Citrus Sinensis ID: 041427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MAASHTSSSSTHHQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
ccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccc
cccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEccccHccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHccccccc
maashtssssthhQILQTKYDVFlsfrgedtrnnfTDHLHVALIRNgfvafkddetldrgNEISSELSKAIEESNVSIVILSknyasspwcLDELAKIVECGNKRNDRKVFAVFygvdptdrVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
maashtssssthhqiLQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
MAAshtssssthhQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
**************ILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDET****************ESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWH***
******************KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKE*HEKVLKWRAALTRVASLAGWHLQ*
**************ILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
***************LQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGW****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAASHTSSSSTHHQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
Q40392 1144 TMV resistance protein N N/A no 0.841 0.116 0.468 2e-30
O82500 1095 Putative disease resistan no no 0.873 0.126 0.462 7e-27
O23530 1301 Protein SUPPRESSOR OF npr no no 0.848 0.102 0.418 4e-22
Q9FHE9 354 Protein PHLOEM PROTEIN 2- no no 0.917 0.409 0.339 5e-16
Q9SYC9571 Vesicle-associated protei no no 0.930 0.257 0.345 2e-15
Q9C5Q9 411 Protein PHLOEM PROTEIN 2- no no 0.841 0.323 0.326 3e-11
Q9FHE8 392 Protein PHLOEM PROTEIN 2- no no 0.911 0.367 0.333 2e-10
Q9SZ67 1895 Probable WRKY transcripti no no 0.759 0.063 0.281 2e-06
Q9FL92 1372 Probable WRKY transcripti no no 0.512 0.059 0.359 6e-06
Q9FH83 1288 Probable WRKY transcripti no no 0.544 0.066 0.329 0.0006
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function desciption
 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 10/143 (6%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR  FT HL+  L   G   F+DD+ L+ G  I  EL KAIEES  +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTD---------RVFAKYEEE 130
           + S+NYA+S WCL+EL KI+EC   R  + V  +FY VDP+          + F ++E +
Sbjct: 72  VFSENYATSRWCLNELVKIMEC-KTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETK 130

Query: 131 FKENHEKVLKWRAALTRVASLAG 153
           +K++ E + +WR AL   A+L G
Sbjct: 131 YKDDVEGIQRWRIALNEAANLKG 153
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Back     alignment and function description
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function description
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
224127726 1203 tir-nbs-lrr resistance protein [Populus 0.993 0.130 0.514 2e-41
105922482 1121 TIR-NBS-LRR type disease resistance prot 0.955 0.134 0.508 5e-40
224130518 1121 tir-nbs-lrr resistance protein [Populus 0.955 0.134 0.508 6e-40
224145716 532 tir-nbs-lrr resistance protein [Populus 0.930 0.276 0.540 8e-39
147802475 1244 hypothetical protein VITISV_027841 [Viti 0.867 0.110 0.560 1e-38
359493273 1233 PREDICTED: TMV resistance protein N-like 0.867 0.111 0.560 2e-38
147845097 826 hypothetical protein VITISV_009816 [Viti 0.930 0.177 0.520 2e-37
224111338156 predicted protein [Populus trichocarpa] 0.841 0.852 0.559 4e-37
357462269 1743 TIR-NBS-LRR-TIR type disease resistance 0.854 0.077 0.558 5e-37
105923251 1432 TIR-NBS type disease resistance protein 0.841 0.092 0.559 5e-37
>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 121/173 (69%), Gaps = 16/173 (9%)

Query: 1   MAASHTSSSSTHHQILQTK------YDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDD 54
           MAA+ +  ++T      T+      Y VFLSFRGEDTR NFT HL+  L R   + FKDD
Sbjct: 1   MAATSSRCNTTSPPFSPTQNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDD 60

Query: 55  ETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVF 114
           E L++G  I+ EL KAIE+S  S+++LSKNYASS WCLDELAKI+ECG+++  +K+F VF
Sbjct: 61  EKLEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDELAKIIECGDQKG-QKIFPVF 119

Query: 115 YGVDPTDRV---------FAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN 158
           Y V+P+D           FAK+EE+++EN +KV KWRAA+T+VA+L+GW  +N
Sbjct: 120 YDVEPSDVRKQTGSFQDDFAKHEEKYRENIDKVRKWRAAMTQVANLSGWTSKN 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845097|emb|CAN78476.1| hypothetical protein VITISV_009816 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111338|ref|XP_002332940.1| predicted protein [Populus trichocarpa] gi|222834194|gb|EEE72671.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357462269|ref|XP_003601416.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] gi|355490464|gb|AES71667.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|105923251|gb|ABF81466.1| TIR-NBS type disease resistance protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
TAIR|locus:2032723 275 AT1G72920 [Arabidopsis thalian 0.854 0.490 0.520 2.9e-32
TAIR|locus:2032753 371 AT1G72940 [Arabidopsis thalian 0.854 0.363 0.513 6e-32
TAIR|locus:2032602 1163 AT1G72860 [Arabidopsis thalian 0.835 0.113 0.528 5.9e-31
TAIR|locus:2032718 380 AT1G72910 [Arabidopsis thalian 0.854 0.355 0.489 7.9e-30
TAIR|locus:2032597 379 AT1G72950 [Arabidopsis thalian 0.848 0.353 0.492 2.7e-29
TAIR|locus:2205824 1384 AT1G27170 [Arabidopsis thalian 0.841 0.096 0.479 2.2e-28
TAIR|locus:2032733176 TIR "toll/interleukin-1 recept 0.854 0.767 0.475 3.1e-28
UNIPROTKB|Q40392 1144 N "TMV resistance protein N" [ 0.841 0.116 0.468 1.9e-27
TAIR|locus:2823998 380 AT1G17615 [Arabidopsis thalian 0.848 0.352 0.450 2.2e-27
TAIR|locus:2167457 1191 AT5G36930 [Arabidopsis thalian 0.879 0.116 0.472 3.4e-27
TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 75/144 (52%), Positives = 93/144 (64%)

Query:    18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVS 77
             TKYDVFLSFRG DTR NF   L+  L+R     FKDD+ L+ G  IS EL +AIEES  +
Sbjct:     7 TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTD--RVFAKYEEEFK--- 132
             +V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP    R      E+FK   
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENK-GSITVMPIFYGVDPCHLRRQIGDVAEQFKKHE 125

Query:   133 ---ENHEKVLKWRAALTRVASLAG 153
                E+HEKV  WR ALT +AS++G
Sbjct:   126 AREEDHEKVASWRRALTSLASISG 149
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006952 "defense response" evidence=ISS
GO:0007165 "signal transduction" evidence=IEA
GO:0009611 "response to wounding" evidence=IEP
TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] Back     alignment and assigned GO terms
TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
pfam01582135 pfam01582, TIR, TIR domain 1e-33
PLN03210 1153 PLN03210, PLN03210, Resistant to P 2e-32
smart00255140 smart00255, TIR, Toll - interleukin 1 - resistance 3e-32
PLN03194187 PLN03194, PLN03194, putative disease resistance pr 5e-12
pfam13676102 pfam13676, TIR_2, TIR domain 7e-11
pfam08937122 pfam08937, DUF1863, MTH538 TIR-like domain (DUF186 3e-04
>gnl|CDD|216585 pfam01582, TIR, TIR domain Back     alignment and domain information 
 Score =  115 bits (289), Expect = 1e-33
 Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 22  VFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF+SF G+D R+ F  HL   L   G     DD     G  I   L +AIE+S  +IVI 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 82  SKNYASSPWCLDELAKIVECGNK-RNDRKVFAVFYGVDPTD---------RVFAKYEEEF 131
           S NYASS WCLDEL +IV+C  +    + +  +FY VDP+D         + F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 132 KENHEKVLKWRAALT 146
            +  +K+  W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance Back     alignment and domain information
>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain Back     alignment and domain information
>gnl|CDD|220076 pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 158
PLN03194187 putative disease resistance protein; Provisional 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
smart00255140 TIR Toll - interleukin 1 - resistance. 99.92
PF01582141 TIR: TIR domain; InterPro: IPR000157 In Drosophila 99.92
PF13676102 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ 99.83
KOG3678832 consensus SARM protein (with sterile alpha and arm 99.37
PF08937130 DUF1863: MTH538 TIR-like domain (DUF1863); InterPr 99.1
PF08357150 SEFIR: SEFIR domain; InterPro: IPR013568 This doma 98.31
PF10137125 TIR-like: Predicted nucleotide-binding protein con 97.79
PF1327183 DUF4062: Domain of unknown function (DUF4062) 95.61
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 95.53
COG4916329 Uncharacterized protein containing a TIR (Toll-Int 94.51
COG4271233 Predicted nucleotide-binding protein containing TI 91.8
PF1435992 DUF4406: Domain of unknown function (DUF4406) 89.62
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 87.35
PF1425870 DUF4350: Domain of unknown function (DUF4350) 83.58
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 82.79
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 81.38
>PLN03194 putative disease resistance protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-42  Score=261.40  Aligned_cols=132  Identities=26%  Similarity=0.453  Sum_probs=120.4

Q ss_pred             CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHH
Q 041427           18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK   97 (158)
Q Consensus        18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~   97 (158)
                      +.|||||||+++|+++.|+++|+.+|+++||++|+|+.++.+|+.+.+.|.+||++|+++|+||||+|+.|.||++||..
T Consensus        25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~  104 (187)
T PLN03194         25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELAL  104 (187)
T ss_pred             CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCceeEEEEEecCCchhhHHhhHHHhhhCHHHHHHHHHHHHHhhccccceec
Q 041427           98 IVECGNKRNDRKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQ  157 (158)
Q Consensus        98 ~~~~~~~~~~~~iiPV~~~v~p~~v~f~~~~~~~~~~~~~~~~W~~al~~i~~~~G~~~~  157 (158)
                      |+++     +..||||||+|+|++|+-...   .....+++++||+||++||++.|++++
T Consensus       105 I~e~-----~~~ViPIFY~VdPsdVr~q~~---~~~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194        105 IMES-----KKRVIPIFCDVKPSQLRVVDN---GTCPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHc-----CCEEEEEEecCCHHHhhcccc---CCCCHHHHHHHHHHHHHHhccccccCC
Confidence            9987     568999999999999932111   122478999999999999999999764

>PLN03210 Resistant to P Back     alignment and domain information
>smart00255 TIR Toll - interleukin 1 - resistance Back     alignment and domain information
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo Back     alignment and domain information
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments Back     alignment and domain information
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e Back     alignment and domain information
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins Back     alignment and domain information
>PF13271 DUF4062: Domain of unknown function (DUF4062) Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown] Back     alignment and domain information
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription] Back     alignment and domain information
>PF14359 DUF4406: Domain of unknown function (DUF4406) Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>PF14258 DUF4350: Domain of unknown function (DUF4350) Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
3jrn_A176 Crystal Structure Of Tir Domain From Arabidopsis Th 2e-29
3ozi_A204 Crystal Structure Of The Tir Domain From The Flax D 2e-26
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 18  TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVS 77
           TKYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL   IE S  +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAK--YEEEFK--- 132
           +V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P    +      E+FK   
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125
Query: 133 --ENHEKVLKWRAALTRVASLAG 153
             E+ EKVLKWR ALT  A L+G
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 3e-79
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 2e-76
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 3e-61
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 2e-14
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 1e-09
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 4e-09
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 2e-05
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 Back     alignment and structure
 Score =  232 bits (594), Expect = 3e-79
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 14/167 (8%)

Query: 1   MAASHTSSSSTHHQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRG 60
             +  T+ S +   +   +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G
Sbjct: 20  AISDSTNPSGSFPSV---EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKG 76

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPT 120
            EI   L +AI++S + + I+S  YA S WCL ELA+IV    +   R +  +FY VDP+
Sbjct: 77  KEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

Query: 121 D---------RVFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQN 158
           D         + F K+  +F    + +  W+ AL +V  L GWH+  
Sbjct: 137 DVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGK 181
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159 Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178 Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 100.0
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 100.0
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 100.0
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 99.97
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 99.94
2js7_A160 Myeloid differentiation primary response protein M 99.93
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 99.93
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 99.93
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 99.83
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 98.76
3hyn_A189 Putative signal transduction protein; DUF1863 fami 98.2
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 95.97
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 95.1
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 94.39
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 93.51
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 90.73
2yvq_A143 Carbamoyl-phosphate synthase; conserved hypothetic 84.91
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 81.64
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Back     alignment and structure
Probab=100.00  E-value=1.9e-47  Score=291.79  Aligned_cols=149  Identities=40%  Similarity=0.748  Sum_probs=128.8

Q ss_pred             CCCcccCCCCCCceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCC
Q 041427            7 SSSSTHHQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA   86 (158)
Q Consensus         7 ~ss~~~~~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~   86 (158)
                      +|++++...++++|||||||+++|+++.|+.+|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|+
T Consensus        23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa  102 (204)
T 3ozi_A           23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA  102 (204)
T ss_dssp             -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred             cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence            33444445668999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhhccCCCceeEEEEEecCCchh---------hHHhhHHHhhhCHHHHHHHHHHHHHhhccccceec
Q 041427           87 SSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDR---------VFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQ  157 (158)
Q Consensus        87 ~S~wc~~El~~~~~~~~~~~~~~iiPV~~~v~p~~v---------~f~~~~~~~~~~~~~~~~W~~al~~i~~~~G~~~~  157 (158)
                      +|.||++||..|+++....++++||||||+|+|++|         +|.++++++  ..+++++||.||++||+++||++.
T Consensus       103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecC
Confidence            999999999999999433568899999999999999         677776665  368999999999999999999985
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Back     alignment and structure
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 158
d1fyva_161 c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H 3e-22
d1fyxa_149 c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H 9e-19
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 3e-22
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSI 78
           ++  F+S+ G D+     + L   L + G      +     G  I   +   IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDRVFAKYEE-EFKENHEK 137
            +LS N+  S WC  EL              +  +     P   + + Y + +       
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRT 130

Query: 138 VLKWR 142
            L+W 
Sbjct: 131 YLEWP 135
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
d1fyva_161 Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ 99.93
d1fyxa_149 Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ 99.91
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 96.11
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 94.59
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 94.58
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 91.29
d1eiwa_111 Hypothetical protein MTH538 {Archaeon Methanobacte 89.73
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 86.65
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 86.26
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 85.73
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 83.68
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 83.39
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-27  Score=172.27  Aligned_cols=104  Identities=21%  Similarity=0.351  Sum_probs=94.8

Q ss_pred             cCCCCCCceeEEEecccCcCchhHH-HHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChh
Q 041427           12 HHQILQTKYDVFLSFRGEDTRNNFT-DHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW   90 (158)
Q Consensus        12 ~~~~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~w   90 (158)
                      .....+++|||||||+++|  ..|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus         5 ~~~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w   82 (161)
T d1fyva_           5 EELQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEW   82 (161)
T ss_dssp             TTSSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTS
T ss_pred             hHcCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChH
Confidence            3345678999999999999  4577 579999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhccCCCceeEEEEEec
Q 041427           91 CLDELAKIVECGNKRNDRKVFAVFYGV  117 (158)
Q Consensus        91 c~~El~~~~~~~~~~~~~~iiPV~~~v  117 (158)
                      |..|+..+++++.+.++.++|||+++.
T Consensus        83 ~~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          83 CHYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             HHHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHHHcCCCceeEEEEec
Confidence            999999999886667788999999973
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure