarity=0.098  Sum_probs=215.1

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+.+..|..+++|++|++++|.++          .+|..+..+++|++|++++|......|..+.++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS----------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS----------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC----------CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            5667777777777777778899999999999999765          567788899999999999985444446678899


Q ss_pred             ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCccccccc--CccCCCCCCcceecccccccCCCCCCccchhhHHhC
Q 041391          439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYM--PKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNS  515 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~l--P~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~  515 (704)
                      ++|++|++++|...+.+|.. +..+++|++|++++|.+.+..  |..++.+++|++|      ++++|.+....+.....
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL------NLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE------ECCSCSCEEECTTTTTT
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE------ECCCCcCCcCCHHHhcC
Confidence            99999999998776677655 888999999999999876554  6678889999999      58888877665543338


Q ss_pred             CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC---CCCCccccc
Q 041391          516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG---GLDGTFGQK  592 (704)
Q Consensus       516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~l  592 (704)
                      +++|+.|++++|.+.+..+.  ..+..+++|+.|++++|.+....+........+..+. +..+...+   ..+..+..+
T Consensus       399 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQ--SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN-LQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTC--CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE-CTTCBCGGGEECSSCGGGGC
T ss_pred             CccCCeEECCCCcCCCcccc--hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE-CCCCCCCccccccchhhccC
Confidence            88999999988887644321  3477888899999988886544333222222222221 11111111   112345555


Q ss_pred             ccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEE
Q 041391          593 DRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYL  670 (704)
Q Consensus       593 p~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L  670 (704)
                       ++|+.|+|++|.+..+ |.++..+ +|++|+|++|++..++......++.| .|+|+++....+....+ ..+++|+.|
T Consensus       476 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L  552 (606)
T 3t6q_A          476 -GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PILSQQRTI  552 (606)
T ss_dssp             -TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH-HHHHTSSEE
T ss_pred             -CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc-ccCCCCCEE
Confidence             4889999998888766 4666667 89999999998877766666677888 88888865443222112 457889999


Q ss_pred             eeecCCCCCCCCC
Q 041391          671 EKFNCPMISFFPC  683 (704)
Q Consensus       671 ~i~~C~~L~~lP~  683 (704)
                      ++.+||-...++.
T Consensus       553 ~l~~N~~~c~c~~  565 (606)
T 3t6q_A          553 NLRQNPLDCTCSN  565 (606)
T ss_dssp             ECTTCCEECSGGG
T ss_pred             eCCCCCccccCCc
Confidence            9999976555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=2.5e-21  Score=210.69  Aligned_cols=288  Identities=16%  Similarity=0.089  Sum_probs=162.0

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+......+..+.+..|..+++|++|++++|.++.+         .+..|..+++|++|+|++|......|..++++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCccccc---------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            444444444444455555667777788888877766421         13467777777788887775433334556777


Q ss_pred             ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~  517 (704)
                      ++|++|+|++| .+..+|.. +.++++|++|++++|.+....|..++.+++|++|      ++++|.+....  +. .++
T Consensus       117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~--~~-~l~  186 (390)
T 3o6n_A          117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL------QLSSNRLTHVD--LS-LIP  186 (390)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE------ECCSSCCSBCC--GG-GCT
T ss_pred             CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE------ECCCCcCCccc--cc-ccc
Confidence            77788877776 44566655 4677777788777777665555567777777777      46666655432  22 334


Q ss_pred             CCcEEEEEeeCCCCch---------------hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcC
Q 041391          518 ELRKLSIYVNNNAIPI---------------EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGK  582 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~---------------~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~  582 (704)
                      +|+.|++++|.+....               ..++  ....++|+.|++++|.+...  +.......+..+ .+..+...
T Consensus       187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~Ls~n~l~  261 (390)
T 3o6n_A          187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV-DLSYNELE  261 (390)
T ss_dssp             TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCC
T ss_pred             ccceeecccccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCccc--HHHcCCCCccEE-ECCCCcCC
Confidence            4444444333322100               0000  01123455555555544321  000000000000 01111111


Q ss_pred             CCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc
Q 041391          583 GGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ  661 (704)
Q Consensus       583 ~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~  661 (704)
                      +..|..+..+ ++|+.|+|++|.+..+|..+..+ +|++|+|++|++..+|... ..+++|+.|+|+++..-.+.    .
T Consensus       262 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~----~  335 (390)
T 3o6n_A          262 KIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK----L  335 (390)
T ss_dssp             EEESGGGTTC-SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC----C
T ss_pred             CcChhHcccc-ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC----c
Confidence            1223445455 37888888888777777666656 7888888888777776553 34677888888776543321    2


Q ss_pred             CcCCCccEEeeecCC
Q 041391          662 ALFPDLEYLEKFNCP  676 (704)
Q Consensus       662 ~~~p~L~~L~i~~C~  676 (704)
                      ..+++|+.|++.+|+
T Consensus       336 ~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          336 STHHTLKNLTLSHND  350 (390)
T ss_dssp             CTTCCCSEEECCSSC
T ss_pred             hhhccCCEEEcCCCC
Confidence            467788888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.6e-21  Score=224.32  Aligned_cols=282  Identities=16%  Similarity=0.102  Sum_probs=164.3

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+++..|..+++|++|+|++|.++.+         .|..|+.+++|++|+|++|......|..++++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC---------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            344444444445555556677788888888888876532         23467788888888888875444444556888


Q ss_pred             ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~  517 (704)
                      ++|++|+|++| .+..+|.. ++++++|++|++++|.+.+..|..++.+++|++|      ++++|.+.+..  +. .++
T Consensus       123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~--~~-~l~  192 (597)
T 3oja_B          123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL------QLSSNRLTHVD--LS-LIP  192 (597)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE------ECTTSCCSBCC--GG-GCT
T ss_pred             CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE------ECcCCCCCCcC--hh-hhh
Confidence            88888888887 44456555 4788888888888888776666678888888888      47777766542  23 445


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccC---------------------CCccEEEEEecCCCCCCCCcccccccchhhHhh
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKF---------------------KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDE  576 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l---------------------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~  576 (704)
                      +|+.|++++|.+.+        +...                     ++|+.|+|++|.+...  ........+..+ .+
T Consensus       193 ~L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L-~L  261 (597)
T 3oja_B          193 SLFHANVSYNLLST--------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV-DL  261 (597)
T ss_dssp             TCSEEECCSSCCSE--------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEE-EC
T ss_pred             hhhhhhcccCcccc--------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEE-EC
Confidence            55555555554331        1111                     2333333333332210  000000000000 01


Q ss_pred             HhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccc
Q 041391          577 AETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNV  655 (704)
Q Consensus       577 ~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l  655 (704)
                      ..+...+..|..+..+ ++|+.|+|++|.+..+|..+..+ +|+.|+|++|.+..+|... ..+++|+.|+|+++....+
T Consensus       262 s~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          262 SYNELEKIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CSSCCCEEESGGGTTC-SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCC
T ss_pred             CCCccCCCCHHHhcCc-cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCc
Confidence            1111112234444455 36777777777776666666555 7777777777776666544 3467777777776653322


Q ss_pred             ccccccCcCCCccEEeeecCC
Q 041391          656 NWRELQALFPDLEYLEKFNCP  676 (704)
Q Consensus       656 ~~~~l~~~~p~L~~L~i~~C~  676 (704)
                      .    ...+++|+.|++.+|+
T Consensus       340 ~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          340 K----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             C----CCTTCCCSEEECCSSC
T ss_pred             C----hhhcCCCCEEEeeCCC
Confidence            1    2456777777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=6.6e-21  Score=202.51  Aligned_cols=266  Identities=15%  Similarity=0.133  Sum_probs=167.8

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.         ..|..|..+++|++|+|++| .++.+|..+.  
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--  120 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---------ISPGAFAPLVKLERLYLSKN-QLKELPEKMP--  120 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---------BCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---------eCHHHhcCCCCCCEEECCCC-cCCccChhhc--
Confidence            34455555555655555567777777777777776652         12566777777777777776 4566666554  


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCccccc--ccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIE--YMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~--~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      ++|++|++++|......+..+.++++|++|++++|.+..  ..+..+..+++|++|      ++++|.+...+..+.   
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L------~l~~n~l~~l~~~~~---  191 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI------RIADTNITTIPQGLP---  191 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE------ECCSSCCCSCCSSCC---
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE------ECCCCccccCCcccc---
Confidence            677777777765444444456777777788777776532  445567777777777      477776665443332   


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.+....+   ..+..+++|+.|++++|.+...                         .+..+..+ ++|
T Consensus       192 ~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~~~l-~~L  242 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDA---ASLKGLNNLAKLGLSFNSISAV-------------------------DNGSLANT-PHL  242 (330)
T ss_dssp             TTCSEEECTTSCCCEECT---GGGTTCTTCCEEECCSSCCCEE-------------------------CTTTGGGS-TTC
T ss_pred             ccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCcee-------------------------ChhhccCC-CCC
Confidence            677777777777654322   4567777788888877764321                         12234444 478


Q ss_pred             eEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccC------CCCCcCEEecCCCccccc--ccccccCcCCCc
Q 041391          597 EKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHK------KYSTVKVLRLRYLNELNV--NWRELQALFPDL  667 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~------~f~~L~~L~L~~l~~L~l--~~~~l~~~~p~L  667 (704)
                      ++|+|++|.+..+|.++..+ +|++|+|++|.++.++...+.      .++.|+.|++.+++....  ....+ ..++.|
T Consensus       243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l  321 (330)
T 1xku_A          243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVR  321 (330)
T ss_dssp             CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCG
T ss_pred             CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccce
Confidence            88888888888888877777 888888888888777654432      235677777777654321  11111 334556


Q ss_pred             cEEeeecC
Q 041391          668 EYLEKFNC  675 (704)
Q Consensus       668 ~~L~i~~C  675 (704)
                      +.+++.++
T Consensus       322 ~~l~L~~N  329 (330)
T 1xku_A          322 AAVQLGNY  329 (330)
T ss_dssp             GGEEC---
T ss_pred             eEEEeccc
Confidence            66666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=4.5e-21  Score=204.06  Aligned_cols=266  Identities=17%  Similarity=0.149  Sum_probs=182.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+.+..|.++++|++|++++|.++.         ..|..|..+++|++|+|++| .+..+|..+.  
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--  122 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK---------IHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--  122 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---------ECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc---------cCHhHhhCcCCCCEEECCCC-cCCccCcccc--
Confidence            45555555566666656678888888888888887653         22567788888888888887 4667776554  


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccc--cccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI--EYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~--~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      ++|++|++++|......+..+..+++|++|++++|.+.  +..|..+..+ +|++|      ++++|.+...+..+.   
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L------~l~~n~l~~l~~~~~---  192 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL------RISEAKLTGIPKDLP---  192 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC------BCCSSBCSSCCSSSC---
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE------ECcCCCCCccCcccc---
Confidence            78888888887443333344778888888888888764  2455666666 78888      577777766544433   


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.+....+   ..+..+++|+.|++++|.+...                         .+..+..+ ++|
T Consensus       193 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~-------------------------~~~~~~~l-~~L  243 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMI-------------------------ENGSLSFL-PTL  243 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCC-------------------------CTTGGGGC-TTC
T ss_pred             CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcC-------------------------ChhHhhCC-CCC
Confidence            678888888887765433   4577788888888888875331                         22344555 489


Q ss_pred             eEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCC------CCCcCEEecCCCcccc--cccccccCcCCCc
Q 041391          597 EKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKK------YSTVKVLRLRYLNELN--VNWRELQALFPDL  667 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~------f~~L~~L~L~~l~~L~--l~~~~l~~~~p~L  667 (704)
                      +.|+|++|.+..+|.++..+ +|+.|+|++|.++.++...+..      ++.|+.|.+.+++...  +....+ ..+++|
T Consensus       244 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-~~l~~L  322 (332)
T 2ft3_A          244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDR  322 (332)
T ss_dssp             CEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-TTBCCS
T ss_pred             CEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc-cccchh
Confidence            99999999999999888777 9999999999998877654322      5678888888876442  111111 456778


Q ss_pred             cEEeeecCC
Q 041391          668 EYLEKFNCP  676 (704)
Q Consensus       668 ~~L~i~~C~  676 (704)
                      +.|++.+|.
T Consensus       323 ~~l~l~~n~  331 (332)
T 2ft3_A          323 LAIQFGNYK  331 (332)
T ss_dssp             TTEEC----
T ss_pred             hhhhccccc
Confidence            888887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=2.9e-21  Score=205.38  Aligned_cols=153  Identities=20%  Similarity=0.271  Sum_probs=108.1

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      ....++.|+|++|.++          .+|..+..+++|++|+|++|. +..+|..++++++|++|+|++|.. ..+|..+
T Consensus        79 ~~~~l~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l  146 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP----------QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASI  146 (328)
T ss_dssp             TSTTCCEEEEESSCCS----------SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGG
T ss_pred             cccceeEEEccCCCch----------hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHH
Confidence            3567899999999765          567778889999999999985 558998899999999999999854 5889999


Q ss_pred             cccCCCcEEEccCcccccccCccCCC---------CCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSS---------LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA  530 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~---------L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~  530 (704)
                      +++++|++|++++|...+.+|..++.         +++|++|      ++++|.+...+..+. .+++|+.|++++|.+.
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L------~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL------RLEWTGIRSLPASIA-NLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE------EEEEECCCCCCGGGG-GCTTCCEEEEESSCCC
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE------ECcCCCcCcchHhhc-CCCCCCEEEccCCCCC
Confidence            99999999999998888888876654         5555555      345555443333444 5555555555555544


Q ss_pred             CchhhHHHHhccCCCccEEEEEecC
Q 041391          531 IPIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       531 ~~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      +. +   ..+..+++|+.|++++|.
T Consensus       220 ~l-~---~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          220 AL-G---PAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             CC-C---GGGGGCTTCCEEECTTCT
T ss_pred             cC-c---hhhccCCCCCEEECcCCc
Confidence            21 1   234555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=6e-21  Score=213.33  Aligned_cols=273  Identities=17%  Similarity=0.097  Sum_probs=155.1

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhh
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIA  436 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~  436 (704)
                      .+++.+....+.+..+.+..|.++++|++|+|++|.++.          +| ..|.++++|++|+|++|......|..+.
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL----------IPLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS----------CCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc----------cCcccccCCCCCCEEECCCCccccCChhHcc
Confidence            345555555555555555566777777777777776542          22 2356666666777666644444455566


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhC
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNS  515 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~  515 (704)
                      ++++|++|+|++|......|..+..+++|++|++++|.+....+..+..+++|+.|      ++++|.+....+ .+. .
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L------~l~~n~i~~~~~~~~~-~  198 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL------RLRHLNINAIRDYSFK-R  198 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE------EEESCCCCEECTTCSC-S
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE------eCCCCcCcEeChhhcc-c
Confidence            66666666666664444445556666666666666666443333345566666666      355555544433 223 5


Q ss_pred             CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccc
Q 041391          516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL  595 (704)
Q Consensus       516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~  595 (704)
                      +++|+.|++++|.....++   ..+....+|+.|++++|.+.............+..+ .+..+......+..+..+ ++
T Consensus       199 l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l-~~  273 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-NLSYNPISTIEGSMLHEL-LR  273 (477)
T ss_dssp             CTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE-ECCSSCCCEECTTSCTTC-TT
T ss_pred             CcccceeeCCCCccccccC---cccccCccccEEECcCCcccccCHHHhcCccccCee-ECCCCcCCccChhhcccc-cc
Confidence            5555555555554332222   112222344555554444331110000000001000 001111111122345555 48


Q ss_pred             eeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391          596 LEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE  652 (704)
Q Consensus       596 L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~  652 (704)
                      |+.|+|++|.+..+ |..+..+ +|+.|+|++|.+..++...+..+++|+.|+|.+++.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999998776 5667777 999999999999999988888899999999988763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=5.8e-21  Score=215.80  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      .+++.+....+.+..+.+..|.++++|++|+|++|.++.         ..|..|.++++|++|+|++| .+..+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY---------LDISVFKFNQELEYLDLSHN-KLVKISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE---------EEGGGGTTCTTCCEEECCSS-CCCEEECC--C
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCC---------cChHHhhcccCCCEEecCCC-ceeecCcc--c
Confidence            355666666666666666778888888888888887653         22567778888888888887 45677765  7


Q ss_pred             cccCcEEeeecccCCC-cCCccccccCCCcEEEccCccccc
Q 041391          438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIE  477 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~  477 (704)
                      +++|++|+|++|...+ .+|..++++++|++|++++|.+.+
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            7888888888875544 467778888888888887776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=4.3e-20  Score=197.41  Aligned_cols=260  Identities=23%  Similarity=0.254  Sum_probs=157.0

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.+  |..+++|++|++++|.++.          + +.+..+++|++|++++| .+..+|. +..+
T Consensus        67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~----------~-~~~~~l~~L~~L~l~~n-~i~~~~~-~~~l  131 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD----------I-SALQNLTNLRELYLNED-NISDISP-LANL  131 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------C-GGGTTCTTCSEEECTTS-CCCCCGG-GTTC
T ss_pred             CccEEEccCCccccchh--hhcCCcCCEEEccCCcccC----------c-hHHcCCCcCCEEECcCC-cccCchh-hccC
Confidence            44555444444444433  6666677777776665542          2 23666667777777765 3555555 6666


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE  518 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~  518 (704)
                      ++|++|++++|.....++ .+..+++|++|++++|.+.. ++. ++.+++|++|      ++++|.+....+ +. .+++
T Consensus       132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L------~l~~n~l~~~~~-~~-~l~~  200 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSL------SLNYNQIEDISP-LA-SLTS  200 (347)
T ss_dssp             TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEE------ECTTSCCCCCGG-GG-GCTT
T ss_pred             CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEE------EccCCccccccc-cc-CCCc
Confidence            777777777665544443 36666677777777666433 222 5566666666      466666544333 44 6667


Q ss_pred             CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391          519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK  598 (704)
Q Consensus       519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~  598 (704)
                      |+.|++++|.+....+     +..+++|+.|++++|.+..                          ++. +..+ ++|++
T Consensus       201 L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~--------------------------~~~-~~~l-~~L~~  247 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITD--------------------------LSP-LANL-SQLTW  247 (347)
T ss_dssp             CCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC--------------------------CGG-GTTC-TTCCE
T ss_pred             cceeecccCCCCCCch-----hhcCCcCCEEEccCCccCC--------------------------Ccc-hhcC-CCCCE
Confidence            7777777666553221     5666677777777666432                          222 3344 47888


Q ss_pred             EEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391          599 LDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM  677 (704)
Q Consensus       599 L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~  677 (704)
                      |++++|.+..++ .+..+ +|++|++++|.+..++.  ...+++|+.|+|+++.........+ ..+|+|+.|++.+|+ 
T Consensus       248 L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~-  322 (347)
T 4fmz_A          248 LEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNH-  322 (347)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSS-
T ss_pred             EECCCCccCCCh-hHhcCCCcCEEEccCCccCCChh--hcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCc-
Confidence            888888777764 34555 88888888888777643  4457788888888775433211112 457888888888875 


Q ss_pred             CCCCC
Q 041391          678 ISFFP  682 (704)
Q Consensus       678 L~~lP  682 (704)
                      ++.+|
T Consensus       323 l~~~~  327 (347)
T 4fmz_A          323 ITDIR  327 (347)
T ss_dssp             CCCCG
T ss_pred             ccccc
Confidence            55544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=5.7e-21  Score=217.21  Aligned_cols=126  Identities=21%  Similarity=0.263  Sum_probs=78.3

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC-CCchhhh
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR-EIPSSIA  436 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~-~lP~~l~  436 (704)
                      .+++.+....+.+....+..|.++++|++|++++|.++..         .|..|+.+++|++|+|++|.... ..|..++
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC---------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc---------CHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence            3555555555555555555667777777777777765421         23446777777777777764322 2345567


Q ss_pred             ccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCccee
Q 041391          437 NLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL  492 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L  492 (704)
                      ++++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.+++|++|
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            77777777777765455555 356677777777777777666666666665555555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.9e-21  Score=206.74  Aligned_cols=224  Identities=22%  Similarity=0.242  Sum_probs=184.1

Q ss_pred             eeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccc
Q 041391          360 VSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLS  439 (704)
Q Consensus       360 lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~  439 (704)
                      ++.+....+.+..+ +..+.++++|++|+|++|.++          .+|..++.+++|++|+|++|. +..+|..+++++
T Consensus        83 l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~----------~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~  150 (328)
T 4fcg_A           83 RVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM----------ELPDTMQQFAGLETLTLARNP-LRALPASIASLN  150 (328)
T ss_dssp             CCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC----------CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred             eeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc----------chhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence            34444444444433 234667999999999999775          567889999999999999984 669999999999


Q ss_pred             cCcEEeeecccCCCcCCccccc---------cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh
Q 041391          440 NLRVLDLRCCYYLTKLPKGLDS---------LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE  510 (704)
Q Consensus       440 ~L~~LdLs~c~~l~~lP~~i~~---------L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~  510 (704)
                      +|++|+|++|...+.+|..++.         +++|++|++++|.+. .+|..++.+++|++|      ++++|.+.+.++
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L------~L~~N~l~~l~~  223 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL------KIRNSPLSALGP  223 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE------EEESSCCCCCCG
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE------EccCCCCCcCch
Confidence            9999999999999999988765         999999999999866 889999999999999      699999998878


Q ss_pred             hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc
Q 041391          511 DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG  590 (704)
Q Consensus       511 ~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  590 (704)
                      .+. .+++|+.|++++|.+.+.++   ..+..+++|+.|+|++|.+.                         +.+|..+.
T Consensus       224 ~l~-~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~-------------------------~~~p~~~~  274 (328)
T 4fcg_A          224 AIH-HLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSNL-------------------------LTLPLDIH  274 (328)
T ss_dssp             GGG-GCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTTC-------------------------CBCCTTGG
T ss_pred             hhc-cCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCch-------------------------hhcchhhh
Confidence            888 99999999999998876655   56888999999999988743                         23566666


Q ss_pred             ccccceeEEEEEcCC-CCCCcccCCCC-CeeEEEEEcCCCCCcC
Q 041391          591 QKDRLLEKLDLHCFP-LESLPNWLSGL-NLRKLYIRGGQLRSLQ  632 (704)
Q Consensus       591 ~lp~~L~~L~Ls~~~-l~~lP~~l~~l-~L~~L~Ls~n~l~~lp  632 (704)
                      .+ ++|+.|+|++|. .+.+|.++..+ +|+.+.+..+.+..++
T Consensus       275 ~l-~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          275 RL-TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             GC-TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             cC-CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            66 489999999866 47899999888 8999988877664443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=7e-21  Score=227.81  Aligned_cols=295  Identities=19%  Similarity=0.172  Sum_probs=175.5

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchh-hHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKF-LKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~l-p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      +++.+....+.+..+.+..|.++++|++|+|++|...         ..+ |..|.++++|++|+|++|......|..|++
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            4555555556666555666778888888888777432         123 566778888888888887544445777778


Q ss_pred             cccCcEEeeecccCCCcCCcc--ccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchh-hHH
Q 041391          438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLE-DLG  513 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~--i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~  513 (704)
                      +++|++|+|++|...+.+|..  ++++++|++|++++|.+.+..| ..++++++|++|      ++++|.+....+ .+.
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L------~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI------DFSSNQIFLVCEHELE  169 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE------EEESSCCCCCCSGGGH
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE------ECCCCcCCeeCHHHcc
Confidence            888888888877665555554  7778888888888877655443 457778888887      477776655432 333


Q ss_pred             hCC--CCCcEEEEEeeCCCCchhhHHHHhccCC------CccEEEEEecCCCCCCCCcccccc-----------------
Q 041391          514 NSL--KELRKLSIYVNNNAIPIEKLSESLEKFK------NLLKLKIAWGAGYSKCRNQEGNNE-----------------  568 (704)
Q Consensus       514 ~~L--~~L~~L~L~~n~~~~~~~~l~~~L~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~-----------------  568 (704)
                       .+  ++|+.|+++.|.+.+..+   ..+..+.      .|+.|++++|.+....+.......                 
T Consensus       170 -~l~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          170 -PLQGKTLSFFSLAANSLYSRVS---VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             -HHHHCSSCCCEECCSBSCCCCC---CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             -cccCCccceEECCCCccccccc---cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence             44  677777777776654332   2233333      377888877755433222111100                 


Q ss_pred             ---------------------cchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEc
Q 041391          569 ---------------------HNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRG  625 (704)
Q Consensus       569 ---------------------~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~  625 (704)
                                           .+..+ .+..+......+..+..+ ++|+.|+|++|.+..+ |..+..+ +|++|+|++
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L-~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHL-DLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEE-ECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             cccccccCCCChhhhhccccCCccEE-ECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence                                 00000 011111112223444455 4788888888877655 3455556 888888888


Q ss_pred             CCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecC
Q 041391          626 GQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC  675 (704)
Q Consensus       626 n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C  675 (704)
                      |.+..++...+..+++|+.|+|+++..-.+....+ ..+++|+.|++.+|
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDN  372 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCC
Confidence            88877766666667788888777653221111111 23455555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=3.4e-21  Score=213.83  Aligned_cols=275  Identities=16%  Similarity=0.143  Sum_probs=180.3

Q ss_pred             cceeeeeecccCCCC-CcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-
Q 041391          357 LLTVSALVNVSEQFP-DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-  434 (704)
Q Consensus       357 ~~~lr~l~~~~~~~~-~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-  434 (704)
                      ..+++.+....+.+. .+.+..|.++++|++|+|++|.++.         ..|..|+++++|++|+|++|...+..|.. 
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  123 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ---------LETGAFNGLANLEVLTLTQCNLDGAVLSGN  123 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE---------ECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred             CccccEEECcCCcccceECcccccccccCCEEeCCCCccCc---------cChhhccCcccCCEEeCCCCCCCccccCcc
Confidence            335555555555443 3334567888888888888886652         23566778888888888887544334544 


Q ss_pred             -hhccccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCC--------------------------
Q 041391          435 -IANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSL--------------------------  486 (704)
Q Consensus       435 -l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L--------------------------  486 (704)
                       +.++++|++|+|++|...+..|.. +.++++|++|++++|.+.+..|..+..+                          
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~  203 (455)
T 3v47_A          124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE  203 (455)
T ss_dssp             TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred             cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence             777888888888887655555655 6778888888888887666555544333                          


Q ss_pred             --------CCcceecccccccCCCCCCccchhh-HHh--------------------------------------CCCCC
Q 041391          487 --------SELQVLKGFLVTDAKPNDKICTLED-LGN--------------------------------------SLKEL  519 (704)
Q Consensus       487 --------~~L~~L~~~~~~~ls~n~l~~~~~~-l~~--------------------------------------~L~~L  519 (704)
                              ++|++|      ++++|.+.+..+. +..                                      ..++|
T Consensus       204 ~~~~~~~~~~L~~L------~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  277 (455)
T 3v47_A          204 KCGNPFKNTSITTL------DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV  277 (455)
T ss_dssp             HHCCTTTTCEEEEE------ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred             ccccccccceeeeE------ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence                    567777      4666665543321 110                                      12467


Q ss_pred             cEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEE
Q 041391          520 RKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKL  599 (704)
Q Consensus       520 ~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L  599 (704)
                      +.|++++|.+.+..+   ..+..+++|+.|++++|.+....+........+..+ .+..+...+..+..+..+ ++|++|
T Consensus       278 ~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l-~~L~~L  352 (455)
T 3v47_A          278 KTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSIDSRMFENL-DKLEVL  352 (455)
T ss_dssp             CEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECGGGGTTC-TTCCEE
T ss_pred             eEEEecCccccccch---hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcChhHhcCc-ccCCEE
Confidence            777777777654333   457777888888888887654333222222222222 112222222234455666 599999


Q ss_pred             EEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          600 DLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       600 ~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      +|++|.+..+ |.++..+ +|++|+|++|+++.+|...+..+++|+.|+|++++
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            9999999877 6678778 99999999999999998887889999999998765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.4e-20  Score=216.79  Aligned_cols=157  Identities=18%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.         ..|..|.++++|++|+|++|......|..++++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW---------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE---------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccce---------eChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            45566666666666666677888888888888886653         235667788888888888875544556677888


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~  517 (704)
                      ++|++|++++|.....-|..++++++|++|++++|.+.+..+..+..+++|++|      ++++|.+....+. +. .++
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~-~l~  177 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL------DFQNNAIHYLSKEDMS-SLQ  177 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE------ECCSSCCCEECHHHHH-TTT
T ss_pred             ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE------EcccCcccccChhhhh-hhc
Confidence            888888888875444335667788888888888887655222334447788888      5777777666443 44 777


Q ss_pred             CCc--EEEEEeeCCCC
Q 041391          518 ELR--KLSIYVNNNAI  531 (704)
Q Consensus       518 ~L~--~L~L~~n~~~~  531 (704)
                      +|+  .|++++|.+.+
T Consensus       178 ~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TCCSEEEECTTCCCCE
T ss_pred             ccceeEEecCCCccCc
Confidence            777  66777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=211.29  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             CCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHh
Q 041391          500 AKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAE  578 (704)
Q Consensus       500 ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~  578 (704)
                      +++|.+.+.+ ..+. .+++|+.|++++|.+.+ ++.++..+..+++|+.|++++|.+..                    
T Consensus       331 Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------  388 (520)
T 2z7x_B          331 FSNNLLTDTVFENCG-HLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSY--------------------  388 (520)
T ss_dssp             CCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCB-HHHHHHHHTTCTTCCEEECCSSCCBC--------------------
T ss_pred             eECCccChhhhhhhc-cCCCCCEEEccCCccCc-cccchHHHhhCCCCCEEECCCCcCCc--------------------
Confidence            4444444422 2333 55555555555555442 23334455555555555555555322                    


Q ss_pred             hhcCCCCCCc-ccccccceeEEEEEcCCCC-CCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccc
Q 041391          579 TQGKGGLDGT-FGQKDRLLEKLDLHCFPLE-SLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVN  656 (704)
Q Consensus       579 ~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~-~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~  656 (704)
                           .+|.. +..+ ++|+.|++++|.+. .+|..+. .+|+.|+|++|++..+|.... .+++|+.|+|+++..-.+.
T Consensus       389 -----~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          389 -----DEKKGDCSWT-KSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             -----CGGGCSCCCC-TTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCC
T ss_pred             -----ccccchhccC-ccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccC
Confidence                 13332 3334 58999999998873 4454442 289999999999988887766 6899999999887543322


Q ss_pred             cccccCcCCCccEEeeecCCCCCCCC
Q 041391          657 WRELQALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       657 ~~~l~~~~p~L~~L~i~~C~~L~~lP  682 (704)
                      .. ....+++|+.|++.+|+--..++
T Consensus       461 ~~-~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          461 DG-IFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TT-TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HH-HhccCCcccEEECcCCCCcccCC
Confidence            21 12467889999999986544444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.84  E-value=9e-22  Score=223.82  Aligned_cols=153  Identities=10%  Similarity=0.091  Sum_probs=118.6

Q ss_pred             hchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHH-----
Q 041391          149 IRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFM-----  223 (704)
Q Consensus       149 ~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~-----  223 (704)
                      -++|+||+++||+..  .++++++++++|+++|+|+|||+++               +|+.++.+    .|+.+.     
T Consensus       296 ~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~---------------~g~~l~~~----~w~~~~~l~~~  354 (549)
T 2a5y_B          296 DECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMM---------------FFKSCEPK----TFEKMAQLNNK  354 (549)
T ss_dssp             HHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHH---------------HHTTCCSS----SHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHH---------------HHHHhccc----hHHHHHHhHHH
Confidence            467999999999763  3578999999999999999999555               44444322    132221     


Q ss_pred             -------HHHHHHHHhhhhchhhhHHHHH-----------HhcccCCCCccChHHHHHHHHHC--CCCccchhhhhhccc
Q 041391          224 -------EMIINFRNKFRNLKNESKFCLW-----------CFTVFPNNAVVRKRLVENWLITE--DKNRAEENREEKNKA  283 (704)
Q Consensus       224 -------~i~~~L~lSYd~L~~~lK~cFL-----------y~a~Fp~d~~i~~~~Li~~Wiae--G~i~~~~~~~~~~~~  283 (704)
                             ++.++|++||++||.++|.||+           |||+||+|+.|+    |.+|+|+  ||+...         
T Consensus       355 l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~---------  421 (549)
T 2a5y_B          355 LESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSN---------  421 (549)
T ss_dssp             HHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--------------
T ss_pred             hhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccC---------
Confidence                   1445789999999999999999           999999999998    8999999  999543         


Q ss_pred             ccccCHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhcCCCcc
Q 041391          284 VEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDL  340 (704)
Q Consensus       284 ~~~~~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~~~e~~  340 (704)
                      ..+.+++++++ ||++|+++|||++...+    ...+|+|||+||++|+.++.+++.
T Consensus       422 ~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          422 EEEQLDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             --CCCTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CCCCCHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHHHHHH
Confidence            12567888888 99999999999987643    346899999999999999987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=9e-20  Score=209.94  Aligned_cols=268  Identities=16%  Similarity=0.088  Sum_probs=145.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.+..|.++++|++|++++|.++.+         .|..|.++++|++|+|++|......|..|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i---------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI---------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc---------CHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence            455555555555555555666667777777776655421         13456666666666666664333335666666


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCcc----------
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKIC----------  507 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~----------  507 (704)
                      ++|++|+|++|......|..++++++|++|++++|.+.+ .+|..++++++|++|      ++++|.+.+          
T Consensus       104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L------~Ls~n~l~~~~~~~~~~l~  177 (606)
T 3vq2_A          104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV------DLSYNYIQTITVNDLQFLR  177 (606)
T ss_dssp             TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE------ECCSSCCCEECTTTTHHHH
T ss_pred             ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE------EccCCcceecChhhhhhhh
Confidence            666666666664433333556666666666666666543 456666666666666      355554443          


Q ss_pred             ------------------chhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391          508 ------------------TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH  569 (704)
Q Consensus       508 ------------------~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  569 (704)
                                        ..+... ...+|+.|++++|.+.+  ...+..+.+++.|+.+.+..+.+.............
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~  254 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSS--NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI  254 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCH--HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred             ccccccceeeccCCCcceeCcccc-cCceeeeeeccCCccch--hHHHHHhccccccccccccccccccCCcccccChHH
Confidence                              333333 33356667777665542  233456777777777777655433211111000000


Q ss_pred             chhhHh--------hHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCC
Q 041391          570 NKKQED--------EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYS  640 (704)
Q Consensus       570 ~~~l~~--------~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~  640 (704)
                      ...+..        ...+...+.+|. +..+ ++|+.|+++++.+..+| ++..+ +|+.|++++|.+..+|..   .++
T Consensus       255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l-~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~---~l~  328 (606)
T 3vq2_A          255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCL-ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL---DLP  328 (606)
T ss_dssp             GTTGGGSEEEEEEECCCTTCCGGGGS-CGGG-TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC---CCS
T ss_pred             hhhhhhccHhheeccccccccccccc-cccC-CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC---CCC
Confidence            000000        001111122222 3344 47777777777777776 55555 777777777777666632   456


Q ss_pred             CcCEEecCCC
Q 041391          641 TVKVLRLRYL  650 (704)
Q Consensus       641 ~L~~L~L~~l  650 (704)
                      +|+.|++.++
T Consensus       329 ~L~~L~l~~n  338 (606)
T 3vq2_A          329 FLKSLTLTMN  338 (606)
T ss_dssp             SCCEEEEESC
T ss_pred             ccceeeccCC
Confidence            6666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=1.1e-19  Score=194.18  Aligned_cols=258  Identities=17%  Similarity=0.199  Sum_probs=204.8

Q ss_pred             ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhh
Q 041391          356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI  435 (704)
Q Consensus       356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l  435 (704)
                      ....++.+....+.+..+  ..|..+++|++|++++|.++.          ++. +..+++|++|++++|.....++. +
T Consensus        86 ~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~----------~~~-~~~l~~L~~L~l~~n~~~~~~~~-~  151 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD----------ISP-LANLTKMYSLNLGANHNLSDLSP-L  151 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC----------CGG-GTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred             cCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC----------chh-hccCCceeEEECCCCCCcccccc-h
Confidence            344666666666666554  358999999999999998763          333 88999999999999977776666 9


Q ss_pred             hccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhC
Q 041391          436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNS  515 (704)
Q Consensus       436 ~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~  515 (704)
                      ..+++|++|++++|. ...++. +..+++|++|++++|.+. .++. +..+++|+.|      ++++|.+....+ +. .
T Consensus       152 ~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L------~l~~n~l~~~~~-~~-~  219 (347)
T 4fmz_A          152 SNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYF------TAYVNQITDITP-VA-N  219 (347)
T ss_dssp             TTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEE------ECCSSCCCCCGG-GG-G
T ss_pred             hhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCcccee------ecccCCCCCCch-hh-c
Confidence            999999999999985 455544 889999999999999865 4444 7889999999      588888776555 66 8


Q ss_pred             CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccc
Q 041391          516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL  595 (704)
Q Consensus       516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~  595 (704)
                      +++|+.|++++|.+....+     +..+++|+.|++++|.+..                          + ..+..+ ++
T Consensus       220 ~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l-~~  266 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISD--------------------------I-NAVKDL-TK  266 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC--------------------------C-GGGTTC-TT
T ss_pred             CCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCC--------------------------C-hhHhcC-CC
Confidence            9999999999998875322     8899999999999998543                          1 123344 49


Q ss_pred             eeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391          596 LEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN  674 (704)
Q Consensus       596 L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~  674 (704)
                      |+.|++++|.+..+| ++..+ +|+.|+|++|.+...+......+++|+.|+|++++...+.  . ...+++|+.|++.+
T Consensus       267 L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--P-LASLSKMDSADFAN  342 (347)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG--G-GGGCTTCSEESSSC
T ss_pred             cCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc--C-hhhhhccceeehhh
Confidence            999999999998885 45556 9999999999998777666677999999999998744321  1 35789999999999


Q ss_pred             CC
Q 041391          675 CP  676 (704)
Q Consensus       675 C~  676 (704)
                      |+
T Consensus       343 N~  344 (347)
T 4fmz_A          343 QV  344 (347)
T ss_dssp             C-
T ss_pred             hc
Confidence            85

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=7.4e-20  Score=208.94  Aligned_cols=120  Identities=20%  Similarity=0.254  Sum_probs=90.1

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      ..++.+....+.+..+.+..|.++++|++|+|++|.++.+         .|..|..+++|++|+|++| .+..+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL---------DFHVFLFNQDLEYLDVSHN-RLQNISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE---------CTTTTTTCTTCCEEECTTS-CCCEECSC--C
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC---------CHHHhCCCCCCCEEECCCC-cCCccCcc--c
Confidence            4566777777777777777889999999999999977632         2567888999999999997 46688875  7


Q ss_pred             cccCcEEeeecccCCC-cCCccccccCCCcEEEccCcccccccCccCCCCCCc--cee
Q 041391          438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL--QVL  492 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L--~~L  492 (704)
                      +++|++|+|++|...+ .+|..++++++|++|++++|.+...   .+..+++|  ++|
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L  174 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI  174 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence            8999999999885443 3457888999999999998876542   23444444  666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=2.8e-20  Score=217.30  Aligned_cols=159  Identities=19%  Similarity=0.121  Sum_probs=120.8

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhh
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIA  436 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~  436 (704)
                      .+++.+....+.+..+.+..|.++++|++|+|++|.++..         .|..|+++++|++|+|++| .+..+|. .|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~   94 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELCQKLPMLKVLNLQHN-ELSQLSDKTFA   94 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---------CTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc---------CHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence            3566676667777777777788899999999999877632         3567788899999999987 4666765 588


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHh--
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGN--  514 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~--  514 (704)
                      ++++|++|+|++|...+..|..++++++|++|++++|.+.+..|..++++++|++|      ++++|.+.+..+....  
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL------LLSNNKIQALKSEELDIF  168 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE------ECCSSCCCCBCHHHHGGG
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE------EccCCcccccCHHHhhcc
Confidence            89999999999885544445678889999999999998777777778888899998      5888877766554221  


Q ss_pred             CCCCCcEEEEEeeCCCCc
Q 041391          515 SLKELRKLSIYVNNNAIP  532 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~  532 (704)
                      .+++|+.|++++|.+.+.
T Consensus       169 ~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             TTCEESEEECTTCCCCCB
T ss_pred             ccccccEEECCCCccccc
Confidence            457788888888876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=5.6e-20  Score=200.03  Aligned_cols=267  Identities=17%  Similarity=0.093  Sum_probs=167.7

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA  436 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~  436 (704)
                      .+++.+....+.+..+.+..|..+++|++|+|++|.++..         .|..|+.+++|++|+|++| .+..+|.. ++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~  138 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---------PPHVFQNVPLLTVLVLERN-DLSSLPRGIFH  138 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC---------CHHHhcCCCCCCEEECCCC-ccCcCCHHHhc
Confidence            4566666666667666666788899999999999877632         2456788899999999997 46677765 58


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc-------------cccCCCC
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL-------------VTDAKPN  503 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~-------------~~~ls~n  503 (704)
                      ++++|++|++++|......|..+..+++|++|++++|.+... +  ++.+++|+.|....             .-++++|
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n  215 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  215 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred             CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEECCCC
Confidence            889999999998866555566688889999999998876532 2  23344444331000             0023333


Q ss_pred             CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391          504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG  583 (704)
Q Consensus       504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (704)
                      .+......   ..++|+.|++++|.+...     ..+..+++|+.|++++|.+....+........+..+. +..+ ...
T Consensus       216 ~l~~~~~~---~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n-~l~  285 (390)
T 3o6n_A          216 SINVVRGP---VNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNN-RLV  285 (390)
T ss_dssp             CCCEEECC---CCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE-CCSS-CCC
T ss_pred             eeeecccc---ccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE-CCCC-cCc
Confidence            33222111   224555555555555432     2345555555555555554332222111111111111 0001 112


Q ss_pred             CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      .+|..+..+ ++|+.|+|++|.+..+|.++..+ +|+.|+|++|.+..++   ...+++|+.|+|++++
T Consensus       286 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          286 ALNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EEECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             ccCcccCCC-CCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCC
Confidence            234444445 49999999999999999887766 9999999999998876   4568999999998865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=6.3e-20  Score=209.52  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC--ch
Q 041391          356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI--PS  433 (704)
Q Consensus       356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l--P~  433 (704)
                      ...+++.+....+.+..+.+.+|.++++|++|+|++|.++          .+|..  .+++|++|+|++|. +..+  |.
T Consensus        74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~  140 (562)
T 3a79_B           74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----------NISCC--PMASLRHLDLSFND-FDVLPVCK  140 (562)
T ss_dssp             TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC----------EECSC--CCTTCSEEECCSSC-CSBCCCCG
T ss_pred             cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC----------ccCcc--ccccCCEEECCCCC-ccccCchH
Confidence            3446777777777777777777888899999999988775          23433  67777777777764 4443  35


Q ss_pred             hhhccccCcEEeeecccC
Q 041391          434 SIANLSNLRVLDLRCCYY  451 (704)
Q Consensus       434 ~l~~L~~L~~LdLs~c~~  451 (704)
                      .++++++|++|++++|..
T Consensus       141 ~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          141 EFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             GGGGCTTCCEEEEECSBC
T ss_pred             hhcccCcccEEecCCCcc
Confidence            677777777777776643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=2.9e-20  Score=211.42  Aligned_cols=182  Identities=15%  Similarity=0.106  Sum_probs=143.0

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN  437 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~  437 (704)
                      ..++.+....+.+....+..|.++++|++|++++|.++.         ..|..|..+++|++|+|++|......|..+++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT---------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc---------cChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            356777777777776667789999999999999998763         22467899999999999998544444455999


Q ss_pred             cccCcEEeeecccCCC-cCCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchh-hHHh
Q 041391          438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGN  514 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~  514 (704)
                      +++|++|++++|.... ..|..++++++|++|++++|...+.+| ..++.+++|++|      ++++|.+.+..+ .+. 
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~l~-  169 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL------EIKALSLRNYQSQSLK-  169 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE------EEEETTCCEECTTTTT-
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee------eccCCcccccChhhhh-
Confidence            9999999999986554 467789999999999999998666776 469999999999      588888877554 555 


Q ss_pred             CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC
Q 041391          515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS  558 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~  558 (704)
                      .+++|+.|+++.|.... ++.  ..+..+++|+.|++++|.+..
T Consensus       170 ~l~~L~~L~l~~n~~~~-~~~--~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAF-LLE--IFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TCSEEEEEEEECSBSTT-HHH--HHHHSTTTBSEEEEESCBCTT
T ss_pred             ccccCceEecccCcccc-cch--hhHhhcccccEEEccCCcccc
Confidence            88888999988887642 222  224567888888888887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=2e-19  Score=199.93  Aligned_cols=254  Identities=20%  Similarity=0.205  Sum_probs=163.7

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.  .|..+++|++|++++|.++.          +|  ++.+++|++|+|++|. +..+|  ++++
T Consensus        43 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~----------~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l  105 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT----------LD--LSQNTNLTYLACDSNK-LTNLD--VTPL  105 (457)
T ss_dssp             TCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC----------CC--CTTCTTCSEEECCSSC-CSCCC--CTTC
T ss_pred             CCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe----------Ec--cccCCCCCEEECcCCC-Cceee--cCCC
Confidence            4555555555555442  47788888888888887753          22  6788888888888874 55564  7888


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE  518 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~  518 (704)
                      ++|++|++++|. +..+|  ++.+++|++|++++|.+.+ ++  ++.+++|++|      ++++|...+.+ .+. .+++
T Consensus       106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L------~l~~n~~~~~~-~~~-~l~~  171 (457)
T 3bz5_A          106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTEL------DCHLNKKITKL-DVT-PQTQ  171 (457)
T ss_dssp             TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEE------ECTTCSCCCCC-CCT-TCTT
T ss_pred             CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEE------ECCCCCccccc-ccc-cCCc
Confidence            888888888874 44455  7888888888888887654 43  7788888888      47777555544 455 7788


Q ss_pred             CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391          519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK  598 (704)
Q Consensus       519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~  598 (704)
                      |+.|++++|.+.+ ++     +..+++|+.|++++|.+...                            .+..+ ++|+.
T Consensus       172 L~~L~ls~n~l~~-l~-----l~~l~~L~~L~l~~N~l~~~----------------------------~l~~l-~~L~~  216 (457)
T 3bz5_A          172 LTTLDCSFNKITE-LD-----VSQNKLLNRLNCDTNNITKL----------------------------DLNQN-IQLTF  216 (457)
T ss_dssp             CCEEECCSSCCCC-CC-----CTTCTTCCEEECCSSCCSCC----------------------------CCTTC-TTCSE
T ss_pred             CCEEECCCCccce-ec-----cccCCCCCEEECcCCcCCee----------------------------ccccC-CCCCE
Confidence            8888888887764 22     67778888888888875431                            12233 36777


Q ss_pred             EEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC--Cccccccccccc-----CcCCCccEE
Q 041391          599 LDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY--LNELNVNWRELQ-----ALFPDLEYL  670 (704)
Q Consensus       599 L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~--l~~L~l~~~~l~-----~~~p~L~~L  670 (704)
                      |++++|.+..+|  +..+ +|+.|++++|.+..+|.   ..|++|+.|.+.+  +..++++.+...     +.+++|+.|
T Consensus       217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L  291 (457)
T 3bz5_A          217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL  291 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCC
T ss_pred             EECcCCcccccC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEE
Confidence            777777776666  4445 77777777777766552   2345555544432  122222222211     334556666


Q ss_pred             eeecCCCCCCCCC
Q 041391          671 EKFNCPMISFFPC  683 (704)
Q Consensus       671 ~i~~C~~L~~lP~  683 (704)
                      ++.+|+.+..+|+
T Consensus       292 ~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          292 DVTHNTQLYLLDC  304 (457)
T ss_dssp             CCTTCTTCCEEEC
T ss_pred             ECCCCcccceecc
Confidence            6666655554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=5.4e-20  Score=211.64  Aligned_cols=267  Identities=17%  Similarity=0.097  Sum_probs=175.7

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA  436 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~  436 (704)
                      ..++.+....+.+..+.+..|..+++|++|+|++|.++.+         .|..|+.+++|++|+|++| .+..+|.. ++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~  144 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---------PPHVFQNVPLLTVLVLERN-DLSSLPRGIFH  144 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC---------CHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc
Confidence            4667777777777777677889999999999999987642         2456789999999999998 46677765 58


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc-------------cccCCCC
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL-------------VTDAKPN  503 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~-------------~~~ls~n  503 (704)
                      ++++|++|+|++|...+..|..++.+++|++|++++|.+.+. +  ++.+++|+.|....             .-++++|
T Consensus       145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  221 (597)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred             cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence            899999999999876666667789999999999999986543 2  23344444441000             0023333


Q ss_pred             CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391          504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG  583 (704)
Q Consensus       504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (704)
                      .+......+   .++|+.|++++|.+.+.     ..+..+++|+.|+|++|.+....+........+..+. +..+ ...
T Consensus       222 ~l~~~~~~~---~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N-~l~  291 (597)
T 3oja_B          222 SINVVRGPV---NVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNN-RLV  291 (597)
T ss_dssp             CCCEEECSC---CSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE-CTTS-CCC
T ss_pred             ccccccccc---CCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE-CCCC-CCC
Confidence            332222211   24566666666655432     3455666666666666665433222222222221111 1111 122


Q ss_pred             CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      .+|..+..+ ++|+.|+|++|.+..+|.++..+ +|+.|+|++|.+..++   ...+++|+.|+|++++
T Consensus       292 ~l~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          292 ALNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             CCCcccccC-CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence            244445455 49999999999999999888767 9999999999998776   4568999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=2.1e-19  Score=190.88  Aligned_cols=244  Identities=19%  Similarity=0.180  Sum_probs=150.4

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      ++|++|++++|.++.+.         +..|.++++|++|+|++|......|..++++++|++|++++| .+..+|..+. 
T Consensus        52 ~~l~~L~L~~n~i~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK---------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP-  120 (330)
T ss_dssp             TTCCEEECCSSCCCCBC---------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC-
T ss_pred             CCCeEEECCCCcCCEeC---------hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc-
Confidence            46667777777654211         234666777777777776433333666667777777777765 3445665544 


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCcc--c-hhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC--T-LEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~-~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                       ++|++|++++|.+....+..+..+++|++|      ++++|.+..  . ...+. .+++|+.|++++|.+... +   .
T Consensus       121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l-~---~  188 (330)
T 1xku_A          121 -KTLQELRVHENEITKVRKSVFNGLNQMIVV------ELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITTI-P---Q  188 (330)
T ss_dssp             -TTCCEEECCSSCCCBBCHHHHTTCTTCCEE------ECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCSC-C---S
T ss_pred             -ccccEEECCCCcccccCHhHhcCCccccEE------ECCCCcCCccCcChhhcc-CCCCcCEEECCCCccccC-C---c
Confidence             567777777776554444446666777777      466665542  2 23344 666777777776665431 1   1


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL-  616 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l-  616 (704)
                      .+  .++|+.|++++|.+..                         ..+..+..+ ++|+.|+|++|.+..++. ++..+ 
T Consensus       189 ~~--~~~L~~L~l~~n~l~~-------------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          189 GL--PPSLTELHLDGNKITK-------------------------VDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             SC--CTTCSEEECTTSCCCE-------------------------ECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGST
T ss_pred             cc--cccCCEEECCCCcCCc-------------------------cCHHHhcCC-CCCCEEECCCCcCceeChhhccCCC
Confidence            11  2566777776666422                         123344455 488888888888876654 55556 


Q ss_pred             CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-----CcCCCccEEeeecCCC
Q 041391          617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-----ALFPDLEYLEKFNCPM  677 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-----~~~p~L~~L~i~~C~~  677 (704)
                      +|++|+|++|.+..+|... ..+++|+.|+|+++..-.+....+.     ...+.|+.|++.++|-
T Consensus       241 ~L~~L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          241 HLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             TCCEEECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCEEECCCCcCccCChhh-ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            8888888888888887654 3478888888887654443333332     2357788888888763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=4.2e-19  Score=212.37  Aligned_cols=301  Identities=19%  Similarity=0.143  Sum_probs=163.4

Q ss_pred             ceeeeeecccCCC-CCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh--
Q 041391          358 LTVSALVNVSEQF-PDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS--  434 (704)
Q Consensus       358 ~~lr~l~~~~~~~-~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~--  434 (704)
                      ..++.+....+.. ..+.+..|.++++|++|+|++|.++.         ..|..|+++++|++|+|++|...+.+|..  
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  118 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF---------LHPDAFQGLFHLFELRLYFCGLSDAVLKDGY  118 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE---------ECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc---------cCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence            3445544444422 23335567777777777777776642         22566777777777777776544445544  


Q ss_pred             hhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCC--CCcceecccccccCCCCCCccchh-
Q 041391          435 IANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSL--SELQVLKGFLVTDAKPNDKICTLE-  510 (704)
Q Consensus       435 l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L--~~L~~L~~~~~~~ls~n~l~~~~~-  510 (704)
                      ++++++|++|+|++|...+..| ..++++++|++|++++|.+.+..|..++.+  ++|+.|      +++.|.+.+..+ 
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L------~L~~n~l~~~~~~  192 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF------SLAANSLYSRVSV  192 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC------EECCSBSCCCCCC
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE------ECCCCcccccccc
Confidence            6677777777777765444333 456777777777777776655555555444  455555      244444333221 


Q ss_pred             hHHhCCC------CCcEEEEEeeCCCCchhh-HH--------------------------------HHhcc--CCCccEE
Q 041391          511 DLGNSLK------ELRKLSIYVNNNAIPIEK-LS--------------------------------ESLEK--FKNLLKL  549 (704)
Q Consensus       511 ~l~~~L~------~L~~L~L~~n~~~~~~~~-l~--------------------------------~~L~~--l~~L~~L  549 (704)
                      .+. .+.      .|+.|++++|.+....+. +.                                ..+..  .++|+.|
T Consensus       193 ~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          193 DWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             CCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred             chh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence            111 111      244444444432211110 00                                00111  1344444


Q ss_pred             EEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCC
Q 041391          550 KIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQ  627 (704)
Q Consensus       550 ~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~  627 (704)
                      ++++|.+....+........+..+ .+..+...+..+..+..+ ++|++|+|++|.+..+ |.++..+ +|+.|+|++|.
T Consensus       272 ~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          272 DLSHGFVFSLNSRVFETLKDLKVL-NLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             ECTTCCCCEECSCCSSSCCCCCEE-EEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred             ECCCCcccccChhhhhcCCCCCEE-ECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence            444444332211111111111111 011111112234455555 4899999999888766 5667777 99999999999


Q ss_pred             CCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          628 LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       628 l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      +..++...+..+++|+.|+|+++..-.     + ..+|+|+.|.+.+| +++.+|.
T Consensus       350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i-~~~~~L~~L~l~~N-~l~~l~~  398 (844)
T 3j0a_A          350 IAIIQDQTFKFLEKLQTLDLRDNALTT-----I-HFIPSIPDIFLSGN-KLVTLPK  398 (844)
T ss_dssp             CCCCCSSCSCSCCCCCEEEEETCCSCC-----C-SSCCSCSEEEEESC-CCCCCCC
T ss_pred             CCccChhhhcCCCCCCEEECCCCCCCc-----c-cCCCCcchhccCCC-Ccccccc
Confidence            888887777778899999888764221     1 23677777777776 4555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=194.68  Aligned_cols=249  Identities=15%  Similarity=0.157  Sum_probs=178.0

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~~  437 (704)
                      .++.+....+.+..+.+..|.++++|++|++++|.++.+         .|..|..+++|++|+|++| .+..+|.. +++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  122 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP  122 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC
Confidence            566666666667666666788899999999998877632         2456888899999999987 45666655 788


Q ss_pred             cccCcEEeeecccCCCcCCc--cccccCCCcEEEccCccccccc-CccCCCCCCcceecccccccCCCCCCccchh-hHH
Q 041391          438 LSNLRVLDLRCCYYLTKLPK--GLDSLKKLTYLDISECYLIEYM-PKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLG  513 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~--~i~~L~~L~~L~Ls~n~~~~~l-P~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~  513 (704)
                      +++|++|++++| .+..+|.  .+..+++|++|++++|.....+ |..++.+++|++|      ++++|.+.+..+ .+.
T Consensus       123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~l~  195 (353)
T 2z80_A          123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL------EIDASDLQSYEPKSLK  195 (353)
T ss_dssp             CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE------EEEETTCCEECTTTTT
T ss_pred             CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE------ECCCCCcCccCHHHHh
Confidence            899999999987 4556765  6788899999999888534444 5568888888888      588888777644 455


Q ss_pred             hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391          514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD  593 (704)
Q Consensus       514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp  593 (704)
                       .+++|+.|++++|.+.. ++.  ..+..+++|+.|++++|.+.......                     ++. . ...
T Consensus       196 -~l~~L~~L~l~~n~l~~-~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~---------------------l~~-~-~~~  248 (353)
T 2z80_A          196 -SIQNVSHLILHMKQHIL-LLE--IFVDVTSSVECLELRDTDLDTFHFSE---------------------LST-G-ETN  248 (353)
T ss_dssp             -TCSEEEEEEEECSCSTT-HHH--HHHHHTTTEEEEEEESCBCTTCCCC-----------------------------CC
T ss_pred             -ccccCCeecCCCCcccc-chh--hhhhhcccccEEECCCCccccccccc---------------------ccc-c-ccc
Confidence             88889999999888743 322  33556788999999888865321110                     000 0 112


Q ss_pred             cceeEEEEEcCCCC-----CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          594 RLLEKLDLHCFPLE-----SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       594 ~~L~~L~Ls~~~l~-----~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      ..++.++++++.+.     .+|.++..+ +|+.|+|++|.++.+|...+..+++|+.|+|++++
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            35667777766553     467777777 89999999998888888776778888888887765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=8.4e-19  Score=195.50  Aligned_cols=275  Identities=21%  Similarity=0.215  Sum_probs=138.1

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.+  |..+++|++|++++|.++.          ++. +..+++|++|+|++| .+..+|. +.++
T Consensus        69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l  133 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD----------ITP-LANLTNLTGLTLFNN-QITDIDP-LKNL  133 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------CGG-GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred             CCCEEECCCCccCCchh--hhccccCCEEECCCCcccc----------Chh-hcCCCCCCEEECCCC-CCCCChH-HcCC
Confidence            44444444444444332  5556666666666655432          122 555555566665555 3444444 5555


Q ss_pred             ccCcEEeeecccCCCcCCc--------------------cccccCCCcEEEccCcccccccCccCCCCCCcceecccccc
Q 041391          439 SNLRVLDLRCCYYLTKLPK--------------------GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT  498 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~--------------------~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~  498 (704)
                      ++|++|++++|. +..+|.                    .+.++++|++|++++|.+. .++ .+..+++|++|      
T Consensus       134 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L------  204 (466)
T 1o6v_A          134 TNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL------  204 (466)
T ss_dssp             TTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE------
T ss_pred             CCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhccCCCCCEE------
Confidence            555555555553 222221                    2445555555555555532 222 24555555555      


Q ss_pred             cCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHh
Q 041391          499 DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAE  578 (704)
Q Consensus       499 ~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~  578 (704)
                      ++++|.+.+..+ +. .+++|+.|++++|.+...     ..+..+++|+.|++++|.+....+  ......+..+. +..
T Consensus       205 ~l~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~-l~~  274 (466)
T 1o6v_A          205 IATNNQISDITP-LG-ILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK-LGA  274 (466)
T ss_dssp             ECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE-CCS
T ss_pred             EecCCccccccc-cc-ccCCCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE-CCC
Confidence            355555444333 44 556666666666655431     235556666666666665433211  11111111110 011


Q ss_pred             hhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccc
Q 041391          579 TQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNW  657 (704)
Q Consensus       579 ~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~  657 (704)
                      + ....++. +..+ ++|+.|++++|.+..++. +..+ +|+.|+|++|.+..++.  ...+++|+.|++.++..-.+  
T Consensus       275 n-~l~~~~~-~~~l-~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  346 (466)
T 1o6v_A          275 N-QISNISP-LAGL-TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--  346 (466)
T ss_dssp             S-CCCCCGG-GTTC-TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             C-ccCcccc-ccCC-CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence            1 1112222 3333 366777777666666554 3444 77777777777655544  34567777777777643322  


Q ss_pred             ccccCcCCCccEEeeecCC
Q 041391          658 RELQALFPDLEYLEKFNCP  676 (704)
Q Consensus       658 ~~l~~~~p~L~~L~i~~C~  676 (704)
                      . ....+++|+.|++.+|.
T Consensus       347 ~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          347 S-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             G-GGTTCTTCCEEECCSSC
T ss_pred             h-hhccCCCCCEEeCCCCc
Confidence            1 12467888888888774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=2.5e-19  Score=209.22  Aligned_cols=235  Identities=18%  Similarity=0.129  Sum_probs=148.9

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG  494 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~  494 (704)
                      .|++|++++|...+..|..+..+++|++|+|++|...+.+| ..+..+++|++|++++|.+....+..+..+++|+.|  
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L--  459 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL--  459 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE--
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc--
Confidence            45555555554333334555666666666666654444444 345566666666666666554445556666666666  


Q ss_pred             cccccCCCCCCc--cc-hhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccch
Q 041391          495 FLVTDAKPNDKI--CT-LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNK  571 (704)
Q Consensus       495 ~~~~~ls~n~l~--~~-~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  571 (704)
                          ++++|.+.  +. +..+. .+++|+.|++++|.+....+   ..+.++++|+.|++++|.+....           
T Consensus       460 ----~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~-----------  520 (680)
T 1ziw_A          460 ----MLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNNLARLW-----------  520 (680)
T ss_dssp             ----ECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCGGGG-----------
T ss_pred             ----hhccccccccccCCcccc-cCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCCccccc-----------
Confidence                35555443  12 23344 66667777776666654322   34566666777777666643210           


Q ss_pred             hhHhhHhhhcCCCCC----CcccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEE
Q 041391          572 KQEDEAETQGKGGLD----GTFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL  645 (704)
Q Consensus       572 ~l~~~~~~~~~~~l~----~~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L  645 (704)
                                ...+|    ..+..+ ++|+.|+|++|.+..+|.. +..+ +|+.|+|++|+++.+|...+..+++|+.|
T Consensus       521 ----------~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  589 (680)
T 1ziw_A          521 ----------KHANPGGPIYFLKGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL  589 (680)
T ss_dssp             ----------STTSTTSCCCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ----------hhhccCCcchhhcCC-CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence                      01111    124455 5899999999999999864 6667 99999999999999999888889999999


Q ss_pred             ecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391          646 RLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       646 ~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP  682 (704)
                      +|+++..-.+....+...+++|+.|++.+||-...++
T Consensus       590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999743332222221268999999999998765554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=4e-20  Score=212.92  Aligned_cols=285  Identities=19%  Similarity=0.174  Sum_probs=147.1

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      |..+++|+.|++++|.+.          .+| .+..+++|++|++++|. ++.+|. + .+++|++|++++|.....+  
T Consensus       281 ~~~l~~L~~L~l~~~~~~----------~l~-~l~~~~~L~~L~l~~n~-l~~lp~-~-~l~~L~~L~l~~n~~~~~~--  344 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIK----------YLE-DVPKHFKWQSLSIIRCQ-LKQFPT-L-DLPFLKSLTLTMNKGSISF--  344 (606)
T ss_dssp             CGGGTTCSEEEEESCCCC----------CCC-CCCTTCCCSEEEEESCC-CSSCCC-C-CCSSCCEEEEESCSSCEEC--
T ss_pred             cccCCCCCEEEecCccch----------hhh-hccccccCCEEEccccc-Cccccc-C-CCCccceeeccCCcCccch--
Confidence            444555555555555432          222 34445555555555543 244442 3 4555555555544333322  


Q ss_pred             cccccCCCcEEEccCcccccc--cCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhh
Q 041391          458 GLDSLKKLTYLDISECYLIEY--MPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEK  535 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~--lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~  535 (704)
                      .++.+++|++|++++|.+.+.  +|..++.+++|++|      ++++|.+......+. .+++|+.|++++|.+.+..+.
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L------~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~  417 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL------DLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEF  417 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE------ECCSCSEEEECCCCT-TCTTCCEEECTTSEEESTTTT
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe------ECCCCccccchhhcc-CCCCCCeeECCCCccCCccCh
Confidence            233444444444444443322  13334444444444      244444333333333 444444444444443322110


Q ss_pred             HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC-CCCCcccccccceeEEEEEcCCCCCC-cccC
Q 041391          536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG-GLDGTFGQKDRLLEKLDLHCFPLESL-PNWL  613 (704)
Q Consensus       536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l  613 (704)
                        ..+..+++|+.|++++|.+....+........+..+. +..+...+ .+|..+..+ ++|+.|+|++|.+..+ |.++
T Consensus       418 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          418 --SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK-MAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             --TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE-CTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTT
T ss_pred             --hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE-CCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhh
Confidence              1234444444444444443322222111111111111 01111111 245566666 4999999999998766 4667


Q ss_pred             CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCC-CccEEeeecCCCCCCCCCCCCCcccc
Q 041391          614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFP-DLEYLEKFNCPMISFFPCDANGVWIK  691 (704)
Q Consensus       614 ~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p-~L~~L~i~~C~~L~~lP~~~~~~W~~  691 (704)
                      ..+ +|++|+|++|++..++......+++|+.|+|+++..-.+... + ..+| +|+.|++.+||-...++..+...|..
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~-~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L-QHFPKSLAFFNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G-GGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H-hhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence            777 999999999999888666677789999999999763322221 2 3566 69999999998766666532223443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=4.3e-20  Score=210.73  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             CCCCcccccccceeEEEEEcCCCC--CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccc
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLE--SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWREL  660 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~--~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l  660 (704)
                      ..|..+..+ ++|+.|+|++|.+.  .+|.++..+ +|+.|+|++|.+..++......+++|+.|+|+++..-.+....+
T Consensus       436 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          436 AFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             CCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            344555555 48888888888764  577777777 88888888888877765556678889999888875333211112


Q ss_pred             cCcCCCccEEeeecCCCCCCCCCC
Q 041391          661 QALFPDLEYLEKFNCPMISFFPCD  684 (704)
Q Consensus       661 ~~~~p~L~~L~i~~C~~L~~lP~~  684 (704)
                       ..+++|+.|++.+|+--..+|..
T Consensus       515 -~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          515 -DRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             -TTCTTCCEEECCSSCBCCCTTTT
T ss_pred             -hcccCCcEEEecCCcccCCCcch
Confidence             46789999999998765555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=1e-18  Score=194.84  Aligned_cols=284  Identities=21%  Similarity=0.199  Sum_probs=161.2

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+......+..+.  .+..+++|++|++++|.++.          +|. +..+++|++|++++| .+..++. ++++
T Consensus        47 ~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~----------~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l  111 (466)
T 1o6v_A           47 QVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD----------ITP-LKNLTKLVDILMNNN-QIADITP-LANL  111 (466)
T ss_dssp             TCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC----------CGG-GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred             cccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC----------chh-hhccccCCEEECCCC-ccccChh-hcCC
Confidence            4555555544444432  26789999999999998763          344 899999999999998 4667776 9999


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc---------------cccCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL---------------VTDAKPN  503 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~---------------~~~ls~n  503 (704)
                      ++|++|++++| .+..+|. +.++++|++|++++|.+.. +|. ++.+++|++|....               .-++++|
T Consensus       112 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          112 TNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  187 (466)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccCC-Chh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence            99999999998 4556664 8999999999999998543 443 66666666663100               0023333


Q ss_pred             CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391          504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG  583 (704)
Q Consensus       504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (704)
                      .+.. ++.+. .+++|+.|++++|.+.+..+     +..+++|+.|++++|.+... + .......+..+ .+..+. ..
T Consensus       188 ~l~~-~~~l~-~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L-~l~~n~-l~  256 (466)
T 1o6v_A          188 KVSD-ISVLA-KLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI-G-TLASLTNLTDL-DLANNQ-IS  256 (466)
T ss_dssp             CCCC-CGGGG-GCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE-ECCSSC-CC
T ss_pred             cCCC-Chhhc-cCCCCCEEEecCCccccccc-----ccccCCCCEEECCCCCcccc-h-hhhcCCCCCEE-ECCCCc-cc
Confidence            3222 12233 44444444444444332211     33444455555554443221 0 00000000000 001111 11


Q ss_pred             CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA  662 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~  662 (704)
                      .++. +..+ ++|+.|++++|.+..+|. +..+ +|+.|+|++|.+..++.  ...+++|+.|+|+++..-.+.  . ..
T Consensus       257 ~~~~-~~~l-~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~-~~  328 (466)
T 1o6v_A          257 NLAP-LSGL-TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--P-VS  328 (466)
T ss_dssp             CCGG-GTTC-TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--G-GG
T ss_pred             cchh-hhcC-CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch--h-hc
Confidence            1111 3333 356666666666655554 4444 66666666666655544  344667777777666433211  1 24


Q ss_pred             cCCCccEEeeecCCCCCCC
Q 041391          663 LFPDLEYLEKFNCPMISFF  681 (704)
Q Consensus       663 ~~p~L~~L~i~~C~~L~~l  681 (704)
                      .+++|+.|++.+| .++.+
T Consensus       329 ~l~~L~~L~l~~n-~l~~~  346 (466)
T 1o6v_A          329 SLTKLQRLFFYNN-KVSDV  346 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCC
T ss_pred             cCccCCEeECCCC-ccCCc
Confidence            6788888888877 45544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=204.98  Aligned_cols=264  Identities=17%  Similarity=0.143  Sum_probs=158.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.+         .|..|.++++|++|+|++|......|..|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc---------CcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            456666666666666666788888888888888876532         13567788888888888875333334668888


Q ss_pred             ccCcEEeeecccCCCcCCc-cccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccchh-hHHhC
Q 041391          439 SNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNS  515 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~  515 (704)
                      ++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++|      ++++|.+....+ .+. .
T Consensus       100 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L------~l~~n~l~~~~~~~~~-~  171 (570)
T 2z63_A          100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------DLSSNKIQSIYCTDLR-V  171 (570)
T ss_dssp             TTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE------ECTTSCCCEECGGGGH-H
T ss_pred             cccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE------eCcCCccceecHHHcc-c
Confidence            888888888874 444443 57888888888888887655 467778888888888      477777665543 333 5


Q ss_pred             CCCC----cEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC-------------------------CCCCcccc
Q 041391          516 LKEL----RKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS-------------------------KCRNQEGN  566 (704)
Q Consensus       516 L~~L----~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~-------------------------~~~~~~~~  566 (704)
                      +++|    ..|++++|.+....+   ..+..+ +|+.|++++|....                         ........
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~---~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQP---GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECT---TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred             hhccchhhhhcccCCCCceecCH---HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence            5555    566666666543222   222222 45555555442110                         00000000


Q ss_pred             cccchhhH-------hhHhh-hcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCC
Q 041391          567 NEHNKKQE-------DEAET-QGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKK  638 (704)
Q Consensus       567 ~~~~~~l~-------~~~~~-~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~  638 (704)
                      ......+.       ....+ ...+.++..+..+ ++|+.|++++|.+..+|.++..++|++|++++|.+..+|..   .
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~---~  323 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---K  323 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBC---B
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcc---c
Confidence            00000000       00000 1223345555555 48888888888888888877666888888888887766652   2


Q ss_pred             CCCcCEEec
Q 041391          639 YSTVKVLRL  647 (704)
Q Consensus       639 f~~L~~L~L  647 (704)
                      +++|+.|.+
T Consensus       324 l~~L~~L~l  332 (570)
T 2z63_A          324 LKSLKRLTF  332 (570)
T ss_dssp             CSSCCEEEE
T ss_pred             ccccCEEeC
Confidence            344444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=1.9e-19  Score=191.46  Aligned_cols=243  Identities=18%  Similarity=0.125  Sum_probs=173.6

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      ++|++|++++|.++.+         .|..|..+++|++|+|++|......|..++++++|++|+|++| .+..+|..+. 
T Consensus        54 ~~l~~L~l~~n~i~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-  122 (332)
T 2ft3_A           54 PDTTLLDLQNNDISEL---------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-  122 (332)
T ss_dssp             TTCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC-
T ss_pred             CCCeEEECCCCcCCcc---------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc-
Confidence            5788888888876531         1456788888888888887544344677888888888888887 4557777665 


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCcc--chh-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC--TLE-DLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                       ++|++|++++|.+....+..++.+++|++|      ++++|.+..  ..+ .+. .+ +|+.|++++|.+... +   .
T Consensus       123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~l-~---~  189 (332)
T 2ft3_A          123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCI------EMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTGI-P---K  189 (332)
T ss_dssp             -TTCCEEECCSSCCCCCCSGGGSSCSSCCEE------ECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSSC-C---S
T ss_pred             -ccCCEEECCCCccCccCHhHhCCCccCCEE------ECCCCccccCCCCccccc-CC-ccCEEECcCCCCCcc-C---c
Confidence             788888888887654444457788888888      577777653  223 333 55 788888888876642 2   1


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL-  616 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l-  616 (704)
                      .+  .++|+.|++++|.+...                         .+..+..+ ++|+.|+|++|.+..++. ++..+ 
T Consensus       190 ~~--~~~L~~L~l~~n~i~~~-------------------------~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~  241 (332)
T 2ft3_A          190 DL--PETLNELHLDHNKIQAI-------------------------ELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLP  241 (332)
T ss_dssp             SS--CSSCSCCBCCSSCCCCC-------------------------CTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred             cc--cCCCCEEECCCCcCCcc-------------------------CHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCC
Confidence            22  26788888888775321                         22345555 489999999999988765 66667 


Q ss_pred             CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC-----cCCCccEEeeecCCC
Q 041391          617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA-----LFPDLEYLEKFNCPM  677 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~-----~~p~L~~L~i~~C~~  677 (704)
                      +|++|+|++|.+..+|... ..+++|+.|+|+++..-.+....+..     .++.|+.|++.++|-
T Consensus       242 ~L~~L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          242 TLRELHLDNNKLSRVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTG-GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             CCCEEECCCCcCeecChhh-hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            9999999999999988764 45899999999987654444333332     267899999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=4.2e-19  Score=197.11  Aligned_cols=222  Identities=19%  Similarity=0.153  Sum_probs=175.8

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC-cccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP-KGLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP-~~i~  460 (704)
                      ++|++|+|++|.++.+         .|..|.++++|++|+|++|......|..+.++++|++|+|++|.. ..+| ..+.
T Consensus        75 ~~l~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~  144 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMI---------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFE  144 (452)
T ss_dssp             TTCSEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSS
T ss_pred             CCccEEECcCCcCceE---------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhc
Confidence            6899999999987642         256789999999999999854444457799999999999999854 4555 4588


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-h-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-E-DLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      .+++|++|++++|.+....+..+..+++|++|      ++++|+....+ + .+. .+++|+.|++++|.+... +    
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~~-~----  212 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRL------DLGELKKLEYISEGAFE-GLFNLKYLNLGMCNIKDM-P----  212 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEE------ECCCCTTCCEECTTTTT-TCTTCCEEECTTSCCSSC-C----
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEE------eCCCCCCccccChhhcc-CCCCCCEEECCCCccccc-c----
Confidence            89999999999998765444568899999999      57775444444 3 355 899999999999988643 2    


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-  616 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-  616 (704)
                      .+..+++|+.|+|++|.+...                         .|..+..+ ++|+.|+|++|.+..+ |..+..+ 
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEI-------------------------RPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEE-------------------------CGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccccccccEEECcCCcCccc-------------------------CcccccCc-cCCCEEEeCCCcCceECHHHhcCCC
Confidence            477889999999999885421                         23445556 4899999999998766 4556666 


Q ss_pred             CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      +|+.|+|++|++..++...+..+++|+.|+|.+++
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            99999999999999998888889999999998865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=5.1e-19  Score=195.77  Aligned_cols=222  Identities=19%  Similarity=0.189  Sum_probs=176.4

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc-ccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK-GLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~-~i~  460 (704)
                      +++++|+|++|.++.+         .+..|.++++|++|+|++|......+..|.++++|++|+|++|. +..+|. .+.
T Consensus        64 ~~l~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  133 (440)
T 3zyj_A           64 TNTRLLNLHENQIQII---------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFV  133 (440)
T ss_dssp             TTCSEEECCSCCCCEE---------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred             CCCcEEEccCCcCCee---------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhh
Confidence            6899999999987642         24678999999999999985444444679999999999999985 455554 689


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-h-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-E-DLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      .+++|++|++++|.+....+..+..+++|++|      ++++|+....+ + .+. .+++|+.|++++|.+.. ++    
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L------~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~-~~----  201 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRL------DLGELKRLSYISEGAFE-GLSNLRYLNLAMCNLRE-IP----  201 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEE------ECCCCTTCCEECTTTTT-TCSSCCEEECTTSCCSS-CC----
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEe------CCCCCCCcceeCcchhh-cccccCeecCCCCcCcc-cc----
Confidence            99999999999999765555578899999999      57775544444 3 355 89999999999998763 33    


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCc-ccCCCC-
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWLSGL-  616 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l-  616 (704)
                      .+..+++|+.|+|++|.+...                         .|..+..+ ++|+.|+|++|.+..++ ..+..+ 
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAI-------------------------RPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEE-------------------------CTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             ccCCCcccCEEECCCCccCcc-------------------------ChhhhccC-ccCCEEECCCCceeEEChhhhcCCC
Confidence            478889999999999985421                         23445555 48999999999987765 456666 


Q ss_pred             CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      +|+.|+|++|++..++...+..+++|+.|+|.+++
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            99999999999999998888889999999998865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=1.4e-19  Score=190.98  Aligned_cols=223  Identities=19%  Similarity=0.203  Sum_probs=172.9

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhcc-------CCcccceeeeeccCCCCCCchhh--hccccCcEEeeecccCCCc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELK-------NMSALRLLSLQGVYGIREIPSSI--ANLSNLRVLDLRCCYYLTK  454 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-------~L~~Lr~L~Ls~n~~l~~lP~~l--~~L~~L~~LdLs~c~~l~~  454 (704)
                      |++|+|++|.++..        .+|..+.       .+++|++|+|++|...+.+|..+  +.+++|++|+|++|...+ 
T Consensus        65 L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-  135 (312)
T 1wwl_A           65 IKSLSLKRLTVRAA--------RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-  135 (312)
T ss_dssp             HHHCCCCEEEEEEE--------ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-
T ss_pred             HhhcccccccccCC--------CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-
Confidence            88889998876422        2344443       78999999999997666788876  899999999999985544 


Q ss_pred             CCcccccc-----CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc---hhhH--HhCCCCCcEEEE
Q 041391          455 LPKGLDSL-----KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LEDL--GNSLKELRKLSI  524 (704)
Q Consensus       455 lP~~i~~L-----~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~---~~~l--~~~L~~L~~L~L  524 (704)
                      +|..++.+     ++|++|++++|.+.+..|..++.+++|++|      ++++|.+.+.   ++.+  . .+++|+.|++
T Consensus       136 ~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L  208 (312)
T 1wwl_A          136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL------DLSDNPELGERGLISALCPL-KFPTLQVLAL  208 (312)
T ss_dssp             SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE------ECCSCTTCHHHHHHHHSCTT-SCTTCCEEEC
T ss_pred             hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE------ECCCCCcCcchHHHHHHHhc-cCCCCCEEEC
Confidence            48888887     899999999999877766889999999999      6999987654   2344  5 8899999999


Q ss_pred             EeeCCCCchhhHH-HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEc
Q 041391          525 YVNNNAIPIEKLS-ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHC  603 (704)
Q Consensus       525 ~~n~~~~~~~~l~-~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~  603 (704)
                      ++|.+.. ++.++ ..+..+++|+.|++++|.+....+.                        ..+..+ ++|+.|+|++
T Consensus       209 ~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~~l-~~L~~L~Ls~  262 (312)
T 1wwl_A          209 RNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------PSCDWP-SQLNSLNLSF  262 (312)
T ss_dssp             TTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------SCCCCC-TTCCEEECTT
T ss_pred             CCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------hhhhhc-CCCCEEECCC
Confidence            9998874 33333 3456889999999999986432100                        122223 5899999999


Q ss_pred             CCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          604 FPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       604 ~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      |.+..+|.++. .+|++|+|++|+++.+|.  ...+++|+.|+|.+++
T Consensus       263 N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          263 TGLKQVPKGLP-AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCSSCCSSCC-SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCT
T ss_pred             CccChhhhhcc-CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCC
Confidence            99999998776 589999999999988865  5567888888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=2.6e-19  Score=188.04  Aligned_cols=224  Identities=18%  Similarity=0.152  Sum_probs=163.1

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhH-hccCCcccceeeeeccCCCCCC---chhhhccccCcEEeeecccCCCcCCc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLK-ELKNMSALRLLSLQGVYGIREI---PSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~-~l~~L~~Lr~L~Ls~n~~l~~l---P~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      ++|++|++++|.++          .+|. .|.++++|++|+|++|. +..+   |..+..+++|++|+|++| .+..+|.
T Consensus        28 ~~l~~L~L~~n~l~----------~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~   95 (306)
T 2z66_A           28 SSATRLELESNKLQ----------SLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS   95 (306)
T ss_dssp             TTCCEEECCSSCCC----------CCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred             CCCCEEECCCCccC----------ccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChh
Confidence            57889999998775          3343 36888999999999874 4444   567778899999999987 4567888


Q ss_pred             cccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      .+..+++|++|++++|.+....+ ..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+.+.  ..
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~  167 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FL  167 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE------ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EE
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhccCCCEE------ECCCCcCCccchhhcccCcCCCEEECCCCccccc--cc
Confidence            88889999999999988654433 467888889988      5888887766654333788888998888876531  12


Q ss_pred             HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCC
Q 041391          537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSG  615 (704)
Q Consensus       537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~  615 (704)
                      +..+..+++|+.|++++|.+...                         .|..+..+ ++|+.|+|++|.+..++. .+..
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQL-------------------------SPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEE-------------------------CTTTTTTC-TTCCEEECTTSCCSBCCSGGGTT
T ss_pred             hhHHhhCcCCCEEECCCCCcCCc-------------------------CHHHhcCC-CCCCEEECCCCccCccChhhccC
Confidence            24577788888888888875321                         23344455 478888888888877664 4555


Q ss_pred             C-CeeEEEEEcCCCCCcCCCccCCCC-CcCEEecCCCc
Q 041391          616 L-NLRKLYIRGGQLRSLQGDTHKKYS-TVKVLRLRYLN  651 (704)
Q Consensus       616 l-~L~~L~Ls~n~l~~lp~~~~~~f~-~L~~L~L~~l~  651 (704)
                      + +|+.|+|++|.+...+......++ +|+.|+|++++
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            5 888888888888776655555564 78888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=2.1e-19  Score=188.76  Aligned_cols=243  Identities=22%  Similarity=0.207  Sum_probs=190.7

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hhccccCcEEeeecccCC--CcCCccccc
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IANLSNLRVLDLRCCYYL--TKLPKGLDS  461 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~~L~~L~~LdLs~c~~l--~~lP~~i~~  461 (704)
                      +.++.+++.++          .+|..+  .++|++|+|++| .+..+|.. +.++++|++|+|++|...  +..|..+..
T Consensus        10 ~~l~c~~~~l~----------~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   76 (306)
T 2z66_A           10 TEIRCNSKGLT----------SVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG   76 (306)
T ss_dssp             TEEECCSSCCS----------SCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred             CEEEcCCCCcc----------cCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence            46788877665          445444  368999999998 46678765 689999999999998543  223677888


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh--hHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE--DLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~--~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      +++|++|++++|.+. .+|..+..+++|++|      ++++|.+....+  .+. .+++|+.|++++|.+....+   ..
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~---~~  145 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFN---GI  145 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEE------ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECST---TT
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEE------ECCCCcccccccchhhh-hccCCCEEECCCCcCCccch---hh
Confidence            999999999999855 678789999999999      589998877654  566 89999999999998765443   56


Q ss_pred             hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-C
Q 041391          540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-N  617 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~  617 (704)
                      +..+++|++|++++|.+..                        ..+|..+..+ ++|++|+|++|.+..+ |.++..+ +
T Consensus       146 ~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQE------------------------NFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGG------------------------GEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccCcCCCEEECCCCcccc------------------------ccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            7889999999999887421                        0134555566 4999999999999877 5677777 9


Q ss_pred             eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcC-CCccEEeeecCCC
Q 041391          618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALF-PDLEYLEKFNCPM  677 (704)
Q Consensus       618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~-p~L~~L~i~~C~~  677 (704)
                      |+.|+|++|.+..++......+++|+.|+|+++.........+ ..+ ++|++|++.+|+-
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCE
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCe
Confidence            9999999999999888777789999999999986544222223 345 5999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=2.8e-19  Score=206.17  Aligned_cols=97  Identities=25%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC
Q 041391          585 LDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA  662 (704)
Q Consensus       585 l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~  662 (704)
                      +|..+..+ ++|+.|+|++|.+..+ |..+..+ +|++|+|++|++..++...+..+++|+.|+|+++....+....+..
T Consensus       486 ~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          486 LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             Cchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            45556666 4899999999998876 4567777 9999999999999998888888999999999887644433333333


Q ss_pred             cCCCccEEeeecCCCCCCCC
Q 041391          663 LFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       663 ~~p~L~~L~i~~C~~L~~lP  682 (704)
                      .+++|+.|++.++|--.++.
T Consensus       565 l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          565 FPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCTTCCEEECTTCCBCCSGG
T ss_pred             hhCcCCEEEeeCCCCcccCC
Confidence            34689999999987644433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=9.3e-19  Score=194.35  Aligned_cols=224  Identities=23%  Similarity=0.224  Sum_probs=181.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~  437 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.+         .|..|.++++|++|+|++|. +..+|. .+.+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  145 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---------EVGAFNGLASLNTLELFDNW-LTVIPSGAFEY  145 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc---------ChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence            566777777777777778899999999999999987642         24678999999999999985 566664 4889


Q ss_pred             cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      +++|++|+|++|......+..+.++++|++|++++|...+.+|. .+..+++|++|      ++++|.+... +.+. .+
T Consensus       146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------~L~~n~l~~~-~~~~-~l  217 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL------NLGMCNIKDM-PNLT-PL  217 (452)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE------ECTTSCCSSC-CCCT-TC
T ss_pred             cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE------ECCCCccccc-cccc-cc
Confidence            99999999999855433344689999999999999777777776 48899999999      6999987754 6777 89


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.+.+..+   ..+.++++|+.|+|++|.+...                         .+..+..+ ++|
T Consensus       218 ~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l-~~L  268 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRP---GSFHGLSSLKKLWVMNSQVSLI-------------------------ERNAFDGL-ASL  268 (452)
T ss_dssp             TTCCEEECTTSCCSEECG---GGGTTCTTCCEEECTTSCCCEE-------------------------CTTTTTTC-TTC
T ss_pred             ccccEEECcCCcCcccCc---ccccCccCCCEEEeCCCcCceE-------------------------CHHHhcCC-CCC
Confidence            999999999999876444   5789999999999999985421                         23344555 499


Q ss_pred             eEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCC
Q 041391          597 EKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLR  629 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~  629 (704)
                      +.|+|++|.+..+|... ..+ +|+.|+|++|.+.
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            99999999999888654 455 9999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.78  E-value=3.1e-18  Score=190.25  Aligned_cols=164  Identities=17%  Similarity=0.144  Sum_probs=126.0

Q ss_pred             cceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhh
Q 041391          357 LLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA  436 (704)
Q Consensus       357 ~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~  436 (704)
                      ...++.+....+.+..+.   |..+++|++|++++|.++.          ++  ++.+++|++|++++| .+..+|  ++
T Consensus        63 l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~----------~~--~~~l~~L~~L~L~~N-~l~~l~--~~  124 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN----------LD--VTPLTKLTYLNCDTN-KLTKLD--VS  124 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC----------CC--CTTCTTCCEEECCSS-CCSCCC--CT
T ss_pred             cCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce----------ee--cCCCCcCCEEECCCC-cCCeec--CC
Confidence            345666666666665542   7889999999999997763          22  788899999999998 455665  88


Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      .+++|++|++++|.. ..+|  ++.+++|++|++++|...+.+  .++.+++|++|      ++++|.+.+. + +. .+
T Consensus       125 ~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L------~ls~n~l~~l-~-l~-~l  190 (457)
T 3bz5_A          125 QNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL------DCSFNKITEL-D-VS-QN  190 (457)
T ss_dssp             TCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE------ECCSSCCCCC-C-CT-TC
T ss_pred             CCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE------ECCCCcccee-c-cc-cC
Confidence            899999999998854 4454  788899999999998766666  37788899999      5888887764 3 66 88


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS  558 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~  558 (704)
                      ++|+.|++++|.+.+.      .+..+++|+.|++++|.+..
T Consensus       191 ~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             TTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccc
Confidence            8999999998887653      37788899999998888543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=1.7e-18  Score=191.46  Aligned_cols=223  Identities=20%  Similarity=0.223  Sum_probs=179.5

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~  437 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.+         .+..|.++++|++|+|++|. +..+|. .+..
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  134 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---------EIGAFNGLANLNTLELFDNR-LTTIPNGAFVY  134 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---------CGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---------ChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence            456666667777777778899999999999999987642         24678999999999999984 666664 6899


Q ss_pred             cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      +++|++|+|++|......+..+.++++|++|++++|.....++. .+..+++|++|      ++++|.+.. ++.+. .+
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------~L~~n~l~~-~~~~~-~l  206 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL------NLAMCNLRE-IPNLT-PL  206 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE------ECTTSCCSS-CCCCT-TC
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee------cCCCCcCcc-ccccC-CC
Confidence            99999999999855444444789999999999999777777776 48899999999      599998764 45677 89


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.+....+   ..+.++++|+.|+|++|.+...                         .+..+..+ ++|
T Consensus       207 ~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l-~~L  257 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRP---GSFQGLMHLQKLWMIQSQIQVI-------------------------ERNAFDNL-QSL  257 (440)
T ss_dssp             SSCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEE-------------------------CTTSSTTC-TTC
T ss_pred             cccCEEECCCCccCccCh---hhhccCccCCEEECCCCceeEE-------------------------ChhhhcCC-CCC
Confidence            999999999998875433   5788999999999999885421                         23344555 489


Q ss_pred             eEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCC
Q 041391          597 EKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQL  628 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l  628 (704)
                      +.|+|++|.+..+|.. +..+ +|+.|+|++|.+
T Consensus       258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            9999999999988865 4455 999999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=185.72  Aligned_cols=251  Identities=21%  Similarity=0.169  Sum_probs=184.7

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-c
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-L  459 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i  459 (704)
                      ++|++|++++|.++.          +| ..|..+++|++|+|++|......|..++++++|++|+|++|. +..+|.. +
T Consensus        52 ~~L~~L~l~~n~i~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  120 (353)
T 2z80_A           52 EAVKSLDLSNNRITY----------ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF  120 (353)
T ss_dssp             TTCCEEECTTSCCCE----------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred             ccCcEEECCCCcCcc----------cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence            589999999998763          33 368999999999999985444445679999999999999984 4566665 8


Q ss_pred             cccCCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCC-Cccchh-hHHhCCCCCcEEEEEeeCCCCchhh
Q 041391          460 DSLKKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPND-KICTLE-DLGNSLKELRKLSIYVNNNAIPIEK  535 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~-l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~  535 (704)
                      +++++|++|++++|.+. .+|.  .++.+++|++|      ++++|. +....+ .+. .+++|+.|++++|.+.+..+ 
T Consensus       121 ~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L------~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~-  191 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL------RVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEP-  191 (353)
T ss_dssp             TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE------EEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECT-
T ss_pred             CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE------ECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCH-
Confidence            89999999999999865 5665  68899999999      587774 444433 455 89999999999998875433 


Q ss_pred             HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCccc-CC
Q 041391          536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW-LS  614 (704)
Q Consensus       536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~-l~  614 (704)
                        ..+..+++|++|++++|.+..                          +|..+....++|+.|++++|.+..++.. +.
T Consensus       192 --~~l~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          192 --KSLKSIQNVSHLILHMKQHIL--------------------------LLEIFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             --TTTTTCSEEEEEEEECSCSTT--------------------------HHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             --HHHhccccCCeecCCCCcccc--------------------------chhhhhhhcccccEEECCCCccccccccccc
Confidence              568889999999999988521                          1222222235899999999988766422 11


Q ss_pred             ---CC-CeeEEEEEcCCCCC-----cCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391          615 ---GL-NLRKLYIRGGQLRS-----LQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       615 ---~l-~L~~L~Ls~n~l~~-----lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP  682 (704)
                         .. .++.++|+++.+..     +|.. ...+++|+.|+|+++..-.+... +...+++|++|++.+|+-...+|
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccchhhccccccccccCcchhhhHHH-HhcccCCCEEECCCCCCCccCHH-HHhcCCCCCEEEeeCCCccCcCC
Confidence               12 78888888887743     3322 34589999999998754332221 11568999999999997655554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=1.8e-18  Score=179.70  Aligned_cols=203  Identities=22%  Similarity=0.186  Sum_probs=144.5

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC-Cccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-PKGL  459 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-P~~i  459 (704)
                      .++|++|++++|.++.+         .+..|..+++|++|+|++|......|..+.++++|++|++++|..+..+ |..+
T Consensus        31 ~~~l~~L~l~~n~i~~~---------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHV---------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             CTTCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCCceEEEeeCCcCCcc---------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            46888888888877532         1345788888888888887543333677888888888888887645555 6678


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      ..+++|++|++++|.+....|..+..+++|++|      ++++|.+....+. +. .+++|+.|++++|.+....+   .
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~---~  171 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------YLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPE---R  171 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECT---T
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE------ECCCCcccccCHhHhc-cCCCccEEECCCCcccccCH---H
Confidence            888888888888888776666778888888888      5888877766654 44 78888888888887653222   3


Q ss_pred             HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391          539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL-  616 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l-  616 (704)
                      .+..+++|+.|++++|.+...                         .|..+..+ ++|+.|+|++|.+..+|. ++..+ 
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHV-------------------------HPHAFRDL-GRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEE-------------------------CTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhcCccccCEEECCCCccccc-------------------------CHhHccCc-ccccEeeCCCCcCCcCCHHHcccCc
Confidence            467778888888887774321                         23344444 378888888877776663 35555 


Q ss_pred             CeeEEEEEcCCC
Q 041391          617 NLRKLYIRGGQL  628 (704)
Q Consensus       617 ~L~~L~Ls~n~l  628 (704)
                      +|+.|+|++|++
T Consensus       226 ~L~~L~l~~N~~  237 (285)
T 1ozn_A          226 ALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCE
T ss_pred             ccCEEeccCCCc
Confidence            788888887776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=8.6e-19  Score=184.84  Aligned_cols=203  Identities=19%  Similarity=0.178  Sum_probs=164.6

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhc--cCCcccceeeeeccCCCCCCchhhhcc-----ccCcEEeeecccCC
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKEL--KNMSALRLLSLQGVYGIREIPSSIANL-----SNLRVLDLRCCYYL  452 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l--~~L~~Lr~L~Ls~n~~l~~lP~~l~~L-----~~L~~LdLs~c~~l  452 (704)
                      ++++|++|+|++|.+++         .+|..+  ..+++|++|+|++|. +..+|..++.+     ++|++|+|++|...
T Consensus        93 ~l~~L~~L~L~~n~l~~---------~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~  162 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG---------TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSL  162 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS---------CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred             CcCCccEEEccCCcccc---------hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence            68999999999998763         345555  899999999999985 55668888888     99999999999766


Q ss_pred             CcCCccccccCCCcEEEccCcccccc--cCccC--CCCCCcceecccccccCCCCCCccc---hhhHHhCCCCCcEEEEE
Q 041391          453 TKLPKGLDSLKKLTYLDISECYLIEY--MPKEL--SSLSELQVLKGFLVTDAKPNDKICT---LEDLGNSLKELRKLSIY  525 (704)
Q Consensus       453 ~~lP~~i~~L~~L~~L~Ls~n~~~~~--lP~~i--~~L~~L~~L~~~~~~~ls~n~l~~~---~~~l~~~L~~L~~L~L~  525 (704)
                      +..|..++.+++|++|++++|.+.+.  +|..+  +.+++|++|      ++++|.+...   ...+...+++|+.|+++
T Consensus       163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL------ALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE------ECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE------ECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            66668899999999999999987654  34444  899999999      6999998742   33444488999999999


Q ss_pred             eeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC
Q 041391          526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP  605 (704)
Q Consensus       526 ~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~  605 (704)
                      +|.+.+..+.  ..+..+++|+.|++++|.+.                          .+|..+.   ++|++|+|++|.
T Consensus       237 ~N~l~~~~~~--~~~~~l~~L~~L~Ls~N~l~--------------------------~ip~~~~---~~L~~L~Ls~N~  285 (312)
T 1wwl_A          237 HNSLRDAAGA--PSCDWPSQLNSLNLSFTGLK--------------------------QVPKGLP---AKLSVLDLSYNR  285 (312)
T ss_dssp             TSCCCSSCCC--SCCCCCTTCCEEECTTSCCS--------------------------SCCSSCC---SEEEEEECCSSC
T ss_pred             CCcCCcccch--hhhhhcCCCCEEECCCCccC--------------------------hhhhhcc---CCceEEECCCCC
Confidence            9998764421  34566899999999999854                          2455544   589999999999


Q ss_pred             CCCCcccCCCC-CeeEEEEEcCCCCC
Q 041391          606 LESLPNWLSGL-NLRKLYIRGGQLRS  630 (704)
Q Consensus       606 l~~lP~~l~~l-~L~~L~Ls~n~l~~  630 (704)
                      +..+|. +..+ +|++|+|++|++..
T Consensus       286 l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          286 LDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCChh-HhhCCCCCEEeccCCCCCC
Confidence            999987 6677 99999999998853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=3.9e-20  Score=195.59  Aligned_cols=254  Identities=17%  Similarity=0.118  Sum_probs=180.5

Q ss_pred             CCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeec
Q 041391          369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRC  448 (704)
Q Consensus       369 ~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~  448 (704)
                      .++......+..+++|++|+|++|.++.         ..|..|..+++|++|+|++|. +..++. +..+++|++|++++
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTSCCCC---------CCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCS
T ss_pred             chhhhHHHHhccCCCCCEEECcCCccCc---------CCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcC
Confidence            3344444567778889999999997763         235678899999999999984 555554 88899999999998


Q ss_pred             ccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEee
Q 041391          449 CYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVN  527 (704)
Q Consensus       449 c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n  527 (704)
                      |. +..+|    .+++|++|++++|.+.+..+.   .+++|++|      ++++|.+....+ .+. .+++|+.|++++|
T Consensus        90 n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L------~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N  154 (317)
T 3o53_A           90 NY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNI------YLANNKITMLRDLDEG-CRSRVQYLDLKLN  154 (317)
T ss_dssp             SE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEE------ECCSSCCCSGGGBCTG-GGSSEEEEECTTS
T ss_pred             Cc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEE------ECCCCCCCCccchhhh-ccCCCCEEECCCC
Confidence            74 44443    448899999999986544333   46788888      588888877665 444 7889999999998


Q ss_pred             CCCCchhhHHHHh-ccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391          528 NNAIPIEKLSESL-EKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL  606 (704)
Q Consensus       528 ~~~~~~~~l~~~L-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l  606 (704)
                      .+....+   ..+ ..+++|+.|++++|.+..                          ++... .+ ++|++|+|++|.+
T Consensus       155 ~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~--------------------------~~~~~-~l-~~L~~L~Ls~N~l  203 (317)
T 3o53_A          155 EIDTVNF---AELAASSDTLEHLNLQYNFIYD--------------------------VKGQV-VF-AKLKTLDLSSNKL  203 (317)
T ss_dssp             CCCEEEG---GGGGGGTTTCCEEECTTSCCCE--------------------------EECCC-CC-TTCCEEECCSSCC
T ss_pred             CCCcccH---HHHhhccCcCCEEECCCCcCcc--------------------------ccccc-cc-ccCCEEECCCCcC
Confidence            8765433   233 467899999999888542                          11111 23 5899999999998


Q ss_pred             CCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCC
Q 041391          607 ESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISF  680 (704)
Q Consensus       607 ~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~  680 (704)
                      ..+|..+..+ +|+.|+|++|.+..+|... ..+++|+.|+|++++...-........+|.|+.|++.+|+.++.
T Consensus       204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          204 AFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            8888777766 9999999999998887653 45788999999887644101111224567777777775544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=1.8e-19  Score=190.49  Aligned_cols=263  Identities=17%  Similarity=0.152  Sum_probs=198.7

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.+..|..+++|++|+|++|.++.          .+. +..+++|++|+|++|. +..+|    .+
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~   98 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------TLD-LESLSTLRTLDLNNNY-VQELL----VG   98 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE----------EEE-ETTCTTCCEEECCSSE-EEEEE----EC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc----------chh-hhhcCCCCEEECcCCc-ccccc----CC
Confidence            56777777777888778889999999999999998753          222 8899999999999984 55555    45


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLK  517 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~  517 (704)
                      ++|++|++++|.. ..++.  ..+++|++|++++|.+....|..++.+++|++|      ++++|.+....+ .+...++
T Consensus        99 ~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~l~  169 (317)
T 3o53_A           99 PSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL------DLKLNEIDTVNFAELAASSD  169 (317)
T ss_dssp             TTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE------ECTTSCCCEEEGGGGGGGTT
T ss_pred             CCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEE------ECCCCCCCcccHHHHhhccC
Confidence            8999999999854 44443  347899999999999877667778899999999      699999887654 4433789


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccccccee
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE  597 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~  597 (704)
                      +|+.|++++|.+... +    ....+++|+.|++++|.+..                          +|..+..+ ++|+
T Consensus       170 ~L~~L~L~~N~l~~~-~----~~~~l~~L~~L~Ls~N~l~~--------------------------l~~~~~~l-~~L~  217 (317)
T 3o53_A          170 TLEHLNLQYNFIYDV-K----GQVVFAKLKTLDLSSNKLAF--------------------------MGPEFQSA-AGVT  217 (317)
T ss_dssp             TCCEEECTTSCCCEE-E----CCCCCTTCCEEECCSSCCCE--------------------------ECGGGGGG-TTCS
T ss_pred             cCCEEECCCCcCccc-c----cccccccCCEEECCCCcCCc--------------------------chhhhccc-Cccc
Confidence            999999999988643 2    23458999999999998542                          34445555 5999


Q ss_pred             EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecC
Q 041391          598 KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC  675 (704)
Q Consensus       598 ~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C  675 (704)
                      .|+|++|.+..+|..+..+ +|+.|+|++|.+. .........++.|+.|.+..++.+. .........+.+....-..|
T Consensus       218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~~~~~~~~~~~~~~~~~~cc  296 (317)
T 3o53_A          218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT-GQNEEECTVPTLGHYGAYCC  296 (317)
T ss_dssp             EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH-SSSSCCCSSTTCEEETTEEE
T ss_pred             EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc-CCchhccCCCceecccceee
Confidence            9999999999999988888 9999999999986 2222334457888888887766664 22222223344444445567


Q ss_pred             CCCC
Q 041391          676 PMIS  679 (704)
Q Consensus       676 ~~L~  679 (704)
                      ..|.
T Consensus       297 ~~l~  300 (317)
T 3o53_A          297 EDLP  300 (317)
T ss_dssp             BCCT
T ss_pred             ccCC
Confidence            6655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=4.8e-18  Score=176.50  Aligned_cols=219  Identities=20%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccC
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLK  463 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~  463 (704)
                      ++++.+++.++          .+|..+  .++|++|+|++|. +..+| ..+.++++|++|+|++|...+..|..+..++
T Consensus        14 ~~~~c~~~~l~----------~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   80 (285)
T 1ozn_A           14 VTTSCPQQGLQ----------AVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (285)
T ss_dssp             CEEECCSSCCS----------SCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             eEEEcCcCCcc----------cCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence            56777777654          334333  4688888888874 45555 5688888888888888755555577788888


Q ss_pred             CCcEEEccCcc-cccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          464 KLTYLDISECY-LIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       464 ~L~~L~Ls~n~-~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      +|++|++++|. +....|..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+....+   ..+..
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~  151 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTL------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRD  151 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEE------ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEE------ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhcc
Confidence            88888888887 444446678888888888      588888777655433378888888888888764333   34778


Q ss_pred             CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCC-cccCCCC-Cee
Q 041391          543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLR  619 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~  619 (704)
                      +++|+.|++++|.+..                          ++. .+..+ ++|+.|+|++|.+..+ |.++..+ +|+
T Consensus       152 l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISS--------------------------VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             CTTCCEEECCSSCCCE--------------------------ECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCccEEECCCCcccc--------------------------cCHHHhcCc-cccCEEECCCCcccccCHhHccCccccc
Confidence            8888888888887532                          122 24444 4888888888888665 6677777 888


Q ss_pred             EEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391          620 KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE  652 (704)
Q Consensus       620 ~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~  652 (704)
                      .|+|++|.+..++......+++|+.|+|++++.
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            888888888887766666788888888887653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=1.8e-17  Score=191.00  Aligned_cols=133  Identities=22%  Similarity=0.249  Sum_probs=109.5

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~  437 (704)
                      .++.+....+.+..+.+..|.++++|++|+|++|.++.+.         |.+|.++++|++|+|++|. +..+| ..|.+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~---------~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~  122 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---------DGAYQSLSHLSTLILTGNP-IQSLALGAFSG  122 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC---------TTTTTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC---------hhHhcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence            5677777788888888888999999999999999876321         3568999999999999984 66776 45899


Q ss_pred             cccCcEEeeecccCCCcCC-ccccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccc
Q 041391          438 LSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICT  508 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~  508 (704)
                      |++|++|+|++|.. ..+| ..|++|++|++|++++|.+.. .+|..++.+++|++|      ++++|.+.+.
T Consensus       123 L~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L------~L~~N~l~~~  188 (635)
T 4g8a_A          123 LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------DLSSNKIQSI  188 (635)
T ss_dssp             CTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE------ECCSSCCCEE
T ss_pred             CCCCCEEECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh------cccCcccccc
Confidence            99999999999854 5555 458999999999999998754 467778899999999      5888876554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=1.9e-17  Score=171.11  Aligned_cols=203  Identities=19%  Similarity=0.133  Sum_probs=124.8

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      ++|++|++++|.++.+.         +..|..+++|++|+|++|. +..++ ..+.++++|++|+|++|......|..+.
T Consensus        28 ~~l~~L~ls~n~l~~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG---------SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             TTCCEEECTTCCCCEEC---------TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCccEEECCCCcccccC---------HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            46888888888765321         2357778888888888874 44444 4677788888888888755444456677


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      ++++|++|++++|.+....+..++.+++|++|      ++++|.+...  +..+. .+++|+.|++++|.+....+....
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE------ECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEE------ECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhh
Confidence            88888888888887655444457777777777      4777776652  33455 777777777777766543332223


Q ss_pred             HhccCCCcc-EEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccC-CCC
Q 041391          539 SLEKFKNLL-KLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL-SGL  616 (704)
Q Consensus       539 ~L~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l  616 (704)
                      .+..++.|. .|++++|.+..                          ++...... .+|+.|+|++|.+..+|..+ ..+
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~--------------------------~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNF--------------------------IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCE--------------------------ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             hhhhccccceeeecCCCcccc--------------------------cCccccCC-CcccEEECCCCceeecCHhHhccc
Confidence            333444443 56666665321                          11112222 25666666666666665543 334


Q ss_pred             -CeeEEEEEcCCC
Q 041391          617 -NLRKLYIRGGQL  628 (704)
Q Consensus       617 -~L~~L~Ls~n~l  628 (704)
                       +|+.|+|++|++
T Consensus       224 ~~L~~L~l~~N~~  236 (276)
T 2z62_A          224 TSLQKIWLHTNPW  236 (276)
T ss_dssp             CSCCEEECCSSCB
T ss_pred             ccccEEEccCCcc
Confidence             666666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=2.3e-17  Score=170.52  Aligned_cols=208  Identities=23%  Similarity=0.214  Sum_probs=164.5

Q ss_pred             hhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCC
Q 041391          406 KFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELS  484 (704)
Q Consensus       406 ~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~  484 (704)
                      .+|..+.  ++|++|+|++|. +..++. .+.++++|++|++++|......+..+..+++|++|++++|.+....|..+.
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            3455443  579999999985 555554 799999999999999855544455789999999999999998776667899


Q ss_pred             CCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCc
Q 041391          485 SLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ  563 (704)
Q Consensus       485 ~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~  563 (704)
                      .+++|++|      ++++|.+....+ .+. .+++|+.|++++|.+...  .++..+..+++|+.|++++|.+....   
T Consensus        98 ~l~~L~~L------~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~~~---  165 (276)
T 2z62_A           98 GLSSLQKL------VAVETNLASLENFPIG-HLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIY---  165 (276)
T ss_dssp             TCTTCCEE------ECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCEEC---
T ss_pred             CCccccEE------ECCCCCccccCchhcc-cCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCcCC---
Confidence            99999999      588888877665 466 899999999999988642  12357889999999999999864311   


Q ss_pred             ccccccchhhHhhHhhhcCCCCCCccccccccee----EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCC
Q 041391          564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE----KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKK  638 (704)
Q Consensus       564 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~----~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~  638 (704)
                                            +..+..+ .+|+    .|++++|.+..+|...... +|+.|+|++|.++.+|...+..
T Consensus       166 ----------------------~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          166 ----------------------CTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             ----------------------GGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             ----------------------HHHhhhh-hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence                                  1122222 2444    8999999999888776666 9999999999999999888788


Q ss_pred             CCCcCEEecCCCc
Q 041391          639 YSTVKVLRLRYLN  651 (704)
Q Consensus       639 f~~L~~L~L~~l~  651 (704)
                      +++|+.|+|++++
T Consensus       223 l~~L~~L~l~~N~  235 (276)
T 2z62_A          223 LTSLQKIWLHTNP  235 (276)
T ss_dssp             CCSCCEEECCSSC
T ss_pred             cccccEEEccCCc
Confidence            9999999997654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.4e-17  Score=175.24  Aligned_cols=229  Identities=17%  Similarity=0.133  Sum_probs=171.3

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhh--hccccCcEEeeecccCCCcCC--
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI--ANLSNLRVLDLRCCYYLTKLP--  456 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l--~~L~~L~~LdLs~c~~l~~lP--  456 (704)
                      ...++.|.+.++.++...     ...++. +..+++|++|+|++|...+..|..+  ..+++|++|+|++|...+..|  
T Consensus        63 ~~~l~~l~l~~~~~~~~~-----~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  136 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQL-----LVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL  136 (310)
T ss_dssp             SCCCCEEEECSCCCBHHH-----HHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred             hcceeEEEEeCCcCCHHH-----HHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence            345788888888664211     112222 2345679999999997777788777  899999999999997666544  


Q ss_pred             --ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc---hhh--HHhCCCCCcEEEEEeeCC
Q 041391          457 --KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LED--LGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       457 --~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~---~~~--l~~~L~~L~~L~L~~n~~  529 (704)
                        ..+..+++|++|++++|.+....|..++.+++|++|      ++++|.+.+.   ...  +. .+++|+.|++++|.+
T Consensus       137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL------DLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGM  209 (310)
T ss_dssp             HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE------ECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCC
T ss_pred             HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE------ECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCC
Confidence              345679999999999999877777789999999999      6999987642   111  24 789999999999988


Q ss_pred             CCchhhHHHH-hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccc--ccceeEEEEEcCCC
Q 041391          530 AIPIEKLSES-LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK--DRLLEKLDLHCFPL  606 (704)
Q Consensus       530 ~~~~~~l~~~-L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l--p~~L~~L~Ls~~~l  606 (704)
                      .. ++..+.. +..+++|++|+|++|.+....                         |..+..+  +++|++|+|++|.+
T Consensus       210 ~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------------------------p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          210 ET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-------------------------NPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             CC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-------------------------CSCCSSCCCCTTCCCEECCSSCC
T ss_pred             Cc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-------------------------hhhHHhccCcCcCCEEECCCCCC
Confidence            63 3443343 578899999999999965422                         3223332  25899999999999


Q ss_pred             CCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          607 ESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       607 ~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      ..+|.++. .+|+.|+|++|++..+|.  ...+++|+.|+|++++
T Consensus       264 ~~lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          264 EQVPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CSCCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTT
T ss_pred             Cchhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCC
Confidence            99988775 399999999999988765  3557888888887754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.4e-18  Score=194.77  Aligned_cols=237  Identities=18%  Similarity=0.130  Sum_probs=169.9

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ..+++|++|+|++|.++.         ..|..|..+++|++|+|++|. +...++ ++.+++|++|+|++|. +..+|  
T Consensus        31 ~~~~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~--   96 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL--   96 (487)
T ss_dssp             TTGGGCCEEECCSSCCCC---------CCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEE--
T ss_pred             ccCCCccEEEeeCCcCCC---------CCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCC--
Confidence            345589999999997763         224678889999999999985 444444 8889999999999873 44444  


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                        ..++|++|++++|.+.+..+.   .+++|++|      ++++|.+.+..+ .+. .+++|+.|++++|.+.+..+   
T Consensus        97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L------~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~---  161 (487)
T 3oja_A           97 --VGPSIETLHAANNNISRVSCS---RGQGKKNI------YLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNF---  161 (487)
T ss_dssp             --ECTTCCEEECCSSCCCCEEEC---CCSSCEEE------ECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEG---
T ss_pred             --CCCCcCEEECcCCcCCCCCcc---ccCCCCEE------ECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcCh---
Confidence              348899999999986654433   46788888      588888887765 455 78899999999988876443   


Q ss_pred             HHhc-cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC
Q 041391          538 ESLE-KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL  616 (704)
Q Consensus       538 ~~L~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l  616 (704)
                      ..+. .+++|+.|+|++|.+..                          ++.. ..+ ++|+.|+|++|.+..+|..+..+
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~--------------------------~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~l  213 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYD--------------------------VKGQ-VVF-AKLKTLDLSSNKLAFMGPEFQSA  213 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCE--------------------------EECC-CCC-TTCCEEECCSSCCCEECGGGGGG
T ss_pred             HHHhhhCCcccEEecCCCcccc--------------------------cccc-ccC-CCCCEEECCCCCCCCCCHhHcCC
Confidence            3444 68899999998888542                          1111 123 48999999999888888777766


Q ss_pred             -CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeee
Q 041391          617 -NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKF  673 (704)
Q Consensus       617 -~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~  673 (704)
                       +|+.|+|++|.+..+|.. ...+++|+.|+|.+++...-........++.|+.|.+.
T Consensus       214 ~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             899999999998888776 34578889998888764410111112456666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=2.8e-17  Score=171.47  Aligned_cols=201  Identities=21%  Similarity=0.144  Sum_probs=151.4

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +.++++|+.++++++.++          .+|..+.  ++|++|+|++|......|..+.++++|++|+|++| .+..+|.
T Consensus         6 ~~~l~~l~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT----------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCS----------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred             ccccCCccEEECCCCCCC----------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC
Confidence            567888888999888775          3454443  67889999988544444567888899999999887 4455554


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                      . +.+++|++|++++|.+. .+|..+..+++|++|      ++++|.+....+.....+++|+.|++++|++....+   
T Consensus        73 ~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L------~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---  141 (290)
T 1p9a_G           73 D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---  141 (290)
T ss_dssp             C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE------ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---
T ss_pred             C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEE------ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh---
Confidence            3 78888999999988754 778778888888888      588888887765433388889999999888765433   


Q ss_pred             HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc-ccccccceeEEEEEcCCCCCCcccCCCC
Q 041391          538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT-FGQKDRLLEKLDLHCFPLESLPNWLSGL  616 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~~lP~~l~~l  616 (704)
                      ..+..+++|+.|+|++|.+..                          +|.. +..+ ++|+.|+|++|.+..+|.++...
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~--------------------------l~~~~~~~l-~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTE--------------------------LPAGLLNGL-ENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSC--------------------------CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhcccccCCCEEECCCCcCCc--------------------------cCHHHhcCc-CCCCEEECCCCcCCccChhhccc
Confidence            456788889999998887542                          3332 3344 48999999999999999888777


Q ss_pred             -CeeEEEEEcCCCC
Q 041391          617 -NLRKLYIRGGQLR  629 (704)
Q Consensus       617 -~L~~L~Ls~n~l~  629 (704)
                       +|+.|+|++|++.
T Consensus       195 ~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          195 HLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             ccCCeEEeCCCCcc
Confidence             8999999998873

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=2.4e-16  Score=180.82  Aligned_cols=236  Identities=21%  Similarity=0.101  Sum_probs=138.6

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      ++|++|+|++|.++          .+|.   .+++|++|+|++| .++.+|.   .+++|++|+|++| .+..+|.   .
T Consensus        61 ~~L~~L~L~~N~l~----------~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~  119 (622)
T 3g06_A           61 AHITTLVIPDNNLT----------SLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---L  119 (622)
T ss_dssp             TTCSEEEECSCCCS----------CCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---C
T ss_pred             CCCcEEEecCCCCC----------CCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---C
Confidence            56666666666554          2232   3566666666665 3555655   4566666666665 3444554   4


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                      +++|++|++++|.+. .+|..   +++|++|      ++++|.+.+...    .+.+|+.|++++|.+.. ++      .
T Consensus       120 l~~L~~L~L~~N~l~-~lp~~---l~~L~~L------~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~------~  178 (622)
T 3g06_A          120 PSGLCKLWIFGNQLT-SLPVL---PPGLQEL------SVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP------M  178 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEE------ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC------C
T ss_pred             CCCcCEEECCCCCCC-cCCCC---CCCCCEE------ECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc------c
Confidence            556666666666533 35542   3556666      366665544321    23456666666665543 11      2


Q ss_pred             cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391          542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL  621 (704)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L  621 (704)
                      .+++|+.|++++|.+.. .+...   ..+..+. +. +.....+|.    .+++|+.|+|++|.+..+|..+.  +|+.|
T Consensus       179 ~~~~L~~L~Ls~N~l~~-l~~~~---~~L~~L~-L~-~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp~~l~--~L~~L  246 (622)
T 3g06_A          179 LPSGLQELSVSDNQLAS-LPTLP---SELYKLW-AY-NNRLTSLPA----LPSGLKELIVSGNRLTSLPVLPS--ELKEL  246 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CCCCC---TTCCEEE-CC-SSCCSSCCC----CCTTCCEEECCSSCCSCCCCCCT--TCCEE
T ss_pred             cCCCCcEEECCCCCCCC-CCCcc---chhhEEE-Cc-CCcccccCC----CCCCCCEEEccCCccCcCCCCCC--cCcEE
Confidence            34566666666665432 11110   0000000 00 111222332    23689999999999998883332  89999


Q ss_pred             EEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391          622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM  677 (704)
Q Consensus       622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~  677 (704)
                      +|++|.+..+|.    .+++|+.|+|+++..-.+.  .....+++|+.|++.+|+-
T Consensus       247 ~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp--~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             ECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC--GGGGGSCTTCEEECCSCCC
T ss_pred             ECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC--HHHhhccccCEEEecCCCC
Confidence            999999988887    4789999999987533221  1125789999999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.71  E-value=1.8e-17  Score=183.95  Aligned_cols=269  Identities=17%  Similarity=0.091  Sum_probs=149.3

Q ss_pred             ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCccc-------------ceeeeec
Q 041391          358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSAL-------------RLLSLQG  424 (704)
Q Consensus       358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~L-------------r~L~Ls~  424 (704)
                      .+++.+....+.+ ...|..|.++++|++|++++|.++         ..+|..++.+.+|             ++|++++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~---------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~   80 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE---------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNN   80 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHH---------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCccc---------ccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence            3555555555555 233456788888888888887553         2467777777764             8888888


Q ss_pred             cCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCC
Q 041391          425 VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPND  504 (704)
Q Consensus       425 n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~  504 (704)
                      | .+..+|..   .++|++|++++|.. ..+|..   +++|++|++++|.+. .+|..   .++|++|      ++++|.
T Consensus        81 ~-~l~~lp~~---~~~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L------~L~~n~  142 (454)
T 1jl5_A           81 L-GLSSLPEL---PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYL------GVSNNQ  142 (454)
T ss_dssp             S-CCSCCCSC---CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEE------ECCSSC
T ss_pred             C-ccccCCCC---cCCCCEEEccCCcC-Cccccc---cCCCcEEECCCCccC-cccCC---CCCCCEE------ECcCCC
Confidence            7 46666662   36788888888744 447753   367777777777643 23321   1567777      477777


Q ss_pred             CccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCC
Q 041391          505 KICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGG  584 (704)
Q Consensus       505 l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  584 (704)
                      +.+ ++++. .+++|+.|++++|.+.+ ++.      ...+|++|++++|.+.. .+ .......+..+. +..+. ...
T Consensus       143 l~~-lp~~~-~l~~L~~L~l~~N~l~~-lp~------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~-l~~N~-l~~  209 (454)
T 1jl5_A          143 LEK-LPELQ-NSSFLKIIDVDNNSLKK-LPD------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY-ADNNS-LKK  209 (454)
T ss_dssp             CSS-CCCCT-TCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE-CCSSC-CSS
T ss_pred             CCC-CcccC-CCCCCCEEECCCCcCcc-cCC------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEE-CCCCc-CCc
Confidence            665 44566 77777777777777653 221      12467777777776543 22 111111111110 11111 112


Q ss_pred             CCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCc
Q 041391          585 LDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQAL  663 (704)
Q Consensus       585 l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~  663 (704)
                      +|    ..+.+|++|++++|.+..+|. +..+ +|++|++++|.+..+|..    +++|+.|+++++..-.     +...
T Consensus       210 l~----~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~-----l~~~  275 (454)
T 1jl5_A          210 LP----DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD-----LPEL  275 (454)
T ss_dssp             CC----CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSC-----CCCC
T ss_pred             CC----CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccc-----cCcc
Confidence            33    233578888888888888885 5566 888888888888777642    4788888887754221     2223


Q ss_pred             CCCccEEeeecCCCCCCCC
Q 041391          664 FPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       664 ~p~L~~L~i~~C~~L~~lP  682 (704)
                      +++|+.|++.+| .++.+|
T Consensus       276 ~~~L~~L~ls~N-~l~~l~  293 (454)
T 1jl5_A          276 PQSLTFLDVSEN-IFSGLS  293 (454)
T ss_dssp             CTTCCEEECCSS-CCSEES
T ss_pred             cCcCCEEECcCC-ccCccc
Confidence            456666666665 344443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=2.3e-16  Score=175.08  Aligned_cols=53  Identities=23%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             ccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          593 DRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       593 p~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      |++|+.|++++|.+..+|.++.  +|+.|++++|.+..+|.    .+++|+.|+|+++.
T Consensus       316 ~~~L~~L~Ls~N~l~~lp~~~~--~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          316 PPSLEELNVSNNKLIELPALPP--RLERLIASFNHLAEVPE----LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred             cCcCCEEECCCCccccccccCC--cCCEEECCCCccccccc----hhhhccEEECCCCC
Confidence            3466777777666666665432  67777777777766665    25667777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=8e-17  Score=169.45  Aligned_cols=197  Identities=19%  Similarity=0.196  Sum_probs=152.5

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+++|++|++++|.++          .+| .+..+++|++|+|++| .+..++. +.++++|++|+|++|. +..+| 
T Consensus        37 ~~~l~~L~~L~l~~~~i~----------~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT----------TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC----------CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred             HHHcCCcCEEEeeCCCcc----------Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-
Confidence            345778899999998765          233 5778899999999997 5677777 8899999999999884 55565 


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                      .+..+++|++|++++|.+.. +|. +..+++|++|      ++++|.+....+ +. .+++|+.|++++|.+... +   
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L------~l~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~~-~---  167 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL------YLDLNQITNISP-LA-GLTNLQYLSIGNAQVSDL-T---  167 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE------ECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCC-G---
T ss_pred             hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE------ECCCCccCcCcc-cc-CCCCccEEEccCCcCCCC-h---
Confidence            68889999999999998654 554 8889999999      588888766544 66 889999999999987643 2   


Q ss_pred             HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-
Q 041391          538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-  616 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-  616 (704)
                       .+..+++|+.|++++|.+..                          ++. +..+ ++|++|+|++|.+..++. +..+ 
T Consensus       168 -~l~~l~~L~~L~l~~n~l~~--------------------------~~~-l~~l-~~L~~L~L~~N~l~~~~~-l~~l~  217 (308)
T 1h6u_A          168 -PLANLSKLTTLKADDNKISD--------------------------ISP-LASL-PNLIEVHLKNNQISDVSP-LANTS  217 (308)
T ss_dssp             -GGTTCTTCCEEECCSSCCCC--------------------------CGG-GGGC-TTCCEEECTTSCCCBCGG-GTTCT
T ss_pred             -hhcCCCCCCEEECCCCccCc--------------------------Chh-hcCC-CCCCEEEccCCccCcccc-ccCCC
Confidence             27888999999999888543                          121 3344 489999999999888874 5666 


Q ss_pred             CeeEEEEEcCCCCCcCC
Q 041391          617 NLRKLYIRGGQLRSLQG  633 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~  633 (704)
                      +|+.|+|++|++...|.
T Consensus       218 ~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          218 NLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCCEEEEEEEEEECCCE
T ss_pred             CCCEEEccCCeeecCCe
Confidence            99999999998866554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2.7e-17  Score=184.22  Aligned_cols=224  Identities=15%  Similarity=0.129  Sum_probs=173.4

Q ss_pred             hhhHhccCC----cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc
Q 041391          406 KFLKELKNM----SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK  481 (704)
Q Consensus       406 ~lp~~l~~L----~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~  481 (704)
                      .+|..+..+    ++|++|+|++|......|..++++++|++|+|++|...+..|  ++.+++|++|++++|.+. .+|.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC
Confidence            455555544    499999999986555556789999999999999986544444  899999999999999865 3443


Q ss_pred             cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCC
Q 041391          482 ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCR  561 (704)
Q Consensus       482 ~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~  561 (704)
                          .++|++|      ++++|.+.+..+.   .+++|+.|++++|.+.+..+   ..+..+++|+.|+|++|.+...  
T Consensus        98 ----~~~L~~L------~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~--  159 (487)
T 3oja_A           98 ----GPSIETL------HAANNNISRVSCS---RGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTV--  159 (487)
T ss_dssp             ----CTTCCEE------ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCCEE--
T ss_pred             ----CCCcCEE------ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCCCc--
Confidence                3889999      5999998876653   56899999999999886544   4678899999999999986431  


Q ss_pred             CcccccccchhhHhhHhhhcCCCCCCccc-ccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCC
Q 041391          562 NQEGNNEHNKKQEDEAETQGKGGLDGTFG-QKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKY  639 (704)
Q Consensus       562 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f  639 (704)
                                             .|..+. .+ ++|+.|+|++|.+..+|.... + +|+.|+|++|.+..+|.. ...+
T Consensus       160 -----------------------~~~~l~~~l-~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~l  213 (487)
T 3oja_A          160 -----------------------NFAELAASS-DTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE-FQSA  213 (487)
T ss_dssp             -----------------------EGGGGGGGT-TTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCEECGG-GGGG
T ss_pred             -----------------------ChHHHhhhC-CcccEEecCCCcccccccccc-CCCCCEEECCCCCCCCCCHh-HcCC
Confidence                                   123333 34 589999999999988876553 5 999999999999988876 4568


Q ss_pred             CCcCEEecCCCcccccccccccCcCCCccEEeeecCCCC
Q 041391          640 STVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMI  678 (704)
Q Consensus       640 ~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L  678 (704)
                      ++|+.|+|+++..-.+  ......+++|+.|++.+|+-.
T Consensus       214 ~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          214 AGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBC
T ss_pred             CCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCc
Confidence            9999999998653321  111256789999999998653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=2.5e-16  Score=162.28  Aligned_cols=150  Identities=21%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcc-cc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LD  460 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~-i~  460 (704)
                      .++.++++++.++          .+|..+.  .+|++|+|++|. +..+| ..+.++++|++|+|++|. +..+|.. +.
T Consensus        17 ~~~~l~~~~~~l~----------~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~   82 (270)
T 2o6q_A           17 NKNSVDCSSKKLT----------AIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK   82 (270)
T ss_dssp             TTTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred             CCCEEEccCCCCC----------ccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence            4667777777665          2343332  467777777764 44444 356777777777777763 3445444 46


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHh
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESL  540 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L  540 (704)
                      .+++|++|++++|.+....+..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+....+   ..+
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~  153 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAEL------RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---GVF  153 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTT
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEE------ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH---hHc
Confidence            67777777777776544333445666666666      466666555544322255666666666665543221   224


Q ss_pred             ccCCCccEEEEEecC
Q 041391          541 EKFKNLLKLKIAWGA  555 (704)
Q Consensus       541 ~~l~~L~~L~Ls~n~  555 (704)
                      ..+++|+.|++++|.
T Consensus       154 ~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQ  168 (270)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCcccceeEecCCc
Confidence            455555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=5.4e-16  Score=177.96  Aligned_cols=236  Identities=21%  Similarity=0.072  Sum_probs=162.6

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+..    .+++|++|+|++|.++          .+|.   .+++|++|+|++| .+..+|.   .+
T Consensus        62 ~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l  120 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT----------SLPV---LPPGLLELSIFSN-PLTHLPA---LP  120 (622)
T ss_dssp             TCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS----------CCCC---CCTTCCEEEECSC-CCCCCCC---CC
T ss_pred             CCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC----------cCCC---CCCCCCEEECcCC-cCCCCCC---CC
Confidence            45555555555554432    5789999999999776          3344   6789999999997 5677777   57


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE  518 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~  518 (704)
                      .+|++|++++| .+..+|..   +++|++|++++|.+. .+|..   +.+|+.|      ++++|.+....   . .+++
T Consensus       121 ~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L------~L~~N~l~~l~---~-~~~~  182 (622)
T 3g06_A          121 SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKL------WAYNNQLTSLP---M-LPSG  182 (622)
T ss_dssp             TTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEE------ECCSSCCSCCC---C-CCTT
T ss_pred             CCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEE------ECCCCCCCCCc---c-cCCC
Confidence            88999999987 56667764   488999999999754 45653   4567777      47777766543   3 5678


Q ss_pred             CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391          519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK  598 (704)
Q Consensus       519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~  598 (704)
                      |+.|++++|.+.. ++.      .+++|+.|++++|.+.. .+...   ..+..+ .+..| ....+|    ..+++|+.
T Consensus       183 L~~L~Ls~N~l~~-l~~------~~~~L~~L~L~~N~l~~-l~~~~---~~L~~L-~Ls~N-~L~~lp----~~l~~L~~  245 (622)
T 3g06_A          183 LQELSVSDNQLAS-LPT------LPSELYKLWAYNNRLTS-LPALP---SGLKEL-IVSGN-RLTSLP----VLPSELKE  245 (622)
T ss_dssp             CCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSS-CCCCC---TTCCEE-ECCSS-CCSCCC----CCCTTCCE
T ss_pred             CcEEECCCCCCCC-CCC------ccchhhEEECcCCcccc-cCCCC---CCCCEE-EccCC-ccCcCC----CCCCcCcE
Confidence            8888888887754 221      23677778887777543 22111   111111 11111 223344    22368999


Q ss_pred             EEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccc
Q 041391          599 LDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL  653 (704)
Q Consensus       599 L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L  653 (704)
                      |+|++|.+..+|..+.  +|+.|+|++|.+..+|.. ...+++|+.|+|++++.-
T Consensus       246 L~Ls~N~L~~lp~~~~--~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          246 LMVSGNRLTSLPMLPS--GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             EECCSSCCSCCCCCCT--TCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCC
T ss_pred             EECCCCCCCcCCcccc--cCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCC
Confidence            9999999999988222  999999999999999865 456899999999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=4.4e-17  Score=171.52  Aligned_cols=205  Identities=16%  Similarity=0.078  Sum_probs=157.1

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhc--cCCcccceeeeeccCCCCCCc----hhhhccccCcEEeeecccCCC
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKEL--KNMSALRLLSLQGVYGIREIP----SSIANLSNLRVLDLRCCYYLT  453 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l--~~L~~Lr~L~Ls~n~~l~~lP----~~l~~L~~L~~LdLs~c~~l~  453 (704)
                      .+++|++|++++|.++.         ..|..+  ..+++|++|+|++|......|    ..+..+++|++|+|++|....
T Consensus        89 ~~~~L~~L~l~~n~l~~---------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  159 (310)
T 4glp_A           89 AYSRLKELTLEDLKITG---------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA  159 (310)
T ss_dssp             HHSCCCEEEEESCCCBS---------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred             ccCceeEEEeeCCEecc---------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence            34679999999998763         345556  899999999999986554444    345679999999999997766


Q ss_pred             cCCccccccCCCcEEEccCcccccc--cC--ccCCCCCCcceecccccccCCCCCCccchh---hHHhCCCCCcEEEEEe
Q 041391          454 KLPKGLDSLKKLTYLDISECYLIEY--MP--KELSSLSELQVLKGFLVTDAKPNDKICTLE---DLGNSLKELRKLSIYV  526 (704)
Q Consensus       454 ~lP~~i~~L~~L~~L~Ls~n~~~~~--lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~---~l~~~L~~L~~L~L~~  526 (704)
                      ..|..++.+++|++|++++|.+.+.  ++  ..++.+++|++|      ++++|.+.....   .+...+++|+.|++++
T Consensus       160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L------~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL------ALRNTGMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC------BCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE------ECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence            6677899999999999999986542  32  335789999999      699998864332   2333889999999999


Q ss_pred             eCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391          527 NNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL  606 (704)
Q Consensus       527 n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l  606 (704)
                      |.+.+..+.....+..+++|++|+|++|.+.                          .+|..++   ++|+.|+|++|.+
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------------------------~lp~~~~---~~L~~L~Ls~N~l  284 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------------------------QVPKGLP---AKLRVLDLSSNRL  284 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--------------------------SCCSCCC---SCCSCEECCSCCC
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCC--------------------------chhhhhc---CCCCEEECCCCcC
Confidence            9987654421122233379999999999864                          2455443   5999999999999


Q ss_pred             CCCcccCCCC-CeeEEEEEcCCCC
Q 041391          607 ESLPNWLSGL-NLRKLYIRGGQLR  629 (704)
Q Consensus       607 ~~lP~~l~~l-~L~~L~Ls~n~l~  629 (704)
                      ..+|. +..+ +|+.|+|++|++.
T Consensus       285 ~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          285 NRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             CCCch-hhhCCCccEEECcCCCCC
Confidence            98876 4555 9999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=2.7e-18  Score=186.52  Aligned_cols=264  Identities=16%  Similarity=0.112  Sum_probs=184.7

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC----CCchhh-------hccccCcEE
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR----EIPSSI-------ANLSNLRVL  444 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~----~lP~~l-------~~L~~L~~L  444 (704)
                      ..+..+++|++|+|++|.++..     ....++..+..+++|++|+|++|. +.    .+|..+       ..+++|++|
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~-----~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTE-----AARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHH-----HHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHhcCCCccEEECCCCCCCHH-----HHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEE
Confidence            3467788999999999977532     112356668899999999999973 33    445544       688999999


Q ss_pred             eeecccCCC----cCCccccccCCCcEEEccCcccccccC----ccCCCC---------CCcceecccccccCCCCCCc-
Q 041391          445 DLRCCYYLT----KLPKGLDSLKKLTYLDISECYLIEYMP----KELSSL---------SELQVLKGFLVTDAKPNDKI-  506 (704)
Q Consensus       445 dLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~~~~lP----~~i~~L---------~~L~~L~~~~~~~ls~n~l~-  506 (704)
                      +|++|....    .+|..+..+++|++|++++|.+....+    ..+..+         ++|++|      ++++|.+. 
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L------~L~~n~l~~  173 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI------ICGRNRLEN  173 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE------ECCSSCCTG
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE------ECCCCCCCc
Confidence            999986655    478888999999999999998753333    233334         889999      58888876 


Q ss_pred             cchh----hHHhCCCCCcEEEEEeeCCCCc-hhhHHH-HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhh
Q 041391          507 CTLE----DLGNSLKELRKLSIYVNNNAIP-IEKLSE-SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQ  580 (704)
Q Consensus       507 ~~~~----~l~~~L~~L~~L~L~~n~~~~~-~~~l~~-~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~  580 (704)
                      ..++    .+. .+++|+.|++++|.+... +..+.. .+..+++|+.|+|++|.+...                     
T Consensus       174 ~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---------------------  231 (386)
T 2ca6_A          174 GSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---------------------  231 (386)
T ss_dssp             GGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---------------------
T ss_pred             HHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---------------------
Confidence            3344    444 788999999999987521 122334 788899999999999884210                     


Q ss_pred             cCCCCCCcccccccceeEEEEEcCCCCC-----CcccCCC--C-CeeEEEEEcCCCCC-----cCCCccCCCCCcCEEec
Q 041391          581 GKGGLDGTFGQKDRLLEKLDLHCFPLES-----LPNWLSG--L-NLRKLYIRGGQLRS-----LQGDTHKKYSTVKVLRL  647 (704)
Q Consensus       581 ~~~~l~~~~~~lp~~L~~L~Ls~~~l~~-----lP~~l~~--l-~L~~L~Ls~n~l~~-----lp~~~~~~f~~L~~L~L  647 (704)
                      ....+|..+..+ ++|++|+|++|.+..     +|.++..  + +|++|+|++|.+..     +|......+++|+.|+|
T Consensus       232 g~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          232 GSSALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHHHHHHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence            001123344455 489999999998865     3566532  5 89999999999966     66655455799999999


Q ss_pred             CCCcccccc--cccccCcCCCccEEeeec
Q 041391          648 RYLNELNVN--WRELQALFPDLEYLEKFN  674 (704)
Q Consensus       648 ~~l~~L~l~--~~~l~~~~p~L~~L~i~~  674 (704)
                      ++++.-...  ...+...+|.++.+.+..
T Consensus       311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          311 NGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            887644322  122335567776666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=4.5e-16  Score=160.40  Aligned_cols=196  Identities=20%  Similarity=0.244  Sum_probs=115.0

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKG  494 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~  494 (704)
                      .+++++++++ .++.+|..+.  .+|++|+|++|......+..+.++++|++|++++|.+. .+|. .+..+++|++|  
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L--   90 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL--   90 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE--
T ss_pred             CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE--
Confidence            3566666664 4556665443  46677777766433322335666777777777776644 3333 34566677777  


Q ss_pred             cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH
Q 041391          495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE  574 (704)
Q Consensus       495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~  574 (704)
                          ++++|.+....+.....+++|+.|++++|.+....+   ..+..+++|++|+|++|.+..                
T Consensus        91 ----~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~----------------  147 (270)
T 2o6q_A           91 ----WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQS----------------  147 (270)
T ss_dssp             ----ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCC----------------
T ss_pred             ----ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCCc----------------
Confidence                466666665554433266677777777666654332   345666677777776666432                


Q ss_pred             hhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          575 DEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       575 ~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                                ++. .+..+ ++|+.|+|++|.+..+|.. +..+ +|++|+|++|.+..++...+..+++|+.|+|.+++
T Consensus       148 ----------~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          148 ----------LPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ----------CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------cCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence                      111 13333 3677777777666666543 4444 67777777777766666555556667777666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=2.9e-16  Score=165.19  Aligned_cols=191  Identities=22%  Similarity=0.269  Sum_probs=157.3

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      +..+++|++|++++| .+..+| .+..+++|++|+|++| .+..+|. +..+++|++|++++|.+. .+| .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCC
Confidence            346789999999998 577787 4999999999999998 5566666 999999999999999854 454 588999999


Q ss_pred             eecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccc
Q 041391          491 VLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHN  570 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  570 (704)
                      +|      ++++|.+... +.+. .+++|+.|++++|.+....+     +..+++|+.|++++|.+..            
T Consensus       111 ~L------~l~~n~l~~~-~~l~-~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~------------  165 (308)
T 1h6u_A          111 TL------DLTSTQITDV-TPLA-GLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSD------------  165 (308)
T ss_dssp             EE------ECTTSCCCCC-GGGT-TCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC------------
T ss_pred             EE------ECCCCCCCCc-hhhc-CCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCC------------
Confidence            99      6999987764 4577 99999999999998875322     7899999999999998542            


Q ss_pred             hhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391          571 KKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY  649 (704)
Q Consensus       571 ~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~  649 (704)
                                    ++. +..+ ++|+.|++++|.+..+|. +..+ +|++|+|++|.+..++.  ...+++|+.|+|++
T Consensus       166 --------------~~~-l~~l-~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          166 --------------LTP-LANL-SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (308)
T ss_dssp             --------------CGG-GTTC-TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             --------------Chh-hcCC-CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccC
Confidence                          222 4445 489999999999998876 5556 99999999999988874  56689999999987


Q ss_pred             Cc
Q 041391          650 LN  651 (704)
Q Consensus       650 l~  651 (704)
                      ++
T Consensus       227 N~  228 (308)
T 1h6u_A          227 QT  228 (308)
T ss_dssp             EE
T ss_pred             Ce
Confidence            65

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=3.4e-16  Score=163.15  Aligned_cols=199  Identities=20%  Similarity=0.152  Sum_probs=163.3

Q ss_pred             hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCc
Q 041391          410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL  489 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L  489 (704)
                      .+.++++|+.++++++ .++.+|..+.  .+|++|+|++|......|..+..+++|++|++++|.+. .+|. .+.+++|
T Consensus         5 ~~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTC
T ss_pred             cccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcC
Confidence            3678899999999996 6788987664  78999999999766556778999999999999999865 4454 3789999


Q ss_pred             ceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391          490 QVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH  569 (704)
Q Consensus       490 ~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  569 (704)
                      ++|      ++++|.+...+..+. .+++|+.|++++|++....+   ..|..+++|+.|+|++|.+..           
T Consensus        80 ~~L------~Ls~N~l~~l~~~~~-~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~~-----------  138 (290)
T 1p9a_G           80 GTL------DLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELKT-----------  138 (290)
T ss_dssp             CEE------ECCSSCCSSCCCCTT-TCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCCC-----------
T ss_pred             CEE------ECCCCcCCcCchhhc-cCCCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCCc-----------
Confidence            999      699999886666666 89999999999999875433   468899999999999998643           


Q ss_pred             chhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEe
Q 041391          570 NKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLR  646 (704)
Q Consensus       570 ~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~  646 (704)
                                     +|. .+..+ ++|+.|+|++|.+..+|..+ ..+ +|+.|+|++|.+..+|..... +++|+.|.
T Consensus       139 ---------------~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~  201 (290)
T 1p9a_G          139 ---------------LPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAF  201 (290)
T ss_dssp             ---------------CCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEE
T ss_pred             ---------------cChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEE
Confidence                           222 23444 59999999999999998765 446 999999999999999987665 57899999


Q ss_pred             cCCCc
Q 041391          647 LRYLN  651 (704)
Q Consensus       647 L~~l~  651 (704)
                      |.+++
T Consensus       202 L~~Np  206 (290)
T 1p9a_G          202 LHGNP  206 (290)
T ss_dssp             CCSCC
T ss_pred             eCCCC
Confidence            98755

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=1.2e-17  Score=181.38  Aligned_cols=244  Identities=19%  Similarity=0.150  Sum_probs=178.3

Q ss_pred             chhhHhccCCcccceeeeeccCCCCC----CchhhhccccCcEEeeeccc---CCCcCCccc-------cccCCCcEEEc
Q 041391          405 SKFLKELKNMSALRLLSLQGVYGIRE----IPSSIANLSNLRVLDLRCCY---YLTKLPKGL-------DSLKKLTYLDI  470 (704)
Q Consensus       405 ~~lp~~l~~L~~Lr~L~Ls~n~~l~~----lP~~l~~L~~L~~LdLs~c~---~l~~lP~~i-------~~L~~L~~L~L  470 (704)
                      ..++..+..+++|++|+|++|.....    ++..+..+++|++|+|++|.   ..+.+|..+       ..+++|++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            35677888999999999999854433    33446789999999999973   223556555       68899999999


Q ss_pred             cCccccc----ccCccCCCCCCcceecccccccCCCCCCccchh-----hHHhCC---------CCCcEEEEEeeCCC-C
Q 041391          471 SECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-----DLGNSL---------KELRKLSIYVNNNA-I  531 (704)
Q Consensus       471 s~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-----~l~~~L---------~~L~~L~L~~n~~~-~  531 (704)
                      ++|.+..    .+|..+..+++|++|      ++++|.+....+     .+. .+         ++|+.|++++|.+. .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L------~L~~n~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHL------YLHNNGLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEE------ECCSSCCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEE------ECcCCCCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            9999776    477778899999999      699998764322     222 44         89999999999987 4


Q ss_pred             chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC-----
Q 041391          532 PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL-----  606 (704)
Q Consensus       532 ~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l-----  606 (704)
                      .++.+...+..+++|++|++++|.+...         ...   .        .++..+..+ ++|+.|+|++|.+     
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~---~--------l~~~~l~~~-~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIE---H--------LLLEGLAYC-QELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHH---------HHH---H--------HHHTTGGGC-TTCCEEECCSSCCHHHHH
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHh---------HHH---H--------HHHHHhhcC-CCccEEECcCCCCCcHHH
Confidence            5566667889999999999999985310         000   0        012234455 4999999999998     


Q ss_pred             CCCcccCCCC-CeeEEEEEcCCCCCc-----CCCc-cCCCCCcCEEecCCCccccccccccc----CcCCCccEEeeecC
Q 041391          607 ESLPNWLSGL-NLRKLYIRGGQLRSL-----QGDT-HKKYSTVKVLRLRYLNELNVNWRELQ----ALFPDLEYLEKFNC  675 (704)
Q Consensus       607 ~~lP~~l~~l-~L~~L~Ls~n~l~~l-----p~~~-~~~f~~L~~L~L~~l~~L~l~~~~l~----~~~p~L~~L~i~~C  675 (704)
                      ..+|.++..+ +|++|+|++|.+...     +... ...+++|+.|+|+++..-......+.    ..+|+|+.|++.+|
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            5678878777 999999999998654     2221 12378999999999764321011122    34799999999998


Q ss_pred             C
Q 041391          676 P  676 (704)
Q Consensus       676 ~  676 (704)
                      +
T Consensus       314 ~  314 (386)
T 2ca6_A          314 R  314 (386)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.65  E-value=2.2e-16  Score=159.56  Aligned_cols=52  Identities=17%  Similarity=0.168  Sum_probs=23.1

Q ss_pred             ceeEEEEEcCC-CCCCcc-cCCCC--CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391          595 LLEKLDLHCFP-LESLPN-WLSGL--NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY  649 (704)
Q Consensus       595 ~L~~L~Ls~~~-l~~lP~-~l~~l--~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~  649 (704)
                      +|+.|+|++|. +..+|. .+..+  +|+.|+|++|++..+|..   .|++|+.|.+.+
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            45555555542 444432 22222  455555555555444433   244444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=2.1e-17  Score=175.50  Aligned_cols=249  Identities=15%  Similarity=0.057  Sum_probs=143.8

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCC--cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCc-CCcccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNM--SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK-LPKGLD  460 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L--~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~-lP~~i~  460 (704)
                      ++.|+++++.+.            +..+..+  +++++|++++|. +...+..+..+++|++|++++|..... +|..+.
T Consensus        49 ~~~l~l~~~~~~------------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~  115 (336)
T 2ast_B           49 WQTLDLTGKNLH------------PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS  115 (336)
T ss_dssp             SSEEECTTCBCC------------HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             heeeccccccCC------------HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence            566777766443            2334444  667777777764 333333366677777777777754433 666677


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCC-CCcc-chhhHHhCCCCCcEEEEEee-CCCCchhhHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN-DKIC-TLEDLGNSLKELRKLSIYVN-NNAIPIEKLS  537 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n-~l~~-~~~~l~~~L~~L~~L~L~~n-~~~~~~~~l~  537 (704)
                      .+++|++|++++|.+....|..++.+++|++|      ++++| .+.. .++.+...+++|+.|++++| .+..  ..++
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L------~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~  187 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL------NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQ  187 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE------ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHH
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE------ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHH
Confidence            77777777777777665666667777777777      46666 4443 23442226777777777777 5542  2234


Q ss_pred             HHhccCC-CccEEEEEecC--CCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC-CC-CCccc
Q 041391          538 ESLEKFK-NLLKLKIAWGA--GYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP-LE-SLPNW  612 (704)
Q Consensus       538 ~~L~~l~-~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~-l~-~lP~~  612 (704)
                      ..+..++ +|++|++++|.  +..                        ..++..+..+ ++|+.|+|++|. +. ..+..
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~------------------------~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQK------------------------SDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCH------------------------HHHHHHHHHC-TTCSEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCH------------------------HHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHH
Confidence            5566777 77777777763  110                        0012222334 377788887776 33 34455


Q ss_pred             CCCC-CeeEEEEEcCC-CCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          613 LSGL-NLRKLYIRGGQ-LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       613 l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      +..+ +|++|+|++|. +..........+++|+.|+|.+|  +  ....+......|+.|++. |+.++.+..
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i--~~~~~~~l~~~l~~L~l~-~n~l~~~~~  310 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--V--PDGTLQLLKEALPHLQIN-CSHFTTIAR  310 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--S--CTTCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--c--CHHHHHHHHhhCcceEEe-cccCccccC
Confidence            5555 88888888875 21111112345788888888877  2  222222111234444564 556665443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=8.2e-16  Score=155.32  Aligned_cols=195  Identities=16%  Similarity=0.141  Sum_probs=123.1

Q ss_pred             cCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCC-CCCccchhh-HHhC
Q 041391          440 NLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKP-NDKICTLED-LGNS  515 (704)
Q Consensus       440 ~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~-n~l~~~~~~-l~~~  515 (704)
                      +|++|++++|.. ..+|. .+..+++|++|++++|.....+| ..+..+++|++|      ++++ |.+....+. +. .
T Consensus        32 ~l~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L------~l~~~n~l~~i~~~~f~-~  103 (239)
T 2xwt_C           32 STQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI------EIRNTRNLTYIDPDALK-E  103 (239)
T ss_dssp             TCCEEEEESCCC-SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE------EEEEETTCCEECTTSEE-C
T ss_pred             cccEEEEeCCcc-eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE------ECCCCCCeeEcCHHHhC-C
Confidence            455555555432 22322 45555555555555554122222 234555555555      3444 444443332 33 6


Q ss_pred             CCCCcEEEEEeeCCCCchhhHHHHhccCCCcc---EEEEEec-CCCCCCCCcccccccchhhHhhHhhhcCCCCC-Cccc
Q 041391          516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLL---KLKIAWG-AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFG  590 (704)
Q Consensus       516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~  590 (704)
                      +++|+.|++++|.+.. ++.    +..+++|+   .|++++| .+..                          ++ ..+.
T Consensus       104 l~~L~~L~l~~n~l~~-lp~----~~~l~~L~~L~~L~l~~N~~l~~--------------------------i~~~~~~  152 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKM-FPD----LTKVYSTDIFFILEITDNPYMTS--------------------------IPVNAFQ  152 (239)
T ss_dssp             CTTCCEEEEEEECCCS-CCC----CTTCCBCCSEEEEEEESCTTCCE--------------------------ECTTTTT
T ss_pred             CCCCCEEeCCCCCCcc-ccc----cccccccccccEEECCCCcchhh--------------------------cCccccc
Confidence            6777788888877654 332    55666666   8888888 5421                          22 2244


Q ss_pred             cccccee-EEEEEcCCCCCCcccCCCC-CeeEEEEEcCC-CCCcCCCccCCC-CCcCEEecCCCcccccccccccCcCCC
Q 041391          591 QKDRLLE-KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQ-LRSLQGDTHKKY-STVKVLRLRYLNELNVNWRELQALFPD  666 (704)
Q Consensus       591 ~lp~~L~-~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f-~~L~~L~L~~l~~L~l~~~~l~~~~p~  666 (704)
                      .+ ++|+ .|++++|.+..+|...... +|+.|+|++|+ ++.++...+..+ ++|+.|+|+++..-.+.    ...|++
T Consensus       153 ~l-~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~----~~~~~~  227 (239)
T 2xwt_C          153 GL-CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP----SKGLEH  227 (239)
T ss_dssp             TT-BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC----CTTCTT
T ss_pred             ch-hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC----hhHhcc
Confidence            45 4899 9999999999888776665 99999999995 999988877778 99999999885432211    136899


Q ss_pred             ccEEeeecCCCC
Q 041391          667 LEYLEKFNCPMI  678 (704)
Q Consensus       667 L~~L~i~~C~~L  678 (704)
                      |+.|.+.+|..|
T Consensus       228 L~~L~l~~~~~l  239 (239)
T 2xwt_C          228 LKELIARNTWTL  239 (239)
T ss_dssp             CSEEECTTC---
T ss_pred             CceeeccCccCC
Confidence            999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=2.4e-15  Score=155.17  Aligned_cols=179  Identities=21%  Similarity=0.278  Sum_probs=140.8

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIAN  437 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~  437 (704)
                      .++.+......+..+  ..+..+++|++|++++|.++.          + ..+..+++|++|+|++|. +..+| ..+++
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~----------~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~  107 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD----------I-SALKELTNLTYLILTGNQ-LQSLPNGVFDK  107 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC----------C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC----------c-hhhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence            455555555544433  237889999999999998763          2 368899999999999985 44554 45799


Q ss_pred             cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391          438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK  517 (704)
Q Consensus       438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~  517 (704)
                      +++|++|+|++|...+..|..++.+++|++|++++|.+.+..|..++.+++|++|      ++++|.+.+..+.....++
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL------DLSYNQLQSLPEGVFDKLT  181 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE------ECCCCCcCccCHHHhcCCc
Confidence            9999999999986555445558999999999999998775555557899999999      6999998877766533899


Q ss_pred             CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC
Q 041391          518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC  560 (704)
Q Consensus       518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~  560 (704)
                      +|+.|++++|.+.+..+   ..+..+++|+.|++++|.+...+
T Consensus       182 ~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             TCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cCCEEECCCCcCCccCH---HHHhCCcCCCEEEccCCCccccC
Confidence            99999999999876544   45788999999999999865443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=1.7e-16  Score=170.83  Aligned_cols=251  Identities=16%  Similarity=0.126  Sum_probs=174.7

Q ss_pred             CCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhcc-----ccC
Q 041391          368 EQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANL-----SNL  441 (704)
Q Consensus       368 ~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L-----~~L  441 (704)
                      +.+....+.++...++|++|+|++|.++...     ...+...+..++ +|++|+|++|......+..+..+     ++|
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS-----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGSC-----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChHH-----HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3444455666777778999999999876432     123447788888 99999999996555556667775     999


Q ss_pred             cEEeeecccCCCcCCccccc----c-CCCcEEEccCcccccccCcc----CCC-CCCcceecccccccCCCCCCccc---
Q 041391          442 RVLDLRCCYYLTKLPKGLDS----L-KKLTYLDISECYLIEYMPKE----LSS-LSELQVLKGFLVTDAKPNDKICT---  508 (704)
Q Consensus       442 ~~LdLs~c~~l~~lP~~i~~----L-~~L~~L~Ls~n~~~~~lP~~----i~~-L~~L~~L~~~~~~~ls~n~l~~~---  508 (704)
                      ++|+|++|......+..+..    + ++|++|++++|.+....+..    +.. .++|++|      ++++|.+...   
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L------~Ls~N~l~~~~~~  156 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL------NLRGNDLGIKSSD  156 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE------ECTTSCGGGSCHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE------EccCCcCCHHHHH
Confidence            99999999655555554444    4 89999999999976544433    334 3689999      6999988742   


Q ss_pred             -h-hhHHhCCC-CCcEEEEEeeCCCCch-hhHHHHhccC-CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391          509 -L-EDLGNSLK-ELRKLSIYVNNNAIPI-EKLSESLEKF-KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG  583 (704)
Q Consensus       509 -~-~~l~~~L~-~L~~L~L~~n~~~~~~-~~l~~~L~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (704)
                       + ..+. .++ +|+.|++++|.+.... ..+...+..+ ++|+.|+|++|.+.....                     .
T Consensus       157 ~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---------------------~  214 (362)
T 3goz_A          157 ELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---------------------A  214 (362)
T ss_dssp             HHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------------H
T ss_pred             HHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------------H
Confidence             2 3344 555 9999999999886443 3444567777 599999999998532100                     0


Q ss_pred             CCCCcccccccceeEEEEEcCCCCCCcc-----cCCCC-CeeEEEEEcCCCCCcCCC-------ccCCCCCcCEEecCCC
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLESLPN-----WLSGL-NLRKLYIRGGQLRSLQGD-------THKKYSTVKVLRLRYL  650 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-----~l~~l-~L~~L~Ls~n~l~~lp~~-------~~~~f~~L~~L~L~~l  650 (704)
                      .++..+...+++|++|+|++|.+...+.     .+..+ +|+.|+|++|.+..+...       ....+++|+.|+|+++
T Consensus       215 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            1223333434589999999999877542     34445 999999999986444422       2335677888888776


Q ss_pred             c
Q 041391          651 N  651 (704)
Q Consensus       651 ~  651 (704)
                      +
T Consensus       295 ~  295 (362)
T 3goz_A          295 E  295 (362)
T ss_dssp             B
T ss_pred             c
Confidence            5

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.62  E-value=8.2e-16  Score=191.25  Aligned_cols=145  Identities=11%  Similarity=0.124  Sum_probs=117.0

Q ss_pred             hhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhH-----
Q 041391          148 HIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEF-----  222 (704)
Q Consensus       148 ~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~-----  222 (704)
                      +.++|+||+..|+..    .+++.+++++|+++|+|+|||               |..+|+.|+.++  ..|++.     
T Consensus       288 ~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLa---------------l~~~~~~l~~~~--~~~~~~l~~l~  346 (1249)
T 3sfz_A          288 REKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLV---------------VSLIGALLRDFP--NRWAYYLRQLQ  346 (1249)
T ss_dssp             HHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHH---------------HHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHH---------------HHHHHHHhhcCh--hHHHHHHHHHh
Confidence            456799999999644    346677899999999999999               666666665442  234322     


Q ss_pred             ---------------HHHHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhccccccc
Q 041391          223 ---------------MEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDD  287 (704)
Q Consensus       223 ---------------~~i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~  287 (704)
                                     ..+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++                   
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------------  407 (1249)
T 3sfz_A          347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------------  407 (1249)
T ss_dssp             SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------------
T ss_pred             hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------------
Confidence                           2388899999999999999999999999999999999999999544                   


Q ss_pred             CHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhcCCC
Q 041391          288 TQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPE  338 (704)
Q Consensus       288 ~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~~~e  338 (704)
                        ++.++.++++|+++|||+....+    ...+|+|||++|++++..+.++
T Consensus       408 --~~~~~~~l~~L~~~sl~~~~~~~----~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 --TEEVEDILQEFVNKSLLFCNRNG----KSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             --HHHHHHHHHHHHHTTSCEEEESS----SSEEEECCHHHHHHHHHHTGGG
T ss_pred             --HHHHHHHHHHHHhccceEEecCC----CceEEEecHHHHHHHHhhhhHH
Confidence              34578899999999999976532    3347999999999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=5.3e-17  Score=174.81  Aligned_cols=254  Identities=18%  Similarity=0.110  Sum_probs=178.4

Q ss_pred             EEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-----hhhhccc-cCcEEeeecccCCCcCCccc
Q 041391          386 VLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-----SSIANLS-NLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       386 ~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-----~~l~~L~-~L~~LdLs~c~~l~~lP~~i  459 (704)
                      +++++.|.+++         .+|..+....+|++|+|++|. ++..+     ..+.+++ +|++|+|++|......+..+
T Consensus         2 ~~~ls~n~~~~---------~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l   71 (362)
T 3goz_A            2 NYKLTLHPGSN---------PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL   71 (362)
T ss_dssp             EEECCCCTTCC---------HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ccccccccchH---------HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence            45777886653         456666677779999999985 55554     5678888 99999999996666656677


Q ss_pred             ccc-----CCCcEEEccCcccccccCcc----CCCC-CCcceecccccccCCCCCCccchh-hHH---hC-CCCCcEEEE
Q 041391          460 DSL-----KKLTYLDISECYLIEYMPKE----LSSL-SELQVLKGFLVTDAKPNDKICTLE-DLG---NS-LKELRKLSI  524 (704)
Q Consensus       460 ~~L-----~~L~~L~Ls~n~~~~~lP~~----i~~L-~~L~~L~~~~~~~ls~n~l~~~~~-~l~---~~-L~~L~~L~L  524 (704)
                      ..+     ++|++|++++|.+....+..    +..+ ++|++|      ++++|.+..... .+.   .. .++|+.|++
T Consensus        72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L------~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  145 (362)
T 3goz_A           72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL------DLGWNDFSSKSSSEFKQAFSNLPASITSLNL  145 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE------ECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred             HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEE------ECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence            775     99999999999977655553    3344 899999      699999876643 222   13 369999999


Q ss_pred             EeeCCCCc-hhhHHHHhccCC-CccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEE
Q 041391          525 YVNNNAIP-IEKLSESLEKFK-NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLH  602 (704)
Q Consensus       525 ~~n~~~~~-~~~l~~~L~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls  602 (704)
                      ++|.+... ...++..+..++ +|++|+|++|.+....+..                     +...+...|++|++|+|+
T Consensus       146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~---------------------l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE---------------------LAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH---------------------HHHHHHTSCTTCCEEECT
T ss_pred             cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH---------------------HHHHHHhCCCCCCEEECC
Confidence            99987643 245566777776 9999999999853211000                     001222333589999999


Q ss_pred             cCCCCC-----CcccCCCC--CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCcccccccc---ccc---CcCC
Q 041391          603 CFPLES-----LPNWLSGL--NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWR---ELQ---ALFP  665 (704)
Q Consensus       603 ~~~l~~-----lP~~l~~l--~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~---~l~---~~~p  665 (704)
                      +|.+..     ++..+...  +|++|+|++|.+...+.    .....+++|+.|+|+++..-.+...   .+.   ..++
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence            999876     56655543  89999999999976654    2345678999999988762111111   111   3556


Q ss_pred             CccEEeeecCC
Q 041391          666 DLEYLEKFNCP  676 (704)
Q Consensus       666 ~L~~L~i~~C~  676 (704)
                      +|+.|++.+++
T Consensus       285 ~L~~LdL~~N~  295 (362)
T 3goz_A          285 KIILVDKNGKE  295 (362)
T ss_dssp             EEEEECTTSCB
T ss_pred             ceEEEecCCCc
Confidence            77888888774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=3.6e-15  Score=159.67  Aligned_cols=237  Identities=19%  Similarity=0.110  Sum_probs=161.4

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSL  462 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L  462 (704)
                      ++++.+++.++          ++|..+  .+++++|+|++| .++.+|. .|.+|++|++|+|++|...+.+|. .|.++
T Consensus        12 ~~v~C~~~~Lt----------~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L   78 (350)
T 4ay9_X           12 RVFLCQESKVT----------EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   78 (350)
T ss_dssp             TEEEEESTTCC----------SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred             CEEEecCCCCC----------ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence            56777777665          456555  367899999997 5777875 578899999999999877777765 46788


Q ss_pred             CCCcE-EEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          463 KKLTY-LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       463 ~~L~~-L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                      ++|+. +.+.+|.+....|..+..+++|++|      ++++|.+....+.......++..|++.++.....++.  ..+.
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L------~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~  150 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYL------LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFV  150 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEE------EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--TSST
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccc------cccccccccCCchhhcccchhhhhhhccccccccccc--cchh
Confidence            88776 4555566554446668889999998      5777777665543222556677777766433222221  2344


Q ss_pred             cC-CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEE-cCCCCCCccc-CCCC-C
Q 041391          542 KF-KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLH-CFPLESLPNW-LSGL-N  617 (704)
Q Consensus       542 ~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls-~~~l~~lP~~-l~~l-~  617 (704)
                      .+ ..++.|++++|.+..                          ++...... .+|++|.+. +|.++.+|.. +..+ +
T Consensus       151 ~~~~~l~~L~L~~N~i~~--------------------------i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          151 GLSFESVILWLNKNGIQE--------------------------IHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             TSBSSCEEEECCSSCCCE--------------------------ECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             hcchhhhhhccccccccC--------------------------CChhhccc-cchhHHhhccCCcccCCCHHHhccCcc
Confidence            44 368888888887532                          33333344 379999997 5778899865 4555 9


Q ss_pred             eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391          618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN  674 (704)
Q Consensus       618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~  674 (704)
                      |++|+|++|+++.+|...   |.+|+.|.+.++..+. ....+ ..+++|+.+++.+
T Consensus       204 L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~-~lP~l-~~l~~L~~l~l~~  255 (350)
T 4ay9_X          204 PVILDISRTRIHSLPSYG---LENLKKLRARSTYNLK-KLPTL-EKLVALMEASLTY  255 (350)
T ss_dssp             CSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCC-CCCCT-TTCCSCCEEECSC
T ss_pred             cchhhcCCCCcCccChhh---hccchHhhhccCCCcC-cCCCc-hhCcChhhCcCCC
Confidence            999999999999998754   5566666666665554 11122 4688888888854

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=2.1e-17  Score=183.41  Aligned_cols=285  Identities=17%  Similarity=0.056  Sum_probs=167.1

Q ss_pred             eeeeecccCCCCC----cchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHh-ccCCcccceeeeeccCCCC----C
Q 041391          360 VSALVNVSEQFPD----FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKE-LKNMSALRLLSLQGVYGIR----E  430 (704)
Q Consensus       360 lr~l~~~~~~~~~----~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~-l~~L~~Lr~L~Ls~n~~l~----~  430 (704)
                      ++.+....+.+..    ..+..|..+++|++|++++|.++...     ...+... ....++|++|+|++|....    .
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-----HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH-----HHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence            4444444444442    22566788888888888888664211     1122222 2235678888888874332    2


Q ss_pred             CchhhhccccCcEEeeecccCCCcCCcccc-----ccCCCcEEEccCcccccc----cCccCCCCCCcceecccccccCC
Q 041391          431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLD-----SLKKLTYLDISECYLIEY----MPKELSSLSELQVLKGFLVTDAK  501 (704)
Q Consensus       431 lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~-----~L~~L~~L~Ls~n~~~~~----lP~~i~~L~~L~~L~~~~~~~ls  501 (704)
                      ++..+..+++|++|++++|......+..+.     .+++|++|++++|.+...    ++..+..+++|++|      +++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L------~Ls  235 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL------ALG  235 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE------ECC
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE------ecc
Confidence            355567778888888888754332222332     255888888888876542    45666677888888      577


Q ss_pred             CCCCccch-----hhHHhCCCCCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391          502 PNDKICTL-----EDLGNSLKELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED  575 (704)
Q Consensus       502 ~n~l~~~~-----~~l~~~L~~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~  575 (704)
                      +|.+....     +.+...+++|+.|++++|.+... ...++..+..+++|++|++++|.+....            ...
T Consensus       236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~------------~~~  303 (461)
T 1z7x_W          236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG------------ARL  303 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH------------HHH
T ss_pred             CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH------------HHH
Confidence            77765431     22322477888888888876532 1235566777888888888887742100            000


Q ss_pred             hHhhhcCCCCCCcccccccceeEEEEEcCCCCC-----CcccCCCC-CeeEEEEEcCCCCCcCC-----CccCCCCCcCE
Q 041391          576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLES-----LPNWLSGL-NLRKLYIRGGQLRSLQG-----DTHKKYSTVKV  644 (704)
Q Consensus       576 ~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~-----lP~~l~~l-~L~~L~Ls~n~l~~lp~-----~~~~~f~~L~~  644 (704)
                               +...+...+++|++|+|++|.+..     +|.++... +|++|+|++|.+.....     ......++|+.
T Consensus       304 ---------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  374 (461)
T 1z7x_W          304 ---------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV  374 (461)
T ss_dssp             ---------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ---------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence                     001111122478888888877653     34455444 88888888887643211     11122567888


Q ss_pred             EecCCCccccccccccc---CcCCCccEEeeecCC
Q 041391          645 LRLRYLNELNVNWRELQ---ALFPDLEYLEKFNCP  676 (704)
Q Consensus       645 L~L~~l~~L~l~~~~l~---~~~p~L~~L~i~~C~  676 (704)
                      |+|++|..-+.....+.   ..+++|++|++.+|+
T Consensus       375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            88877643211111111   346788888888773

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=4.7e-15  Score=152.91  Aligned_cols=132  Identities=19%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ..+++|+.|++++|.++.           ...+..+++|++|+|++|. +..++ .++++++|++|++++|...+..|..
T Consensus        38 ~~l~~L~~L~l~~~~i~~-----------~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~  104 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-----------VQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGV  104 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccceeeeeeCCCCccc-----------ccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhH
Confidence            345556666666665432           1235556666666666653 34443 3566666666666665333333333


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~  529 (704)
                      +..+++|++|++++|.+.+..|..++.+++|++|      ++++|.+....+.....+++|+.|++++|.+
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL------NLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE------ECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence            4556666666666665443333334555555555      3555544443332211444444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=2.1e-15  Score=161.51  Aligned_cols=218  Identities=19%  Similarity=0.144  Sum_probs=152.4

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcC-Ccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKL-PKG  458 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~l-P~~  458 (704)
                      ++++.|+|++|.++          .+| ..|.++++|++|+|++|...+.+|. .|.++++|+.+.+.+++.+..+ |..
T Consensus        30 ~~l~~L~Ls~N~i~----------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           30 RNAIELRFVLTKLR----------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             TTCSEEEEESCCCS----------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CCCCEEEccCCcCC----------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            68999999999876          345 4689999999999999976676764 5788988876544443455555 566


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCC-CCCccchh-hHHhCC-CCCcEEEEEeeCCCCchhh
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKP-NDKICTLE-DLGNSL-KELRKLSIYVNNNAIPIEK  535 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~-n~l~~~~~-~l~~~L-~~L~~L~L~~n~~~~~~~~  535 (704)
                      +..+++|++|++++|.+....+..+....++..|.      +.+ +.+....+ .+. .+ ..++.|++++|.+.. ++ 
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~------l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~i~~-i~-  170 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD------IQDNINIHTIERNSFV-GLSFESVILWLNKNGIQE-IH-  170 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE------EESCTTCCEECTTSST-TSBSSCEEEECCSSCCCE-EC-
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhh------hccccccccccccchh-hcchhhhhhccccccccC-CC-
Confidence            89999999999999986544444455566676773      433 34443333 233 44 468899999998763 22 


Q ss_pred             HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcccCC
Q 041391          536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNWLS  614 (704)
Q Consensus       536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~l~  614 (704)
                        .......+|+.|.+.+++..                         +.+|. .+..+ ++|+.|+|++|.+..+|.+..
T Consensus       171 --~~~f~~~~L~~l~l~~~n~l-------------------------~~i~~~~f~~l-~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          171 --NSAFNGTQLDELNLSDNNNL-------------------------EELPNDVFHGA-SGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             --TTSSTTEEEEEEECTTCTTC-------------------------CCCCTTTTTTE-ECCSEEECTTSCCCCCCSSSC
T ss_pred             --hhhccccchhHHhhccCCcc-------------------------cCCCHHHhccC-cccchhhcCCCCcCccChhhh
Confidence              33345568899988765422                         23443 34455 599999999999999997542


Q ss_pred             CCCeeEEEEEcC-CCCCcCCCccCCCCCcCEEecCC
Q 041391          615 GLNLRKLYIRGG-QLRSLQGDTHKKYSTVKVLRLRY  649 (704)
Q Consensus       615 ~l~L~~L~Ls~n-~l~~lp~~~~~~f~~L~~L~L~~  649 (704)
                      . +|+.|.+.++ .++.+|.  ...|++|+.+.+.+
T Consensus       223 ~-~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          223 E-NLKKLRARSTYNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             T-TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred             c-cchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence            2 7777776655 4577774  45688999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.2e-16  Score=169.78  Aligned_cols=208  Identities=19%  Similarity=0.139  Sum_probs=126.5

Q ss_pred             hcCCC--CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-CchhhhccccCcEEeeecccCCC
Q 041391          377 WFSNL--KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-IPSSIANLSNLRVLDLRCCYYLT  453 (704)
Q Consensus       377 ~f~~l--~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-lP~~l~~L~~L~~LdLs~c~~l~  453 (704)
                      .+..+  +++++|++++|.+..          .+..+..+++|++|+|++|..... +|..+..+++|++|+|++|....
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l~~----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~  132 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFMDQ----------PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD  132 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEECS----------CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred             HHHhhhhccceEEEcCCccccc----------cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence            34444  677777777775542          223355677777788777753323 66667777778888887776555


Q ss_pred             cCCccccccCCCcEEEccCc-cccc-ccCccCCCCCCcceecccccccCCCC-CCccc-hhhHHhCCC-CCcEEEEEeeC
Q 041391          454 KLPKGLDSLKKLTYLDISEC-YLIE-YMPKELSSLSELQVLKGFLVTDAKPN-DKICT-LEDLGNSLK-ELRKLSIYVNN  528 (704)
Q Consensus       454 ~lP~~i~~L~~L~~L~Ls~n-~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n-~l~~~-~~~l~~~L~-~L~~L~L~~n~  528 (704)
                      ..|..++.+++|++|++++| .+.. .+|..+..+++|++|      ++++| .+... ++.+...++ +|+.|++++|.
T Consensus       133 ~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L------~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          133 PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE------ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE------cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            66667777777888887777 3332 255556677777777      47776 55542 333222677 78888887774


Q ss_pred             CCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCC
Q 041391          529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLES  608 (704)
Q Consensus       529 ~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~  608 (704)
                      .......++..+..+++|+.|++++|...+.                        ..+..+..+ ++|++|+|++|. ..
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------------~~~~~l~~l-~~L~~L~l~~~~-~~  260 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------------------------DCFQEFFQL-NYLQHLSLSRCY-DI  260 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------------------------GGGGGGGGC-TTCCEEECTTCT-TC
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------------------------HHHHHHhCC-CCCCEeeCCCCC-CC
Confidence            2111234445666777888888877762110                        011233344 477888887774 22


Q ss_pred             Ccc---cCCCC-CeeEEEEEcC
Q 041391          609 LPN---WLSGL-NLRKLYIRGG  626 (704)
Q Consensus       609 lP~---~l~~l-~L~~L~Ls~n  626 (704)
                      .+.   .+..+ +|+.|+|++|
T Consensus       261 ~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          261 IPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTS
T ss_pred             CHHHHHHHhcCCCCCEEeccCc
Confidence            222   23444 7888888777

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.58  E-value=5.3e-17  Score=180.17  Aligned_cols=85  Identities=19%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             cceeEEEEEcCCCCC-----CcccCCCC--CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCccccccccccc-
Q 041391          594 RLLEKLDLHCFPLES-----LPNWLSGL--NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWRELQ-  661 (704)
Q Consensus       594 ~~L~~L~Ls~~~l~~-----lP~~l~~l--~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~~l~-  661 (704)
                      ++|++|+|++|.+..     ++..+...  +|++|+|++|.+.....    .....+++|+.|+|+++..-+.....+. 
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  363 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  363 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence            367777777766532     22222221  67777777777643211    1122357788888877642221111111 


Q ss_pred             ---CcCCCccEEeeecCCCCC
Q 041391          662 ---ALFPDLEYLEKFNCPMIS  679 (704)
Q Consensus       662 ---~~~p~L~~L~i~~C~~L~  679 (704)
                         ...++|+.|++.+| .++
T Consensus       364 ~l~~~~~~L~~L~L~~n-~i~  383 (461)
T 1z7x_W          364 GLGQPGSVLRVLWLADC-DVS  383 (461)
T ss_dssp             HHTSTTCCCCEEECTTS-CCC
T ss_pred             HHcCCCCceEEEECCCC-CCC
Confidence               22678999999888 454

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=1e-14  Score=148.41  Aligned_cols=108  Identities=19%  Similarity=0.136  Sum_probs=49.6

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF  495 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~  495 (704)
                      +|++|+|++|......|..+.++++|++|+|++|...+..|..+..+++|++|++++|.+....+..++.+++|++|   
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L---  112 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL---  112 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE---
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE---
Confidence            45555555553333333345555555555555553333333334555555555555555443333334455555555   


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~  529 (704)
                         ++++|.+....+.....+++|+.|++++|.+
T Consensus       113 ---~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          113 ---YLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ---EcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence               3444444433333211444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=1.1e-14  Score=148.23  Aligned_cols=176  Identities=22%  Similarity=0.265  Sum_probs=131.2

Q ss_pred             cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391          415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG  494 (704)
Q Consensus       415 ~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~  494 (704)
                      ...++++++++ .+..+|..+.  .+|+.|+|++|...+..|..+.++++|++|++++|.+.+..|..+..+++|++|  
T Consensus        14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--   88 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL--   88 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--
T ss_pred             CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE--
Confidence            45788899886 6778887665  689999999986666666678999999999999998877666668889999999  


Q ss_pred             cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH
Q 041391          495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE  574 (704)
Q Consensus       495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~  574 (704)
                          ++++|.+....+.....+++|+.|++++|.+....+   ..+..+++|+.|+|++|.+..                
T Consensus        89 ----~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~----------------  145 (251)
T 3m19_A           89 ----GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---GVFDRLTKLKELRLNTNQLQS----------------  145 (251)
T ss_dssp             ----ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCC----------------
T ss_pred             ----ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh---hHhccCCcccEEECcCCcCCc----------------
Confidence                588888887765543388888888888888764333   346777888888888877532                


Q ss_pred             hhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcc-cCCCC-CeeEEEEEcCCCC
Q 041391          575 DEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPN-WLSGL-NLRKLYIRGGQLR  629 (704)
Q Consensus       575 ~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l-~L~~L~Ls~n~l~  629 (704)
                                ++. .+..+ ++|+.|+|++|.+..+|. .+..+ +|+.|+|++|++.
T Consensus       146 ----------~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          146 ----------IPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ----------CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ----------cCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence                      222 34444 378888888887777765 44555 7888888888763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=7.6e-15  Score=143.72  Aligned_cols=154  Identities=19%  Similarity=0.229  Sum_probs=129.0

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ..+++|+.|++++|.++          .+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..
T Consensus        41 ~~l~~L~~L~l~~n~i~----------~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT----------DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCS----------CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             hhcCCccEEeccCCCcc----------ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChh
Confidence            56778999999999775          345 5888999999999998 566665 5999999999999999776667889


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      +..+++|++|++++|.+....|..++.+++|++|      ++++|.....++.+. .+++|+.|++++|.+... +    
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L------~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~~-~----  175 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI------DLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDY-R----  175 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE------ECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCCC-T----
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE------EccCCCCccccHhhc-CCCCCCEEECCCCCCcCh-H----
Confidence            9999999999999999887788889999999999      599998455566787 999999999999988642 2    


Q ss_pred             HhccCCCccEEEEEecCCC
Q 041391          539 SLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l~  557 (704)
                      .+..+++|+.|++++|.+.
T Consensus       176 ~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TGGGCSSCCEEEECBC---
T ss_pred             HhccCCCCCEEEeeCcccC
Confidence            5788999999999999853

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.55  E-value=1.3e-14  Score=151.21  Aligned_cols=147  Identities=22%  Similarity=0.248  Sum_probs=69.3

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ..+++|+.|++++|.++.          + +.+..+++|++|+|++| .+..++. +.++++|++|++++|. +..+| .
T Consensus        43 ~~l~~L~~L~l~~~~i~~----------~-~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~  107 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS----------V-QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-S  107 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC----------C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-G
T ss_pred             hhcCcccEEEccCCCccc----------C-hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-h
Confidence            345555555655554431          1 12455555555555555 3444444 5555555555555542 33333 2


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      +..+++|++|++++|.+.. + ..+..+++|++|      ++++|.+... +.+. .+++|+.|++++|.+....+    
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L------~l~~n~l~~~-~~l~-~l~~L~~L~L~~N~l~~~~~----  173 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL------YLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP----  173 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEE------ECCSSCCCCC-GGGG-GCTTCSEEECCSSCCCCCGG----
T ss_pred             hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEE------EccCCcCCcc-hhhc-cCCCCCEEEccCCccccchh----
Confidence            5555555555555554332 2 234445555555      3444444332 3333 44445555554444432211    


Q ss_pred             HhccCCCccEEEEEecC
Q 041391          539 SLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~  555 (704)
                       +..+++|+.|++++|.
T Consensus       174 -l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             -GTTCTTCCEEECCSSC
T ss_pred             -hcCCCccCEEECCCCc
Confidence             3444444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=2.3e-14  Score=149.41  Aligned_cols=173  Identities=21%  Similarity=0.206  Sum_probs=107.8

Q ss_pred             cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391          412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV  491 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~  491 (704)
                      ..+++|++|++++| .+..+|. +..+++|++|++++|. +..++. +..+++|++|++++|.+. .+|. ++.+++|++
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCE
T ss_pred             hhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCE
Confidence            35666777777776 4555654 6677777777777763 344444 667777777777777643 3333 667777777


Q ss_pred             ecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccch
Q 041391          492 LKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNK  571 (704)
Q Consensus       492 L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  571 (704)
                      |      ++++|.+... +.+. .+++|+.|++++|.+...     ..+..+++|+.|++++|.+..             
T Consensus       117 L------~L~~n~i~~~-~~l~-~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~-------------  170 (291)
T 1h6t_A          117 L------SLEHNGISDI-NGLV-HLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD-------------  170 (291)
T ss_dssp             E------ECTTSCCCCC-GGGG-GCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCC-------------
T ss_pred             E------ECCCCcCCCC-hhhc-CCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCcccc-------------
Confidence            7      4666665543 5555 677777777777766542     246667777777777766432             


Q ss_pred             hhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcC
Q 041391          572 KQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQ  632 (704)
Q Consensus       572 ~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp  632 (704)
                                   ++. +..+ ++|+.|+|++|.+..+|. +..+ +|+.|++++|++...|
T Consensus       171 -------------~~~-l~~l-~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          171 -------------IVP-LAGL-TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -------------CGG-GTTC-TTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             -------------chh-hcCC-CccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence                         111 3333 367777777777766654 4555 7777777777664433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=1.8e-14  Score=164.99  Aligned_cols=148  Identities=22%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ..+++|+.|++++|.+..          +| .+..+++|++|+|++| .+..+|. +..|++|++|+|++| .+..+| .
T Consensus        40 ~~L~~L~~L~l~~n~i~~----------l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~  104 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS----------VQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-S  104 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC----------CT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred             hcCCCCCEEECcCCCCCC----------Ch-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-h
Confidence            445556666666665431          22 3555666666666665 3444444 666666666666665 333343 4


Q ss_pred             ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391          459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE  538 (704)
Q Consensus       459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~  538 (704)
                      +..|++|++|+|++|.+.. +| .+..+++|+.|      ++++|.+... +.+. .+++|+.|+|++|.+....+    
T Consensus       105 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L------~Ls~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~~~~----  170 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESL------YLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP----  170 (605)
T ss_dssp             STTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEE------ECCSSCCCCC-GGGG-SCTTCSEEECCSSCCCCCGG----
T ss_pred             hccCCCCCEEEecCCCCCC-Cc-cccCCCccCEE------ECCCCccCCc-hhhc-ccCCCCEEECcCCcCCCchh----
Confidence            5566666666666665432 22 35555666666      3555555443 4444 55566666666555543222    


Q ss_pred             HhccCCCccEEEEEecCC
Q 041391          539 SLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       539 ~L~~l~~L~~L~Ls~n~l  556 (704)
                       +..+++|+.|+|++|.+
T Consensus       171 -l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             -GTTCTTCCEEECCSSCC
T ss_pred             -hccCCCCCEEECcCCCC
Confidence             45555555665555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=3.9e-14  Score=160.63  Aligned_cols=179  Identities=20%  Similarity=0.219  Sum_probs=119.2

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      +|++|+|++|.++.          +|..+  +++|++|+|++| .++.+|   ..+++|++|+|++|. +..+|. +.. 
T Consensus        60 ~L~~L~Ls~n~L~~----------lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~-  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS----------LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA-  120 (571)
T ss_dssp             TCSEEECCSSCCSC----------CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT-
T ss_pred             CccEEEeCCCCCCc----------cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc-
Confidence            78888888887652          34444  267888888887 456777   456788888888874 444776 554 


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                       +|++|++++|.+.+ +|.   .+++|++|      ++++|.+.+.+.    .+++|+.|++++|.+.+ ++.    +. 
T Consensus       121 -~L~~L~Ls~N~l~~-lp~---~l~~L~~L------~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~----l~-  179 (571)
T 3cvr_A          121 -SLKHLDVDNNQLTM-LPE---LPALLEYI------NADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE----LP-  179 (571)
T ss_dssp             -TCCEEECCSSCCSC-CCC---CCTTCCEE------ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC----CC-
T ss_pred             -CCCEEECCCCcCCC-CCC---cCccccEE------eCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch----hh-
Confidence             78888888887554 665   56778888      577777765332    45778888888877664 332    33 


Q ss_pred             CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc----ccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391          543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG----QKDRLLEKLDLHCFPLESLPNWLSGL-N  617 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~lp~~L~~L~Ls~~~l~~lP~~l~~l-~  617 (704)
                       ++|+.|+|++|.+..                          +|. +.    ..+..|+.|+|++|.+..+|.++..+ +
T Consensus       180 -~~L~~L~Ls~N~L~~--------------------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~  231 (571)
T 3cvr_A          180 -ESLEALDVSTNLLES--------------------------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDP  231 (571)
T ss_dssp             -TTCCEEECCSSCCSS--------------------------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred             -CCCCEEECcCCCCCc--------------------------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCC
Confidence             677888887777542                          222 11    11123377788777777777777667 7


Q ss_pred             eeEEEEEcCCCC
Q 041391          618 LRKLYIRGGQLR  629 (704)
Q Consensus       618 L~~L~Ls~n~l~  629 (704)
                      |+.|+|++|.+.
T Consensus       232 L~~L~L~~N~l~  243 (571)
T 3cvr_A          232 TCTIILEDNPLS  243 (571)
T ss_dssp             TEEEECCSSSCC
T ss_pred             CCEEEeeCCcCC
Confidence            777888777774

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.52  E-value=1.4e-14  Score=168.94  Aligned_cols=135  Identities=10%  Similarity=0.038  Sum_probs=107.7

Q ss_pred             hhhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccc-cccchhhH--H
Q 041391          147 DHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFR-EKFGFDEF--M  223 (704)
Q Consensus       147 ~~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~-~~~~w~~~--~  223 (704)
                      ..-++|+||+++ |+..      ..++..+|   |+|+|||               |..+|+.|+.+. +.++|+..  .
T Consensus       299 S~eEA~eLF~~~-~g~~------~eeL~~eI---CgGLPLA---------------LkLaGs~Lr~k~~s~eeW~~~~~~  353 (1221)
T 1vt4_I          299 TPDEVKSLLLKY-LDCR------PQDLPREV---LTTNPRR---------------LSIIAESIRDGLATWDNWKHVNCD  353 (1221)
T ss_dssp             CHHHHHHHHHHH-HCCC------TTTHHHHH---CCCCHHH---------------HHHHHHHHHHSCSSHHHHHHCSCH
T ss_pred             CHHHHHHHHHHH-cCCC------HHHHHHHH---hCCCHHH---------------HHHHHHHHhCCCCCHHHHhcCChh
Confidence            345689999999 4332      22334444   9999999               888888887763 45566542  3


Q ss_pred             HHHHHHHHhhhhchhhh-HHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHH
Q 041391          224 EMIINFRNKFRNLKNES-KFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELER  302 (704)
Q Consensus       224 ~i~~~L~lSYd~L~~~l-K~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~  302 (704)
                      .+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++|.                    +.++.+|++|++
T Consensus       354 ~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe--------------------edAe~~L~eLvd  413 (1221)
T 1vt4_I          354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------------------SDVMVVVNKLHK  413 (1221)
T ss_dssp             HHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS--------------------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH--------------------HHHHHHHHHHHh
Confidence            48899999999999999 999999999999999999999999998871                    137789999999


Q ss_pred             CCCccceeecccCCCcCeEEeCHHHHHHHH
Q 041391          303 EGFIVPVRKKRRKDVNNRFKMDPLARLAVI  332 (704)
Q Consensus       303 rsli~~~~~~~~~~~~~~~~mHDll~dla~  332 (704)
                      +|||+...      ...+|+|||++++++.
T Consensus       414 RSLLq~d~------~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          414 YSLVEKQP------KESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSSSBCS------SSSEEBCCCHHHHHHH
T ss_pred             hCCEEEeC------CCCEEEehHHHHHHhc
Confidence            99999842      2368999999999764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=4.8e-14  Score=159.89  Aligned_cols=176  Identities=20%  Similarity=0.218  Sum_probs=136.0

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF  495 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~  495 (704)
                      +|++|+|++| .++.+|..+  +++|++|+|++| .+..+|   ..+++|++|++++|.+.+ +|. +..  +|++|   
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L---  125 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL---  125 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE---
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE---
Confidence            8999999997 466688766  378999999987 455788   457899999999998665 777 665  88888   


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED  575 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~  575 (704)
                         ++++|.+.+.+.    .+++|+.|++++|.+.+ ++.      .+++|+.|+|++|.+..                 
T Consensus       126 ---~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~------~l~~L~~L~Ls~N~L~~-----------------  174 (571)
T 3cvr_A          126 ---DVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE------LPTSLEVLSVRNNQLTF-----------------  174 (571)
T ss_dssp             ---ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSC-----------------
T ss_pred             ---ECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC------cCCCcCEEECCCCCCCC-----------------
Confidence               588888877443    56889999999998765 332      56889999999888532                 


Q ss_pred             hHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCe-------eEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391          576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNL-------RKLYIRGGQLRSLQGDTHKKYSTVKVLRLR  648 (704)
Q Consensus       576 ~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L-------~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~  648 (704)
                               +|. +.   ++|+.|+|++|.+..+|. +.. +|       +.|+|++|.++.+|..... +++|+.|+|+
T Consensus       175 ---------lp~-l~---~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~  238 (571)
T 3cvr_A          175 ---------LPE-LP---ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILE  238 (571)
T ss_dssp             ---------CCC-CC---TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECC
T ss_pred             ---------cch-hh---CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEee
Confidence                     444 33   589999999999988887 444 66       9999999999988887666 8899999998


Q ss_pred             CCcc
Q 041391          649 YLNE  652 (704)
Q Consensus       649 ~l~~  652 (704)
                      +++.
T Consensus       239 ~N~l  242 (571)
T 3cvr_A          239 DNPL  242 (571)
T ss_dssp             SSSC
T ss_pred             CCcC
Confidence            8653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.48  E-value=9.1e-14  Score=159.16  Aligned_cols=166  Identities=23%  Similarity=0.285  Sum_probs=111.2

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..+.  .|..+++|+.|+|++|.++.          ++. +..+++|++|+|++| .+..+| .+..+
T Consensus        44 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~----------~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l  108 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD----------IKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDL  108 (605)
T ss_dssp             TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC----------CGG-GGGCTTCCEEECCSS-CCCCCT-TSTTC
T ss_pred             CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC----------Chh-hccCCCCCEEECcCC-CCCCCh-hhccC
Confidence            4444544444444432  36777788888888776653          222 677777888888876 455565 47777


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE  518 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~  518 (704)
                      ++|++|+|++|. +..+ ..+..|++|+.|+|++|.+.. + ..++.+++|+.|      ++++|.+....+ +. .+++
T Consensus       109 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L------~Ls~N~l~~~~~-l~-~l~~  176 (605)
T 1m9s_A          109 KKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTL------SLEDNQISDIVP-LA-GLTK  176 (605)
T ss_dssp             TTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEE------ECCSSCCCCCGG-GT-TCTT
T ss_pred             CCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEE------ECcCCcCCCchh-hc-cCCC
Confidence            888888887764 3444 357777788888888777543 3 446777777777      577777766655 65 7778


Q ss_pred             CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391          519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l  556 (704)
                      |+.|+|++|.+...     ..+..+++|+.|+|++|.+
T Consensus       177 L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          177 LQNLYLSKNHISDL-----RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CCEEECCSSCCCBC-----GGGTTCTTCSEEECCSEEE
T ss_pred             CCEEECcCCCCCCC-----hHHccCCCCCEEEccCCcC
Confidence            88888887776542     2467777788888777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=3.3e-13  Score=132.00  Aligned_cols=130  Identities=18%  Similarity=0.282  Sum_probs=100.9

Q ss_pred             cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391          412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV  491 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~  491 (704)
                      ..+++|++|++++| .+..+| .+..+++|++|++++| ....+ ..+..+++|++|++++|.+....|..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56788999999997 567888 5899999999999998 44444 47888999999999999887767888888999999


Q ss_pred             ecccccccCCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391          492 LKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       492 L~~~~~~~ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l  556 (704)
                      |      ++++|.+.... ..+. .+++|+.|++++|.....++    .+..+++|+.|++++|.+
T Consensus       117 L------~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          117 L------DISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             E------ECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCC
T ss_pred             E------EecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCC
Confidence            8      58888877643 4555 88888888888887222232    467777888888877774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=3.4e-14  Score=162.65  Aligned_cols=171  Identities=15%  Similarity=0.078  Sum_probs=112.7

Q ss_pred             hhhcCCCCCccEEEcCCCCCccc------chhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc--ccCcEEee
Q 041391          375 SKWFSNLKKVKVLHLGRWKNSAK------HFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL--SNLRVLDL  446 (704)
Q Consensus       375 ~~~f~~l~~Lr~L~L~~n~l~~~------~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L--~~L~~LdL  446 (704)
                      +..+..+++|+.|+|+++.....      .+-.+....++..+..+++|++|+|++|......+..+..+  .+|++|+|
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            44567788899999987632100      00001111233334478999999999985433444556654  45999999


Q ss_pred             ecccCCC--cCCccccccCCCcEEEccCcccccc----cCccCCCCCCcceecccccccCCCCCCc----cchhhHHhCC
Q 041391          447 RCCYYLT--KLPKGLDSLKKLTYLDISECYLIEY----MPKELSSLSELQVLKGFLVTDAKPNDKI----CTLEDLGNSL  516 (704)
Q Consensus       447 s~c~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~----lP~~i~~L~~L~~L~~~~~~~ls~n~l~----~~~~~l~~~L  516 (704)
                      ++|....  .++..+..+++|++|++++|.+...    ++..+..+++|++|      ++++|.+.    ..++.+...+
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L------~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL------NFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEE------ECTTCCCSSCCHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEE------EeeccCCCccCHHHHHHHHhhC
Confidence            9885321  2333345789999999999976443    33334567889999      58877765    2344444478


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      ++|+.|++++|.+.+    ++..+..+++|+.|.++.+.
T Consensus       220 ~~L~~L~L~~~~~~~----l~~~~~~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE----LVGFFKAAANLEEFCGGSLN  254 (592)
T ss_dssp             TTCCEEECSSCBGGG----GHHHHHHCTTCCEEEECBCC
T ss_pred             CCCcEEeccCccHHH----HHHHHhhhhHHHhhcccccc
Confidence            999999999986543    44678888999999998643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=3.5e-13  Score=135.17  Aligned_cols=131  Identities=21%  Similarity=0.210  Sum_probs=67.7

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GL  459 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i  459 (704)
                      ++|++|+|++|.++.+         .|..|..+++|++|+|++|. +..+|. .+.++++|++|+|++|.. ..+|. .+
T Consensus        40 ~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL---------EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred             CCCCEEEcCCCccCcc---------CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC-CccChhHh
Confidence            5566666666655421         13445556666666666653 344442 345566666666665533 33332 34


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA  530 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~  530 (704)
                      ..+++|++|++++|.+. .+|..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+.
T Consensus       109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL------ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE------ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccCCccc-ccCcccccCCCCCEE------ECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55666666666665533 455555555555555      35555555444332224555555555555544

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.43  E-value=3.1e-13  Score=155.04  Aligned_cols=141  Identities=13%  Similarity=0.138  Sum_probs=110.8

Q ss_pred             hchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhH------
Q 041391          149 IRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEF------  222 (704)
Q Consensus       149 ~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~------  222 (704)
                      -++++||...++...    ..+.+.+.+|+++|+|+|||               |..+|..++..+  ..|+.+      
T Consensus       289 ~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLa---------------l~~~a~~l~~~~--~~w~~~l~~l~~  347 (591)
T 1z6t_A          289 EKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLV---------------VSLIGALLRDFP--NRWEYYLKQLQN  347 (591)
T ss_dssp             HHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHH---------------HHHHHHHHHHST--TCHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHH---------------HHHHHHHHhcCc--hhHHHHHHHHHH
Confidence            467899999998532    34456789999999999999               556666555432  234432      


Q ss_pred             --------------HHHHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccC
Q 041391          223 --------------MEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDT  288 (704)
Q Consensus       223 --------------~~i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~  288 (704)
                                    ..+..++..||+.||++.|.||++||+||+|+.|+.+.++.+|.++                    
T Consensus       348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------------------  407 (591)
T 1z6t_A          348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------------------  407 (591)
T ss_dssp             CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------------------
T ss_pred             hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC--------------------
Confidence                          2367799999999999999999999999999999999999999532                    


Q ss_pred             HHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhc
Q 041391          289 QEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSR  335 (704)
Q Consensus       289 ~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~  335 (704)
                       .+.+..++++|+++|||+....+    ...+|.||++++++++...
T Consensus       408 -~~~~~~~l~~L~~~~Ll~~~~~~----~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          408 -TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             -HHHHHHHHHHHHHTTSSEEEEET----TEEEEECCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHhCcCeEEecCC----CccEEEEcHHHHHHHHhhh
Confidence             23467899999999999865432    3357999999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=4.1e-14  Score=161.99  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=54.3

Q ss_pred             cceeEEEEEcCC--CC-CCcccCCC-C-CeeEEEEEcCCCCCcC-CCccCCCCCcCEEecCCCcccccc-cccccCcCCC
Q 041391          594 RLLEKLDLHCFP--LE-SLPNWLSG-L-NLRKLYIRGGQLRSLQ-GDTHKKYSTVKVLRLRYLNELNVN-WRELQALFPD  666 (704)
Q Consensus       594 ~~L~~L~Ls~~~--l~-~lP~~l~~-l-~L~~L~Ls~n~l~~lp-~~~~~~f~~L~~L~L~~l~~L~l~-~~~l~~~~p~  666 (704)
                      ++|++|+|+.|.  +. ..+..+.. + +|+.|+|++|.+.... ......+++|+.|+|++|+ +.-. ...+...+|+
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS  514 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS
T ss_pred             CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc
Confidence            478888887543  21 11122222 3 8999999999874321 1223557999999999988 3201 1112246899


Q ss_pred             ccEEeeecCCCCCCC
Q 041391          667 LEYLEKFNCPMISFF  681 (704)
Q Consensus       667 L~~L~i~~C~~L~~l  681 (704)
                      |++|++.+|. ++..
T Consensus       515 L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          515 LRYLWVQGYR-ASMT  528 (592)
T ss_dssp             CCEEEEESCB-CCTT
T ss_pred             cCeeECcCCc-CCHH
Confidence            9999999996 5543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=2.4e-13  Score=135.51  Aligned_cols=112  Identities=19%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCC
Q 041391          410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSE  488 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~  488 (704)
                      .|..+++|++|+|++|......|..|.++++|++|+|++|. +..+|.. +..+++|++|++++|.+....|..+..+++
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN  129 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence            34445555555555543222224444555555555555442 2233332 344555555555555444333444444444


Q ss_pred             cceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeC
Q 041391          489 LQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN  528 (704)
Q Consensus       489 L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~  528 (704)
                      |++|      ++++|.+....+.....+++|+.|++++|.
T Consensus       130 L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          130 LNLL------SLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEE------ECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            4444      344444444333211134444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=1.3e-12  Score=128.66  Aligned_cols=109  Identities=21%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             ccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCC
Q 041391          411 LKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSE  488 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~  488 (704)
                      |..+++|++|+|++|. +..+|. .+..+++|++|+|++|... .+|. .+..+++|++|++++|.+....+..+..+++
T Consensus        48 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence            4455555555555542 333332 2344555555555554322 2222 2345555555555555433222222444444


Q ss_pred             cceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391          489 LQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN  527 (704)
Q Consensus       489 L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n  527 (704)
                      |++|      ++++|.+....+.....+++|+.|++++|
T Consensus       126 L~~L------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          126 LKDL------RLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCEE------ECCCCccceeCHHHhccCCCccEEEecCC
Confidence            4444      34444444333321113444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=2.8e-13  Score=135.09  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             hhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HH
Q 041391          435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LG  513 (704)
Q Consensus       435 l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~  513 (704)
                      +.++++|++|+|++|......|..+..+++|++|++++|.+.+..|..++.+++|++|      ++++|.+.+..+. +.
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL------MLRSNRITCVGNDSFI  126 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE------ECTTSCCCCBCTTSST
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE------ECCCCcCCeECHhHcC
Confidence            4444444444444443222222234444444444444444433333334444444444      3444444443322 22


Q ss_pred             hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391          514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                       .+++|+.|++++|.+.+..+   ..+..+++|+.|+|++|.+.
T Consensus       127 -~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          127 -GLSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             -TCTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCCEE
T ss_pred             -CCccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcCCc
Confidence             44445555555444443222   23444555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=3.6e-15  Score=169.65  Aligned_cols=120  Identities=19%  Similarity=0.140  Sum_probs=80.1

Q ss_pred             CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccc
Q 041391          488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNN  567 (704)
Q Consensus       488 ~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~  567 (704)
                      .|+.|      ++++|.+.+. +.+. .+++|+.|++++|.+. .+|   ..+..+++|+.|+|++|.+..         
T Consensus       442 ~L~~L------~Ls~n~l~~l-p~~~-~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~~---------  500 (567)
T 1dce_A          442 DVRVL------HLAHKDLTVL-CHLE-QLLLVTHLDLSHNRLR-ALP---PALAALRCLEVLQASDNALEN---------  500 (567)
T ss_dssp             TCSEE------ECTTSCCSSC-CCGG-GGTTCCEEECCSSCCC-CCC---GGGGGCTTCCEEECCSSCCCC---------
T ss_pred             CceEE------EecCCCCCCC-cCcc-ccccCcEeecCccccc-ccc---hhhhcCCCCCEEECCCCCCCC---------
Confidence            36666      4677766653 3465 7777777777777665 233   467777777777777777432         


Q ss_pred             ccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC--cccCCCC-CeeEEEEEcCCCCCcCCCc---cCCCCC
Q 041391          568 EHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL--PNWLSGL-NLRKLYIRGGQLRSLQGDT---HKKYST  641 (704)
Q Consensus       568 ~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l--P~~l~~l-~L~~L~Ls~n~l~~lp~~~---~~~f~~  641 (704)
                                       +| .+..+ ++|+.|+|++|.+..+  |..+..+ +|+.|+|++|.+..+|...   ...+|+
T Consensus       501 -----------------lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          501 -----------------VD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             -----------------CG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             -----------------Cc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence                             33 34455 3788888888887777  7777777 8888888888887666543   234677


Q ss_pred             cCEEec
Q 041391          642 VKVLRL  647 (704)
Q Consensus       642 L~~L~L  647 (704)
                      |+.|++
T Consensus       562 L~~L~l  567 (567)
T 1dce_A          562 VSSILT  567 (567)
T ss_dssp             CSEEEC
T ss_pred             cCccCC
Confidence            777753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=2.5e-13  Score=139.26  Aligned_cols=147  Identities=22%  Similarity=0.196  Sum_probs=101.7

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      .+.++..++++++.++.          ++ .+..+++|++|++++| .+..+| .++.+++|++|+|++| .+..+|. +
T Consensus        17 ~l~~l~~l~l~~~~i~~----------~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l   81 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD----------LV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-L   81 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS----------EE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-G
T ss_pred             HHHHHHHHHhcCCCccc----------cc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-h
Confidence            35566777777776542          22 4567788888888887 566777 4788888888888887 4455555 7


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      ..+++|++|++++|.+. .+|.. .. ++|++|      ++++|.+... +.+. .+++|+.|++++|.+...     ..
T Consensus        82 ~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L------~L~~N~l~~~-~~l~-~l~~L~~L~Ls~N~i~~~-----~~  145 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRL------FLDNNELRDT-DSLI-HLKNLEILSIRNNKLKSI-----VM  145 (263)
T ss_dssp             TTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEE------ECCSSCCSBS-GGGT-TCTTCCEEECTTSCCCBC-----GG
T ss_pred             ccCCCCCEEECCCCccC-CcCcc-cc-CcccEE------EccCCccCCC-hhhc-CcccccEEECCCCcCCCC-----hH
Confidence            88888888888888754 34542 23 777777      4777776653 4566 777888888887776542     24


Q ss_pred             hccCCCccEEEEEecCCC
Q 041391          540 LEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~  557 (704)
                      +..+++|+.|++++|.+.
T Consensus       146 l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             GGGCTTCCEEECTTSCCC
T ss_pred             HccCCCCCEEECCCCcCc
Confidence            667777777777777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=3.7e-15  Score=169.61  Aligned_cols=209  Identities=15%  Similarity=0.133  Sum_probs=128.6

Q ss_pred             cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391          412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV  491 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~  491 (704)
                      ..+++|+.|+|++| .++.+|..+++|++|+.|++++|..+..+|..+.           .+...+..|..++.+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence            45667777777776 4567777777777777777755431111111000           01112233334444444444


Q ss_pred             ecccccc--------cCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCc
Q 041391          492 LKGFLVT--------DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ  563 (704)
Q Consensus       492 L~~~~~~--------~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~  563 (704)
                      |......        .+..|.    +..+.  ...|+.|++++|.+.+ ++   . +..+++|+.|+|++|.+.      
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~----i~~l~--~~~L~~L~Ls~n~l~~-lp---~-~~~l~~L~~L~Ls~N~l~------  476 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENS----VLKME--YADVRVLHLAHKDLTV-LC---H-LEQLLLVTHLDLSHNRLR------  476 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHH----HHHHH--HTTCSEEECTTSCCSS-CC---C-GGGGTTCCEEECCSSCCC------
T ss_pred             Ccchhhcccchhhhhhhhccc----ccccC--ccCceEEEecCCCCCC-Cc---C-ccccccCcEeecCccccc------
Confidence            4200000        111121    11222  1358899999998765 33   3 788899999999998853      


Q ss_pred             ccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcC-CCccCCCCC
Q 041391          564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQ-GDTHKKYST  641 (704)
Q Consensus       564 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp-~~~~~~f~~  641 (704)
                                          .+|..+..+ ++|+.|+|++|.+..+| .+..+ +|+.|+|++|.+..++ ......+++
T Consensus       477 --------------------~lp~~~~~l-~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          477 --------------------ALPPALAAL-RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             --------------------CCCGGGGGC-TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             --------------------ccchhhhcC-CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence                                356667777 48999999999998888 67777 9999999999998884 444556899


Q ss_pred             cCEEecCCCccccccc--ccccCcCCCccEEe
Q 041391          642 VKVLRLRYLNELNVNW--RELQALFPDLEYLE  671 (704)
Q Consensus       642 L~~L~L~~l~~L~l~~--~~l~~~~p~L~~L~  671 (704)
                      |+.|+|++++.-.+..  ..+...+|+|+.|+
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            9999998865332111  11113478888875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=1.1e-12  Score=134.45  Aligned_cols=149  Identities=19%  Similarity=0.177  Sum_probs=124.7

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+++|++|++++|.++          .+| .+..+++|++|+|++| .+..+|. +.++++|++|+|++| .+..+|.
T Consensus        37 ~~~l~~L~~L~l~~n~i~----------~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~  102 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ----------SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNG  102 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC----------CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTT
T ss_pred             hhhcCcCcEEECcCCCcc----------cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCc
Confidence            667899999999999776          334 6888999999999998 5777887 999999999999998 5566765


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                      .. . ++|++|++++|.+.. +| .++.+++|++|      ++++|.+... +.+. .+++|+.|++++|.+...     
T Consensus       103 ~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L------~Ls~N~i~~~-~~l~-~l~~L~~L~L~~N~i~~~-----  165 (263)
T 1xeu_A          103 IP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL------SIRNNKLKSI-VMLG-FLSKLEVLDLHGNEITNT-----  165 (263)
T ss_dssp             CC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE------ECTTSCCCBC-GGGG-GCTTCCEEECTTSCCCBC-----
T ss_pred             cc-c-CcccEEEccCCccCC-Ch-hhcCcccccEE------ECCCCcCCCC-hHHc-cCCCCCEEECCCCcCcch-----
Confidence            43 3 899999999998654 44 58899999999      6999998765 5777 899999999999998754     


Q ss_pred             HHhccCCCccEEEEEecCCC
Q 041391          538 ESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      ..+..+++|+.|++++|.+.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCCccc
Confidence            45888999999999999854

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=8.1e-13  Score=130.21  Aligned_cols=178  Identities=17%  Similarity=0.208  Sum_probs=126.0

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSL  462 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L  462 (704)
                      +.++.+++.++          .+|..+  .++|++|+|++|. +..+|. .+.++++|++|++++|.. ..+|. .+..+
T Consensus        10 ~~v~c~~~~l~----------~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l   75 (208)
T 2o6s_A           10 TTVECYSQGRT----------SVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKL   75 (208)
T ss_dssp             TEEECCSSCCS----------SCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTC
T ss_pred             CEEEecCCCcc----------CCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCcc-CccChhhcCCC
Confidence            45666666554          334333  4588999999985 445554 478899999999998854 45554 46889


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      ++|++|++++|.+....+..++.+++|++|      ++++|.+....+.....+++|+.|++++|.+....+   ..+..
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~  146 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKEL------ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---GVFDR  146 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTT
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEE------EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH---HHhcc
Confidence            999999999998765444557889999999      588888887766543388999999999998775433   34778


Q ss_pred             CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391          543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD  593 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp  593 (704)
                      +++|+.|++++|.+...++.       +..+ ....+...+.+|..+..++
T Consensus       147 l~~L~~L~l~~N~~~~~~~~-------l~~L-~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDCTCPG-------IRYL-SEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTCCEEECCSCCBCCCTTT-------THHH-HHHHHHCTTTBBCTTSSBC
T ss_pred             CCCccEEEecCCCeecCCCC-------HHHH-HHHHHhCCceeeccCcccc
Confidence            89999999999987654432       1111 2344556677777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=9.2e-13  Score=141.55  Aligned_cols=161  Identities=19%  Similarity=0.108  Sum_probs=127.0

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      ..+++|+|++|.++.+.         +..+. .+++|++|+|++|. +..++ ..|.++++|++|+|++|......+..+
T Consensus        39 ~~l~~L~Ls~N~l~~l~---------~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  108 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLR---------AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF  108 (361)
T ss_dssp             TTCSEEECCSSCCCEEC---------TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCEEECCCCCCCccC---------hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence            45899999999886422         23455 89999999999985 55555 569999999999999985544444568


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHH---hCCCCCcEEEEEeeCCCCchhhH
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG---NSLKELRKLSIYVNNNAIPIEKL  536 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~---~~L~~L~~L~L~~n~~~~~~~~l  536 (704)
                      ..+++|++|+|++|.+....|..+..+++|++|      ++++|.+......+.   ..+++|+.|++++|.+.....  
T Consensus       109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L------~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--  180 (361)
T 2xot_A          109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL------YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--  180 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE------ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH--
T ss_pred             CCCcCCCEEECCCCcccEECHHHhCCcccCCEE------ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH--
Confidence            999999999999999877777889999999999      699999888766553   278999999999999875433  


Q ss_pred             HHHhccCCC--ccEEEEEecCCCCCCC
Q 041391          537 SESLEKFKN--LLKLKIAWGAGYSKCR  561 (704)
Q Consensus       537 ~~~L~~l~~--L~~L~Ls~n~l~~~~~  561 (704)
                       ..+..++.  |+.|+|++|.+...|.
T Consensus       181 -~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          181 -TDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             -HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             -HHhhhccHhhcceEEecCCCccCCcC
Confidence             45666766  4889999999776553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=2.6e-12  Score=128.02  Aligned_cols=154  Identities=19%  Similarity=0.259  Sum_probs=124.0

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccccC
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDSLK  463 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~  463 (704)
                      +.++++++.++          .+|..+.  ++|++|+|++|. +..+|. .+..+++|++|+|++|......|..+..++
T Consensus        14 ~~v~c~~~~l~----------~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~   80 (220)
T 2v9t_B           14 NIVDCRGKGLT----------EIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR   80 (220)
T ss_dssp             TEEECTTSCCS----------SCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred             CEEEcCCCCcC----------cCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence            57888888765          4455443  689999999985 555554 689999999999999876666688899999


Q ss_pred             CCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          464 KLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       464 ~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      +|++|++++|.+. .+|. .+..+++|++|      ++++|.+....+.....+++|+.|++++|.+....+   ..+..
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~  150 (220)
T 2v9t_B           81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLL------LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFSP  150 (220)
T ss_dssp             SCCEEECCSSCCC-CCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTT
T ss_pred             CCCEEECCCCcCC-ccCHhHccCCCCCCEE------ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHhC
Confidence            9999999999866 4554 47889999999      699999888765433389999999999999876544   45788


Q ss_pred             CCCccEEEEEecCCCCCCC
Q 041391          543 FKNLLKLKIAWGAGYSKCR  561 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~  561 (704)
                      +++|+.|+|++|.+...|.
T Consensus       151 l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CTTCCEEECCSSCEECSGG
T ss_pred             CCCCCEEEeCCCCcCCCCc
Confidence            9999999999999776553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.33  E-value=3.6e-14  Score=162.46  Aligned_cols=61  Identities=10%  Similarity=0.020  Sum_probs=35.0

Q ss_pred             CeeEEEEEcCCCCCcCC-CccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391          617 NLRKLYIRGGQLRSLQG-DTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM  677 (704)
Q Consensus       617 ~L~~L~Ls~n~l~~lp~-~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~  677 (704)
                      +|+.|+|++|.+..... .....+++|+.|+|++|+.-+.....+...+|+|+.|++.+|+.
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            67777777777632211 11134677788877777642211111224567788888877754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=5.1e-12  Score=126.69  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=123.3

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK-GLDSL  462 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L  462 (704)
                      .+.++.+++.++          .+|..+.  ++|++|+|++|......|..+.++++|++|+|++|. +..+|. .+..+
T Consensus        21 ~~~v~c~~~~l~----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l   87 (229)
T 3e6j_A           21 GTTVDCRSKRHA----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSL   87 (229)
T ss_dssp             TTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             CCEeEccCCCcC----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccC
Confidence            457888888665          4454443  889999999986555557789999999999999985 466664 46899


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      ++|++|++++|.+....+..+..+++|++|      ++++|.+...+..+. .+++|+.|++++|.+....+   ..+..
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L------~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~~---~~~~~  157 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKEL------FMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIPH---GAFDR  157 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCCT---TTTTT
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeE------eccCCcccccCcccc-cCCCCCEEECCCCcCCccCH---HHHhC
Confidence            999999999998765555557899999999      699999887767777 99999999999998875433   45788


Q ss_pred             CCCccEEEEEecCCCCCCC
Q 041391          543 FKNLLKLKIAWGAGYSKCR  561 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~~~~~  561 (704)
                      +++|+.|++++|.+...+.
T Consensus       158 l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEEeeCCCccCCcc
Confidence            9999999999999776553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=1.1e-12  Score=141.02  Aligned_cols=154  Identities=20%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh-ccccCcEEeeecccCCCcCCcccccc
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA-NLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~-~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      ++++++++.++          .+|..+.  ..+++|+|++|. +..++.. +. ++.+|++|+|++|......|..+..+
T Consensus        21 ~~l~c~~~~l~----------~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           21 NILSCSKQQLP----------NVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TEEECCSSCCS----------SCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEEEeCCCCcC----------ccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            68899998775          4455443  458999999984 6666544 55 89999999999985554445679999


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK  542 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~  542 (704)
                      ++|++|+|++|.+....+..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+..........+..
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVL------LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEE------ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEE------ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            999999999999765555568999999999      69999988775543339999999999999987543322222267


Q ss_pred             CCCccEEEEEecCCC
Q 041391          543 FKNLLKLKIAWGAGY  557 (704)
Q Consensus       543 l~~L~~L~Ls~n~l~  557 (704)
                      +++|+.|+|++|.+.
T Consensus       162 l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          162 LPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCcCCEEECCCCCCC
Confidence            899999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=3.4e-12  Score=127.15  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=112.0

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      ..+++|+|++|.++.+.        -+..|..+++|++|+|++|. +..++ ..+.++++|++|+|++|...+..|..+.
T Consensus        32 ~~~~~L~L~~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  102 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLE--------ATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK  102 (220)
T ss_dssp             TTCSEEECCSSCCCEEC--------CCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred             CCCCEEEcCCCcCCccC--------chhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence            45789999999886421        12347899999999999985 55555 4799999999999999866555556689


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI  533 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~  533 (704)
                      .+++|++|++++|.+.+..|..+..+++|++|      ++++|.+.+..+.....+++|+.|++++|.+....
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLL------SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE------ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCCEE------ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99999999999999887778889999999999      69999998885543338999999999999886544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=3.9e-12  Score=120.76  Aligned_cols=131  Identities=24%  Similarity=0.227  Sum_probs=84.1

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      .++|++|++++|.++.        ..+|..+..+++|++|+|++|. +..+ ..++.+++|++|+|++|.....+|..+.
T Consensus        23 ~~~L~~L~l~~n~l~~--------~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           23 PAAVRELVLDNCKSND--------GKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             TTSCSEEECCSCBCBT--------TBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             cccCCEEECCCCCCCh--------hhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            4677888888876541        1345556777788888888874 5555 4577777888888887755555666666


Q ss_pred             ccCCCcEEEccCcccccccC--ccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEEEeeCC
Q 041391          461 SLKKLTYLDISECYLIEYMP--KELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L~~n~~  529 (704)
                      .+++|++|++++|.+.. +|  ..++.+++|++|      ++++|.+....+    .+. .+++|+.|++++|..
T Consensus        93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L------~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL------DLFNCEVTNLNDYRESVFK-LLPQLTYLDGYDRED  159 (168)
T ss_dssp             HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE------ECCSSGGGTSTTHHHHHHT-TCSSCCEETTEETTS
T ss_pred             hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE------EeeCCcCcchHHHHHHHHH-hCccCcEecCCCCCh
Confidence            77788888888776543 33  456666666666      466666555443    233 555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=3.6e-13  Score=157.81  Aligned_cols=117  Identities=25%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             hHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC
Q 041391          408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS  487 (704)
Q Consensus       408 p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~  487 (704)
                      |..+..+..|+.|+|++|. +..+|..+.++++|++|+|++|. +..+|..|++|++|++|+|++|.+. .+|..|+.|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            4455666666666666653 44566556666666666666653 3366666666666666666666644 5566666666


Q ss_pred             CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391          488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIE  534 (704)
Q Consensus       488 ~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~  534 (704)
                      +|++|      ++++|.+...+..+. .|++|+.|+|++|.+.+.++
T Consensus       294 ~L~~L------~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          294 QLKYF------YFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TCSEE------ECCSSCCCCCCSSTT-SCTTCCCEECTTSCCCSHHH
T ss_pred             CCCEE------ECCCCCCCccChhhh-cCCCccEEeCCCCccCCCCh
Confidence            66666      466666554444455 66666666666666654443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.31  E-value=4.6e-13  Score=153.26  Aligned_cols=132  Identities=20%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             CCcccceeeeeccCCCCCCchhhh-ccccCcEEeeecccCCCc--CCccccccCCCcEEEccCcccccccCc----cCCC
Q 041391          413 NMSALRLLSLQGVYGIREIPSSIA-NLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYLDISECYLIEYMPK----ELSS  485 (704)
Q Consensus       413 ~L~~Lr~L~Ls~n~~l~~lP~~l~-~L~~L~~LdLs~c~~l~~--lP~~i~~L~~L~~L~Ls~n~~~~~lP~----~i~~  485 (704)
                      .+++|++|+|++|......+..+. .+++|++|+|++|...+.  ++..+.++++|++|++++|.+....+.    ....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            445555555555532222233333 455555555555533222  333333555555555555543322211    1224


Q ss_pred             CCCcceecccccccCCCCC--Cc-cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEe
Q 041391          486 LSELQVLKGFLVTDAKPND--KI-CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW  553 (704)
Q Consensus       486 L~~L~~L~~~~~~~ls~n~--l~-~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~  553 (704)
                      +++|++|      ++++|.  +. ..+..+...+++|+.|++++|..   ...++..+..+++|+.|.+..
T Consensus       183 ~~~L~~L------~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          183 YTSLVSL------NISCLASEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCCCCEE------ECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHHHHHCTTCSEEECSB
T ss_pred             CCcCcEE------EecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHHHhcCCcceEccccc
Confidence            4455555      244433  11 11222222445555555555421   222334455555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=4.8e-12  Score=120.15  Aligned_cols=137  Identities=21%  Similarity=0.155  Sum_probs=114.5

Q ss_pred             cCCcccceeeeeccCCC-CCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          412 KNMSALRLLSLQGVYGI-REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l-~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      ...++|++|+|++|... +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+...+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            45689999999998543 3899888999999999999985 4555 7889999999999999998776887777899999


Q ss_pred             eecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391          491 VLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      +|      ++++|.+....  ..+. .+++|+.|++++|.+....+.....+..+++|+.|++++|.+.
T Consensus        99 ~L------~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HL------NLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EE------ECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EE------eccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99      69999988754  5677 9999999999999887543322247889999999999999853

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.26  E-value=3.6e-12  Score=118.47  Aligned_cols=127  Identities=22%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      .++|+.|++++|.++.        ..+|..+..+++|++|++++| .+..+ ..++++++|++|++++|...+.+|..+.
T Consensus        16 ~~~l~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           16 PSDVKELVLDNSRSNE--------GKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             GGGCSEEECTTCBCBT--------TBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             CccCeEEEccCCcCCh--------hHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            3567777777775531        134555667777777777776 34444 4467777777777777655444666666


Q ss_pred             ccCCCcEEEccCcccccc-cCccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEE
Q 041391          461 SLKKLTYLDISECYLIEY-MPKELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSI  524 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~-lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L  524 (704)
                      .+++|++|++++|.+.+. .|..++.+++|++|      ++++|.+....+    .+. .+++|+.|++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L------~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l  147 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL------DLFNCEVTNLNDYRENVFK-LLPQLTYLDG  147 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE------ECTTCGGGGSTTHHHHHHH-HCTTCCEETT
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE------eCcCCcccchHHHHHHHHH-HCCCcccccC
Confidence            677777777777765432 22456666666666      466666554443    233 5555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=1.8e-12  Score=151.95  Aligned_cols=119  Identities=29%  Similarity=0.318  Sum_probs=100.6

Q ss_pred             chhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCC
Q 041391          374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLT  453 (704)
Q Consensus       374 ~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~  453 (704)
                      .+..|..++.|++|+|++|.+.          .+|..+..+++|++|+|++| .+..+|..|++|++|++|+|++|. +.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~----------~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~  283 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF----------NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LT  283 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS----------CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred             ChhhhccCCCCcEEECCCCCCC----------CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CC
Confidence            3556889999999999999775          46677789999999999998 466999999999999999999985 45


Q ss_pred             cCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh
Q 041391          454 KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED  511 (704)
Q Consensus       454 ~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~  511 (704)
                      .+|..|+.|++|++|+|++|.+ ..+|..|+.|++|++|      ++++|.+.+.++.
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L------~L~~N~l~~~~p~  334 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFL------GVEGNPLEKQFLK  334 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCE------ECTTSCCCSHHHH
T ss_pred             ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEE------eCCCCccCCCChH
Confidence            8999999999999999999985 5889899999999999      6999998876653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=1.1e-11  Score=120.73  Aligned_cols=129  Identities=17%  Similarity=0.183  Sum_probs=84.2

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh--hhccccCcEEeeecccCCCcCCcccccc
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS--IANLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~--l~~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      ++++++++.++          .+|..+..  +|++|+|++| .+..+|..  ++.+++|++|+|++|...+..|..+..+
T Consensus        11 ~~l~~s~~~l~----------~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLK----------EIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSCCS----------SCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CEEEcCCCCcC----------cCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence            56777777654          34444432  6777777776 35555542  6777777777777775555556677777


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP  532 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~  532 (704)
                      ++|++|++++|.+.+..|..++.+++|++|      ++++|.+.+.++.....+++|+.|++++|.+...
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTL------NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEE------ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEE------ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            777777777777665555557777777777      4777776665443222666777777777666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.25  E-value=3.5e-12  Score=118.56  Aligned_cols=132  Identities=17%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             cCCcccceeeeeccCCC-CCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          412 KNMSALRLLSLQGVYGI-REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l-~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      ...++|+.|++++|... +.+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..++.+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            34588999999998543 3889888999999999999984 4455 6789999999999999998776888787899999


Q ss_pred             eecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEE
Q 041391          491 VLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA  552 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls  552 (704)
                      +|      ++++|.+....  ..+. .+++|+.|++++|.+.+..+.....+..+++|+.|+++
T Consensus        92 ~L------~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HL------NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EE------ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EE------ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99      69999987753  5666 99999999999998865433222468889999999765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=118.22  Aligned_cols=127  Identities=22%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCC
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKK  464 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~  464 (704)
                      ++++++++.++          .+|..+.  .+|++|+|++| .+..+|..+.++++|++|+|++|......|..|..+++
T Consensus        13 ~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLK----------VLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCS----------SCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEcCCCCCC----------cCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            56788877665          3444332  57888888887 46678877888888888888887555444556788888


Q ss_pred             CcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391          465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA  530 (704)
Q Consensus       465 L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~  530 (704)
                      |++|++++|.+....|..+..+++|++|      ++++|.+....+.....+++|+.|++++|.+.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLL------SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEE------ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEE------ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8888888888666555667788888888      57777777666543326777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.17  E-value=2.4e-11  Score=116.33  Aligned_cols=130  Identities=19%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP  456 (704)
                      |..+.+|++|++++|.++.          +|. +..+. +|++|+|++| .+..+ ..++.+++|++|+|++|. +..+|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~----------i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV----------IEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIG   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS----------CCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEEC
T ss_pred             cCCcCCceEEEeeCCCCch----------hHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccC
Confidence            5667888888888887652          222 33444 8888888887 45556 457888888888888874 45566


Q ss_pred             ccc-cccCCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhh----HHhCCCCCcEEEEEeeCC
Q 041391          457 KGL-DSLKKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLED----LGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       457 ~~i-~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~----l~~~L~~L~~L~L~~n~~  529 (704)
                      ..+ ..+++|++|++++|.+ +.+|.  .++.+++|++|      ++++|.+......    +. .+++|+.|+++.|..
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L------~l~~N~i~~~~~~~~~~~~-~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYL------CILRNPVTNKKHYRLYVIY-KVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEE------ECCSSGGGGSTTHHHHHHH-HCTTCSEETTEECCH
T ss_pred             cchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEE------EecCCCCCCcHhHHHHHHH-HCCccceeCCCcCCH
Confidence            554 7888888888888875 45665  56777777777      4777776654433    44 677777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=5.1e-13  Score=130.76  Aligned_cols=155  Identities=23%  Similarity=0.186  Sum_probs=108.3

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      ...++.++++.+.+++...   ....+|..+..+++|++|+|++| .+..+| .+.++++|++|++++| .+..+|..+.
T Consensus        17 ~~~l~~l~l~~~~l~~~~~---~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~   90 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIP---PIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDA   90 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCT---TCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHH
T ss_pred             cccccCcchheeEeccccC---cHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhh
Confidence            3444444555444432110   12355667888888999999887 456678 6888889999999887 4457888777


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhh---
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEK---  535 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~---  535 (704)
                      .+++|++|++++|.+.+ +| .++.+++|++|      ++++|.+....  ..+. .+++|+.|++++|.+...++.   
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L------~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVL------YMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE------EESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTT
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEE------ECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccccccccc
Confidence            88889999998887553 55 57788888888      58888776543  3566 888999999998876443221   


Q ss_pred             ----HHHHhccCCCccEEE
Q 041391          536 ----LSESLEKFKNLLKLK  550 (704)
Q Consensus       536 ----l~~~L~~l~~L~~L~  550 (704)
                          ....+..+++|+.|+
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEEC
T ss_pred             hHHHHHHHHHhCCCcEEEC
Confidence                123477889999886

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.15  E-value=1e-10  Score=113.72  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhH--hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLK--ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~--~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      +|++|++++|.++.          ++.  .|..+++|++|+|++|...+..|..+.++++|++|+|++|...+..|..+.
T Consensus        30 ~l~~L~l~~n~i~~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   99 (192)
T 1w8a_A           30 HTTELLLNDNELGR----------ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             TCSEEECCSCCCCS----------BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             CCCEEECCCCcCCc----------cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence            89999999998763          333  378999999999999965555588899999999999999966666666689


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL  509 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~  509 (704)
                      .+++|++|++++|.+.+..|..+..+++|++|      ++++|.+.+..
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~c~c  142 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL------NLASNPFNCNC  142 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCCEE------ECTTCCBCCSG
T ss_pred             CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE------EeCCCCccCcC
Confidence            99999999999999888888889999999999      69999887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.14  E-value=6.7e-11  Score=115.20  Aligned_cols=132  Identities=24%  Similarity=0.326  Sum_probs=110.8

Q ss_pred             cceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc
Q 041391          417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL  496 (704)
Q Consensus       417 Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~  496 (704)
                      -+++++++| .++.+|..+.  .+|++|+|++| .+..+|..+..+++|++|++++|.+....+..+..+++|++|    
T Consensus        12 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L----   83 (193)
T 2wfh_A           12 DTVVRCSNK-GLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL----   83 (193)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE----
T ss_pred             CCEEEcCCC-CCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE----
Confidence            368899986 6888997654  68999999998 567899999999999999999999876666779999999999    


Q ss_pred             cccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCC
Q 041391          497 VTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCR  561 (704)
Q Consensus       497 ~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~  561 (704)
                        ++++|.+....+.....+++|+.|++++|.+....+   ..+..+++|+.|+|++|.+...|.
T Consensus        84 --~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           84 --ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             --ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             --ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCCc
Confidence              699999988876533399999999999999875433   457889999999999999766553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.14  E-value=2e-10  Score=109.92  Aligned_cols=131  Identities=20%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDS  461 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~  461 (704)
                      .+.++++++.++          .+|..+  .++|++|++++|. +..+|. .++++++|++|++++|.. ..+|. .+..
T Consensus         9 ~~~l~~~~~~l~----------~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT----------SVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK   74 (177)
T ss_dssp             TTEEECCSSCCS----------SCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT
T ss_pred             CCEEEecCCCCc----------cCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC
Confidence            356666666554          233322  2567777777764 444443 456777777777777643 34443 3567


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIE  534 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~  534 (704)
                      +++|++|++++|.+.+..+..+..+++|++|      ++++|.+...++.....+++|+.|++++|.+....+
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKEL------ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEE------ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7777777777777654444446677777777      477777666555543267777777777777665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=4.9e-11  Score=114.21  Aligned_cols=134  Identities=21%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             hccCCcccceeeeeccCCCCCCchhhhccc-cCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCcc-CCCCC
Q 041391          410 ELKNMSALRLLSLQGVYGIREIPSSIANLS-NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLS  487 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~-~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~  487 (704)
                      .+..+.+|++|++++| .+..+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.+. .+|.. ++.++
T Consensus        14 ~~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            4678899999999998 5667876 66665 99999999985 4555 67899999999999999966 45654 48999


Q ss_pred             CcceecccccccCCCCCCccchh--hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391          488 ELQVLKGFLVTDAKPNDKICTLE--DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       488 ~L~~L~~~~~~~ls~n~l~~~~~--~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      +|++|      ++++|.+.....  .+. .+++|+.|++++|.+..........+..+++|+.|+++.|.
T Consensus        89 ~L~~L------~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTEL------ILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEE------ECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEE------ECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999      699999865544  577 89999999999998764322222358889999999999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.05  E-value=3.4e-10  Score=108.25  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=105.8

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF  495 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~  495 (704)
                      ..+.++++++ .+..+|..+  ..+|++|++++|...+..+..+..+++|++|++++|.+....+..++.+++|++|   
T Consensus         8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---   81 (177)
T 2o6r_A            8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL---   81 (177)
T ss_dssp             ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---
T ss_pred             CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE---
Confidence            3578899986 578888655  4799999999986544334457899999999999998765545557899999999   


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC  560 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~  560 (704)
                         ++++|.+...++.....+++|+.|++++|.+....+   ..+..+++|+.|++++|.+...+
T Consensus        82 ---~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           82 ---YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ---ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeeccC
Confidence               699999988777643389999999999999875433   34688999999999999976543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.00  E-value=1e-11  Score=121.38  Aligned_cols=131  Identities=26%  Similarity=0.247  Sum_probs=107.4

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL  455 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l  455 (704)
                      ..|..+++|++|++++|.++          .+| .+..+++|++|+|++| .+..+|..+..+++|++|++++|. +..+
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~----------~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l  108 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIE----------KIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASL  108 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEES----------CCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred             HHHhcCCCCCEEECCCCCCc----------ccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcC
Confidence            36889999999999999775          345 7888999999999998 567899888889999999999984 5557


Q ss_pred             CccccccCCCcEEEccCcccccccC--ccCCCCCCcceecccccccCCCCCCccchhh-----------HHhCCCCCcEE
Q 041391          456 PKGLDSLKKLTYLDISECYLIEYMP--KELSSLSELQVLKGFLVTDAKPNDKICTLED-----------LGNSLKELRKL  522 (704)
Q Consensus       456 P~~i~~L~~L~~L~Ls~n~~~~~lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-----------l~~~L~~L~~L  522 (704)
                      | .+..+++|++|++++|.+.. +|  ..+..+++|++|      ++++|.+.+.++.           +. .+++|+.|
T Consensus       109 ~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L------~l~~N~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L  179 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDL------LLAGNPLYNDYKENNATSEYRIEVVK-RLPNLKKL  179 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEE------EECSCHHHHHHHTTTTHHHHHHHHHH-HCSSCSEE
T ss_pred             C-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEE------EecCCccccccccccchHHHHHHHHH-hCCCcEEE
Confidence            6 68999999999999998653 33  368899999999      5889987666543           55 89999988


Q ss_pred             EEEeeCCC
Q 041391          523 SIYVNNNA  530 (704)
Q Consensus       523 ~L~~n~~~  530 (704)
                      +  ++.+.
T Consensus       180 d--~~~i~  185 (198)
T 1ds9_A          180 D--GMPVD  185 (198)
T ss_dssp             C--CGGGT
T ss_pred             C--CcccC
Confidence            6  55543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.92  E-value=3.3e-09  Score=100.91  Aligned_cols=106  Identities=21%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-cccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSL  462 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L  462 (704)
                      .++++++++.++          .+|..+  ..+|++|+|++|......|..+.++++|++|+|++|.. ..+|.. +..+
T Consensus        11 ~~~l~~s~n~l~----------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l   77 (170)
T 3g39_A           11 GTTVDCSGKSLA----------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKL   77 (170)
T ss_dssp             TTEEECTTSCCS----------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTC
T ss_pred             CCEEEeCCCCcC----------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCC
Confidence            356666666554          234333  25666666666643333355566666666666666533 344333 4566


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT  508 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~  508 (704)
                      ++|++|++++|.+.+..+..+..+++|++|      ++++|.+...
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~L~~N~~~c~  117 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHI------WLLNNPWDCA  117 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCBCTT
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEE------EeCCCCCCCC
Confidence            666666666666443333335566666666      3555554433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.90  E-value=4.4e-09  Score=100.45  Aligned_cols=106  Identities=21%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-ccccC
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLK  463 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~  463 (704)
                      +.++++++.++          .+|..+.  ++|++|+|++|......|..+.++++|++|+|++| .+..+|.. +..++
T Consensus        15 ~~l~~~~n~l~----------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           15 TLVNCQNIRLA----------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLT   81 (174)
T ss_dssp             SEEECCSSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cEEEeCCCCCC----------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcc
Confidence            56666666554          3344442  56777777776433333555666777777777766 34445444 46667


Q ss_pred             CCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch
Q 041391          464 KLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL  509 (704)
Q Consensus       464 ~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~  509 (704)
                      +|++|++++|.+....+..+..+++|++|      ++++|.+....
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L------~L~~N~~~c~~  121 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHI------YLYNNPWDCEC  121 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEE------ECCSSCBCTTB
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEE------EeCCCCccccc
Confidence            77777777766543222236666666666      36666555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.87  E-value=4.4e-09  Score=99.98  Aligned_cols=121  Identities=20%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391          416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF  495 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~  495 (704)
                      ..+.|++++| .+..+|..+.  .+|++|+|++|...+..|..+..+++|++|++++|.+....|..+..+++|++|   
T Consensus        10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L---   83 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL---   83 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---
T ss_pred             CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE---
Confidence            4678999997 6788997663  899999999986655557779999999999999998765444557899999999   


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch---hhHHHHhccCCC
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI---EKLSESLEKFKN  545 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~---~~l~~~L~~l~~  545 (704)
                         ++++|.+....+.....+++|+.|++++|.+....   ..+..++...+.
T Consensus        84 ---~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~  133 (170)
T 3g39_A           84 ---SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG  133 (170)
T ss_dssp             ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred             ---ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence               69999988877753338999999999999876543   233344544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=4.7e-09  Score=110.87  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=71.3

Q ss_pred             CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-ccccccc
Q 041391          516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDR  594 (704)
Q Consensus       516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~  594 (704)
                      ..++..+.+.++-..   .........+++|+.|+|+.|.+..                          ++. .|..+ .
T Consensus       201 ~~~~~~l~~~~~l~~---~~~~~l~~~~~~L~~l~L~~n~i~~--------------------------I~~~aF~~~-~  250 (329)
T 3sb4_A          201 PRDINFLTIEGKLDN---ADFKLIRDYMPNLVSLDISKTNATT--------------------------IPDFTFAQK-K  250 (329)
T ss_dssp             GGGCSEEEEEECCCH---HHHHHHHHHCTTCCEEECTTBCCCE--------------------------ECTTTTTTC-T
T ss_pred             ccccceEEEeeeecH---HHHHHHHHhcCCCeEEECCCCCcce--------------------------ecHhhhhCC-C
Confidence            455666666665221   1111122347888888888776432                          222 23333 4


Q ss_pred             ceeEEEEEcCCCCCCccc-CCCC-Cee-EEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEe
Q 041391          595 LLEKLDLHCFPLESLPNW-LSGL-NLR-KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLE  671 (704)
Q Consensus       595 ~L~~L~Ls~~~l~~lP~~-l~~l-~L~-~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~  671 (704)
                      +|+.|+|..+ +..++.. +..+ +|+ .|.|.+ .++.++...+..+++|+.|.|.....-.+....+ ..+++|+.|.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence            7888888776 6666654 3444 788 888877 7777777777778888888875433222223222 2345555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.82  E-value=7.1e-09  Score=98.99  Aligned_cols=105  Identities=22%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             cceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceeccc
Q 041391          417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGF  495 (704)
Q Consensus       417 Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~  495 (704)
                      -+.+++++| .++.+|..+.  .+|++|+|++|...+..|..+.++++|++|+|++|.+.+ +|. .+..+++|++|   
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L---   86 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL---   86 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE---
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE---
Confidence            378899986 5788888664  889999999986655557778899999999999998654 554 46788999999   


Q ss_pred             ccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCc
Q 041391          496 LVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIP  532 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~  532 (704)
                         ++++|.+...++. +. .+++|+.|++++|.+...
T Consensus        87 ---~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           87 ---DLNDNHLKSIPRGAFD-NLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ---ECCSSCCCCCCTTTTT-TCTTCSEEECCSSCBCTT
T ss_pred             ---ECCCCccceeCHHHhc-cccCCCEEEeCCCCcccc
Confidence               5888888877665 55 788888888888877643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.68  E-value=3.9e-09  Score=113.53  Aligned_cols=165  Identities=15%  Similarity=0.081  Sum_probs=106.8

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCchh-hhccccCcEEeeecccCCCcCCcc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIPSS-IANLSNLRVLDLRCCYYLTKLPKG  458 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP~~-l~~L~~L~~LdLs~c~~l~~lP~~  458 (704)
                      ++.|+.|+|++|.++....     ..+...+. ...+|++|+|++|.....-... ...+.+|++|+|++|.....-...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-----~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-----TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-----HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHH-----HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            4567888999887763221     23333444 3368899999987432221222 234678889999988543322222


Q ss_pred             c-----cccCCCcEEEccCccccc----ccCccCCCCCCcceecccccccCCCCCCccc-----hhhHHhCCCCCcEEEE
Q 041391          459 L-----DSLKKLTYLDISECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICT-----LEDLGNSLKELRKLSI  524 (704)
Q Consensus       459 i-----~~L~~L~~L~Ls~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~-----~~~l~~~L~~L~~L~L  524 (704)
                      +     ...++|++|+|++|.+..    .++..+..+++|++|      ++++|.+...     ...+. ..++|+.|++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L------~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~L  218 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL------SLLHTGLGDEGLELLAAQLD-RNRQLQELNV  218 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE------ECTTSSCHHHHHHHHHHHGG-GCSCCCEEEC
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE------eCCCCCCCcHHHHHHHHHHh-cCCCcCeEEC
Confidence            2     235779999999887643    234445677888888      5888886542     12344 6778999999


Q ss_pred             EeeCCCCch-hhHHHHhccCCCccEEEEEecCCC
Q 041391          525 YVNNNAIPI-EKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       525 ~~n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      ++|.+.... ..+...+...++|++|+|++|.+.
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            998876432 345566777888999999988853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=2.4e-08  Score=105.42  Aligned_cols=252  Identities=12%  Similarity=0.118  Sum_probs=144.1

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccC-CcccceeeeeccCCCC-------------------CCc-hhhhc--
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKN-MSALRLLSLQGVYGIR-------------------EIP-SSIAN--  437 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~-L~~Lr~L~Ls~n~~l~-------------------~lP-~~l~~--  437 (704)
                      +.+|+.|.++++ +.        ...+ ..+.. +++|++|+|++|....                   .+| ..|.+  
T Consensus        24 ~~~l~~L~l~g~-i~--------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~   93 (329)
T 3sb4_A           24 ANSITHLTLTGK-LN--------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVV   93 (329)
T ss_dssp             HHHCSEEEEEEE-EC--------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEE
T ss_pred             hCceeEEEEecc-cc--------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccc
Confidence            567888888865 11        0111 22333 7889999999985330                   122 23555  


Q ss_pred             ------cccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCC---cc
Q 041391          438 ------LSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDK---IC  507 (704)
Q Consensus       438 ------L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l---~~  507 (704)
                            +.+|+.|+|.+  .+..++. .|..+++|+.|++.+|.+....+..|..+.++..+.      ...+..   ..
T Consensus        94 ~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~------~~~~~~~~~~~  165 (329)
T 3sb4_A           94 NGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP------LGSSDAYRFKN  165 (329)
T ss_dssp             TTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC------TTCTHHHHTST
T ss_pred             cccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec------Ccchhhhhccc
Confidence                  77777777776  3444443 467777777777777765444444466666665552      111000   00


Q ss_pred             ch--hhHHhCCCCCc-EEEEEeeCCCCchhhH-HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391          508 TL--EDLGNSLKELR-KLSIYVNNNAIPIEKL-SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG  583 (704)
Q Consensus       508 ~~--~~l~~~L~~L~-~L~L~~n~~~~~~~~l-~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  583 (704)
                      .+  ..+. .+.+|+ .+.+...   +.++.. ...-....++..+.+.++-...             ..          
T Consensus       166 ~i~~~~f~-~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-------------~~----------  218 (329)
T 3sb4_A          166 RWEHFAFI-EGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNA-------------DF----------  218 (329)
T ss_dssp             TTTTSCEE-ESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHH-------------HH----------
T ss_pred             cccccccc-cccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHH-------------HH----------
Confidence            00  0112 334444 3333221   122221 1111234566777776542100             00          


Q ss_pred             CCCCcccccccceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcC-EEecCCCcccccccccc
Q 041391          584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVK-VLRLRYLNELNVNWREL  660 (704)
Q Consensus       584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~-~L~L~~l~~L~l~~~~l  660 (704)
                         ..+...+++|+.|+|++|.+..+|... ..+ +|+.|+|.+| +..++...+..+++|+ .+.|.+ ..-.+....+
T Consensus       219 ---~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF  293 (329)
T 3sb4_A          219 ---KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF  293 (329)
T ss_dssp             ---HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred             ---HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhh
Confidence               001111258999999999899998764 445 9999999987 8889998888999999 999977 2222333333


Q ss_pred             cCcCCCccEEeeecCCCCCCCCCC
Q 041391          661 QALFPDLEYLEKFNCPMISFFPCD  684 (704)
Q Consensus       661 ~~~~p~L~~L~i~~C~~L~~lP~~  684 (704)
                       ..+++|+.|++.+. +++.++..
T Consensus       294 -~~c~~L~~l~l~~n-~i~~I~~~  315 (329)
T 3sb4_A          294 -MGCDNLRYVLATGD-KITTLGDE  315 (329)
T ss_dssp             -TTCTTEEEEEECSS-CCCEECTT
T ss_pred             -hCCccCCEEEeCCC-ccCccchh
Confidence             45788999988654 66777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.59  E-value=1.3e-06  Score=94.75  Aligned_cols=250  Identities=10%  Similarity=0.063  Sum_probs=150.3

Q ss_pred             CCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeec
Q 041391          370 FPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRC  448 (704)
Q Consensus       370 ~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~  448 (704)
                      +..+...+|.++ +|+.+.+..+ ++.+.         ..+|.++ +|+.+.|..  .+..++ ..|.++.+|+.+++.+
T Consensus       124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~---------~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIG---------DMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK  189 (401)
T ss_dssp             CCEECTTTTTTC-CCSEEECCTT-CCEEC---------TTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT
T ss_pred             cCEehHhhcccC-CccEEEeCCC-ccEEC---------HHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCC
Confidence            334445677775 6888888766 43222         2345554 688888886  355554 5688889999999987


Q ss_pred             ccCCCcCCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391          449 CYYLTKLPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN  527 (704)
Q Consensus       449 c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n  527 (704)
                      | .+..+|.......+|+.+.+..+  ...++ ..+.++++|+.+.      +..+ +...-...+.. .+|+.+.+.. 
T Consensus       190 n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~------l~~~-l~~I~~~aF~~-~~L~~i~lp~-  257 (401)
T 4fdw_A          190 T-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE------IPEN-VSTIGQEAFRE-SGITTVKLPN-  257 (401)
T ss_dssp             S-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE------CCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred             C-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe------cCCC-ccCcccccccc-CCccEEEeCC-
Confidence            5 56667766555688999988855  33444 4477888888883      5443 23222333313 6888888843 


Q ss_pred             CCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCC
Q 041391          528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPL  606 (704)
Q Consensus       528 ~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l  606 (704)
                      .+. .++.  .+|.++++|+.+.+..+......                     ...++ ..|..+ .+|+.+.|.. .+
T Consensus       258 ~i~-~I~~--~aF~~c~~L~~l~l~~~~~~~~~---------------------~~~I~~~aF~~c-~~L~~l~l~~-~i  311 (401)
T 4fdw_A          258 GVT-NIAS--RAFYYCPELAEVTTYGSTFNDDP---------------------EAMIHPYCLEGC-PKLARFEIPE-SI  311 (401)
T ss_dssp             TCC-EECT--TTTTTCTTCCEEEEESSCCCCCT---------------------TCEECTTTTTTC-TTCCEECCCT-TC
T ss_pred             Ccc-EECh--hHhhCCCCCCEEEeCCccccCCc---------------------ccEECHHHhhCC-ccCCeEEeCC-ce
Confidence            332 2222  56888889999998877642100                     00111 233344 4788888873 46


Q ss_pred             CCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeee
Q 041391          607 ESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKF  673 (704)
Q Consensus       607 ~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~  673 (704)
                      ..++.. +..+ +|+.|.|.. .+..++...+..+ +|+.+.+.+..--.+....+.+....++.|.+-
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             EEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            666543 3344 888888854 4677777667666 788888876533332323232222345555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.58  E-value=1e-07  Score=101.22  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             hhHhccCCcccceeeeec-cCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccc
Q 041391          407 FLKELKNMSALRLLSLQG-VYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI  476 (704)
Q Consensus       407 lp~~l~~L~~Lr~L~Ls~-n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~  476 (704)
                      +|. |..+.+|++|+|++ | .+..+| ..|++|.+|++|+|++|...+..|..|.+|++|++|+|++|.+.
T Consensus        24 ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            344 55555555555553 3 233333 34555555555555555333333334455555555555555533

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.57  E-value=6.8e-08  Score=102.54  Aligned_cols=106  Identities=18%  Similarity=0.062  Sum_probs=88.1

Q ss_pred             ceeeeeccCCCCCCchhhhccccCcEEeeec-ccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391          418 RLLSLQGVYGIREIPSSIANLSNLRVLDLRC-CYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF  495 (704)
Q Consensus       418 r~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~-c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~  495 (704)
                      ..++++++..+..+|. +..+.+|++|+|++ | .+..+| ..|+.|++|++|+|++|.+.+..|..|++|++|+.|   
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L---   85 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL---   85 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE---
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE---
Confidence            3467777536788999 99999999999996 6 555555 679999999999999999887777778999999999   


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP  532 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~  532 (704)
                         ++++|.+...++.++ ....|+.|++.+|.+...
T Consensus        86 ---~l~~N~l~~~~~~~~-~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           86 ---NLSFNALESLSWKTV-QGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             ---ECCSSCCSCCCSTTT-CSCCCCEEECCSSCCCCC
T ss_pred             ---eCCCCccceeCHHHc-ccCCceEEEeeCCCccCC
Confidence               699999998887777 444499999999988654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.50  E-value=1.5e-08  Score=108.94  Aligned_cols=136  Identities=18%  Similarity=0.126  Sum_probs=97.5

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC-chhh-----hccccCcEEeeecccCCC-
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI-PSSI-----ANLSNLRVLDLRCCYYLT-  453 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l-P~~l-----~~L~~L~~LdLs~c~~l~-  453 (704)
                      .++|++|+|++|.++..        .+..-...+.+|++|+|++|. ++.. ...+     ...++|++|+|++|.... 
T Consensus       100 ~~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~  170 (372)
T 3un9_A          100 RHALDEVNLASCQLDPA--------GLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA  170 (372)
T ss_dssp             SSCEEEEECTTCCCCHH--------HHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred             CCCceEEEecCCCCCHH--------HHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence            47999999999987531        122223345689999999984 4332 2223     245789999999985432 


Q ss_pred             ---cCCccccccCCCcEEEccCccccc----ccCccCCCCCCcceecccccccCCCCCCccc----h-hhHHhCCCCCcE
Q 041391          454 ---KLPKGLDSLKKLTYLDISECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICT----L-EDLGNSLKELRK  521 (704)
Q Consensus       454 ---~lP~~i~~L~~L~~L~Ls~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~----~-~~l~~~L~~L~~  521 (704)
                         .++..+..+++|++|+|++|.+..    .++..+...++|++|      ++++|.+...    + ..+. ..++|+.
T Consensus       171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L------~Ls~N~i~~~g~~~l~~~L~-~~~~L~~  243 (372)
T 3un9_A          171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL------NVAYNGAGDTAALALARAAR-EHPSLEL  243 (372)
T ss_dssp             HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE------ECCSSCCCHHHHHHHHHHHH-HCSSCCE
T ss_pred             HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE------ECCCCCCCHHHHHHHHHHHH-hCCCCCE
Confidence               355566788999999999998653    234556778899999      6999988643    2 2344 6789999


Q ss_pred             EEEEeeCCCCc
Q 041391          522 LSIYVNNNAIP  532 (704)
Q Consensus       522 L~L~~n~~~~~  532 (704)
                      |++++|.+...
T Consensus       244 L~Ls~N~i~~~  254 (372)
T 3un9_A          244 LHLYFNELSSE  254 (372)
T ss_dssp             EECTTSSCCHH
T ss_pred             EeccCCCCCHH
Confidence            99999998643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.45  E-value=1.7e-06  Score=93.85  Aligned_cols=225  Identities=14%  Similarity=0.152  Sum_probs=153.8

Q ss_pred             CCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecc
Q 041391          370 FPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC  449 (704)
Q Consensus       370 ~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c  449 (704)
                      +..+...+|.++ +|+.+.+.. .++.+.         +.+|.+|.+|+.++|.+| .+..+|.......+|+.+.|..+
T Consensus       146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~---------~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~  213 (401)
T 4fdw_A          146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLK---------EDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT  213 (401)
T ss_dssp             CCEECTTTTTTC-CCCEEECCT-TCCEEC---------SSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT
T ss_pred             ccEECHHhcCCC-CceEEEeCC-CccEeh---------HHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc
Confidence            445556678885 699999986 343221         256889999999999986 57778766555789999999853


Q ss_pred             cCCCcCC-ccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391          450 YYLTKLP-KGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN  527 (704)
Q Consensus       450 ~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n  527 (704)
                        +..++ ..|.++++|+.+++..+  ...++. .+.. .+|+.+.      +. +.+.......+..+++|+.+.+.++
T Consensus       214 --l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~------lp-~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          214 --LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVK------LP-NGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             --CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEE------EE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             --hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEE------eC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence              55554 45788999999999875  344544 3555 7788883      42 2333333333338899999999887


Q ss_pred             CCCC----chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEE
Q 041391          528 NNAI----PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLH  602 (704)
Q Consensus       528 ~~~~----~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls  602 (704)
                      ....    .++.  .+|.++++|+.+.|.. .+..                          ++ ..|..+ .+|+.+.|.
T Consensus       282 ~~~~~~~~~I~~--~aF~~c~~L~~l~l~~-~i~~--------------------------I~~~aF~~c-~~L~~l~lp  331 (401)
T 4fdw_A          282 TFNDDPEAMIHP--YCLEGCPKLARFEIPE-SIRI--------------------------LGQGLLGGN-RKVTQLTIP  331 (401)
T ss_dssp             CCCCCTTCEECT--TTTTTCTTCCEECCCT-TCCE--------------------------ECTTTTTTC-CSCCEEEEC
T ss_pred             cccCCcccEECH--HHhhCCccCCeEEeCC-ceEE--------------------------EhhhhhcCC-CCccEEEEC
Confidence            6531    1222  5688999999998873 2211                          11 233344 589999996


Q ss_pred             cCCCCCCcccC-CCCCeeEEEEEcCCCCCcCCCccCCCC-CcCEEecCC
Q 041391          603 CFPLESLPNWL-SGLNLRKLYIRGGQLRSLQGDTHKKYS-TVKVLRLRY  649 (704)
Q Consensus       603 ~~~l~~lP~~l-~~l~L~~L~Ls~n~l~~lp~~~~~~f~-~L~~L~L~~  649 (704)
                      .+ +..++... ...+|+.|.+.+|....++...+.+++ .++.|.+..
T Consensus       332 ~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          332 AN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             cc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            54 66665433 333999999999998888877777775 677777754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.36  E-value=1.9e-07  Score=99.66  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391          515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      .+++|+.|++.+|.+.............+++|++|+|+.|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            35677777777666542221111111245667777776655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=4.6e-07  Score=96.75  Aligned_cols=169  Identities=14%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             cCCCCCccEEEcCCCCCcc--cchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC
Q 041391          378 FSNLKKVKVLHLGRWKNSA--KHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL  455 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~--~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l  455 (704)
                      ..++++|+.|.+.......  +.|+  ....+...+..+++|+.|+|++|..+ .+|. +. +++|++|+|..|......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~--~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGC--BCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccc--cccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence            4567789999887653211  1111  11235566678899999999987433 4554 43 889999999987543322


Q ss_pred             Ccccc--ccCCCcEEEccCc--ccccc-----cCccC--CCCCCcceecccccccCCCCCCccch-hhHH--hCCCCCcE
Q 041391          456 PKGLD--SLKKLTYLDISEC--YLIEY-----MPKEL--SSLSELQVLKGFLVTDAKPNDKICTL-EDLG--NSLKELRK  521 (704)
Q Consensus       456 P~~i~--~L~~L~~L~Ls~n--~~~~~-----lP~~i--~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~--~~L~~L~~  521 (704)
                      ...+.  .+++|++|+|+.+  ...+.     +...+  ..+++|++|      ++.+|.+.... ..+.  ..+++|+.
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L------~L~~~~i~~~~~~~la~a~~~~~L~~  283 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL------GIVDAEEQNVVVEMFLESDILPQLET  283 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE------EEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE------eCCCCCCchHHHHHHHhCccCCCCCE
Confidence            23333  7899999998632  11111     11122  357899999      47777665322 2222  15789999


Q ss_pred             EEEEeeCCCCch-hhHHHHhccCCCccEEEEEecCCC
Q 041391          522 LSIYVNNNAIPI-EKLSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       522 L~L~~n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                      |+|+.|.+.... ..++..+..+++|+.|+|+.|.+.
T Consensus       284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            999998875432 234445567899999999988753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.76  E-value=1.4e-05  Score=76.61  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             hhcCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecc
Q 041391          376 KWFSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCC  449 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c  449 (704)
                      ..+...+.|++|+|++| .+...     ....+...+...++|++|+|++|. ++.     +...+...++|++|+|++|
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~-----g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVP-----TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHH-----HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHhcCCCCCEEEecCCCCCCHH-----HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            45677888888888888 76532     112455667777888888888874 432     2333455567777777776


Q ss_pred             cCCC----cCCccccccCCCcEEEc--cCcc
Q 041391          450 YYLT----KLPKGLDSLKKLTYLDI--SECY  474 (704)
Q Consensus       450 ~~l~----~lP~~i~~L~~L~~L~L--s~n~  474 (704)
                      ....    .+...+...++|++|++  ++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            4322    13344455556666666  4454

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.61  E-value=1.5e-05  Score=80.96  Aligned_cols=80  Identities=24%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             cCCcccceeeeeccCCCC--CCchhhhccccCcEEeeecccCCCcCCccccccC--CCcEEEccCcccccccCc------
Q 041391          412 KNMSALRLLSLQGVYGIR--EIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLK--KLTYLDISECYLIEYMPK------  481 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~--~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~--~L~~L~Ls~n~~~~~lP~------  481 (704)
                      .++++|+.|+|++|....  .+|..+..+++|++|+|++|.. ..+ ..+..+.  +|++|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467788888888875333  3445667888888888888744 333 3445555  888888888887665552      


Q ss_pred             -cCCCCCCcceec
Q 041391          482 -ELSSLSELQVLK  493 (704)
Q Consensus       482 -~i~~L~~L~~L~  493 (704)
                       .+..+++|+.|.
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             255677777774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.59  E-value=5.5e-05  Score=71.48  Aligned_cols=86  Identities=13%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhcc----ccCcEEeeecccCCCcC-
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANL----SNLRVLDLRCCYYLTKL-  455 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L----~~L~~LdLs~c~~l~~l-  455 (704)
                      ..|+.||+++|.++..         -...+..+++|+.|+|++|..++.-. ..++.+    ++|++|+|++|..++.- 
T Consensus        61 ~~L~~LDLs~~~Itd~---------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI---------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGG---------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCCccHH---------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4699999999977632         12456889999999999997665422 235554    47999999999755421 


Q ss_pred             CccccccCCCcEEEccCcccc
Q 041391          456 PKGLDSLKKLTYLDISECYLI  476 (704)
Q Consensus       456 P~~i~~L~~L~~L~Ls~n~~~  476 (704)
                      -..+..+++|++|++++|...
T Consensus       132 l~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTC
T ss_pred             HHHHhcCCCCCEEECCCCCCC
Confidence            134677899999999998643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.54  E-value=7e-05  Score=76.01  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccc--cCcEEeeecccCCCcCC
Q 041391          379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLS--NLRVLDLRCCYYLTKLP  456 (704)
Q Consensus       379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~--~L~~LdLs~c~~l~~lP  456 (704)
                      .++++|++|+|++|.++.+.       .+|..+..+++|++|+|++|. +..+. .+..+.  +|++|+|++|...+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~-------~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD-------DMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG-------GGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCc-------cchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            56889999999999987542       456677899999999999984 56553 356565  99999999998776666


Q ss_pred             c-------cccccCCCcEEEc
Q 041391          457 K-------GLDSLKKLTYLDI  470 (704)
Q Consensus       457 ~-------~i~~L~~L~~L~L  470 (704)
                      .       .+..+++|+.||-
T Consensus       238 ~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEESS
T ss_pred             cchhHHHHHHHHCcccCeECC
Confidence            2       3678999999973

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.53  E-value=3.8e-05  Score=73.60  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=43.9

Q ss_pred             hhHhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCC----cCCccccccCCCcEEEccCcccc
Q 041391          407 FLKELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLT----KLPKGLDSLKKLTYLDISECYLI  476 (704)
Q Consensus       407 lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~~  476 (704)
                      +...+...+.|++|+|++|..++.     +...+...++|++|+|++|....    .+...+...++|++|+|++|.+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            445667788888899888723332     33445566778888888874332    23334445567777777777643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.29  E-value=0.00013  Score=68.81  Aligned_cols=61  Identities=15%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             CcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC-Ccccccc----CCCcEEEccCcc
Q 041391          414 MSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-PKGLDSL----KKLTYLDISECY  474 (704)
Q Consensus       414 L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-P~~i~~L----~~L~~L~Ls~n~  474 (704)
                      -..|+.|||++|.....--..+.++++|++|+|++|..++.- -..+..+    ++|++|++++|.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            357899999998632222244678888899999888655421 1223333    357888888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.23  E-value=0.0027  Score=68.16  Aligned_cols=276  Identities=12%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccC------------
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVY------------  426 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~------------  426 (704)
                      .+..+... +.+..+...+|.+|.+|+.+++..+ ++.+.         ...|.++..|+.+.+..+-            
T Consensus        72 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---------~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~  140 (394)
T 4fs7_A           72 KVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIG---------RCTFSGCYALKSILLPLMLKSIGVEAFKGCD  140 (394)
T ss_dssp             TEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEEC---------TTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred             CceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEcc---------chhhcccccchhhcccCceeeecceeeeccc
Confidence            44444332 3344455567888888888888654 32211         1234455555554443210            


Q ss_pred             --------CCCCC-chhhhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccC-ccCCCCCCcceeccc
Q 041391          427 --------GIREI-PSSIANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGF  495 (704)
Q Consensus       427 --------~l~~l-P~~l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~  495 (704)
                              ....+ ...|.++.+|+.+.+..+  ...++ ..+..+.+|+.+.+..+  ...++ ..+.++..|+.+.  
T Consensus       141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~--  214 (394)
T 4fs7_A          141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENME--  214 (394)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCC--
T ss_pred             ccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceee--
Confidence                    01111 234677888999998753  33444 34777889999988766  23333 3466777777763  


Q ss_pred             ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391          496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED  575 (704)
Q Consensus       496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~  575 (704)
                          +..+. ...-.... ...+|+.+.+.... . .+..  ..+..+..|+.+.+..+...-. .............. 
T Consensus       215 ----~~~~~-~~i~~~~~-~~~~l~~i~ip~~~-~-~i~~--~~f~~~~~l~~~~~~~~~~~i~-~~~F~~~~~l~~~~-  282 (394)
T 4fs7_A          215 ----FPNSL-YYLGDFAL-SKTGVKNIIIPDSF-T-ELGK--SVFYGCTDLESISIQNNKLRIG-GSLFYNCSGLKKVI-  282 (394)
T ss_dssp             ----CCTTC-CEECTTTT-TTCCCCEEEECTTC-C-EECS--STTTTCSSCCEEEECCTTCEEC-SCTTTTCTTCCEEE-
T ss_pred             ----cCCCc-eEeehhhc-ccCCCceEEECCCc-e-eccc--ccccccccceeEEcCCCcceee-ccccccccccceec-
Confidence                32221 11111222 44667777664321 1 1111  3456677777777754431100 00000000000000 


Q ss_pred             hHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391          576 EAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE  652 (704)
Q Consensus       576 ~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~  652 (704)
                          .....++. .+... .+|+.+.+..+ +..++.. +... +|+.++|.. .++.+....+..+.+|+.+.|...  
T Consensus       283 ----~~~~~i~~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--  353 (394)
T 4fs7_A          283 ----YGSVIVPEKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--  353 (394)
T ss_dssp             ----ECSSEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--
T ss_pred             ----cCceeecccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--
Confidence                00001111 22222 47777777543 4555443 3334 788888854 366777767777778888777532  


Q ss_pred             cc-cccccccCcCCCccEEeee
Q 041391          653 LN-VNWRELQALFPDLEYLEKF  673 (704)
Q Consensus       653 L~-l~~~~l~~~~p~L~~L~i~  673 (704)
                      +. +....+ ..+++|+.+.+.
T Consensus       354 l~~I~~~aF-~~C~~L~~i~lp  374 (394)
T 4fs7_A          354 LRKIGANAF-QGCINLKKVELP  374 (394)
T ss_dssp             CCEECTTTB-TTCTTCCEEEEE
T ss_pred             ccEehHHHh-hCCCCCCEEEEC
Confidence            22 222222 235666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.01  E-value=0.0087  Score=64.15  Aligned_cols=52  Identities=15%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             ceeEEEEEcCCCCCCcccCC-CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391          595 LLEKLDLHCFPLESLPNWLS-GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR  648 (704)
Q Consensus       595 ~L~~L~Ls~~~l~~lP~~l~-~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~  648 (704)
                      .|+.+.+.. .+..++.... .. +|+.+.|..+ ++.+....+.++.+|+.+.|.
T Consensus       289 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          289 ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            555555532 3444443322 22 6666666543 555555555566666666663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.95  E-value=0.0034  Score=67.39  Aligned_cols=215  Identities=13%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCc
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTK  454 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~  454 (704)
                      .+|.++++|+.+.+..+-.+ +         -...|.++.+|+.+.+..+  +..++ ..+.++..|+.+.+..+  ...
T Consensus       156 ~aF~~c~~L~~i~l~~~~~~-I---------~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~  221 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSMET-L---------HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYY  221 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCCE-E---------CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCE
T ss_pred             hhhcccCCCcEEecCCccce-e---------ccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceE
Confidence            45677777777777654211 0         0234666677777777653  33333 33556666666666543  222


Q ss_pred             CCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch
Q 041391          455 LPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI  533 (704)
Q Consensus       455 lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~  533 (704)
                      +........+|+.+.+....  ..+. ..+..+..|+.+.      +..+...-....+. .+..|+.+....+.+    
T Consensus       222 i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~------~~~~~~~i~~~~F~-~~~~l~~~~~~~~~i----  288 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESIS------IQNNKLRIGGSLFY-NCSGLKKVIYGSVIV----  288 (394)
T ss_dssp             ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEE------ECCTTCEECSCTTT-TCTTCCEEEECSSEE----
T ss_pred             eehhhcccCCCceEEECCCc--eecccccccccccceeEE------cCCCcceeeccccc-cccccceeccCceee----
Confidence            33333344566666665431  1222 2345556666652      33222111112233 556666665543321    


Q ss_pred             hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCCCCCcc-
Q 041391          534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPLESLPN-  611 (704)
Q Consensus       534 ~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l~~lP~-  611 (704)
                      +.  ..+..+.+|+.+.+..+- .                          .++ ..|..+ .+|+.+.|..+ +..++. 
T Consensus       289 ~~--~~F~~~~~L~~i~l~~~i-~--------------------------~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~  337 (394)
T 4fs7_A          289 PE--KTFYGCSSLTEVKLLDSV-K--------------------------FIGEEAFESC-TSLVSIDLPYL-VEEIGKR  337 (394)
T ss_dssp             CT--TTTTTCTTCCEEEECTTC-C--------------------------EECTTTTTTC-TTCCEECCCTT-CCEECTT
T ss_pred             cc--cccccccccccccccccc-c--------------------------eechhhhcCC-CCCCEEEeCCc-ccEEhHH
Confidence            11  346677778877774321 1                          111 223333 57888888543 556654 


Q ss_pred             cCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391          612 WLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY  649 (704)
Q Consensus       612 ~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~  649 (704)
                      .+... +|+.+.|..+ +..+....+.++++|+.+.|..
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            34445 9999999766 7888888888889999998854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.46  E-value=0.13  Score=54.49  Aligned_cols=54  Identities=20%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             cceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391          594 RLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR  648 (704)
Q Consensus       594 ~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~  648 (704)
                      .+|+.+.+..+ +..++... ... +|+.+.+.++.++.++...+..+.+|+.+.|.
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            35666666432 34444332 233 77777777666666666666666677777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.96  E-value=0.36  Score=50.85  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             cceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEec
Q 041391          594 RLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL  647 (704)
Q Consensus       594 ~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L  647 (704)
                      .+|+.+.+.++.+..++.. +... +|+.+.|..+ ++.+....+..+.+|+.+.|
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            4666666665555555433 2333 6666666432 55555555555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.88  E-value=0.058  Score=47.99  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=33.4

Q ss_pred             EEEEEcCCCC--CCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391          598 KLDLHCFPLE--SLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN  651 (704)
Q Consensus       598 ~L~Ls~~~l~--~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~  651 (704)
                      .++.+++.++  .+|..+.. +|++|+|++|+++.++...+..+++|+.|.|.+++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~-~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPV-DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCT-TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCCc-CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555555565  66644322 67777777777777776666666777777776644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.78  E-value=0.5  Score=50.20  Aligned_cols=127  Identities=15%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             hccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccC-ccCCCC
Q 041391          410 ELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMP-KELSSL  486 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L  486 (704)
                      +|.++..|+.+.+..+  ...++ ..+.++.+|+.+.+..  .+..++. .|.++.+|+.+.+..+  ...+. ..|.++
T Consensus       260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C  333 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred             eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence            3555666666666543  22222 3355566666666653  2344433 3556666777766543  22332 336666


Q ss_pred             CCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391          487 SELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       487 ~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                      ++|+.+.      +..+ +...-...+.++++|+.+.+.++..      ...++.....|+.+.+..+.
T Consensus       334 ~~L~~i~------ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~------~~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          334 EQLERIA------IPSS-VTKIPESAFSNCTALNNIEYSGSRS------QWNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTCCEEE------ECTT-CCBCCGGGGTTCTTCCEEEESSCHH------HHHTCBCCCCC---------
T ss_pred             CCCCEEE------ECcc-cCEEhHhHhhCCCCCCEEEECCcee------ehhhhhccCCCCEEEeCCCC
Confidence            6676662      3322 2222222222667777777765421      11445666677777665443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.96  E-value=0.13  Score=49.25  Aligned_cols=67  Identities=10%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             HhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCC----cCCccccccCCCcEEEccCccc
Q 041391          409 KELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLT----KLPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       409 ~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      ..+.+-+.|+.|+|++|..++.     +-..+..-..|+.|+|++|....    .+-..+..-+.|++|+|++|.+
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3345567788888876423332     22334445667777777764321    2222233345566666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.28  E-value=0.33  Score=43.02  Aligned_cols=34  Identities=32%  Similarity=0.339  Sum_probs=18.4

Q ss_pred             cCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcc
Q 041391          440 NLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY  474 (704)
Q Consensus       440 ~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~  474 (704)
                      +|++|+|++| .+..+|.. |..+++|++|+|.+|.
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            4566666655 33444433 4555666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.24  E-value=0.35  Score=46.20  Aligned_cols=67  Identities=16%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             cCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCCC-----CCchhhhccccCcEEeeeccc
Q 041391          378 FSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR-----EIPSSIANLSNLRVLDLRCCY  450 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~-----~lP~~l~~L~~L~~LdLs~c~  450 (704)
                      +.+-+.|+.|+|+++ .+...     ....+-..+..-+.|+.|+|++|. ++     .+...+..-+.|++|+|++|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~-----ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKE-----RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHH-----HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HhcCCCccEEECCCCCCCCHH-----HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            445566666666654 44311     112344455556666677776653 32     122333344566677776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	704
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 15/243 (6%)

Query: 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLD 469
           + KN+  L  L L      +  P + A L  L  L L     L +LP+ +   K L  L 
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 106

Query: 470 ISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN 529
           + E  + +      + L+++ V++        P             +K+L  + I   N 
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGT----NPLKSSGIENGAFQGMKKLSYIRIADTN- 161

Query: 530 AIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF 589
              I  + + L    +L +L +  G   +K         +N  +   +        +G+ 
Sbjct: 162 ---ITTIPQGL--PPSLTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 590 GQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDT-HKKYSTVKVLRLR 648
                L E    +   ++          ++ +Y+    + ++  +         K     
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 649 YLN 651
            ++
Sbjct: 276 GVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 427 GIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSS 485
           G+ ++P  +    +  +LDL+    +T++  G   +LK L  L +    + +  P   + 
Sbjct: 21  GLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 486 LSELQVL 492
           L +L+ L
Sbjct: 78  LVKLERL 84

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 413 NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISE 472
              +L  L++     + E+P+       L  L      +L ++P   +  + L  L +  
Sbjct: 282 LPPSLEELNVSN-NKLIELPALP---PRLERLIASFN-HLAEVP---ELPQNLKQLHVEY 333

Query: 473 CYLIEYMPKELSSLSELQV 491
             L    P    S+ +L++
Sbjct: 334 NPL-REFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL 496
              +L  L++     L +LP     L++   L  S  +L E +P+   +L +L V     
Sbjct: 282 LPPSLEELNVSNNK-LIELPALPPRLER---LIASFNHLAE-VPELPQNLKQLHVE---- 332

Query: 497 VTDAKPNDKICTLEDLGNSLKELR 520
                  + +    D+  S+++LR
Sbjct: 333 ------YNPLREFPDIPESVEDLR 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           +  + +++ L+ L            SS+ANL+N+  L       ++ L   L +L ++T 
Sbjct: 322 ISPVSSLTKLQRLFFANNK--VSDVSSLANLTNINWLSAGHN-QISDLT-PLANLTRITQ 377

Query: 468 LDISE 472
           L +++
Sbjct: 378 LGLND 382

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 411 LKNMSALRLLSLQ----GVYGIREIPSSIANLSNLRVLDLRCCYY----LTKLPKGL-DS 461
            +  S LR+L L            + +++    +LR LDL         + +L + +   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 462 LKKLTYLDISECYLIEYMPKELSSLSE 488
              L  L + + Y  E M   L +L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 430 EIPSSIANLSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE 488
           +       L+ L+ L L  CY +  +    L  +  L  L +        +     +L  
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH 250

Query: 489 LQVLKGFLVTDAKP 502
           LQ+      T A+P
Sbjct: 251 LQINCSHFTTIARP 264

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 430 EIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDIS 471
            +P  +  L  L  L++       ++P+   +L++      +
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492
            NL  LDLR       LP+GL  LK L  L++S   L   +P +  +L    V 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 409 KELKNMSALRLLSLQGVY-GIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTY 467
           ++    +    + L G+   I ++ ++++ L   + L L     + K+   L  ++ L  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRI 74

Query: 468 LDISECYLIEYM 479
           L +    + +  
Sbjct: 75  LSLGRNLIKKIE 86

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 428 IREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYL 475
           I +      N    R LDLR    +  +     +L +   +D S+  +
Sbjct: 8   IEQAAQYT-NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEI 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	704
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.24
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.12
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.09
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=6.2e-20  Score=191.05  Aligned_cols=251  Identities=21%  Similarity=0.212  Sum_probs=148.2

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeec-cCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG-VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~-n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      +++.|+|+++.+++.       ..+|..++++++|++|+|++ |...+.+|.+|++|++|++|+|++|...+..|..+..
T Consensus        51 ~v~~L~L~~~~l~g~-------~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP-------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CEEEEEEECCCCSSC-------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             EEEEEECCCCCCCCC-------CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc
Confidence            466677777765532       14567777777777777775 4445567777777777777777777665556666777


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCC-cEEEEEeeCCCCchhhHHHH
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKEL-RKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L-~~L~L~~n~~~~~~~~l~~~  539 (704)
                      +.+|+++++++|.....+|..+++++.|+++      ++++|.+.+.++ .+. .+..+ +.+.++.|++.+..+   ..
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l------~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~---~~  193 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGI------TFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIP---PT  193 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEE------ECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECC---GG
T ss_pred             hhhhcccccccccccccCchhhccCccccee------eccccccccccccccc-ccccccccccccccccccccc---cc
Confidence            7777777777777777777777777777777      466776665544 344 55554 566666666554333   23


Q ss_pred             hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-Ce
Q 041391          540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NL  618 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L  618 (704)
                      +..+.. ..+++..+...                         +.+|..+..+ .+|+.|+++++.+...+..+... +|
T Consensus       194 ~~~l~~-~~l~l~~~~~~-------------------------~~~~~~~~~~-~~l~~l~~~~~~l~~~~~~~~~~~~L  246 (313)
T d1ogqa_         194 FANLNL-AFVDLSRNMLE-------------------------GDASVLFGSD-KNTQKIHLAKNSLAFDLGKVGLSKNL  246 (313)
T ss_dssp             GGGCCC-SEEECCSSEEE-------------------------ECCGGGCCTT-SCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred             cccccc-ccccccccccc-------------------------cccccccccc-cccccccccccccccccccccccccc
Confidence            444433 24555444311                         1223333333 36666666666655444455555 67


Q ss_pred             eEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCccccccccccc--CcCCCccEEeeecCCCCCCCC
Q 041391          619 RKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ--ALFPDLEYLEKFNCPMISFFP  682 (704)
Q Consensus       619 ~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~--~~~p~L~~L~i~~C~~L~~lP  682 (704)
                      +.|+|++|++. .+|... ..+++|++|+|+++. +.  . .++  +.+.+|+.+.+.+++.|...|
T Consensus       247 ~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~-l~--g-~iP~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNN-LC--G-EIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEEECCSSCCEECCCGGG-GGCTTCCEEECCSSE-EE--E-ECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccCccCeecccCChHH-hCCCCCCEEECcCCc-cc--c-cCCCcccCCCCCHHHhCCCccccCCC
Confidence            77777777665 455443 335666666666643 21  0 111  345566666666666555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=1e-19  Score=189.37  Aligned_cols=247  Identities=19%  Similarity=0.156  Sum_probs=190.6

Q ss_pred             eeeeeecccCCCCCc--chhhcCCCCCccEEEcCC-CCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhh
Q 041391          359 TVSALVNVSEQFPDF--QSKWFSNLKKVKVLHLGR-WKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI  435 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~--~~~~f~~l~~Lr~L~L~~-n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l  435 (704)
                      +|..+......+...  .+..+.++++|++|+|++ |.+++         .+|..|+++++|++|+|++|...+..|..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g---------~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~  121 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG---------PIPPAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES---------CCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc---------ccccccccccccchhhhccccccccccccc
Confidence            455555444444332  345789999999999986 55542         578999999999999999997666677779


Q ss_pred             hccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCc-ceecccccccCCCCCCccchhhHHh
Q 041391          436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL-QVLKGFLVTDAKPNDKICTLEDLGN  514 (704)
Q Consensus       436 ~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L-~~L~~~~~~~ls~n~l~~~~~~l~~  514 (704)
                      ..+.+|+++++++|.....+|..++++++|+++++++|.+.+.+|..+..+..+ +.+      .++.|++.+..+....
T Consensus       122 ~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l------~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM------TISRNRLTGKIPPTFA  195 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE------ECCSSEEEEECCGGGG
T ss_pred             cchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccc------cccccccccccccccc
Confidence            999999999999998889999999999999999999999988999988888887 556      5778888776655442


Q ss_pred             CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccccc
Q 041391          515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDR  594 (704)
Q Consensus       515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~  594 (704)
                      .+. +..+++..+...+.++   ..+..+++|+.|++..|.+..                          .+..+..+ +
T Consensus       196 ~l~-~~~l~l~~~~~~~~~~---~~~~~~~~l~~l~~~~~~l~~--------------------------~~~~~~~~-~  244 (313)
T d1ogqa_         196 NLN-LAFVDLSRNMLEGDAS---VLFGSDKNTQKIHLAKNSLAF--------------------------DLGKVGLS-K  244 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCG---GGCCTTSCCSEEECCSSEECC--------------------------BGGGCCCC-T
T ss_pred             ccc-cccccccccccccccc---ccccccccccccccccccccc--------------------------cccccccc-c
Confidence            444 4468887776655444   567888999999998887432                          11233334 5


Q ss_pred             ceeEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCccc
Q 041391          595 LLEKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNEL  653 (704)
Q Consensus       595 ~L~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L  653 (704)
                      +|+.|+|++|.+. .+|.++..+ +|++|+|++|++. .+|..  ..+.+|+.+.+.+++.+
T Consensus       245 ~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~--~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEE
T ss_pred             ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc--ccCCCCCHHHhCCCccc
Confidence            8999999999997 899999998 9999999999986 56642  33566776667665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.4e-16  Score=165.36  Aligned_cols=169  Identities=21%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+......+..+  ..+..+++|++|+|++|.++.          +| .++++++|++|++++| .+..++. ++++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~----------l~-~l~~L~~L~~L~L~~n-~i~~i~~-l~~l  109 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD----------IT-PLKNLTKLVDILMNNN-QIADITP-LANL  109 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC----------CG-GGTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC----------Cc-cccCCccccccccccc-ccccccc-cccc
Confidence            455555555555443  236778899999999997763          33 3788999999999997 4666665 8889


Q ss_pred             ccCcEEeeecccCCCc---------------------------------------------------------------C
Q 041391          439 SNLRVLDLRCCYYLTK---------------------------------------------------------------L  455 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~---------------------------------------------------------------l  455 (704)
                      ++|+.|++++|.....                                                               .
T Consensus       110 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
T d2omza2         110 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  189 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            9999998887643211                                                               0


Q ss_pred             CccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhh
Q 041391          456 PKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEK  535 (704)
Q Consensus       456 P~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~  535 (704)
                      +.....+++++.|++++|.+.+..|  ....++|++|      ++++|.+.. ++.+. .+++|+.|++++|.+.+..  
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L------~l~~n~l~~-~~~l~-~l~~L~~L~l~~n~l~~~~--  257 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL------SLNGNQLKD-IGTLA-SLTNLTDLDLANNQISNLA--  257 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE------ECCSSCCCC-CGGGG-GCTTCSEEECCSSCCCCCG--
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEE------ECCCCCCCC-cchhh-cccccchhccccCccCCCC--
Confidence            1123344556666666665443322  3445566666      366665443 34555 6667777777776655422  


Q ss_pred             HHHHhccCCCccEEEEEecCCC
Q 041391          536 LSESLEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       536 l~~~L~~l~~L~~L~Ls~n~l~  557 (704)
                         .+..+++|++|+++++.+.
T Consensus       258 ---~~~~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         258 ---PLSGLTKLTELKLGANQIS  276 (384)
T ss_dssp             ---GGTTCTTCSEEECCSSCCC
T ss_pred             ---cccccccCCEeeccCcccC
Confidence               2566667777777666643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=4.5e-16  Score=160.72  Aligned_cols=242  Identities=19%  Similarity=0.170  Sum_probs=155.6

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhhH-hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFLK-ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~-~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      +++++|+|++|.++          .+|+ +|.++++|++|++++|......|..|.++++|++|++++| .+..+|..+ 
T Consensus        31 ~~l~~L~Ls~N~i~----------~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~-   98 (305)
T d1xkua_          31 PDTALLDLQNNKIT----------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM-   98 (305)
T ss_dssp             TTCCEEECCSSCCC----------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC-
T ss_pred             CCCCEEECcCCcCC----------CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch-
Confidence            57899999999776          3443 6888999999999998655545677899999999999987 566777654 


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc---hhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~---~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                       ...|+.|++.+|.+....+..+.....+..+.      ...+.....   ...+. .+++|+.+++.+|.+... +   
T Consensus        99 -~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~------~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~~l-~---  166 (305)
T d1xkua_          99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVE------LGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITTI-P---  166 (305)
T ss_dssp             -CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE------CCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCSC-C---
T ss_pred             -hhhhhhhhccccchhhhhhhhhhccccccccc------cccccccccCCCccccc-cccccCccccccCCcccc-C---
Confidence             35788898888876543333344555555552      333322211   12344 778888888888876532 2   


Q ss_pred             HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCc-ccCCCC
Q 041391          538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWLSGL  616 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l  616 (704)
                        ...+++|+.|++++|.....                         .+..+..+ +.++.|++++|.+..++ .++..+
T Consensus       167 --~~~~~~L~~L~l~~n~~~~~-------------------------~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         167 --QGLPPSLTELHLDGNKITKV-------------------------DAASLKGL-NNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             --SSCCTTCSEEECTTSCCCEE-------------------------CTGGGTTC-TTCCEEECCSSCCCEECTTTGGGS
T ss_pred             --cccCCccCEEECCCCcCCCC-------------------------ChhHhhcc-cccccccccccccccccccccccc
Confidence              12356788888877764321                         12333344 36777777777776653 444445


Q ss_pred             -CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-----CcCCCccEEeeecCC
Q 041391          617 -NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-----ALFPDLEYLEKFNCP  676 (704)
Q Consensus       617 -~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-----~~~p~L~~L~i~~C~  676 (704)
                       +|++|+|++|+++.+|.. ...+++|+.|+|++++.-.+....+.     ..+++|+.|++.++|
T Consensus       219 ~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         219 PHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccceeeecccccccccccc-cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence             777777777777777653 33467777777777542223222221     345678888888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.3e-15  Score=157.16  Aligned_cols=246  Identities=22%  Similarity=0.199  Sum_probs=185.0

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccc
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDS  461 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~  461 (704)
                      .+++++-++..++          .+|..+.  +++++|+|++| .++.+|+ +|.++++|++|++++|......|..|.+
T Consensus        11 ~~~~~~C~~~~L~----------~lP~~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~   77 (305)
T d1xkua_          11 HLRVVQCSDLGLE----------KVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP   77 (305)
T ss_dssp             ETTEEECTTSCCC----------SCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             cCCEEEecCCCCC----------ccCCCCC--CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhC
Confidence            5677777777665          4566553  68999999998 5788885 6899999999999999776666778999


Q ss_pred             cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391          462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE  541 (704)
Q Consensus       462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~  541 (704)
                      +++|++|++++|.+ ..+|..+  ...|..|      ....|.+.............+..+.+..+..... ......+.
T Consensus        78 l~~L~~L~l~~n~l-~~l~~~~--~~~l~~L------~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-~~~~~~~~  147 (305)
T d1xkua_          78 LVKLERLYLSKNQL-KELPEKM--PKTLQEL------RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQ  147 (305)
T ss_dssp             CTTCCEEECCSSCC-SBCCSSC--CTTCCEE------ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCTTGGG
T ss_pred             CCccCEecccCCcc-CcCccch--hhhhhhh------hccccchhhhhhhhhhcccccccccccccccccc-CCCccccc
Confidence            99999999999985 4677643  3467777      3666776665554443667788888877654322 22235678


Q ss_pred             cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-Cee
Q 041391          542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLR  619 (704)
Q Consensus       542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~  619 (704)
                      .+++|+.++++.|.+..                          +|..+   +++|+.|++++|..... +..+..+ .++
T Consensus       148 ~l~~L~~l~l~~n~l~~--------------------------l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~  198 (305)
T d1xkua_         148 GMKKLSYIRIADTNITT--------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLA  198 (305)
T ss_dssp             GCTTCCEEECCSSCCCS--------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred             cccccCccccccCCccc--------------------------cCccc---CCccCEEECCCCcCCCCChhHhhcccccc
Confidence            88999999999887432                          33322   36899999999886544 4556666 999


Q ss_pred             EEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          620 KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       620 ~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      .|++++|.+..++......+++|++|+|+++..-.+. ..+ ..+|+|+.|++++| +|+.++.
T Consensus       199 ~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l-~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGL-ADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTT-TTCSSCCEEECCSS-CCCCCCT
T ss_pred             ccccccccccccccccccccccceeeecccccccccc-ccc-ccccCCCEEECCCC-ccCccCh
Confidence            9999999999998888888999999999998533221 122 46899999999998 7888865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-16  Score=158.33  Aligned_cols=174  Identities=24%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             ccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391          416 ALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG  494 (704)
Q Consensus       416 ~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~  494 (704)
                      +|++|+|++| .+..+| ..|.++++|++|+|++| .+..+| .++.+++|++|++++|.+. ..|..+..+++|+.|  
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L--  105 (266)
T d1p9ag_          32 DTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL--  105 (266)
T ss_dssp             TCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE--
T ss_pred             CCCEEECcCC-cCCCcCHHHhhccccccccccccc-cccccc-ccccccccccccccccccc-ccccccccccccccc--
Confidence            4555555555 344444 33555555666666555 334443 2345555666666555532 334445555555555  


Q ss_pred             cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH
Q 041391          495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE  574 (704)
Q Consensus       495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~  574 (704)
                          ++++|.+..........+.+++.|++++|.+....+   ..+..+++|+.|++++|.+...               
T Consensus       106 ----~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~---~~~~~l~~l~~l~l~~N~l~~~---------------  163 (266)
T d1p9ag_         106 ----DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---GLLTPTPKLEKLSLANNNLTEL---------------  163 (266)
T ss_dssp             ----ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCSCC---------------
T ss_pred             ----cccccccceeeccccccccccccccccccccceecc---ccccccccchhccccccccccc---------------
Confidence                355554444333222255556666665555443222   2345556666666666654321               


Q ss_pred             hhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCC
Q 041391          575 DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQL  628 (704)
Q Consensus       575 ~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l  628 (704)
                                .+..+..+ ++|++|+|++|.+..+|..+..+ +|+.|+|++|++
T Consensus       164 ----------~~~~~~~l-~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         164 ----------PAGLLNGL-ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             ----------CTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ----------Cccccccc-cccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence                      11223333 46777777777777777666666 777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=152.81  Aligned_cols=196  Identities=19%  Similarity=0.162  Sum_probs=154.8

Q ss_pred             cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      .+...+...+.+++ .++.+|..+.  ++|++|+|++|. +..+| ..|.++++|++|+|++|.+. .+|. ++.+++|+
T Consensus         7 ~~~~~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC
T ss_pred             cccCCCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCc-CCCcCHHHhhcccccccccccccccc-cccc-cccccccc
Confidence            34555666788875 5778887664  589999999984 55565 56899999999999999854 5664 67899999


Q ss_pred             eecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccc
Q 041391          491 VLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHN  570 (704)
Q Consensus       491 ~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  570 (704)
                      +|      ++++|.+......+. .+++|+.|++++|.+.....   ..+..+.+++.|.+++|.+..            
T Consensus        81 ~L------~Ls~N~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~---~~~~~l~~l~~L~l~~n~l~~------------  138 (266)
T d1p9ag_          81 TL------DLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELKT------------  138 (266)
T ss_dssp             EE------ECCSSCCSSCCCCTT-TCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCCC------------
T ss_pred             cc------ccccccccccccccc-cccccccccccccccceeec---cccccccccccccccccccce------------
Confidence            99      699999887777777 99999999999998764333   456788999999999888542            


Q ss_pred             hhhHhhHhhhcCCCCCCc-ccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEec
Q 041391          571 KKQEDEAETQGKGGLDGT-FGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL  647 (704)
Q Consensus       571 ~~l~~~~~~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L  647 (704)
                                    ++.. +..+ ++|+.|++++|.+..+|.. +..+ +|++|+|++|+++.+|...+. +++|+.|.|
T Consensus       139 --------------l~~~~~~~l-~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~-~~~L~~L~L  202 (266)
T d1p9ag_         139 --------------LPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFL  202 (266)
T ss_dssp             --------------CCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEEC
T ss_pred             --------------ecccccccc-ccchhcccccccccccCccccccccccceeecccCCCcccChhHCC-CCCCCEEEe
Confidence                          2222 2333 5899999999999888754 5556 999999999999999987664 789999999


Q ss_pred             CCCc
Q 041391          648 RYLN  651 (704)
Q Consensus       648 ~~l~  651 (704)
                      .+++
T Consensus       203 ~~Np  206 (266)
T d1p9ag_         203 HGNP  206 (266)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            8765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.6e-14  Score=153.05  Aligned_cols=263  Identities=19%  Similarity=0.207  Sum_probs=156.1

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      .+.+|++|+++++.++.          + ..+..+++|++|+|++| .++.+|. +++|++|++|++++|. +..++ .+
T Consensus        42 ~l~~l~~L~l~~~~I~~----------l-~gl~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~-~l  106 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS----------I-DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PL  106 (384)
T ss_dssp             HHTTCCEEECCSSCCCC----------C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred             HhCCCCEEECCCCCCCC----------c-cccccCCCCCEEeCcCC-cCCCCcc-ccCCcccccccccccc-ccccc-cc
Confidence            45689999999997763          2 35788999999999998 5888886 9999999999999985 44554 48


Q ss_pred             cccCCCcEEEccCcccccccCcc---------------------------------------------------------
Q 041391          460 DSLKKLTYLDISECYLIEYMPKE---------------------------------------------------------  482 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~---------------------------------------------------------  482 (704)
                      +++++|+.|+++++......+..                                                         
T Consensus       107 ~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         107 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            99999999999887643211110                                                         


Q ss_pred             ------CCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391          483 ------LSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       483 ------i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l  556 (704)
                            ...+++++.+      .+++|.+.... ... .+++|+.|++++|.+...     ..+..+++|+.|++++|.+
T Consensus       187 ~~~~~~~~~l~~~~~l------~l~~n~i~~~~-~~~-~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l  253 (384)
T d2omza2         187 VSDISVLAKLTNLESL------IATNNQISDIT-PLG-ILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQI  253 (384)
T ss_dssp             CCCCGGGGGCTTCSEE------ECCSSCCCCCG-GGG-GCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCC
T ss_pred             ccccccccccccccee------eccCCccCCCC-ccc-ccCCCCEEECCCCCCCCc-----chhhcccccchhccccCcc
Confidence                  1111222222      23333333222 223 445566666666554421     2355566666666666654


Q ss_pred             CCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCc
Q 041391          557 YSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDT  635 (704)
Q Consensus       557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~  635 (704)
                      ....+  ......+..+. +. ......++ .+..+ ..++.+.+..|.+..++. +..+ +++.|++++|++..++.  
T Consensus       254 ~~~~~--~~~~~~L~~L~-l~-~~~l~~~~-~~~~~-~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~--  324 (384)
T d2omza2         254 SNLAP--LSGLTKLTELK-LG-ANQISNIS-PLAGL-TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--  324 (384)
T ss_dssp             CCCGG--GTTCTTCSEEE-CC-SSCCCCCG-GGTTC-TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--
T ss_pred             CCCCc--ccccccCCEee-cc-CcccCCCC-ccccc-cccccccccccccccccc-cchhcccCeEECCCCCCCCCcc--
Confidence            32111  00000000000 00 00111111 12222 245555555555544432 2333 88999999998877754  


Q ss_pred             cCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391          636 HKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC  683 (704)
Q Consensus       636 ~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~  683 (704)
                      ...+++|+.|+|+++..-.+.  .+ ..+|+|++|++.+| +++.+|.
T Consensus       325 l~~l~~L~~L~L~~n~l~~l~--~l-~~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDVS--SL-ANLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GG-GGCTTCCEEECCSS-CCCBCGG
T ss_pred             cccCCCCCEEECCCCCCCCCh--hH-cCCCCCCEEECCCC-cCCCChh
Confidence            456899999999998532222  23 46899999999887 6777763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.4e-15  Score=151.66  Aligned_cols=202  Identities=22%  Similarity=0.184  Sum_probs=117.9

Q ss_pred             CCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC-Cccc
Q 041391          382 KKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-PKGL  459 (704)
Q Consensus       382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-P~~i  459 (704)
                      +.+++|+|++|.++.          +| ..|.++++|++|++++|......+..+..+..++.++...+..+..+ |..+
T Consensus        32 ~~~~~L~Ls~N~i~~----------i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          32 AASQRIFLHGNRISH----------VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             TTCSEEECTTSCCCE----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCCCEEECcCCcCCC----------CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            456777777776653          23 34677777777777776433333344556667777766555455555 4446


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      .++++|++|++++|.+....+..+..+.+|+.+      ++++|.+....+.....+++|+.|++++|.+....+   .+
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l------~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~---~~  172 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RA  172 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TT
T ss_pred             cccccCCEEecCCcccccccccccchhcccchh------hhccccccccChhHhccccchhhcccccCcccccch---hh
Confidence            677777777777776544444445666667776      466666665544333256667777777666543222   34


Q ss_pred             hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCc-ccCCCC-C
Q 041391          540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWLSGL-N  617 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l-~  617 (704)
                      +.++++|+.|.++.|.+..                         ..|..+..+ ++|++|++++|.+..+| .++..+ +
T Consensus       173 f~~l~~L~~l~l~~N~l~~-------------------------i~~~~f~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAH-------------------------VHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCE-------------------------ECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hccccccchhhhhhccccc-------------------------cChhHhhhh-hhcccccccccccccccccccccccc
Confidence            5666666666666665321                         113334444 36666666666665554 344444 6


Q ss_pred             eeEEEEEcCCC
Q 041391          618 LRKLYIRGGQL  628 (704)
Q Consensus       618 L~~L~Ls~n~l  628 (704)
                      |++|+|++|++
T Consensus       227 L~~L~l~~N~l  237 (284)
T d1ozna_         227 LQYLRLNDNPW  237 (284)
T ss_dssp             CCEEECCSSCE
T ss_pred             cCEEEecCCCC
Confidence            66666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.6e-15  Score=150.82  Aligned_cols=208  Identities=21%  Similarity=0.206  Sum_probs=153.5

Q ss_pred             hhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCccccccc-CccC
Q 041391          406 KFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYM-PKEL  483 (704)
Q Consensus       406 ~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l-P~~i  483 (704)
                      .+|..+.  ..+++|+|++| .++.+|. .|.++++|++|++++|......+..+..+..++++....+.....+ |..+
T Consensus        25 ~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          25 AVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             SCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3454443  56789999997 4667774 5888999999999987555555555677888888887655444444 5568


Q ss_pred             CCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCc
Q 041391          484 SSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ  563 (704)
Q Consensus       484 ~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~  563 (704)
                      +++++|++|      +++.|.+..........+.+|+.+++++|.+....+   ..+..+++|+.|++++|.+...    
T Consensus       102 ~~l~~L~~L------~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~---~~f~~~~~L~~L~l~~N~l~~l----  168 (284)
T d1ozna_         102 HGLGRLHTL------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRISSV----  168 (284)
T ss_dssp             TTCTTCCEE------ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCEE----
T ss_pred             cccccCCEE------ecCCcccccccccccchhcccchhhhccccccccCh---hHhccccchhhcccccCccccc----
Confidence            889999999      588887765554443378889999999998865433   4577888999999998885321    


Q ss_pred             ccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCC
Q 041391          564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYST  641 (704)
Q Consensus       564 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~  641 (704)
                                           .+..+..+ ++|+.|++++|.+..+ |.++..+ +|++|++++|.+..++...+..+++
T Consensus       169 ---------------------~~~~f~~l-~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         169 ---------------------PERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             ---------------------CTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             ---------------------chhhhccc-cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccc
Confidence                                 12334444 5899999998888665 5777777 9999999999998888777777889


Q ss_pred             cCEEecCCCc
Q 041391          642 VKVLRLRYLN  651 (704)
Q Consensus       642 L~~L~L~~l~  651 (704)
                      |+.|+|++.+
T Consensus       227 L~~L~l~~N~  236 (284)
T d1ozna_         227 LQYLRLNDNP  236 (284)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEecCCC
Confidence            9999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=8.2e-14  Score=137.13  Aligned_cols=186  Identities=23%  Similarity=0.283  Sum_probs=86.1

Q ss_pred             CCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCccee
Q 041391          413 NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL  492 (704)
Q Consensus       413 ~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L  492 (704)
                      .+.+|++|++.+| .++.++. +..+++|++|++++|.. ..++ .+.++++|++|++++|.+. .++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~ls~n~i-~~~~-~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKDNQI-TDLA-PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCC-CCCG-GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCC-CCCcchh-HhcCCCCcEeecCCcee-eccc-ccccccccccccccccccc-ccc-ccccccccccc
Confidence            3445555555554 3444432 55555555555555432 2222 2455555555555555432 222 24455555555


Q ss_pred             cccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchh
Q 041391          493 KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKK  572 (704)
Q Consensus       493 ~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  572 (704)
                            .++++.... +..+. ..+.+..+.++.+.+....     .+.++++|+.|.+++|.+..              
T Consensus       113 ------~l~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~--------------  165 (227)
T d1h6ua2         113 ------DLTSTQITD-VTPLA-GLSNLQVLYLDLNQITNIS-----PLAGLTNLQYLSIGNAQVSD--------------  165 (227)
T ss_dssp             ------ECTTSCCCC-CGGGT-TCTTCCEEECCSSCCCCCG-----GGGGCTTCCEEECCSSCCCC--------------
T ss_pred             ------ccccccccc-cchhc-cccchhhhhchhhhhchhh-----hhcccccccccccccccccc--------------
Confidence                  233333221 22233 4455555555554443211     24445555666555554321              


Q ss_pred             hHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391          573 QEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR  648 (704)
Q Consensus       573 l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~  648 (704)
                                  . ..+..+ ++|+.|+|++|.+..+|. +..+ +|++|+|++|+++.++.  ...+++|+.|+|+
T Consensus       166 ------------~-~~l~~l-~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 ------------L-TPLANL-SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             ------------C-GGGTTC-TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             ------------c-hhhccc-ccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence                        0 112233 256666666665555543 3344 66666666666555543  2335555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.5e-13  Score=132.47  Aligned_cols=189  Identities=20%  Similarity=0.223  Sum_probs=142.5

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      +..+.+|+.|++.+|.++          .+ +.+..+++|++|++++|. +..++. +.++++|++|++++| ....++ 
T Consensus        37 ~~~l~~L~~L~l~~~~i~----------~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-  101 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT----------TI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVS-  101 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC----------CC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCG-
T ss_pred             HHHcCCcCEEECCCCCCC----------cc-hhHhcCCCCcEeecCCce-eecccc-ccccccccccccccc-cccccc-
Confidence            455778999999999775          33 347889999999999984 666655 899999999999987 445564 


Q ss_pred             cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391          458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS  537 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~  537 (704)
                      .+..+++|+.|++++|.....  ..+...+.+..+      .++.+.+.. ...+. .+++|+.|++++|.+...     
T Consensus       102 ~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l------~~~~~~~~~-~~~~~-~~~~L~~L~l~~n~~~~~-----  166 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVL------YLDLNQITN-ISPLA-GLTNLQYLSIGNAQVSDL-----  166 (227)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEE------ECCSSCCCC-CGGGG-GCTTCCEEECCSSCCCCC-----
T ss_pred             ccccccccccccccccccccc--chhccccchhhh------hchhhhhch-hhhhc-cccccccccccccccccc-----
Confidence            688899999999998875432  235567777777      355555443 33456 788999999999887543     


Q ss_pred             HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-
Q 041391          538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-  616 (704)
Q Consensus       538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-  616 (704)
                      ..+.++++|+.|++++|.+..                          ++ .+..++ +|++|+|++|.++.+|. +..+ 
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~--------------------------l~-~l~~l~-~L~~L~Ls~N~lt~i~~-l~~l~  217 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISD--------------------------IS-PLASLP-NLIEVHLKNNQISDVSP-LANTS  217 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC--------------------------CG-GGGGCT-TCCEEECTTSCCCBCGG-GTTCT
T ss_pred             hhhcccccceecccCCCccCC--------------------------Ch-hhcCCC-CCCEEECcCCcCCCCcc-cccCC
Confidence            237889999999999988532                          22 244554 89999999999998875 6666 


Q ss_pred             CeeEEEEEc
Q 041391          617 NLRKLYIRG  625 (704)
Q Consensus       617 ~L~~L~Ls~  625 (704)
                      +|+.|+|++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=1.1e-12  Score=136.73  Aligned_cols=257  Identities=17%  Similarity=0.117  Sum_probs=136.4

Q ss_pred             CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391          381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD  460 (704)
Q Consensus       381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~  460 (704)
                      .++|++|++++|.++          ++|..   +.+|+.|++++| .+..++. +  .+.|++|++++| .+..+|. ++
T Consensus        57 ~~~L~~L~Ls~N~l~----------~lp~~---~~~L~~L~l~~n-~l~~l~~-l--p~~L~~L~L~~n-~l~~lp~-~~  117 (353)
T d1jl5a_          57 PPHLESLVASCNSLT----------ELPEL---PQSLKSLLVDNN-NLKALSD-L--PPLLEYLGVSNN-QLEKLPE-LQ  117 (353)
T ss_dssp             CTTCSEEECCSSCCS----------SCCCC---CTTCCEEECCSS-CCSCCCS-C--CTTCCEEECCSS-CCSSCCC-CT
T ss_pred             CCCCCEEECCCCCCc----------ccccc---hhhhhhhhhhhc-ccchhhh-h--cccccccccccc-ccccccc-hh
Confidence            467899999998775          34543   357888888886 4555553 2  146889999987 5667774 67


Q ss_pred             ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchh------
Q 041391          461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIE------  534 (704)
Q Consensus       461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~------  534 (704)
                      .+++|++|++++|.+. ..|..+..+..|...         .+.. .....+. .++.++.|.+..|.......      
T Consensus       118 ~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~---------~~~~-~~~~~l~-~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAG---------NNQL-EELPELQ-NLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             TCTTCCEEECCSSCCS-CCCCCCTTCCEEECC---------SSCC-SSCCCCT-TCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             hhccceeecccccccc-ccccccccccchhhc---------cccc-ccccccc-ccccceeccccccccccccccccccc
Confidence            8889999999888643 333322222222111         1110 0111222 34444444444433211000      


Q ss_pred             ---------hHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC----------------Ccc
Q 041391          535 ---------KLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD----------------GTF  589 (704)
Q Consensus       535 ---------~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~----------------~~~  589 (704)
                               .....+..++.|+.++++.|..... +............    . ......+                ..+
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVR----D-NYLTDLPELPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECC----S-SCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccc----c-cccccccccccccccccccccccccc
Confidence                     0001234556677777766653321 1110000000000    0 0000000                011


Q ss_pred             cccccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccE
Q 041391          590 GQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEY  669 (704)
Q Consensus       590 ~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~  669 (704)
                      ..++......++..+.+..++..+.  +|++|+|++|++..+|.    .+++|+.|+|+++. +.    .+...+++|++
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~-L~----~l~~~~~~L~~  328 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLCDLPP--SLEELNVSNNKLIELPA----LPPRLERLIASFNH-LA----EVPELPQNLKQ  328 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSC-CS----CCCCCCTTCCE
T ss_pred             ccccchhcccccccCccccccccCC--CCCEEECCCCccCcccc----ccCCCCEEECCCCc-CC----ccccccCCCCE
Confidence            1122233333333333333322111  89999999999988874    37899999998764 33    23445678999


Q ss_pred             EeeecCCCCCCCCCCCC
Q 041391          670 LEKFNCPMISFFPCDAN  686 (704)
Q Consensus       670 L~i~~C~~L~~lP~~~~  686 (704)
                      |++++|+ |+++|..+.
T Consensus       329 L~L~~N~-L~~lp~~~~  344 (353)
T d1jl5a_         329 LHVEYNP-LREFPDIPE  344 (353)
T ss_dssp             EECCSSC-CSSCCCCCT
T ss_pred             EECcCCc-CCCCCcccc
Confidence            9999986 899987543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=6e-13  Score=129.26  Aligned_cols=35  Identities=31%  Similarity=0.335  Sum_probs=13.6

Q ss_pred             CCcccceeeeeccCCCCCCchhhhccccCcEEeeecc
Q 041391          413 NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC  449 (704)
Q Consensus       413 ~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c  449 (704)
                      .+++|++|+|++| .++.++. ++++++|++|++++|
T Consensus        66 ~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          66 YLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN  100 (210)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             hCCCCCEEeCCCc-cccCccc-cccCccccccccccc
Confidence            3444444444443 2333332 333444444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.5e-13  Score=131.62  Aligned_cols=87  Identities=15%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             ccceeEEEEEcCCCCCCcccCCCC-CeeEE-EEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEE
Q 041391          593 DRLLEKLDLHCFPLESLPNWLSGL-NLRKL-YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYL  670 (704)
Q Consensus       593 p~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L-~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L  670 (704)
                      +..++.|++++|.+..++...... ++..+ .+++|.++.+|...+..+++|+.|+|+++..-.+..    ..|.+|..|
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L  227 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKL  227 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS----SSCTTCCEE
T ss_pred             cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH----HHHcCCccc
Confidence            345666777666666665554444 44444 345566666666666666777777776654221111    234555555


Q ss_pred             eeecCCCCCCCCC
Q 041391          671 EKFNCPMISFFPC  683 (704)
Q Consensus       671 ~i~~C~~L~~lP~  683 (704)
                      ...++.+|+.+|.
T Consensus       228 ~~l~~~~l~~lp~  240 (242)
T d1xwdc1         228 RARSTYNLKKLPT  240 (242)
T ss_dssp             ESSSEESSSCSCC
T ss_pred             ccCcCCCCCcCCC
Confidence            5555555566653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=7.3e-13  Score=128.68  Aligned_cols=163  Identities=23%  Similarity=0.286  Sum_probs=126.7

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      .++.+......+..+.  .+..+++|++|++++|.++.          ++ .++.+++|++|++++| .++.+|. ++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~----------l~-~~~~l~~L~~L~l~~n-~i~~l~~-l~~l  111 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD----------IK-PLANLKNLGWLFLDEN-KVKDLSS-LKDL  111 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC----------CG-GGTTCTTCCEEECCSS-CCCCGGG-GTTC
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC----------cc-ccccCccccccccccc-ccccccc-cccc
Confidence            4555655555555443  36789999999999998763          23 3678999999999998 5778885 9999


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE  518 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~  518 (704)
                      ++|+.|++++|.. ..+ ..+..+++|+.+++++|.+..  +..+..+++|+++      ++++|.+.. ++.+. .+++
T Consensus       112 ~~L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l------~l~~n~l~~-i~~l~-~l~~  179 (210)
T d1h6ta2         112 KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL------SLEDNQISD-IVPLA-GLTK  179 (210)
T ss_dssp             TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE------ECCSSCCCC-CGGGT-TCTT
T ss_pred             ccccccccccccc-ccc-ccccccccccccccccccccc--ccccccccccccc------ccccccccc-ccccc-CCCC
Confidence            9999999999843 444 468899999999999998543  3346788899999      588888765 44577 8999


Q ss_pred             CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEe
Q 041391          519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW  553 (704)
Q Consensus       519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~  553 (704)
                      |+.|++++|.+.. ++    .+.++++|+.|+|++
T Consensus       180 L~~L~Ls~N~i~~-l~----~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHISD-LR----ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCB-CG----GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCCC-Ch----hhcCCCCCCEEEccC
Confidence            9999999998753 32    478889999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-13  Score=134.82  Aligned_cols=56  Identities=23%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             ceeEE-EEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCC
Q 041391          595 LLEKL-DLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYL  650 (704)
Q Consensus       595 ~L~~L-~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l  650 (704)
                      ++.++ .+++|.++.+|.+. ..+ +|++|+|++|+++.+|...+..++.|+.|++.++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            45554 45677888998764 555 9999999999999998876665665655555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=6e-13  Score=128.12  Aligned_cols=161  Identities=19%  Similarity=0.303  Sum_probs=80.0

Q ss_pred             ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391          437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL  516 (704)
Q Consensus       437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L  516 (704)
                      .+.+|++|++++| .+..++ ++..+++|++|++++|.+.. ++. ++++++|++|      +++.|.+.. ++.+. .+
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L------~l~~n~~~~-~~~l~-~l  105 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDI------LMNNNQIAD-ITPLA-NL  105 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE------ECCSSCCCC-CGGGT-TC
T ss_pred             HhcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccccccC-ccc-ccCCcccccc------ccccccccc-ccccc-cc
Confidence            3445555555554 223332 34455555555555554332 222 4455555555      244444322 22344 55


Q ss_pred             CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391          517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL  596 (704)
Q Consensus       517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L  596 (704)
                      ++|+.|++++|.....     ..+..+++|+.|++++|.+..                          ++ .+..+ ++|
T Consensus       106 ~~L~~L~l~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~--------------------------~~-~l~~~-~~L  152 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI-----DPLKNLTNLNRLELSSNTISD--------------------------IS-ALSGL-TSL  152 (199)
T ss_dssp             TTCSEEECCSSCCCCC-----GGGTTCTTCSEEECCSSCCCC--------------------------CG-GGTTC-TTC
T ss_pred             cccccccccccccccc-----cccchhhhhHHhhhhhhhhcc--------------------------cc-ccccc-ccc
Confidence            5556666555544321     124556666666666555321                          11 12223 366


Q ss_pred             eEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEE
Q 041391          597 EKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL  645 (704)
Q Consensus       597 ~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L  645 (704)
                      +.|++.+|.+..++. +..+ +|++|+|++|+++.++.  ...+++|+.|
T Consensus       153 ~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         153 QQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             cccccccccccCCcc-ccCCCCCCEEECCCCCCCCCcc--ccCCCCCCcC
Confidence            677777666666653 4445 77777777777666542  2335555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=3.7e-12  Score=122.44  Aligned_cols=148  Identities=19%  Similarity=0.275  Sum_probs=103.4

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL  459 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i  459 (704)
                      .+.+|+.|+++++.++.+           ..+..+++|++|+|++| .+..++. ++++++|++|++++| ....+| .+
T Consensus        38 ~l~~l~~L~l~~~~i~~l-----------~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l  102 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-----------DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADIT-PL  102 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-----------TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GG
T ss_pred             HhcCCCEEECCCCCCCCc-----------cccccCCCcCcCccccc-cccCccc-ccCCccccccccccc-cccccc-cc
Confidence            456777888888866532           23667788888888887 4566665 788888888888876 344454 47


Q ss_pred             cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391          460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES  539 (704)
Q Consensus       460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~  539 (704)
                      ..+++|++|++++|.... + ..+..+++|+.|      ++++|.+. .++.+. .+++|+.|++.+|.+...     ..
T Consensus       103 ~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L------~l~~n~l~-~~~~l~-~~~~L~~L~l~~n~l~~l-----~~  167 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRL------ELSSNTIS-DISALS-GLTSLQQLNFSSNQVTDL-----KP  167 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEE------ECCSSCCC-CCGGGT-TCTTCSEEECCSSCCCCC-----GG
T ss_pred             cccccccccccccccccc-c-cccchhhhhHHh------hhhhhhhc-cccccc-ccccccccccccccccCC-----cc
Confidence            778888888888776543 2 236677888888      47777654 345566 778888888888876542     23


Q ss_pred             hccCCCccEEEEEecCCC
Q 041391          540 LEKFKNLLKLKIAWGAGY  557 (704)
Q Consensus       540 L~~l~~L~~L~Ls~n~l~  557 (704)
                      +.++++|+.|++++|.+.
T Consensus       168 l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCCCC
Confidence            677888888888887753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.26  E-value=8.6e-11  Score=121.88  Aligned_cols=270  Identities=17%  Similarity=0.127  Sum_probs=154.0

Q ss_pred             eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391          359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL  438 (704)
Q Consensus       359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L  438 (704)
                      +++.+....+.+..++    ..+.+|+.|++.+|.++.+.       .+|      +.|++|++++| .+..+|. ++.+
T Consensus        59 ~L~~L~Ls~N~l~~lp----~~~~~L~~L~l~~n~l~~l~-------~lp------~~L~~L~L~~n-~l~~lp~-~~~l  119 (353)
T d1jl5a_          59 HLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALS-------DLP------PLLEYLGVSNN-QLEKLPE-LQNS  119 (353)
T ss_dssp             TCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC-------SCC------TTCCEEECCSS-CCSSCCC-CTTC
T ss_pred             CCCEEECCCCCCcccc----cchhhhhhhhhhhcccchhh-------hhc------ccccccccccc-ccccccc-hhhh
Confidence            4555555555555432    22468999999999776321       222      36999999997 5778886 7889


Q ss_pred             ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccc-------------cCCCCCC
Q 041391          439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT-------------DAKPNDK  505 (704)
Q Consensus       439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~-------------~ls~n~l  505 (704)
                      ++|++|++++|. ....|..   ...+..|.+..+...  .+..++.++.++.|......             ....+..
T Consensus       120 ~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  193 (353)
T d1jl5a_         120 SFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI  193 (353)
T ss_dssp             TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred             ccceeecccccc-ccccccc---cccccchhhcccccc--ccccccccccceeccccccccccccccccccccccccccc
Confidence            999999999874 3444332   234455555444321  12234444444444210000             0011111


Q ss_pred             ccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccc------cccchhhHh----
Q 041391          506 ICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGN------NEHNKKQED----  575 (704)
Q Consensus       506 ~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~------~~~~~~l~~----  575 (704)
                      ...++... .++.|+.+++++|..... +      ....++..+.+..+.+..........      ......+..    
T Consensus       194 ~~~~~~~~-~l~~L~~l~l~~n~~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~  265 (353)
T d1jl5a_         194 LEELPELQ-NLPFLTTIYADNNLLKTL-P------DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN  265 (353)
T ss_dssp             CSSCCCCT-TCTTCCEEECCSSCCSSC-C------SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred             cccccccc-cccccccccccccccccc-c------cccccccccccccccccccccccccccccccccccccccccccch
Confidence            22334455 778899999988765421 1      22345666666665543221110000      000000000    


Q ss_pred             -hHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccc
Q 041391          576 -EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELN  654 (704)
Q Consensus       576 -~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~  654 (704)
                       ...+.....++ .+...+++|++|+|++|.+..+|.++.  +|+.|+|++|+++++|..    +++|+.|+|++++ +.
T Consensus       266 ~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         266 LYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPP--RLERLIASFNHLAEVPEL----PQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             CCEEECCSSCCS-EECCCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCCC----CTTCCEEECCSSC-CS
T ss_pred             hcccccccCccc-cccccCCCCCEEECCCCccCccccccC--CCCEEECCCCcCCccccc----cCCCCEEECcCCc-CC
Confidence             00001111222 223344699999999999999997655  899999999999988753    5689999999886 54


Q ss_pred             cccccccCcCCCccEEeee
Q 041391          655 VNWRELQALFPDLEYLEKF  673 (704)
Q Consensus       655 l~~~~l~~~~p~L~~L~i~  673 (704)
                          .++..+++|+.|.+.
T Consensus       338 ----~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         338 ----EFPDIPESVEDLRMN  352 (353)
T ss_dssp             ----SCCCCCTTCCEEECC
T ss_pred             ----CCCccccccCeeECc
Confidence                233345578888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-12  Score=132.76  Aligned_cols=213  Identities=16%  Similarity=0.092  Sum_probs=127.8

Q ss_pred             hhccccCcEEeeecccCCCc-CCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCC-Ccc-chhh
Q 041391          435 IANLSNLRVLDLRCCYYLTK-LPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPND-KIC-TLED  511 (704)
Q Consensus       435 l~~L~~L~~LdLs~c~~l~~-lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~-l~~-~~~~  511 (704)
                      .....+|++||+++|..... ++..+..+++|++|++++|.+....+..++.+++|++|      +++++. ++. .+..
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L------~Ls~c~~itd~~l~~  115 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL------NLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE------ECTTCBSCCHHHHHH
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCc------cccccccccccccch
Confidence            44556888888888754433 34446778888888888887666666677888888888      466643 221 2334


Q ss_pred             HHhCCCCCcEEEEEeeCCCCchhhHHHHhcc-CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc
Q 041391          512 LGNSLKELRKLSIYVNNNAIPIEKLSESLEK-FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG  590 (704)
Q Consensus       512 l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  590 (704)
                      +...+++|+.|++++|..... ..+...+.. .++|+.|+++++...-          ....            +.....
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~i----------~~~~------------l~~l~~  172 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGYRKNL----------QKSD------------LSTLVR  172 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSCGGGS----------CHHH------------HHHHHH
T ss_pred             hhHHHHhcccccccccccccc-ccchhhhcccccccchhhhccccccc----------cccc------------cccccc
Confidence            444788999999988754321 222233433 4689999887653100          0000            111112


Q ss_pred             ccccceeEEEEEcCC-CC-CCcccCCCC-CeeEEEEEcCC-CCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCC
Q 041391          591 QKDRLLEKLDLHCFP-LE-SLPNWLSGL-NLRKLYIRGGQ-LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPD  666 (704)
Q Consensus       591 ~lp~~L~~L~Ls~~~-l~-~lP~~l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~  666 (704)
                      .+ ++|++|+|++|. ++ ..+..+..+ +|++|+|++|. +..-.......+|+|+.|++.+|-.-. ....+...+|+
T Consensus       173 ~~-~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~-~l~~l~~~lp~  250 (284)
T d2astb2         173 RC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG-TLQLLKEALPH  250 (284)
T ss_dssp             HC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTT-CHHHHHHHSTT
T ss_pred             cc-ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHH-HHHHHHHhCcc
Confidence            33 389999998764 33 233445555 89999999975 322211223457899999998872111 12222245777


Q ss_pred             ccEEeeecCCCCCCCC
Q 041391          667 LEYLEKFNCPMISFFP  682 (704)
Q Consensus       667 L~~L~i~~C~~L~~lP  682 (704)
                      |+   + +|..++.+.
T Consensus       251 L~---i-~~~~ls~~~  262 (284)
T d2astb2         251 LQ---I-NCSHFTTIA  262 (284)
T ss_dssp             SE---E-SCCCSCCTT
T ss_pred             cc---c-cCccCCCCC
Confidence            65   3 677777663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.9e-11  Score=106.71  Aligned_cols=101  Identities=25%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCC
Q 041391          385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKK  464 (704)
Q Consensus       385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~  464 (704)
                      |+|+|++|.++.          ++ .+..+++|++|++++| .++.+|..++.+++|++|++++| .+..+| ++..+++
T Consensus         1 R~L~Ls~n~l~~----------l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTV----------LC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPR   66 (124)
T ss_dssp             SEEECTTSCCSS----------CC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSS
T ss_pred             CEEEcCCCCCCC----------Cc-ccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccc
Confidence            578888887652          22 3677778888888886 46777777888888888888876 455565 4777888


Q ss_pred             CcEEEccCcccccccC--ccCCCCCCcceecccccccCCCCCCc
Q 041391          465 LTYLDISECYLIEYMP--KELSSLSELQVLKGFLVTDAKPNDKI  506 (704)
Q Consensus       465 L~~L~Ls~n~~~~~lP--~~i~~L~~L~~L~~~~~~~ls~n~l~  506 (704)
                      |++|++++|.+. .+|  ..++.+++|++|      ++++|.+.
T Consensus        67 L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L------~l~~N~i~  103 (124)
T d1dcea3          67 LQELLLCNNRLQ-QSAAIQPLVSCPRLVLL------NLQGNSLC  103 (124)
T ss_dssp             CCEEECCSSCCC-SSSTTGGGGGCTTCCEE------ECTTSGGG
T ss_pred             cCeEECCCCccC-CCCCchhhcCCCCCCEE------ECCCCcCC
Confidence            888888887744 233  235566666666      46666544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2.6e-11  Score=106.99  Aligned_cols=120  Identities=23%  Similarity=0.169  Sum_probs=93.9

Q ss_pred             ceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccccc
Q 041391          418 RLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLV  497 (704)
Q Consensus       418 r~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~  497 (704)
                      |+|+|++| .++.+|. +..+.+|++|++++| .+..+|..++.+++|++|++++|.+. .+| +++.+++|++|     
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L-----   70 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQEL-----   70 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEE-----
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhccccccccccccc-ccC-ccccccccCeE-----
Confidence            68999998 5778876 999999999999997 56789989999999999999999865 555 48899999999     


Q ss_pred             ccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEE
Q 041391          498 TDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKL  549 (704)
Q Consensus       498 ~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L  549 (704)
                       ++++|.+....  ..+. .+++|+.|++++|.+.............+++|+.|
T Consensus        71 -~l~~N~i~~~~~~~~l~-~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 -LLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -ECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -ECCCCccCCCCCchhhc-CCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             58999887543  4566 88999999999998753211111234445666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.4e-11  Score=114.17  Aligned_cols=84  Identities=17%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391          378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK  457 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~  457 (704)
                      |.++.+||.|+|++|.++.          ++..+..+++|++|+|++| .+..++. +..+++|++|++++|. +..+|.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~----------i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~~~l~~L~~L~ls~N~-i~~l~~   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV----------IENLGATLDQFDAIDFSDN-EIRKLDG-FPLLRRLKTLLVNNNR-ICRIGE   80 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS----------CCCGGGGTTCCSEEECCSS-CCCEECC-CCCCSSCCEEECCSSC-CCEECS
T ss_pred             ccCcCcCcEEECCCCCCCc----------cCccccccccCCEEECCCC-CCCccCC-cccCcchhhhhccccc-ccCCCc
Confidence            4455556666666665542          2222344556666666665 3445543 5556666666666653 334433


Q ss_pred             c-ccccCCCcEEEccCcc
Q 041391          458 G-LDSLKKLTYLDISECY  474 (704)
Q Consensus       458 ~-i~~L~~L~~L~Ls~n~  474 (704)
                      . +..+++|++|++++|.
T Consensus        81 ~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          81 GLDQALPDLTELILTNNS   98 (162)
T ss_dssp             CHHHHCTTCCEEECCSCC
T ss_pred             cccccccccccceecccc
Confidence            3 3445666666666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=1.4e-11  Score=117.65  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391          411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ  490 (704)
Q Consensus       411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~  490 (704)
                      |..+++|+.|+|++|......+..+..+++|++|+|++|.....-|..|.++++|++|+|++|.+....|..+..+++|+
T Consensus        50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            34444555555544433333333444444555555554422222222344445555555555443332233344444444


Q ss_pred             ee
Q 041391          491 VL  492 (704)
Q Consensus       491 ~L  492 (704)
                      +|
T Consensus       130 ~l  131 (192)
T d1w8aa_         130 SL  131 (192)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3e-11  Score=111.91  Aligned_cols=132  Identities=23%  Similarity=0.208  Sum_probs=103.7

Q ss_pred             hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCcc-CCCCCC
Q 041391          410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLSE  488 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~  488 (704)
                      .+.++..||.|+|++| .+..+|..+..+.+|++|+|++| .+..++ .+..+++|++|++++|.+. .+|.. +..+++
T Consensus        13 ~~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhccccccc-CCCccccccccc
Confidence            4668889999999998 57888876788999999999998 556774 5889999999999999865 45544 567999


Q ss_pred             cceecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEE
Q 041391          489 LQVLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA  552 (704)
Q Consensus       489 L~~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls  552 (704)
                      |++|      ++++|.+...  +..+. .+++|+.|++++|.+......-...+..+++|+.|+-.
T Consensus        89 L~~L------~L~~N~i~~~~~l~~l~-~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTEL------ILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEE------ECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccc------eeccccccccccccccc-cccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999      5999987654  34566 89999999999998754322122457888999998643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=5.6e-11  Score=113.26  Aligned_cols=131  Identities=16%  Similarity=0.117  Sum_probs=94.8

Q ss_pred             ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC-chhhhccccCcEEeeecccCCCcCCcccccc
Q 041391          384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI-PSSIANLSNLRVLDLRCCYYLTKLPKGLDSL  462 (704)
Q Consensus       384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l-P~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L  462 (704)
                      .++++.+++.++          .+|..+.  +++++|+|++|.....+ +..|.++++|++|+|++|......+..+..+
T Consensus        10 ~~~v~Cs~~~L~----------~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_          10 GTTVDCTGRGLK----------EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TTEEECTTSCCS----------SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCEEEEeCCCcC----------ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            356778887765          3455442  57888888887543334 3457888888888888886666667778888


Q ss_pred             CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc
Q 041391          463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP  532 (704)
Q Consensus       463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~  532 (704)
                      ++|++|++++|.+....|..|.++++|++|      ++++|.+....+..+..+++|+.|++++|.+...
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L------~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTL------NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEE------ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccceeeeccccccccCHHHHhCCCccccc------ccCCccccccCHHHhcCCcccccccccccccccc
Confidence            888888888888665555567888888888      5888888777665443777888888887776543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.09  E-value=6e-12  Score=127.46  Aligned_cols=80  Identities=4%  Similarity=-0.045  Sum_probs=61.8

Q ss_pred             hchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH----
Q 041391          149 IRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME----  224 (704)
Q Consensus       149 ~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~----  224 (704)
                      .++|+||+++||...  ..+..++++++||++|+|+|||               +..+|+.++.+ +.+.|..+.+    
T Consensus       188 ~ea~~Lf~~~~~~~~--~~~~~~~~~~~iv~~c~GlPLA---------------l~~ig~~l~~k-~~~~~~~~~~~L~~  249 (277)
T d2a5yb3         188 DECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPAT---------------LMMFFKSCEPK-TFEKMAQLNNKLES  249 (277)
T ss_dssp             HHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHH---------------HHHHHTTCCSS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcc--CchhhHHHHHHHHHHhCCCHHH---------------HHHHHHHhccC-CHHHHHHHHHHHhc
Confidence            467999999999764  3456789999999999999999               66677776544 3334443322    


Q ss_pred             -----HHHHHHHhhhhchhhhHHHHHH
Q 041391          225 -----MIINFRNKFRNLKNESKFCLWC  246 (704)
Q Consensus       225 -----i~~~L~lSYd~L~~~lK~cFLy  246 (704)
                           |..+|++||++||+++|.||-+
T Consensus       250 ~~~~~v~~il~~sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         250 RGLVGVECITPYSYKSLAMALQRCVEV  276 (277)
T ss_dssp             HCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence                 6678999999999999999965

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-11  Score=123.43  Aligned_cols=160  Identities=20%  Similarity=0.169  Sum_probs=100.7

Q ss_pred             CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCc--CCc
Q 041391          380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK--LPK  457 (704)
Q Consensus       380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~--lP~  457 (704)
                      ...+|++|+++++.++        ...++..+..+++|++|+|++|......+..++.+++|++|++++|..++.  +..
T Consensus        44 ~~~~L~~LdLs~~~i~--------~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          44 SPFRVQHMDLSNSVIE--------VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCBCCCEEECTTCEEC--------HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             cCCCCCEEECCCCccC--------HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch
Confidence            4557899999988653        234556678899999999999865445667788899999999999866542  223


Q ss_pred             cccccCCCcEEEccCcccccc--cCccCCC-CCCcceecccccccCCCCC--Cc-cchhhHHhCCCCCcEEEEEeeCCCC
Q 041391          458 GLDSLKKLTYLDISECYLIEY--MPKELSS-LSELQVLKGFLVTDAKPND--KI-CTLEDLGNSLKELRKLSIYVNNNAI  531 (704)
Q Consensus       458 ~i~~L~~L~~L~Ls~n~~~~~--lP~~i~~-L~~L~~L~~~~~~~ls~n~--l~-~~~~~l~~~L~~L~~L~L~~n~~~~  531 (704)
                      -+..+++|++|++++|.....  ++..+.. .++|+.|.      ++++.  +. ..+..+...+++|+.|++++|....
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~------l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN------LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE------CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             hhHHHHhccccccccccccccccchhhhcccccccchhh------hcccccccccccccccccccccccccccccccCCC
Confidence            345688999999998753221  1122222 34667763      44321  11 1233443356777777777654322


Q ss_pred             chhhHHHHhccCCCccEEEEEecC
Q 041391          532 PIEKLSESLEKFKNLLKLKIAWGA  555 (704)
Q Consensus       532 ~~~~l~~~L~~l~~L~~L~Ls~n~  555 (704)
                        .+.+..+.++++|++|+|++|.
T Consensus       190 --d~~~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         190 --NDCFQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             --GGGGGGGGGCTTCCEEECTTCT
T ss_pred             --chhhhhhcccCcCCEEECCCCC
Confidence              1222456667777777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.88  E-value=1.6e-11  Score=117.74  Aligned_cols=133  Identities=25%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             hhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCC
Q 041391          406 KFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSS  485 (704)
Q Consensus       406 ~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~  485 (704)
                      .++.++..+++|++|+|++| .+..++. +.++++|++|+|++| .+..+|.....+++|++|++++|.+. .++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n-~I~~i~~-l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTN-NIEKISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIA-SLS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEE-EESCCCC-HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECC-CHH-HHHH
T ss_pred             hhhhHHhcccccceeECccc-CCCCccc-ccCCccccChhhccc-cccccccccccccccccccccccccc-ccc-cccc
Confidence            44566666777777777776 3555653 667777777777766 34556554455566777777777643 333 3556


Q ss_pred             CCCcceecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhh-------HHHHhccCCCccEEE
Q 041391          486 LSELQVLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEK-------LSESLEKFKNLLKLK  550 (704)
Q Consensus       486 L~~L~~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~-------l~~~L~~l~~L~~L~  550 (704)
                      +++|++|      ++++|.+....  ..+. .+++|+.|++++|.+......       ....+..+++|+.|+
T Consensus       114 l~~L~~L------~L~~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVL------YMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEE------EESEEECCCHHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccc------ccccchhcccccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6667777      46666654432  3455 777777777777754321110       012256778888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.86  E-value=7.2e-11  Score=123.15  Aligned_cols=93  Identities=12%  Similarity=0.096  Sum_probs=60.3

Q ss_pred             hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC-----------chhhhccccCcEEe
Q 041391          377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI-----------PSSIANLSNLRVLD  445 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l-----------P~~l~~L~~L~~Ld  445 (704)
                      .+..+..|+.|+|++|.+....     ...+-..+...++|+.|+++++. ....           ...+...++|+.|+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~-----~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEA-----ARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHH-----HHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHhhCCCCCEEECcCCcCCHHH-----HHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCccccc
Confidence            3566788889999988664211     12345567788889999988763 2221           12244567888888


Q ss_pred             eecccCCCc----CCccccccCCCcEEEccCccc
Q 041391          446 LRCCYYLTK----LPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       446 Ls~c~~l~~----lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      |++|.....    +...+...++|++|++++|.+
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhhcccccchheecccccc
Confidence            888754332    334455677888888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.73  E-value=1.3e-09  Score=104.09  Aligned_cols=130  Identities=18%  Similarity=0.209  Sum_probs=102.8

Q ss_pred             Ccccceeeeecc-CCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCccee
Q 041391          414 MSALRLLSLQGV-YGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL  492 (704)
Q Consensus       414 L~~Lr~L~Ls~n-~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L  492 (704)
                      ...++.+++++. ..+..+|.+++.|.+|++|+|++| .+..++ .+..|++|++|++++|.+ ..+|.....+++|++|
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEEL   98 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEE
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhccccc-cccccccccccccccc
Confidence            344566677663 246778889999999999999998 456775 699999999999999985 4667655556789999


Q ss_pred             cccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391          493 KGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG  556 (704)
Q Consensus       493 ~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l  556 (704)
                            ++++|.+.. ++.+. .+++|+.|++++|++.. ++. ...+..+++|+.|+|++|.+
T Consensus        99 ------~l~~N~i~~-l~~~~-~l~~L~~L~L~~N~i~~-~~~-~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          99 ------WISYNQIAS-LSGIE-KLVNLRVLYMSNNKITN-WGE-IDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ------ECSEEECCC-HHHHH-HHHHSSEEEESEEECCC-HHH-HHHHTTTTTCSEEEECSSHH
T ss_pred             ------ccccccccc-ccccc-ccccccccccccchhcc-ccc-cccccCCCccceeecCCCcc
Confidence                  588888664 56677 89999999999998864 332 25689999999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.9e-10  Score=123.51  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-----Cchhhh-ccccCcEEeeeccc
Q 041391          377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-----IPSSIA-NLSNLRVLDLRCCY  450 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~-~L~~L~~LdLs~c~  450 (704)
                      .+..+++|++|+|++|.++..     ....+...+..+++|++|+|++|. ++.     +...+. ...+|++|+|++|.
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~-----~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~   95 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEA-----RCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC   95 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHH-----HHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred             HHHhCCCCCEEEeCCCCCCHH-----HHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC
Confidence            355677777888888766521     113455666777778888887763 321     111111 12467888888774


Q ss_pred             CCC----cCCccccccCCCcEEEccCccc
Q 041391          451 YLT----KLPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       451 ~l~----~lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      ...    .++..+..+++|++|++++|.+
T Consensus        96 it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          96 LTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             ccccccccccchhhccccccccccccccc
Confidence            322    2345566677788888877753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.67  E-value=1.3e-09  Score=113.33  Aligned_cols=226  Identities=15%  Similarity=0.087  Sum_probs=133.3

Q ss_pred             hhcCCCCCccEEEcCCCCCcccchh-hhccchhhHhccCCcccceeeeeccCCCCC----CchhhhccccCcEEeeeccc
Q 041391          376 KWFSNLKKVKVLHLGRWKNSAKHFV-EVQGSKFLKELKNMSALRLLSLQGVYGIRE----IPSSIANLSNLRVLDLRCCY  450 (704)
Q Consensus       376 ~~f~~l~~Lr~L~L~~n~l~~~~~~-~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~----lP~~l~~L~~L~~LdLs~c~  450 (704)
                      ..+...++|+.|+++++........ ......+...+..+++|+.|+|++|.....    +...+...++|++|++++|.
T Consensus        53 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            3467788999999987754322110 011123456677888999999999853322    34445677899999999874


Q ss_pred             CCCc----CCc---------cccccCCCcEEEccCccccc----ccCccCCCCCCcceecccccccCCCCCCccc-----
Q 041391          451 YLTK----LPK---------GLDSLKKLTYLDISECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICT-----  508 (704)
Q Consensus       451 ~l~~----lP~---------~i~~L~~L~~L~Ls~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~-----  508 (704)
                      ....    +..         .....+.|+.|++++|.+..    .+...+...+.|++|      +++.|.+...     
T Consensus       133 l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L------~L~~n~i~~~g~~~~  206 (344)
T d2ca6a1         133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV------KMVQNGIRPEGIEHL  206 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE------ECCSSCCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc------ccccccccccccccc
Confidence            3211    000         11245678888888876432    222334556778888      4777765432     


Q ss_pred             h-hhHHhCCCCCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC
Q 041391          509 L-EDLGNSLKELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD  586 (704)
Q Consensus       509 ~-~~l~~~L~~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  586 (704)
                      + ..+. .+++|+.|++++|.+... ...+...+..+++|++|+|++|.+....            ...+.         
T Consensus       207 l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g------------~~~l~---------  264 (344)
T d2ca6a1         207 LLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG------------AAAVV---------  264 (344)
T ss_dssp             HHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH------------HHHHH---------
T ss_pred             hhhhhc-chhhhcccccccccccccccccccccccccccchhhhhhcCccCchh------------hHHHH---------
Confidence            1 2234 677888888888876432 2345566778888888888888753200            00000         


Q ss_pred             Cccccc-ccceeEEEEEcCCCCC-----CcccCC-CC-CeeEEEEEcCCCC
Q 041391          587 GTFGQK-DRLLEKLDLHCFPLES-----LPNWLS-GL-NLRKLYIRGGQLR  629 (704)
Q Consensus       587 ~~~~~l-p~~L~~L~Ls~~~l~~-----lP~~l~-~l-~L~~L~Ls~n~l~  629 (704)
                      ..+... ...|++|+|++|.+..     +...+. .. +|+.|+|++|.+.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            001110 1368888888877632     222222 22 6888888887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6e-08  Score=88.49  Aligned_cols=67  Identities=18%  Similarity=0.200  Sum_probs=32.0

Q ss_pred             hHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcc
Q 041391          408 LKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       408 p~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      |..+..+++|++|++++|..++.++ ..|.++++|+.|+|++|.....-|..|..+++|++|+|++|.
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            4444555555555555443344443 234555555555555542222223334555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-07  Score=86.46  Aligned_cols=104  Identities=19%  Similarity=0.051  Sum_probs=56.2

Q ss_pred             ceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCCcceecccc
Q 041391          418 RLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL  496 (704)
Q Consensus       418 r~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~  496 (704)
                      ..++.+++ .....|..+..+++|+.|++++++.+..++. .|..+++|+.|++++|.+...-|..|..+++|++|    
T Consensus        11 ~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L----   85 (156)
T d2ifga3          11 SGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL----   85 (156)
T ss_dssp             SCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE----
T ss_pred             CeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce----
Confidence            34455543 3444555555566666666655444444443 35556666666666665443334445566666666    


Q ss_pred             cccCCCCCCccchhhHHhCCCCCcEEEEEeeCC
Q 041391          497 VTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN  529 (704)
Q Consensus       497 ~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~  529 (704)
                        ++++|++....+... ...+|+.|+|++|.+
T Consensus        86 --~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          86 --NLSFNALESLSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             --ECCSSCCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred             --eccCCCCcccChhhh-ccccccccccCCCcc
Confidence              466666555555444 344566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.9e-09  Score=110.46  Aligned_cols=109  Identities=20%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC-----CCchhhhccccCcEEeeecccCCC----
Q 041391          383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR-----EIPSSIANLSNLRVLDLRCCYYLT----  453 (704)
Q Consensus       383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~-----~lP~~l~~L~~L~~LdLs~c~~l~----  453 (704)
                      +|++||+++++++..        .+..-+..+++|+.|+|++|. ++     .++..+..+++|++|||++|....    
T Consensus         3 ~l~~ld~~~~~i~~~--------~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA--------RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESCCCCHH--------HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCCcCChH--------HHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            689999999988743        233445667899999999995 44     345557788999999999984321    


Q ss_pred             cCCccccc-cCCCcEEEccCcccccc----cCccCCCCCCcceecccccccCCCCCCc
Q 041391          454 KLPKGLDS-LKKLTYLDISECYLIEY----MPKELSSLSELQVLKGFLVTDAKPNDKI  506 (704)
Q Consensus       454 ~lP~~i~~-L~~L~~L~Ls~n~~~~~----lP~~i~~L~~L~~L~~~~~~~ls~n~l~  506 (704)
                      .+...+.. ..+|++|++++|.+...    ++..+..+++|++|      ++++|.+.
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L------~L~~N~i~  125 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL------HLSDNLLG  125 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEE------ECCSSBCH
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccc------ccccccch
Confidence            12222222 34799999999986532    45567888999999      46666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.4e-06  Score=75.05  Aligned_cols=12  Identities=25%  Similarity=0.276  Sum_probs=5.2

Q ss_pred             Ccccceeeeecc
Q 041391          414 MSALRLLSLQGV  425 (704)
Q Consensus       414 L~~Lr~L~Ls~n  425 (704)
                      +++|++|+|++|
T Consensus        64 ~~~L~~L~Ls~N   75 (162)
T d1koha1          64 IPELLSLNLSNN   75 (162)
T ss_dssp             CTTCCCCCCCSS
T ss_pred             CCCCCEeeCCCc
Confidence            344444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=1.7e-05  Score=72.19  Aligned_cols=85  Identities=16%  Similarity=0.117  Sum_probs=59.4

Q ss_pred             hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcC
Q 041391          377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKL  455 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~l  455 (704)
                      .+..+++|++|+|++|+++.+.       .++..+..+++|++|+|++| .+..+++ ...+..+|+.|++++|......
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~-------~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLD-------DMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCS-------GGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCc-------hhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCc
Confidence            3467899999999999987542       34566778899999999998 5777765 2233456888888888554433


Q ss_pred             Cc-------cccccCCCcEEE
Q 041391          456 PK-------GLDSLKKLTYLD  469 (704)
Q Consensus       456 P~-------~i~~L~~L~~L~  469 (704)
                      ..       .+..+++|+.||
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            21       134566777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.21  E-value=0.0017  Score=58.58  Aligned_cols=117  Identities=10%  Similarity=0.172  Sum_probs=61.1

Q ss_pred             cCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCC----cCCccccccCCCcEEEccCcccccccCcc
Q 041391          412 KNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLT----KLPKGLDSLKKLTYLDISECYLIEYMPKE  482 (704)
Q Consensus       412 ~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~  482 (704)
                      .+.++|+.|+|+++..++.     +-..+...++|++|+|++|....    .+...+...+.|++|++++|.+...-...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4567888888886433322     22234555677777777764321    22223344566777777666533210000


Q ss_pred             CCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc----hhhHHHHhccCCCccEEEEEec
Q 041391          483 LSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP----IEKLSESLEKFKNLLKLKIAWG  554 (704)
Q Consensus       483 i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~----~~~l~~~L~~l~~L~~L~Ls~n  554 (704)
                                               ....+. ..+.|+.|++++|.....    ...+...+...+.|+.|+++.+
T Consensus        92 -------------------------l~~aL~-~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 -------------------------LLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             -------------------------HHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             -------------------------HHHHHH-hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                                     011222 345566666665543211    2334556666777777777544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.92  E-value=0.003  Score=56.85  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             cCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCC----CCCchhhhccccCcEEeeecccCC
Q 041391          378 FSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI----REIPSSIANLSNLRVLDLRCCYYL  452 (704)
Q Consensus       378 f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l----~~lP~~l~~L~~L~~LdLs~c~~l  452 (704)
                      ..+.+.|+.|+|+++ .++..     ....+-..+...++|++|+|++|...    ..+...+...+.|++|+|++|...
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~-----~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKE-----RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHH-----HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhCCCCCcEEEeCCCCCCCHH-----HHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            356788999999875 34321     11245567788899999999998432    223344666789999999998543


Q ss_pred             Cc----CCccccccCCCcEEEccCcc
Q 041391          453 TK----LPKGLDSLKKLTYLDISECY  474 (704)
Q Consensus       453 ~~----lP~~i~~L~~L~~L~Ls~n~  474 (704)
                      ..    +-..+..-+.|++|++++|.
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            21    22344555678888888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.66  E-value=0.011  Score=52.87  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=39.0

Q ss_pred             hccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCCc----CCccccccCCCcEEEccCccc
Q 041391          410 ELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLTK----LPKGLDSLKKLTYLDISECYL  475 (704)
Q Consensus       410 ~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~~----lP~~i~~L~~L~~L~Ls~n~~  475 (704)
                      ...+.+.|++|+|+++..++.     +-..+...++|++|+|++|.....    +-..+...+.|+.|++++|.+
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            345678888888887433322     223345667788888887743221    222344556677777766653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.05  E-value=0.016  Score=51.59  Aligned_cols=88  Identities=16%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             hcCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeeccc
Q 041391          377 WFSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCY  450 (704)
Q Consensus       377 ~f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~  450 (704)
                      ...+.+.|+.|+|+++ .++..     ....+-..+...++|+.|+|++|. ++.     +-..+.....|+.|++++|.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~-----~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVP-----TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHH-----HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHH-----HHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            4466788888888863 34321     112355666778888888888873 322     22335566788888888774


Q ss_pred             CCCc----CCccccccCCCcEEEc
Q 041391          451 YLTK----LPKGLDSLKKLTYLDI  470 (704)
Q Consensus       451 ~l~~----lP~~i~~L~~L~~L~L  470 (704)
                      ....    +-..+...++|+.++|
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             ccchhHHHHHHHHHhCccccEEee
Confidence            3321    2233344445554444