Citrus Sinensis ID: 041394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLMH
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHcccHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHccccEEcccccccccEEEccccEEEEEEEEEEEEEccccccccEEEccccccHHccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEccccccEEEEEEEccccccccccccccccEEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEccccccccccccEEEEEccccccEEEEEEEEccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEcccEEEc
Coil and Loop (DISEMBL)
mditnalpVECISHIIslttprdacrlavvspifksaadsdlvwekflpsdykliisnsvsssslitslskkdLYFHLChypifinngtmsFELEKetgkkcymvgardlcigwgstpscwkwtslpesrflEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKfgkstdgfrstQLASAIYVEGindkkrqglfldpsrntpklfhdrrdgwmeIEMGeffnkngdrgtllcslydfdrfgtrhglviqgiefrpkkmlmh
Flexible Loop (DISEMBL)
MDITNALPVECISHIislttprdaCRLAVVSPIfksaadsdlvWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGindkkrqglfldpsrntpklfhdRRDGWMEIEMGEffnkngdrgTLLCSLYDFDRFGTRHglviqgiefrpkkmlmh
Low Complexity Region (SEG)
MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYkliisnsvsssslitslskkDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLMH
Disordered region (IsUnstruct)
****NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEF********
Disordered Region (DISOPRED)
**ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLII******************YFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFL***********DRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKM***
Disordered Region (DISEMBL)
MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLMH
Disordered Region (DISPRO)
***TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLMH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9ZVQ6	272	F-box protein PP2-B10 OS=	yes	no	0.950	0.926	0.437	7e-55
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.943	0.781	0.420	2e-52
Q9ZVR5	310	Putative F-box protein PP	no	no	0.958	0.819	0.423	7e-52
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.939	0.968	0.423	5e-51
Q9FLU7	251	Putative F-box protein PP	no	no	0.924	0.976	0.414	1e-50
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.935	0.813	0.395	2e-48
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.950	0.857	0.405	3e-45
Q9ZVR0	307	Putative F-box protein PP	no	no	0.939	0.811	0.387	8e-44
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.947	0.747	0.350	3e-43
Q9ZVQ9	307	F-box protein PP2-B7 OS=A	no	no	0.898	0.775	0.392	1e-42

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  214 bits (544), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 158/265 (59%), Gaps = 13/265 (4%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++ P +CIS+IIS T PRDAC  A VS  F+S   SD++WEKFLP+DY+ +I  S   SS
Sbjct: 15  DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS 74

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                 KK+LYF LC+ P+  ++   S  LEK +GK+C M+ A +L I WG  P  W+W 
Sbjct: 75  ------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
            +PESRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF++  + +A+
Sbjct: 129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAV 188

Query: 185 YVEGINDKKRQGLFLDP----SRNTPKLFHDRRDGWMEIEMGEFFNKNG--DRGTLLCSL 238
            V G    +R   F +      RN  K    R DGWMEIE+GEFFN  G  D   +  S 
Sbjct: 189 GVVGQEPSRRLICFSEAIRRGRRNVVKP-KQREDGWMEIELGEFFNDGGIMDNDEIEMSA 247

Query: 239 YDFDRFGTRHGLVIQGIEFRPKKML 263
            +  +   + GL+IQGIE RP K+L
Sbjct: 248 LETKQLNRKCGLIIQGIEIRPAKIL 272

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 154/264 (58%), Gaps = 14/264 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           + LP +CIS+IIS T+PRDAC  A VS  F+SA  SD VW+KFLP +Y+ ++S S     
Sbjct: 62  DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR---- 117

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+LYF LCH P+ I +G  SF LEK +GK+C M+ +++L I WGS+P  W+W 
Sbjct: 118 --VFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
           S+PESRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G     +   +
Sbjct: 176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLF-------HDRRDGWMEIEMGEFFNKNGDRGTLLCS 237
            + G    KR   F+ P     +           R DGWME E+GEFFN+      +  S
Sbjct: 236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEE-RCDEIEFS 294

Query: 238 LYDFDRFGTRHGLVIQGIEFRPKK 261
           + +      + GL+IQGIEFRP K
Sbjct: 295 VIEIKSPSWKSGLIIQGIEFRPTK 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 159/269 (59%), Gaps = 15/269 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           + LP +CIS+IIS T+PRDAC  A VS  F+SA +SD VW+KFLPSDY  ++  S   S 
Sbjct: 48  DNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFS- 106

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGA-RDLCIGWGSTPSCWKW 123
                SKK+LYF +C  P+ + +G  SF LEKE GKKC+M+   + + I W STP  W+W
Sbjct: 107 -----SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRW 161

Query: 124 TSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASA 183
            S+PE+RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK            + + 
Sbjct: 162 ISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEAT 221

Query: 184 IYVEGINDKKRQGLFLDPS-----RNTPKLFH--DRRDGWMEIEMGEFFNKNGDRGTLLC 236
           + + G    +R   F+ PS     R T  +     R+DGWME E+G+FFN++G    +  
Sbjct: 222 VGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESG-CDVVDT 280

Query: 237 SLYDFDRFGTRHGLVIQGIEFRPKKMLMH 265
           S+ +      + GL+IQGIEFRP K L +
Sbjct: 281 SILEIKTPYWKRGLIIQGIEFRPTKSLFY 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 147/260 (56%), Gaps = 11/260 (4%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           N LP +CI+ I+SLTTP D CRL+ VS IF+SAA SD VW  FLP+D+    +   + + 
Sbjct: 2   NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPAG 58

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
           L T   +K L+F L   P+ IN   +SF LE+++G KCYM+ AR L I WG     W W 
Sbjct: 59  LPT---RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFR-----STQ 179
           SLP +RF EVAEL+  W+ E+  +I   +LS  T YAAY VFK+  S  GFR     S  
Sbjct: 116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLV 175

Query: 180 LASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLY 239
           LA     + +       L  D      +    RRDGW E+E+G+FF + GD G +  SL 
Sbjct: 176 LADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLK 235

Query: 240 DFDRFGTRHGLVIQGIEFRP 259
           +      + GL++ GIE RP
Sbjct: 236 ETKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/258 (41%), Positives = 153/258 (59%), Gaps = 13/258 (5%)

Query: 7   LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLI 66
           LP ECI+ +IS T+P DACR++ VS + +SAADS+  WE+FLPSDY++ I NS+S     
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSR---- 61

Query: 67  TSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              S K L+   C  P+ I +G  SF +EK +GKKC+M+ AR L I W  +P  W W S+
Sbjct: 62  --FSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query: 127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGK-STDGFRSTQLASAIY 185
           P+SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +  + GF S  L  +  
Sbjct: 120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFR 179

Query: 186 VEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFG 245
                    + +FL            R DGW+EIE+GE++    D   +  S+ +    G
Sbjct: 180 STRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYYVGFDDE-EIEMSVLETREGG 233

Query: 246 TRHGLVIQGIEFRPKKML 263
            + G+++QGIE RPK++L
Sbjct: 234 WKGGIIVQGIEIRPKELL 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 20/268 (7%)

Query: 7   LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLI 66
           LP EC+S I+S T+P+DAC LA VS  F SA  SD+VWEKF+P +Y+ +IS S +     
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRA----F 94

Query: 67  TSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
             LSKK+LYF LC   + I++G  S  +EK   K+C M+ A +L I WG++P  W+W   
Sbjct: 95  KFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query: 127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRS--TQLASAI 184
           P++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +   ++   +
Sbjct: 155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLFHD----------RRDGWMEIEMGEFFNKNG---DR 231
             + + +  R+ +  D + +      D          R+DGWMEI++GEFFN+ G   D 
Sbjct: 215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query: 232 GTLLCSLYDFDRFGTRHGLVIQGIEFRP 259
              + +L    R   R GL+IQGIE RP
Sbjct: 275 EIEMVALEAKQRHWKR-GLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 149/269 (55%), Gaps = 17/269 (6%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++LP  CIS+IIS T+P DAC  A VS IF+SA  SD+VWEKFLP+DY+ +I+ S   S 
Sbjct: 25  DSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS- 83

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCI-GWGSTPSCWKW 123
                SKK+LYF LC+ P+ I +G MS  LEK +GK+C M+ A  + +         + W
Sbjct: 84  -----SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLW 138

Query: 124 TSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASA 183
              PESRF  VA L   + FE N R+ TR+LS RT Y+ Y+VFK   +  GF+   + + 
Sbjct: 139 IPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAV 198

Query: 184 IYVEGINDKKRQGLFLDP-------SRNTPKLFHDRRDGWMEIEMGEFFNKNG--DRGTL 234
           + + G  +  R  +  D         R        R DGWME E+GEF+N+ G      +
Sbjct: 199 VGIVG-EESFRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDEV 257

Query: 235 LCSLYDFDRFGTRHGLVIQGIEFRPKKML 263
             S  +      + GLVI GIE RP K+L
Sbjct: 258 EISTVEGKYAQQKRGLVILGIEIRPAKIL 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  177 bits (448), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 148/266 (55%), Gaps = 17/266 (6%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           + LP +CIS+IIS T+PRD C  A VS  F  A   D +WEKFLPS+Y+ +I      SS
Sbjct: 46  DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS 105

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                 KKDLYF LC+ P+ + +G  SF LE  +GKKC ++ A++L I  G+ P  W+W 
Sbjct: 106 ------KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWI 159

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
            L ES F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G R   +   +
Sbjct: 160 ELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGV 219

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLF--------HDRRDGWMEIEMGEFFNKNGDRG--TL 234
             +G  +  +Q +  D S +  K +          R DGWME E+G+FFN  G  G   +
Sbjct: 220 GFKG-QEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEV 278

Query: 235 LCSLYDFDRFGTRHGLVIQGIEFRPK 260
             S+ D      + G++I+GIEFRPK
Sbjct: 279 EVSIVDVTSPNLKCGVMIEGIEFRPK 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 158/308 (51%), Gaps = 57/308 (18%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           +ALP +CIS +IS T+PRDAC +A VS   KSAA SDLVWE FLPS+Y  ++  S +   
Sbjct: 33  DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANH-- 90

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
               LSKK+++  L    + + NG  SF +EK +GKKCYM+ A +L I WG +P+ WKW 
Sbjct: 91  ----LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTD-GFRSTQLASA 183
           ++PES+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + + 
Sbjct: 147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query: 184 IYVEGINDKKRQGLFLDPSRNT---------------PKLFHDRR--------------- 213
           +   G    K+   F   + ++                + F  RR               
Sbjct: 207 VGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEG 266

Query: 214 ---------------DGWMEIEMGEFFNKN---GDRGT--LLCSLYDFDRFGTRHGLVIQ 253
                          DGW E+E+G+F+  N   GD G+  +  S+ +      + GL+IQ
Sbjct: 267 ERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQ 326

Query: 254 GIEFRPKK 261
           GIE RP++
Sbjct: 327 GIEIRPER 334

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ9|PP2B7_ARATH F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/275 (39%), Positives = 150/275 (54%), Gaps = 37/275 (13%)

Query: 7   LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLI 66
           LP ECIS IIS T+PRDAC  A+VS  F+SA  SD+VWEKF+P +Y+ ++S S   S   
Sbjct: 43  LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQHFS--- 99

Query: 67  TSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
              SKK+L+F LC   + IN       +EK TGK+C M+ A  L +   ST   WKW + 
Sbjct: 100 ---SKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITN 153

Query: 127 PESRFLE-VAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIY 185
           P S +LE V EL+   +FE+  R  TR LS RT Y+ Y+VF       GF    + + + 
Sbjct: 154 PVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVR 213

Query: 186 VEG--INDKKRQGL---------------FLDPSRNTPKLFHDRRDGWMEIEMGEFFNKN 228
           + G  +++  R+ +                ++P R        R DGWMEIE+GEFFN+ 
Sbjct: 214 MVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPER--------REDGWMEIEIGEFFNEG 265

Query: 229 GDRGT--LLCSLYDFDRFGTRHGLVIQGIEFRPKK 261
             R    +  S+ +  +  T+ GL+IQGIE RP K
Sbjct: 266 AFRNNDEIEMSVSETTQRNTKRGLIIQGIEIRPTK 300

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
118485882	267	unknown [Populus trichocarpa]	0.988	0.981	0.541	4e-73
224053426	243	f-box family protein [Populus trichocarp	0.905	0.987	0.522	5e-68
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.973	0.966	0.513	1e-67
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.977	0.966	0.501	5e-65
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.977	0.966	0.501	7e-65
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.973	0.966	0.494	3e-63
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.954	0.913	0.463	8e-59
296088854	287	unnamed protein product [Vitis vinifera]	0.969	0.895	0.464	9e-59
296088859	311	unnamed protein product [Vitis vinifera]	0.954	0.813	0.463	1e-58
296088861	312	unnamed protein product [Vitis vinifera]	0.954	0.810	0.462	2e-57

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/266 (54%), Positives = 188/266 (70%), Gaps = 4/266 (1%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDY-KLIISNS 59
           MD++  LP EC++HIIS T+PRDAC  A+VS  F+SAADSD VW+ FLPSD+ ++I S+ 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 60  VSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPS 119
            SSSS +T+LSKK+LYFHLC+ PI +NNG MSF LEK  GKKCYM+GAR L I WG TP 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 CWKWTSLP-ESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178
            W W  LP +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 QLASAIYVEGINDKKRQGLFLD--PSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLC 236
            +  ++  E    +++  +FLD  P  + P L  +R DGWMEIEMGEFF  N D G+++ 
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVA 240

Query: 237 SLYDFDRFGTRHGLVIQGIEFRPKKM 262
            L + D + T++GL+I+GIEFRPK++
Sbjct: 241 YLREVDNYTTKNGLIIEGIEFRPKEV 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 176/264 (66%), Gaps = 24/264 (9%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDY-KLIISNS 59
           MD++  LP EC++HIIS T+PRDAC  A+VS  F+SAADSD VW+ FLPSD+ ++I S+ 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 60  VSSSSLITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPS 119
            SSSS +T+LSKK+LYFHLC+ PI +NNG MSF LEK  GKKCYM+GAR L I WG TP 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 CWKWTSLP-ESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178
            W W  LP +SRF EVAEL Y W+ +V  RI+ +I S +T YAAYLVFK   ST GF   
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 QLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSL 238
            +  ++  E                        R DGWMEIEMGEFF  N D G+++  L
Sbjct: 181 LVELSVNFE----------------------ESRSDGWMEIEMGEFFYDNEDDGSVVAYL 218

Query: 239 YDFDRFGTRHGLVIQGIEFRPKKM 262
            + D + T++GL+I+GIEFRPK++
Sbjct: 219 REVDNYTTKNGLIIEGIEFRPKEV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 179/267 (67%), Gaps = 9/267 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP ECIS I++ T+P+DACR AV SP F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLITSLS--KKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS+     S  KK LY  L  + +FI +G  SF LEKE+GKKCYM+GARDL I WGS+P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSP 119

Query: 119 SCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKST---DGF 175
           + W W S+P SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFKF +     DGF
Sbjct: 120 AYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGF 179

Query: 176 RSTQLASAIYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGT 233
            +  ++  +Y EG  + +   + + LDP   +P +  +R DGWME+EMGEFFN+ GD G 
Sbjct: 180 GTKPVSLEVYFEGEEVGEDGTKMVLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDDGI 239

Query: 234 LLCSLYDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   DR   + GL+++G+E RPK
Sbjct: 240 IIFHLMQIDRL-RKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 178/267 (66%), Gaps = 8/267 (2%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR AV SP F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SSSSLITSLS--KKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS+     S  KK LYF L  + +FI +G  SF LEKE+GKKCYM+GARDL I WG++P
Sbjct: 60  SSSTSSFLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 SCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGK---STDGF 175
             W W S+P SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 RSTQLASAIYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGT 233
           +   ++  ++ EG  + +  R+ + LDP   +  +  +R DGWME+EMGE FN+ GD GT
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LLCSLYDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   D F ++ GL+++GIE RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 178/267 (66%), Gaps = 8/267 (2%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR AVVSP F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLITSLS--KKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS+     S  KK LY  L  + +FI +G  SF LEKE+GKKCYM+GARDL I WG++P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 SCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGK---STDGF 175
             W W S+P SRF EVAEL   W+ E+  +IE R LS +T YAAY VFK  +   S  GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 RSTQLASAIYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGT 233
           +   ++  ++ EG  + +  R+ + LDP   +  +  +R DGWME+EMGE FN+ GD GT
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LLCSLYDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   D F ++ GL+++GIE RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/267 (49%), Positives = 177/267 (66%), Gaps = 9/267 (3%)

Query: 1   MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSV 60
           MDI N LP EC+S I++ T+P+DACR AVVSP F+SAADSD +W  FLPSDY+ IIS + 
Sbjct: 1   MDI-NQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSSSLITSLS--KKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTP 118
           SSS+     S  KK LY  L  + +FI +G   F LEK +GKKCYM+GARDL I WGS+P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSP 119

Query: 119 SCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKST---DGF 175
             W W S+P SRF EVAEL Y W+ E+  +IE R LS +T YAAY VFK  +       F
Sbjct: 120 EYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVF 179

Query: 176 RSTQLASAIYVEG--INDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGT 233
            +T ++  ++ EG  + + +R+ + LDP   +  +  +R DGWME+EMGEFFN+ GD G+
Sbjct: 180 ETTPVSLEVHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDDGS 239

Query: 234 LLCSLYDFDRFGTRHGLVIQGIEFRPK 260
           ++  L   DR   + GL+++G+E RPK
Sbjct: 240 IIFHLMQIDRL-RKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 168/257 (65%), Gaps = 4/257 (1%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           +ALP +CI+ I++ T+ RDACR++ VSP F SAA+SD +WE FLP+DY+ II  S  SS+
Sbjct: 21  SALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSA 80

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+L+F LC+ P+ I+ G  SF L+KE+GKKCYM+ AR+L I W  TP  W W 
Sbjct: 81  RQDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 140

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
           S P+SRF EVA L   W+F +  ++ T +LS  TNYAAYL+F+     DGF    + S+I
Sbjct: 141 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 200

Query: 185 YVEGINDKKRQGLFLDPSRN-TPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDR 243
            V G  +  ++ ++LDP  + +P     R DGW E+E+GEFFN+  +   L  S+ + + 
Sbjct: 201 GVTG-GETAKKVIYLDPEHDISPN--PTRIDGWYEVELGEFFNEGRESVELEMSIMEVNT 257

Query: 244 FGTRHGLVIQGIEFRPK 260
           F  + GL+I+GIE RPK
Sbjct: 258 FIGKSGLLIEGIEIRPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 125/269 (46%), Positives = 172/269 (63%), Gaps = 12/269 (4%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           ++LP  CI+ +++LT+PRD CR++ V+ +F SAA+SD +WE+FLP+DY+ II+ S  SSS
Sbjct: 21  SSLPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSS 80

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+LYF LC YP+ I+ G  SF LEK +GKKCYM+ +R+L I WG TP  W+WT
Sbjct: 81  WRHFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWT 140

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
           SLPESRF EVA L    +FE+  +I T +LS RTNYAAYLVF  G+S  GF    + S+I
Sbjct: 141 SLPESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRS-HGFEDVPVESSI 199

Query: 185 YVEGINDKKRQGLFLDPSRN----TPKLFHD------RRDGWMEIEMGEFFNKNGDRGTL 234
            + G N+   + ++L   R     T  +  D      R D W EIE+GEFF + G+   L
Sbjct: 200 EIVG-NETTTRVIYLARYRKNEEPTSSIRSDLPYPKKREDSWFEIELGEFFIEGGEDTEL 258

Query: 235 LCSLYDFDRFGTRHGLVIQGIEFRPKKML 263
             +L +      + GL+++GIE RPK  L
Sbjct: 259 EITLMEVKAGHWKDGLIVEGIEIRPKGDL 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088859|emb|CBI38323.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 168/257 (65%), Gaps = 4/257 (1%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
           +ALP +CI+ I++ T+ RDACR++ VSP F SAA+SD +WE FLP+DY+ II  S  SS+
Sbjct: 55  SALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSA 114

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+L+F LC+ P+ I+ G  SF L+KE+GKKCYM+ AR+L I W  TP  W W 
Sbjct: 115 RQDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 174

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
           S P+SRF EVA L   W+F +  ++ T +LS  TNYAAYL+F+     DGF    + S+I
Sbjct: 175 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 234

Query: 185 YVEGINDKKRQGLFLDPSRN-TPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDR 243
            V G  +  ++ ++LDP  + +P     R DGW E+E+GEFFN+  +   L  S+ + + 
Sbjct: 235 GVTG-GETAKKVIYLDPEHDISPN--PTRIDGWYEVELGEFFNEGRESVELEMSIMEVNT 291

Query: 244 FGTRHGLVIQGIEFRPK 260
           F  + GL+I+GIE RPK
Sbjct: 292 FIGKSGLLIEGIEIRPK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/268 (46%), Positives = 161/268 (60%), Gaps = 15/268 (5%)

Query: 5   NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS 64
            +LP+EC++ IIS T+P DA R++VVS   + AADSD VWE FLP D++ II+ +  SS 
Sbjct: 45  TSLPLECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSR 104

Query: 65  LITSLSKKDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                SKK+LY  L   PI I  G  SF +EK +GKKCYM+ AR L I WG TP  WKW 
Sbjct: 105 AEVQ-SKKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWI 163

Query: 125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
           SLP+SRF EVAEL+   +FE+  RI T +L  +TNYAAYLVF     T GF    +  +I
Sbjct: 164 SLPQSRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSI 223

Query: 185 YVEGINDKKRQGLFLDPSRNTPKLF------------HDRRDGWMEIEMGEFFNKNGDRG 232
            + G      Q ++L+PS+   + F              R DGW+EIE+GEFFN+ GD  
Sbjct: 224 GIIG-GRISTQSVYLNPSKTQTRRFPVVPRRGNCQHPKKREDGWLEIELGEFFNEGGDE- 281

Query: 233 TLLCSLYDFDRFGTRHGLVIQGIEFRPK 260
            L  S+ +      + GL+IQGIE RPK
Sbjct: 282 ELEMSVLEVKAGNWKCGLIIQGIEIRPK 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.950	0.926	0.415	1.8e-48
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.939	0.778	0.411	2e-47
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.950	0.812	0.408	6.9e-47
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.939	0.968	0.411	7.9e-46
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.924	0.976	0.391	6.4e-44
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.690	0.544	0.413	5.2e-43
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.935	0.813	0.376	4e-42
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.935	0.807	0.376	1.4e-39
TAIR|locus:2056176	307	PP2-B7 "phloem protein 2-B7" [	0.928	0.801	0.389	4.3e-38
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.769	0.705	0.344	4e-37

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 110/265 (41%), Positives = 150/265 (56%)

Query:     5 NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXX 64
             ++ P +CIS+IIS T PRDAC  A VS  F+S   SD++WEKFLP+DY            
Sbjct:    15 DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS 74

Query:    65 XXXXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +LYF LC+ P+  ++   S  LEK +GK+C M+ A +L I WG  P  W+W 
Sbjct:    75 KK------ELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query:   125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
              +PESRF +VA+L    +FE+  R  TR+LS RT Y+AY+VFK      GF++  + +A+
Sbjct:   129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAV 188

Query:   185 YVEGINDKKRQGLFLDP----SRNTPKLFHDRRDGWMEIEMGEFFNKNG--DRGTLLCSL 238
              V G    +R   F +      RN  K    R DGWMEIE+GEFFN  G  D   +  S 
Sbjct:   189 GVVGQEPSRRLICFSEAIRRGRRNVVKP-KQREDGWMEIELGEFFNDGGIMDNDEIEMSA 247

Query:   239 YDFDRFGTRHGLVIQGIEFRPKKML 263
              +  +   + GL+IQGIE RP K+L
Sbjct:   248 LETKQLNRKCGLIIQGIEIRPAKIL 272

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 109/265 (41%), Positives = 150/265 (56%)

Query:     5 NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXX 64
             + LP +CIS+IIS T+PRDAC  A VS  F+SA  SD VW+KFLP +Y            
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS 121

Query:    65 XXXXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +LYF LCH P+ I +G  SF LEK +GK+C M+ +++L I WGS+P  W+W 
Sbjct:   122 KK------ELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query:   125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAI 184
             S+PESRF ++AEL+   +FE+  +   R+LS  T Y+AY+VFK      G     +   +
Sbjct:   176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query:   185 YVEGINDKKRQGLFLDPS-----RNTPKLFH--DRRDGWMEIEMGEFFNKNGDR-GTLLC 236
              + G    KR   F+ P      R T  +     R DGWME E+GEFFN+  +R   +  
Sbjct:   236 GLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNE--ERCDEIEF 293

Query:   237 SLYDFDRFGTRHGLVIQGIEFRPKK 261
             S+ +      + GL+IQGIEFRP K
Sbjct:   294 SVIEIKSPSWKSGLIIQGIEFRPTK 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 109/267 (40%), Positives = 151/267 (56%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP +CIS+IIS T+PRDAC  A VS  F+SA +SD VW+KFLPSDY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKK 109

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGAR-DLCIGWGSTPSCWKWTS 125
                   +LYF +C  P+ + +G  SF LEKE GKKC+M+  +  + I W STP  W+W S
Sbjct:   110 ------ELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query:   126 LPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIY 185
             +PE+RF EV EL+   +FEV   + T+ LS  T Y+AY+VFK            + + + 
Sbjct:   164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query:   186 VEGINDKKRQGLFLDPS-----RNTPKLFHD--RRDGWMEIEMGEFFNKNGDRGTLLCSL 238
             + G    +R   F+ PS     R T  +     R+DGWME E+G+FFN++G    +  S+
Sbjct:   224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGC-DVVDTSI 282

Query:   239 YDFDRFGTRHGLVIQGIEFRPKKMLMH 265
              +      + GL+IQGIEFRP K L +
Sbjct:   283 LEIKTPYWKRGLIIQGIEFRPTKSLFY 309

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 107/260 (41%), Positives = 140/260 (53%)

Query:     5 NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXX 64
             N LP +CI+ I+SLTTP D CRL+ VS IF+SAA SD VW  FLP+D+            
Sbjct:     2 NNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPT 61

Query:    65 XXXXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                      L+F L   P+ IN   +SF LE+++G KCYM+ AR L I WG     W W 
Sbjct:    62 RK------QLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query:   125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFR-----STQ 179
             SLP +RF EVAEL+  W+ E+  +I   +LS  T YAAY VFK+  S  GFR     S  
Sbjct:   116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFRQPVETSLV 175

Query:   180 LASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLY 239
             LA     + +       L  D      +    RRDGW E+E+G+FF + GD G +  SL 
Sbjct:   176 LADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLK 235

Query:   240 DFDRFGTRHGLVIQGIEFRP 259
             +      + GL++ GIE RP
Sbjct:   236 ETKGPYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 101/258 (39%), Positives = 144/258 (55%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP ECI+ +IS T+P DACR++ VS + +SAADS+  WE+FLPSDY              
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFSNK 65

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                    L+   C  P+ I +G  SF +EK +GKKC+M+ AR L I W  +P  W W S+
Sbjct:    66 ------QLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query:   127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGK-STDGFRSTQLASAIY 185
             P+SRF EVA L+   +FE+  +I T +LS  TNY+AYLVFK  +  + GF S  L  +  
Sbjct:   120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFR 179

Query:   186 VEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFG 245
                      + +FL            R DGW+EIE+GE++    D   +  S+ +    G
Sbjct:   180 STRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYYVGFDDE-EIEMSVLETREGG 233

Query:   246 TRHGLVIQGIEFRPKKML 263
              + G+++QGIE RPK++L
Sbjct:   234 WKGGIIVQGIEIRPKELL 251

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 79/191 (41%), Positives = 111/191 (58%)

Query:     5 NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXX 64
             +ALP +CIS +IS T+PRDAC +A VS   KSAA SDLVWE FLPS+Y            
Sbjct:    33 DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS 92

Query:    65 XXXXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWT 124
                     +++  L    + + NG  SF +EK +GKKCYM+ A +L I WG +P+ WKW 
Sbjct:    93 KK------EIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query:   125 SLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTD-GFRSTQLASA 183
             ++PES+F +VAEL    +FEV  +I   +LS  T+Y+ Y+VFK       GF    + + 
Sbjct:   147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query:   184 I-YVEGINDKK 193
             + +V  +  KK
Sbjct:   207 VGFVGKVATKK 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 101/268 (37%), Positives = 146/268 (54%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP EC+S I+S T+P+DAC LA VS  F SA  SD+VWEKF+P +Y              
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   +LYF LC   + I++G  S  +EK   K+C M+ A +L I WG++P  W+W   
Sbjct:    99 KK----ELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query:   127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYV 186
             P++RF  VAEL+    FE+  RI +R++S +T Y+AY+V+K      GF +  +   + V
Sbjct:   155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query:   187 EG--INDKKRQGLFLDPSRNTPKLFHDR----------RDGWMEIEMGEFFNKNG---DR 231
              G  + +  R+ +  D + +      DR          +DGWMEI++GEFFN+ G   D 
Sbjct:   215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query:   232 GTLLCSLYDFDRFGTRHGLVIQGIEFRP 259
                + +L    R   R GL+IQGIE RP
Sbjct:   275 EIEMVALEAKQRHWKR-GLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 99/263 (37%), Positives = 141/263 (53%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP +CIS+IIS T+PRD C  A VS  F  A   D +WEKFLPS+Y              
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSSKK 107

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   DLYF LC+ P+ + +G  SF LE  +GKKC ++ A++L I  G+ P  W+W  L
Sbjct:   108 ------DLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query:   127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYV 186
              ES F +V EL+    F++   + T+ILS  T+Y+ Y+V+K      G R   +   +  
Sbjct:   162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query:   187 EGINDKKRQGLF---LDPSRNTPK--LFHDRR--DGWMEIEMGEFFNKNGDRG--TLLCS 237
             +G    K+   F    D ++  PK  L   ++  DGWME E+G+FFN  G  G   +  S
Sbjct:   222 KGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVS 281

Query:   238 LYDFDRFGTRHGLVIQGIEFRPK 260
             + D      + G++I+GIEFRPK
Sbjct:   282 IVDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2056176 PP2-B7 "phloem protein 2-B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 104/267 (38%), Positives = 144/267 (53%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP ECIS IIS T+PRDAC  A+VS  F+SA  SD+VWEKF+P +Y              
Sbjct:    43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQHFSSKK 102

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   +L+F LC   + IN       +EK TGK+C M+ A  L +   ST   WKW + 
Sbjct:   103 ------ELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITN 153

Query:   127 PESRFLE-VAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIY 185
             P S +LE V EL+   +FE+  R  TR LS RT Y+ Y+VF       GF    + + + 
Sbjct:   154 PVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVR 213

Query:   186 VEG--INDKKRQGLFLDPSRN----TPK-LFH-DRR-DGWMEIEMGEFFNKNGDRGT--L 234
             + G  +++  R+ +    +      T K L + +RR DGWMEIE+GEFFN+   R    +
Sbjct:   214 MVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFNEGAFRNNDEI 273

Query:   235 LCSLYDFDRFGTRHGLVIQGIEFRPKK 261
               S+ +  +  T+ GL+IQGIE RP K
Sbjct:   274 EMSVSETTQRNTKRGLIIQGIEIRPTK 300

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 73/212 (34%), Positives = 108/212 (50%)

Query:     7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYXXXXXXXXXXXXXX 66
             LP  C++ I+S TTP D    A VS +F+ A DSD VWEKFLP+DY              
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query:    67 XXXXXXDLYFHLCHYPIFINNGTMSFELEKETGKKCYMVGARDLCIGWGSTPSCWKWTSL 126
                   +LY  LC   I I+NG   F++EK +GK  Y++ +RDL I W      W W+  
Sbjct:    63 SSKK--ELYRCLCE-SILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query:   127 PESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYV 186
              +SRF E  +L+   + E+  +I+T  LS  TNY AYL+ K      G       ++I V
Sbjct:   120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKV 179

Query:   187 EGINDKKRQGLFL----DPSRNTPKLFHDRRD 214
              G  +KK +  +L    +  +   ++F+ +R+
Sbjct:   180 -GNGEKKIKSTYLSCLDNKKQQMERVFYGQRE 210

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVQ6	P2B10_ARATH	No assigned EC number	0.4377	0.9509	0.9264	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam14299	154	pfam14299, PP2, Phloem protein 2	2e-53
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-04
pfam00646	48	pfam00646, F-box, F-box domain	5e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  169 bits (431), Expect = 2e-53
 Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 8/162 (4%)

Query: 99  GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRT 158
           GKKCYM+ AR L I WG  P  W+W  LPESRF EVAEL+   + E+  +I TR+LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 159 NYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWME 218
            Y+AYLVFK      G+          V   + +K +            L   R DGWME
Sbjct: 61  TYSAYLVFKLADRAYGWDE--KPVEFSVSVPDGQKSR------QERYVCLPEKRGDGWME 112

Query: 219 IEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPK 260
           IE+GEFFN+ G+ G +  S+ + D    + GL++ GIE RPK
Sbjct: 113 IEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 5  NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47
          + LP E +  I S   PRD  RLA+V   ++  A  D +W + 
Sbjct: 2  SDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 7  LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFL 48
          LP + +  I+S   P+D  RL++VS  ++S  DS  +W+K L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 7  LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47
          LP E +  I+S   P+D  RL  VS  ++S  DS   W K 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.8
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.48
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.41
PF06881	109	Elongin_A: RNA polymerase II transcription factor	95.47
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	88.29
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	85.7
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	84.64

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=2.7e-66  Score=437.91  Aligned_cols=153  Identities=46%  Similarity=0.863  Sum_probs=145.3

Q ss_pred             CceeEEeeccceeeeeCCCCCceeEeecCCcccccceeEeeeeEEEEEEEEeccccCCCCeEEEEEEEEeCcccCCCCcc
Q 041394           99 GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRST  178 (265)
Q Consensus        99 G~kCymLsAR~L~ItWgd~~~YW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~  178 (265)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEEEEcCceee-eeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCceEEEEEEEEEeCCcccccEEEEEEEE
Q 041394          179 QLASAIYVEGINDK-KRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEF  257 (265)
Q Consensus       179 pv~~~v~~~~g~~~-~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~ev~fs~~e~~~~~wK~GLiv~GieI  257 (265)
                      ||+++|++++++.. +.+.+++         |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+||||
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI  151 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI  151 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence            99999999987642 4456666         6689999999999999999889999999999999999999999999999


Q ss_pred             Eec
Q 041394          258 RPK  260 (265)
Q Consensus       258 RPk  260 (265)
                      |||
T Consensus       152 RPK  154 (154)
T PF14299_consen  152 RPK  154 (154)
T ss_pred             ecC
Confidence            998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.80  E-value=5e-09  Score=71.01  Aligned_cols=45  Identities=29%  Similarity=0.562  Sum_probs=40.4

Q ss_pred             ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccC
Q 041394            4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFL   48 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fL   48 (265)
                      +.+||+|++.+|+++++|.|.+++++|||.|+.++.++.+|.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            468999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.48  E-value=7e-08  Score=65.12  Aligned_cols=44  Identities=36%  Similarity=0.613  Sum_probs=39.1

Q ss_pred             ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394            4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF   47 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f   47 (265)
                      +.+||++++.+|++++++.|.++++.||+.|+.+++++.+|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            57899999999999999999999999999999999999999875

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.41  E-value=2.9e-07  Score=59.45  Aligned_cols=40  Identities=40%  Similarity=0.540  Sum_probs=38.6

Q ss_pred             CcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhc
Q 041394            7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEK   46 (265)
Q Consensus         7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~   46 (265)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=95.47  E-value=0.016  Score=46.24  Aligned_cols=73  Identities=19%  Similarity=0.343  Sum_probs=58.8

Q ss_pred             CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394            2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH   80 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~   80 (265)
                      ..++++|.++|.-||...+|....++..-|+-+  +-++|.+|.+|+-.||+.-..... +.   ...|-+++|..+.+
T Consensus         2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~~---~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-PK---EPESWRELYEKLKK   74 (109)
T ss_pred             CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-cc---ccchHHHHHHHHHH
Confidence            568899999999999999999999999998765  667999999999999975222211 11   34588999998874

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.72  E-value=0.031  Score=52.79  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=56.4

Q ss_pred             ccCCcHHHHHHHHhcCC-----hHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCc--cccCCCCHHHHHH
Q 041394            4 TNALPVECISHIISLTT-----PRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSS--SLITSLSKKDLYF   76 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~-----P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~--~~~~~~skKely~   76 (265)
                      +..||++.+-.|+...=     -++.-++|+||+.|+-+|..|.+|..+|=.-+..-+-...+-.  +. -..|-+++|+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sk-y~~SWR~Mfl  185 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSK-YYTSWREMFL  185 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhH-HHhHHHHHHh
Confidence            56899999999887544     5999999999999999999999999988765553222221100  01 1346777876


Q ss_pred             hhccCC-eEecC
Q 041394           77 HLCHYP-IFINN   87 (265)
Q Consensus        77 ~L~~~p-~lld~   87 (265)
                      .   +| |.+||
T Consensus       186 ~---RpRvrFdG  194 (366)
T KOG2997|consen  186 E---RPRVRFDG  194 (366)
T ss_pred             h---Ccceeecc
Confidence            5   33 66665

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.71  E-value=0.16  Score=49.14  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=36.8

Q ss_pred             CCcccCCcHHHHHHHHhcC-ChHHHHHHhhcCHHHHhhhcch
Q 041394            1 MDITNALPVECISHIISLT-TPRDACRLAVVSPIFKSAADSD   41 (265)
Q Consensus         1 ~~~~~~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa~sd   41 (265)
                      |..-.+||+|.+..|..++ +..|..|+++||++||+|+...
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            4556789999999999998 7999999999999999998863

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.29  E-value=0.41  Score=45.58  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=41.0

Q ss_pred             ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhc
Q 041394            4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEK   46 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~   46 (265)
                      +++||++.+..|.|.+--.|.-+++.||+.|...|....+|..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence            5899999999999999999999999999999999999999954

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=85.70  E-value=0.53  Score=47.55  Aligned_cols=50  Identities=26%  Similarity=0.311  Sum_probs=44.9

Q ss_pred             ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccc
Q 041394            4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYK   53 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~   53 (265)
                      +..||-+..-.|+++++|++.+++++||+.|+..++.|.+|.+.+.+...
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            55799999999999999999999999999999999999999877665544

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=84.64  E-value=0.26  Score=46.92  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCccc
Q 041394            3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDY   52 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy   52 (265)
                      .++.+|.+.+..+++++.++++.+.|+||+..+..++-+.+|++++-.++
T Consensus         7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            46789999999999999999999999999999999999999999985544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 5  NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKL---------- 54
            LP++   +I+S  +P D C+L   +  +       ++W  FL  D             
Sbjct: 6  TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLP 65

Query: 55 ---IISNSVSSSSLITSLSKKDLYFHLC 79
             I+   +S  +         +Y   C
Sbjct: 66 DLEILKKPISEVTDGAFFDYMAVYRMCC 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 54/313 (17%), Positives = 89/313 (28%), Gaps = 69/313 (22%)

Query: 2   DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVS 61
              NA  + C   I+ LTT R       +S    +    D       P + K ++   + 
Sbjct: 257 KAWNAFNLSC--KIL-LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 62  SS----------------SLITSLSKKDL----YFHLCHYPIFINNGTMSFE-LEKETGK 100
                             S+I    +  L     +   +          S   LE    +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 101 KCYM----------VGARDLCIGWGSTPS---------CWKWTSLPESRFLEVAELVYFW 141
           K +           +    L + W                K  SL E +  E    +   
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSI 431

Query: 142 FFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIY------VEGINDKKRQ 195
           + E+  ++E     HR+    Y + K    +D      L    Y      ++ I   +R 
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 196 GLFLDPSRNTPKLFHDRRDGWME---IEMGEFFNKNGDRGTLLCSL-----YDFDRFGTR 247
            LF         +F D R  ++E         +N +G     L  L     Y  D     
Sbjct: 491 TLF-------RMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 248 HGLVIQGIEFRPK 260
             LV   ++F PK
Sbjct: 542 ERLVNAILDFLPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.84
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.78
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.18
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.06
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	93.6
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	91.14

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.84  E-value=2.5e-09  Score=73.06  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=40.2

Q ss_pred             cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394            3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF   47 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f   47 (265)
                      .+++||++++.+|+++++|+|.+++++|||.|+.++.++.+|+++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            578999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.78  E-value=3.7e-09  Score=97.18  Aligned_cols=78  Identities=19%  Similarity=0.358  Sum_probs=62.2

Q ss_pred             CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccc---cccccccCCcc----------ccCC
Q 041394            2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYK---LIISNSVSSSS----------LITS   68 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~---~il~~~~~~~~----------~~~~   68 (265)
                      |.|++||.+++.+|+||++|+|+|++++||+.||.+|+++.+|+.||-.|++   +|-..+.|...          ...+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            5789999999999999999999999999999999999999999999987744   44443332210          0014


Q ss_pred             CCHHHHHHhhc
Q 041394           69 LSKKDLYFHLC   79 (265)
Q Consensus        69 ~skKely~~L~   79 (265)
                      ..++.+|.+=|
T Consensus        83 ~~~~~~y~~~~   93 (312)
T 3l2o_B           83 FDYMAVYRMCC   93 (312)
T ss_dssp             CCHHHHHHHHC
T ss_pred             ccHHHHHHhcC
Confidence            56899999987

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.18  E-value=1.1e-06  Score=80.50  Aligned_cols=81  Identities=11%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CcccCCcHHHHHHHHhcCChHHHH-HHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394            2 DITNALPVECISHIISLTTPRDAC-RLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH   80 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~-r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~   80 (265)
                      ..+..||++++..||+++.|++.+ |+++|||.||..++++.+|.+.|...  .+......+.   +..+-|.+|+.--.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~---~~~~Wk~~y~~~~~  123 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADE---ERDHWQQFYFLSKR  123 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCC---CCCChhhhheheec
Confidence            467899999999999999999999 99999999999999999999988765  1221111110   23568999987433


Q ss_pred             CCeEecC
Q 041394           81 YPIFINN   87 (265)
Q Consensus        81 ~p~lld~   87 (265)
                      .-+||.+
T Consensus       124 gRNLL~N  130 (297)
T 2e31_A          124 RRNLLRN  130 (297)
T ss_dssp             CCCCSSC
T ss_pred             ccceeec
Confidence            4466654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.98  E-value=3.7e-06  Score=77.20  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=44.9

Q ss_pred             CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCC
Q 041394            2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLP   49 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP   49 (265)
                      ..++.||++++.+|+++++|+|.|++++||+.|+.+++++.+|.+++-
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            457899999999999999999999999999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.71  E-value=1.1e-05  Score=73.85  Aligned_cols=46  Identities=22%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcc-hhhhhccC
Q 041394            3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADS-DLVWEKFL   48 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-d~vW~~fL   48 (265)
                      -+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35679999999999999999999999999999999988 99999886

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.69  E-value=9.9e-06  Score=74.39  Aligned_cols=49  Identities=18%  Similarity=0.436  Sum_probs=45.0

Q ss_pred             cccCCcHH----HHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcc
Q 041394            3 ITNALPVE----CISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSD   51 (265)
Q Consensus         3 ~~~~Lpe~----ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~d   51 (265)
                      -+..||++    ++.+|+++++|+|.|++++|||.|+.+++++.+|.+++...
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            35679999    99999999999999999999999999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.08  E-value=0.00035  Score=61.93  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394            2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF   47 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f   47 (265)
                      ..+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            3578999999999999999999999999999999999877778653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.50  E-value=0.0078  Score=57.21  Aligned_cols=36  Identities=19%  Similarity=0.383  Sum_probs=29.4

Q ss_pred             CcccCCcHHHHHHHHhcCC-hHHHHHHhhcCHHHHhh
Q 041394            2 DITNALPVECISHIISLTT-PRDACRLAVVSPIFKSA   37 (265)
Q Consensus         2 ~~~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~a   37 (265)
                      ..+++||++++.+|+++++ ++|++++|+||+.|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4578999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.06  E-value=0.027  Score=53.54  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CCcHHHHHHHHhcC-ChHHHHHHhhcCHHHHhh
Q 041394            6 ALPVECISHIISLT-TPRDACRLAVVSPIFKSA   37 (265)
Q Consensus         6 ~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~a   37 (265)
                      +||++++.+|++++ +++|+++++.|||.|+.+
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            79999999999999 899999999999999987

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=93.60  E-value=1.7  Score=35.30  Aligned_cols=96  Identities=9%  Similarity=0.037  Sum_probs=59.2

Q ss_pred             cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEc--CceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 041394          152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVE--GINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG  229 (265)
Q Consensus       152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~--~g~~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~  229 (265)
                      ..|.||++|.+..-+|+.+..   ....+.+++...  +|..   +...+..       -....++|.+++-|.|.....
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~  129 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTIDM-------KTVGPNQWVHLYNPQYRIPSD  129 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEEE-------EEECSSCCEEEEEEEEECCTT
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEee-------EEEcCCccEEEECcEEEeCCC
Confidence            478999999999999987632   223444555442  2332   1111211       012358999999889998654


Q ss_pred             CceEEEEEEEEEeCCcccccEEEEEEEEEeccCCC
Q 041394          230 DRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLM  264 (265)
Q Consensus       230 ~~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~~~~  264 (265)
                      . ..+.+- .|.  ..-..=+.|+.|.|.|....|
T Consensus       130 ~-~~~~ly-ve~--~~~~~d~yiDdv~i~~~g~~~  160 (160)
T 1dyo_A          130 A-TDMYVY-VET--ADDTINFYIDEAIGAVAGTVI  160 (160)
T ss_dssp             C-EEEEEE-EEE--SSCCCCEEEEEEEEEETTCCC
T ss_pred             C-CEEEEE-EEC--CCCCccEEEEEEEEEeCcccC
Confidence            2 334332 233  234555899999999987654

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=91.14  E-value=0.11  Score=39.90  Aligned_cols=64  Identities=17%  Similarity=0.374  Sum_probs=40.2

Q ss_pred             CcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394            7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH   80 (265)
Q Consensus         7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~   80 (265)
                      .|-+.+.-||...+|....++-.-|+.+  .-++|-+|.+++-.||..--     +.   ...|-+++|.+|.+
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~   76 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD   76 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence            6888899999999999999999999966  78899999999999998332     11   45689999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	9e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 9e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 5  NALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVW 44
          ++LP E +  I S     +  +++ V   +   A  + +W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 1  MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDY 52
           D  + LP E   +++S   P+D  + A     ++  A+ +L+W +    + 
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 1  MDITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSD-LVWEKFLPSDYKLIISNS 59
           D+  +LP E    I +     D      VS  +         +W+K L S+   +    
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE-NFVSPKG 61

Query: 60 VSSSSLITSLSKKDLYFHLCHYPIFINN 87
           +S +L  S     L         F+ N
Sbjct: 62 FNSLNLKLSQKYPKLSQQDRLRLSFLEN 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.93
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.42
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.26
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	95.02
d1guia_	155	Carbohydrate binding module from laminarinase 16A	86.39

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1e-10  Score=75.29  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhh
Q 041394            4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVW   44 (265)
Q Consensus         4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW   44 (265)
                      ++.||++++.+|+++++|+|.||+++|||.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999999999999999999999999999999

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.9e-10  Score=83.68  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=45.4

Q ss_pred             cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcc
Q 041394            3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSD   51 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~d   51 (265)
                      -|..||+|++.+|+++++|+|+|++|+||+.|+.++.+|.+|++.+-.+
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            4788999999999999999999999999999999999999998877544

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=3.3e-08  Score=74.10  Aligned_cols=46  Identities=22%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcc-hhhhhccC
Q 041394            3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADS-DLVWEKFL   48 (265)
Q Consensus         3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-d~vW~~fL   48 (265)
                      -+.+||++++.+|+++++|.|.|++|+||+.|+..+++ ..+|.+.+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~   51 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   51 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            36789999999999999999999999999999987765 48998753

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-07  Score=73.09  Aligned_cols=48  Identities=19%  Similarity=0.439  Sum_probs=43.2

Q ss_pred             ccCCcH----HHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcc
Q 041394            4 TNALPV----ECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSD   51 (265)
Q Consensus         4 ~~~Lpe----~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~d   51 (265)
                      +..||.    +.+..|+|+++|+|.|++|+||+.|+..++++.+|.+++-.+
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            456775    999999999999999999999999999999999999887544

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.02  E-value=0.31  Score=36.16  Aligned_cols=103  Identities=8%  Similarity=0.042  Sum_probs=61.0

Q ss_pred             EEEeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEe
Q 041394          147 ARIETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFN  226 (265)
Q Consensus       147 G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~  226 (265)
                      -.+....|.||++|.+.+-+|+.+...+   ..+.+.+...++.. ......+..       .....++|.++..++|..
T Consensus        55 ~~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~W~~~~~~~~~~  123 (157)
T d1h6ya_          55 RALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSG-TQRYDTIDM-------KTVGPNQWVHLYNPQYRI  123 (157)
T ss_dssp             EECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTS-CEEEEEEEE-------EEECTTCCEEEEEEEEEC
T ss_pred             EEecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCC-ceeEEEeeE-------EEeccCccEEEEEEEEEC
Confidence            3344456899999999999998864333   33444444433221 111111110       122357899998889877


Q ss_pred             cCCCceEEEEEEEEEeCCcccccEEEEEEEEEeccCCC
Q 041394          227 KNGDRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLM  264 (265)
Q Consensus       227 ~~~~~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~~~~  264 (265)
                      ..+. ..+.|-+ +.  ..-..-+.|+-+.+.|++..|
T Consensus       124 ~~~~-~~~~l~~-~~--~~~~~~~yiDDv~~~~~~~~~  157 (157)
T d1h6ya_         124 PSDA-TDMYVYV-AT--ADDTINFYIDEAIGAVAGTVI  157 (157)
T ss_dssp             CTTC-EEEEEEE-EE--SSCCCCEEEEEEEEEETTCCC
T ss_pred             CCCC-cEEEEEE-EC--CCCCceEEEeeEEEecccccC
Confidence            5543 3455432 22  222233999999999998765

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=86.39  E-value=4.6  Score=29.43  Aligned_cols=88  Identities=10%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             ccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCce
Q 041394          153 ILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRG  232 (265)
Q Consensus       153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~  232 (265)
                      .|.||.+|.+.|..|-...      .++.+.+...++.........+           .-...|.++++ +|......+.
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~t~~W~~~s~-~f~~~~~~~~  129 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTV-----------NLTADWQTFTF-TYTHPDDADE  129 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEE-----------EECSSCEEEEE-EEECCTTSCS
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEE-----------eeccccEEEEE-EEEecCCCCc
Confidence            4779999999999886532      3444444433322101111111           12468999884 7877664444


Q ss_pred             EEEEEEEEEeCCcccccEEEEEEEEEec
Q 041394          233 TLLCSLYDFDRFGTRHGLVIQGIEFRPK  260 (265)
Q Consensus       233 ev~fs~~e~~~~~wK~GLiv~GieIRPk  260 (265)
                      .+.+.+. . ++.-.+.+.|+-|.|-||
T Consensus       130 ~~~l~~~-~-~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         130 VVQISFE-L-GEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             EEEEEEE-C-CSSCCCEEEEEEEEEEEC
T ss_pred             cEEEEEE-E-CCCCCcEEEEEEEEEEEC
Confidence            5555433 2 233356799999999997