Citrus Sinensis ID: 041441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVIN
ccEEEccEEEEEccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccEEEcccccccccEEEcccccccEEEEcHHHHHHcccccccEEccccccccccccccccccccccccccHHccccccccccccccccccccEEccccHHHHHcccccEEEEHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccEEEEEccccEEEEEEEEccccccHHHHHccc
cEEEEcccEEEEccccccHHHHHccccHHHcccccccccccccEEEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccccccccccHccHEEEHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEEHHHHEEHEEEcccccccccHHHHccEEEEEccHHHHccccccEEEEHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHcccHEEEccccEEEEEccccccccccHHHcccc
hfllkenmlevrspcvtpevVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKeygitapdtknplsdpypfnlmfqtsvgpsgltaayvrpetapgifvnfkdlyynngnklpFAAAQIGQAfrneisprqgfsrVREFTLAEIehfvdpkdkshpkfsevknleflmfpreeQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDaeiecsygwiecvgiadrsaydLRAHTVIN
hfllkenmlevrspcvtpevvlkasghvekltdqmvkdekTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIehfvdpkdkshpkFSEVKNLEFLMFPREEQMSAQSAKKIrlgeavsrgivnnETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVIN
HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVIN
**********VRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAP*****LSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFV***************LEFLM**************IRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAH****
HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLRED****LEQAAELRRTLAM**DLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYD*RAHT***
HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPRE*********KIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVIN
HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRA*****
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HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCxxxxxxxxxxxxxxxxxxxxxLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
O23627 729 Glycine--tRNA ligase 1, m yes no 0.990 0.421 0.820 1e-154
Q9FXG2463 Putative glycine--tRNA li no no 0.980 0.656 0.659 1e-113
Q9CZD3 729 Glycine--tRNA ligase OS=M yes no 0.983 0.418 0.565 1e-100
Q5I0G4 637 Glycine--tRNA ligase (Fra no no 0.983 0.478 0.565 1e-100
P41250 739 Glycine--tRNA ligase OS=H yes no 0.983 0.412 0.562 2e-99
Q5RBL1 739 Glycine--tRNA ligase OS=P yes no 0.983 0.412 0.562 2e-99
Q04451 680 Glycine--tRNA ligase OS=B N/A no 0.977 0.445 0.542 2e-94
P38088 690 Glycine--tRNA ligase 1, m yes no 0.990 0.444 0.488 2e-91
Q10039 742 Glycine--tRNA ligase OS=C yes no 0.983 0.411 0.535 6e-91
Q10179 652 Putative glycine--tRNA li yes no 0.990 0.470 0.473 1e-89
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  543 bits (1400), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/307 (82%), Positives = 278/307 (90%)

Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           HF+L+ENMLEV  PCVTPEVVLKASGHV+K TD MVKDEKTGT YRAD LLKD+C EKL 
Sbjct: 164 HFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDYCTEKLE 223

Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
           +D+ +S E+AAEL+  LA+M+D S E+LGAKI+EYGITAPDTKNPLSDPYPFNLMFQTS+
Sbjct: 224 KDLTISAEKAAELKDVLAVMEDFSPEQLGAKIREYGITAPDTKNPLSDPYPFNLMFQTSI 283

Query: 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
           GPSGL   Y+RPETA GIFVNFKDLYY NG KLPFAAAQIGQAFRNEISPRQG  RVREF
Sbjct: 284 GPSGLIPGYMRPETAQGIFVNFKDLYYYNGKKLPFAAAQIGQAFRNEISPRQGLLRVREF 343

Query: 181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
           TLAEIEHFVDP++KSHPKFS+V  LEFLMFPREEQMS QSAKK+ LGEAV++G VNNET+
Sbjct: 344 TLAEIEHFVDPENKSHPKFSDVAKLEFLMFPREEQMSGQSAKKLCLGEAVAKGTVNNETL 403

Query: 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
           GYFIGRVYLFL+RLGID++ LRFRQHLANEMAHYAADCWDAEIE SYGWIECVGIADRSA
Sbjct: 404 GYFIGRVYLFLTRLGIDKERLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSA 463

Query: 301 YDLRAHT 307
           YDLRAH+
Sbjct: 464 YDLRAHS 470
Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q9FXG2|SYGC_ARATH Putative glycine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g29870 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3 Back     alignment and function description
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1 Back     alignment and function description
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2 Back     alignment and function description
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3 Back     alignment and function description
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2 Back     alignment and function description
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grs1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
224053571 690 predicted protein [Populus trichocarpa] 0.990 0.444 0.850 1e-158
255543218 686 glycyl-tRNA synthetase, putative [Ricinu 0.993 0.448 0.840 1e-158
449526656 729 PREDICTED: LOW QUALITY PROTEIN: glycine- 0.990 0.421 0.840 1e-156
449470277 729 PREDICTED: glycine--tRNA ligase 1, mitoc 0.990 0.421 0.840 1e-156
224075451 691 predicted protein [Populus trichocarpa] 0.990 0.444 0.840 1e-155
297734516 687 unnamed protein product [Vitis vinifera] 0.990 0.446 0.837 1e-154
225456501 710 PREDICTED: glycyl-tRNA synthetase 1, mit 0.990 0.432 0.837 1e-154
313760928 688 glycyl-tRNA synthetase-like protein [Lir 0.990 0.446 0.827 1e-154
313760923 688 glycyl-tRNA synthetase-like protein [Lir 0.990 0.446 0.827 1e-154
297851412 730 glycyl-tRNA synthetase [Arabidopsis lyra 0.990 0.420 0.827 1e-153
>gi|224053571|ref|XP_002297878.1| predicted protein [Populus trichocarpa] gi|222845136|gb|EEE82683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/307 (85%), Positives = 285/307 (92%)

Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           HF+L+ENMLEV  PCVTPEVVLKASGHV+K TD MVKDEKTGT YRAD LLKDFCNEK++
Sbjct: 125 HFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNEKIQ 184

Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
           +D+ +S E+AAEL+  LA++DDLS EELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTS+
Sbjct: 185 KDLGISAEKAAELKHVLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSI 244

Query: 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
           GPSGL+  Y+RPETA GIFVNFKDLYY NGNKLPFAAAQIGQAFRNEISPRQG  RVREF
Sbjct: 245 GPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREF 304

Query: 181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
           TLAEIEHFVDP+DKSHPK+SEV +LEFLMFPRE+Q+S QSAKKIRLGEAVS+GIVNNET+
Sbjct: 305 TLAEIEHFVDPEDKSHPKYSEVADLEFLMFPREQQVSGQSAKKIRLGEAVSKGIVNNETL 364

Query: 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
           GYFIGRVYLFL+ LGID+D LRFRQHLANEMAHYAADCWDAEIE SYGWIECVGIADRSA
Sbjct: 365 GYFIGRVYLFLTHLGIDKDRLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSA 424

Query: 301 YDLRAHT 307
           YDLRAHT
Sbjct: 425 YDLRAHT 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543218|ref|XP_002512672.1| glycyl-tRNA synthetase, putative [Ricinus communis] gi|223548633|gb|EEF50124.1| glycyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449526656|ref|XP_004170329.1| PREDICTED: LOW QUALITY PROTEIN: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470277|ref|XP_004152844.1| PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075451|ref|XP_002304639.1| predicted protein [Populus trichocarpa] gi|222842071|gb|EEE79618.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297734516|emb|CBI15763.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456501|ref|XP_002280957.1| PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|313760928|gb|ADR79441.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera] Back     alignment and taxonomy information
>gi|313760923|gb|ADR79437.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera] Back     alignment and taxonomy information
>gi|297851412|ref|XP_002893587.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297339429|gb|EFH69846.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2019327 729 AT1G29880 [Arabidopsis thalian 0.990 0.421 0.820 2.8e-137
TAIR|locus:2019342463 AT1G29870 [Arabidopsis thalian 0.977 0.654 0.663 1.1e-103
UNIPROTKB|F1Q332 797 GARS "Uncharacterized protein" 0.983 0.382 0.562 6.3e-92
RGD|1307856 637 Gars "glycyl-tRNA synthetase" 0.983 0.478 0.565 1e-91
UNIPROTKB|Q5I0G4 637 Gars "Glycine--tRNA ligase" [R 0.983 0.478 0.565 1e-91
MGI|MGI:2449057 729 Gars "glycyl-tRNA synthetase" 0.983 0.418 0.565 1.3e-91
UNIPROTKB|E1C7P8 688 GARS "Uncharacterized protein" 0.983 0.443 0.562 3.5e-91
UNIPROTKB|F1NRK5 747 GARS "Uncharacterized protein" 0.983 0.408 0.562 3.5e-91
UNIPROTKB|P41250 739 GARS "Glycine--tRNA ligase" [H 0.983 0.412 0.562 4.5e-91
UNIPROTKB|Q5RBL1 739 GARS "Glycine--tRNA ligase" [P 0.983 0.412 0.562 4.5e-91
TAIR|locus:2019327 AT1G29880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 252/307 (82%), Positives = 278/307 (90%)

Query:     1 HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
             HF+L+ENMLEV  PCVTPEVVLKASGHV+K TD MVKDEKTGT YRAD LLKD+C EKL 
Sbjct:   164 HFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDYCTEKLE 223

Query:    61 EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
             +D+ +S E+AAEL+  LA+M+D S E+LGAKI+EYGITAPDTKNPLSDPYPFNLMFQTS+
Sbjct:   224 KDLTISAEKAAELKDVLAVMEDFSPEQLGAKIREYGITAPDTKNPLSDPYPFNLMFQTSI 283

Query:   121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
             GPSGL   Y+RPETA GIFVNFKDLYY NG KLPFAAAQIGQAFRNEISPRQG  RVREF
Sbjct:   284 GPSGLIPGYMRPETAQGIFVNFKDLYYYNGKKLPFAAAQIGQAFRNEISPRQGLLRVREF 343

Query:   181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
             TLAEIEHFVDP++KSHPKFS+V  LEFLMFPREEQMS QSAKK+ LGEAV++G VNNET+
Sbjct:   344 TLAEIEHFVDPENKSHPKFSDVAKLEFLMFPREEQMSGQSAKKLCLGEAVAKGTVNNETL 403

Query:   241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
             GYFIGRVYLFL+RLGID++ LRFRQHLANEMAHYAADCWDAEIE SYGWIECVGIADRSA
Sbjct:   404 GYFIGRVYLFLTRLGIDKERLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSA 463

Query:   301 YDLRAHT 307
             YDLRAH+
Sbjct:   464 YDLRAHS 470
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004820 "glycine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2019342 AT1G29870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q332 GARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307856 Gars "glycyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5I0G4 Gars "Glycine--tRNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2449057 Gars "glycyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7P8 GARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRK5 GARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P41250 GARS "Glycine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBL1 GARS "Glycine--tRNA ligase" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23627SYGM1_ARATH6, ., 1, ., 1, ., 1, 40.82080.99030.4211yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.140.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
PLN02734 684 PLN02734, PLN02734, glycyl-tRNA synthetase 0.0
COG0423 558 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [ 1e-129
TIGR00389 551 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, d 1e-120
PRK04173 456 PRK04173, PRK04173, glycyl-tRNA synthetase; Provis 3e-91
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 5e-89
PRK14894 539 PRK14894, PRK14894, glycyl-tRNA synthetase; Provis 1e-28
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 3e-22
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 8e-11
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 8e-08
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase Back     alignment and domain information 
 Score =  628 bits (1621), Expect = 0.0
 Identities = 251/307 (81%), Positives = 279/307 (90%)

Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           HF+L+ENMLEV  PCVTPEVVLKASGHV+K TD MVKDEKTGT +RAD LLKDFC EKL 
Sbjct: 122 HFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEEKLE 181

Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
           +D+ +S E+AAEL+  LA++DDLS EELGAKIKEYGI APDTKNPLSDPYPFNLMFQTS+
Sbjct: 182 KDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSI 241

Query: 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
           GPSGL+  Y+RPETA GIFVNF+DLYY NG KLPFAAAQIGQAFRNEISPRQG  RVREF
Sbjct: 242 GPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREF 301

Query: 181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
           TLAEIEHFVDP+DKSHPKFSEV +LEFL+FPREEQ+  Q AK +RLGEAVS+GIVNNET+
Sbjct: 302 TLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETL 361

Query: 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
           GYFIGR YLFL++LGID++ LRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA
Sbjct: 362 GYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 421

Query: 301 YDLRAHT 307
           YDL+AH+
Sbjct: 422 YDLKAHS 428

Length = 684
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>gnl|CDD|237851 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
PLN02734 684 glycyl-tRNA synthetase 100.0
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
COG0423 558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
KOG2298 599 consensus Glycyl-tRNA synthetase and related class 100.0
PRK14894 539 glycyl-tRNA synthetase; Provisional 100.0
PRK04173 456 glycyl-tRNA synthetase; Provisional 100.0
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 100.0
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
KOG1637 560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 99.98
PLN02908 686 threonyl-tRNA synthetase 99.97
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.97
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.97
PLN02837 614 threonine-tRNA ligase 99.97
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.96
PRK03991 613 threonyl-tRNA synthetase; Validated 99.95
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.95
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.95
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.94
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.94
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.91
TIGR00414418 serS seryl-tRNA synthetase. This model represents 99.9
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.89
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.88
PRK08661 477 prolyl-tRNA synthetase; Provisional 99.86
PRK05431425 seryl-tRNA synthetase; Provisional 99.86
PRK12325 439 prolyl-tRNA synthetase; Provisional 99.85
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.83
PLN02678448 seryl-tRNA synthetase 99.82
PLN02320502 seryl-tRNA synthetase 99.8
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.78
PRK00960517 seryl-tRNA synthetase; Provisional 99.78
PRK09194 565 prolyl-tRNA synthetase; Provisional 99.73
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 99.67
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 99.48
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.35
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.29
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.28
CHL00201 430 syh histidine-tRNA synthetase; Provisional 99.17
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 99.15
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.04
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 98.9
KOG2324 457 consensus Prolyl-tRNA synthetase [Translation, rib 98.73
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 98.73
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.56
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.54
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 98.53
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 98.52
PRK07080317 hypothetical protein; Validated 98.1
PLN02530 487 histidine-tRNA ligase 97.72
PRK12420 423 histidyl-tRNA synthetase; Provisional 97.69
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 97.63
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 97.61
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.54
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 97.44
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.31
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 97.18
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 96.79
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 96.6
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 96.59
PLN02972 763 Histidyl-tRNA synthetase 96.57
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 96.38
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 95.95
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 95.91
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 95.81
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 95.52
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 95.48
PRK09350306 poxB regulator PoxA; Provisional 95.13
PRK06462335 asparagine synthetase A; Reviewed 95.05
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 92.15
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 91.92
PLN02788 402 phenylalanine-tRNA synthetase 90.88
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 90.18
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 88.81
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 88.04
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 87.36
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 87.02
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 85.83
PLN02903 652 aminoacyl-tRNA ligase 84.55
PRK06266178 transcription initiation factor E subunit alpha; V 84.52
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 84.11
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 83.68
PRK12445505 lysyl-tRNA synthetase; Reviewed 83.47
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 83.42
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 83.21
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 83.19
PF14353128 CpXC: CpXC protein 83.14
PTZ00385 659 lysyl-tRNA synthetase; Provisional 82.99
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 82.05
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 81.86
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 81.62
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 81.43
TIGR00499 496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 81.29
PLN02850530 aspartate-tRNA ligase 81.05
PTZ00417 585 lysine-tRNA ligase; Provisional 80.76
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-118  Score=914.20  Aligned_cols=309  Identities=81%  Similarity=1.317  Sum_probs=299.7

Q ss_pred             CeeecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhc
Q 041441            1 HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMM   80 (310)
Q Consensus         1 ~fv~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (310)
                      |||++++|+|||||||||+.||+|||||++|+|+||+|++||+|||||||||+.+++.+.++.+++++.+++++.+++.+
T Consensus       122 ~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~  201 (684)
T PLN02734        122 HFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVL  201 (684)
T ss_pred             HHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999987665543456777889999999999


Q ss_pred             cCCCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeec
Q 041441           81 DDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQI  160 (310)
Q Consensus        81 ~~~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqi  160 (310)
                      ++++.+||.++|++|+|+||.||++||+|++|||||+|+|||+++.+||||||||||||+||||+++++|+|||||+|||
T Consensus       202 d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQI  281 (684)
T PLN02734        202 DDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQI  281 (684)
T ss_pred             cCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441          161 GQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI  240 (310)
Q Consensus       161 Gk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~  240 (310)
                      |++||||||||+||+|||||||||+|+||+|++.+|++|..|.|+.+++|++..|..+.+.++||+++|+++|+|+|+|+
T Consensus       282 Gk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l  361 (684)
T PLN02734        282 GQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETL  361 (684)
T ss_pred             cHhhhcccCcccceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHH
Confidence            99999999999999999999999999999999999999999999999999999998887778999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhhhhhcc
Q 041441          241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTVI  309 (310)
Q Consensus       241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~~H~~~  309 (310)
                      +||++++++||.++||++++||||||+++||||||.+|||+||+|+|||+||+||||||||||++|+++
T Consensus       362 ~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~  430 (684)
T PLN02734        362 GYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDK  430 (684)
T ss_pred             HHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999975

>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2pme_A 693 The Apo Crystal Structure Of The Glycyl-Trna Synthe 1e-100
2pmf_A 693 The Crystal Structure Of A Human Glycyl-trna Synthe 1e-100
2q5i_A 691 Crystal Structure Of Apo S581l Glycyl-Trna Syntheta 1e-100
2q5h_A 691 Crystal Structure Of Apo-Wildtype Glycyl-Trna Synth 1e-100
1ati_A 505 Crystal Structure Of Glycyl-Trna Synthetase From Th 6e-30
1ggm_A 442 Glycyl-Trna Synthetase From Thermus Thermophilus Co 7e-22
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase Length = 693 Back     alignment and structure 
Iteration: 1

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/306 (56%), Positives = 216/306 (70%), Gaps = 1/306 (0%)
Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           HF+ +E +LE+    +TPE VLK SGHV+K  D MVKD K G  +RAD LLK    +KL 
Sbjct: 114 HFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHL-QKLM 172
Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
            D + S+E+ +E+   LA +D+   +EL      Y + +P T N LS P  FNLMF+T +
Sbjct: 173 SDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFI 232
Query: 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
           GP G    Y+RPETA GIF+NFK L   N  KLPFAAAQIG +FRNEISPR G  RVREF
Sbjct: 233 GPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREF 292
Query: 181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
           T+AEIEHFVDP +K HPKF  V +L   ++  + Q+S QSA+K+RLG+AV +G++NN  +
Sbjct: 293 TMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVL 352
Query: 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
           GYFIGR+YL+L+++GI  D LRFRQH+ NEMAHYA DCWDAE + SYGWIE VG ADRS 
Sbjct: 353 GYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSC 412
Query: 301 YDLRAH 306
           YDL  H
Sbjct: 413 YDLSCH 418
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase Mutant Length = 693 Back     alignment and structure
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase Mutant Length = 691 Back     alignment and structure
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase Length = 691 Back     alignment and structure
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Back     alignment and structure
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 1e-133
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 2e-99
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 7e-35
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 3e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Back     alignment and structure
 Score =  394 bits (1013), Expect = e-133
 Identities = 172/307 (56%), Positives = 216/307 (70%), Gaps = 1/307 (0%)

Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           HF+ +E +LE+    +TPE VLK SGHV+K  D MVKD K G  +RAD LLK    +KL 
Sbjct: 114 HFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHL-QKLM 172

Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSV 120
            D + S+E+ +E+   LA +D+   +EL      Y + +P T N LS P  FNLMF+T +
Sbjct: 173 SDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFI 232

Query: 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREF 180
           GP G    Y+RPETA GIF+NFK L   N  KLPFAAAQIG +FRNEISPR G  RVREF
Sbjct: 233 GPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREF 292

Query: 181 TLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240
           T+AEIEHFVDP +K HPKF  V +L   ++  + Q+S QSA+K+RLG+AV +G++NN  +
Sbjct: 293 TMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVL 352

Query: 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSA 300
           GYFIGR+YL+L+++GI  D LRFRQH+ NEMAHYA DCWDAE + SYGWIE VG ADRS 
Sbjct: 353 GYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSC 412

Query: 301 YDLRAHT 307
           YDL  H 
Sbjct: 413 YDLSCHA 419
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 100.0
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.97
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.97
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.94
3err_A536 Fusion protein of microtubule binding domain from 99.94
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.94
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 99.94
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.93
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.93
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.92
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 99.91
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.91
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 99.9
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.89
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 99.89
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 99.89
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.88
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 99.88
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.86
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.8
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.71
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 99.62
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.41
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.36
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.29
3rac_A 373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.28
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.26
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 99.23
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.13
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 99.08
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.04
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 98.98
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 98.88
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 98.82
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 98.78
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 98.26
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 96.77
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.71
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.66
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 96.58
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 96.46
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.02
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.99
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.98
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.55
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 95.38
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 95.15
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 94.87
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 94.56
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 94.5
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 94.2
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 94.2
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 93.11
2k5c_A95 Uncharacterized protein PF0385; structural genomic 90.08
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 88.99
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 88.66
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 88.65
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 87.86
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 85.91
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 84.0
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 81.7
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
Probab=100.00  E-value=1.4e-85  Score=682.00  Aligned_cols=307  Identities=55%  Similarity=0.950  Sum_probs=292.3

Q ss_pred             CeeecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhc
Q 041441            1 HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMM   80 (310)
Q Consensus         1 ~fv~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (310)
                      ||+.++||.||+||+|+|.+||++||||++|+|+|++|++|+++||||||+++++++.+.+ .+.++++.++|..+++.+
T Consensus       114 ~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~~~~~e~yr~D~l~e~~~~~~~~~-~~~~~~~~~e~~~~~~~l  192 (693)
T 2zt5_A          114 HFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSD-KKCSVEKKSEMESVLAQL  192 (693)
T ss_dssp             HTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEHHHHHHHHHHHHHHS-TTCCHHHHHHHHHHHTTT
T ss_pred             HHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceeeccCCceeeccHhHHHHHHHhhcc-ccccHHHHHHHHHHHhhc
Confidence            3555679999999999999999999999999999999999999999999999987655543 345667788999999999


Q ss_pred             cCCCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeec
Q 041441           81 DDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQI  160 (310)
Q Consensus        81 ~~~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqi  160 (310)
                      ++++.+||.++|++++|+||.||++||+|++|||||+|+|||+++.++|||||||||||+||+|++++++++|||++|||
T Consensus       193 ~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqi  272 (693)
T 2zt5_A          193 DNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQI  272 (693)
T ss_dssp             TTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEE
T ss_pred             cCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999766999999999


Q ss_pred             ccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441          161 GQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI  240 (310)
Q Consensus       161 Gk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~  240 (310)
                      |++||||||||+||+|+|||+|+|+|+||+|++..|+.|..|.|..+++|++..|.+|....++++.+|+++|+|+++|+
T Consensus       273 G~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~  352 (693)
T 2zt5_A          273 GNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVL  352 (693)
T ss_dssp             EEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHH
T ss_pred             cceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHH
Confidence            99999999999999999999999999999999998999999999999999999998887799999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhhhhhc
Q 041441          241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTV  308 (310)
Q Consensus       241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~~H~~  308 (310)
                      +||++.+..||.++|++++++||+++.++|+|||+.+|||+++.+++||.||+|+|+|++|||++|.+
T Consensus       353 ~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~  420 (693)
T 2zt5_A          353 GYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHAR  420 (693)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999975
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d1atia2394 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 1e-71
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 1e-30
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 3e-23
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  224 bits (572), Expect = 1e-71
 Identities = 96/311 (30%), Positives = 136/311 (43%), Gaps = 47/311 (15%)

Query: 1   HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLR 60
           +   +++M  + +  +T  +VL  SGH     D MV +  T   YR D LLK+   E L+
Sbjct: 53  NVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLK 112

Query: 61  EDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQT 118
              R ++E   E    L      + E  G  +   G+  P +  P   + P  FN+MFQ 
Sbjct: 113 RLYR-AMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQD 171

Query: 119 SVGPSGLTA--AYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSR 176
             GP G     AY+RPETA GIFVNFK++      KL F  AQIG+AFRNEI+PR    R
Sbjct: 172 LRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFR 231

Query: 177 VREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVN 236
           VREF   EIE+FV P +  +                                        
Sbjct: 232 VREFEQMEIEYFVRPGEDEYWH-------------------------------------- 253

Query: 237 NETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIA 296
                Y++     +   +G+ +++L   Q      AHYA    D      +G +E  GIA
Sbjct: 254 ----RYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIA 309

Query: 297 DRSAYDLRAHT 307
            R+ +DL +HT
Sbjct: 310 QRTDFDLGSHT 320
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 99.96
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 99.96
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.86
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.81
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.66
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.61
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 97.03
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 96.55
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 95.78
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 95.53
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 95.5
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 95.09
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 94.79
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 87.57
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 86.88
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 83.74
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 83.2
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 82.54
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-104  Score=768.84  Aligned_cols=265  Identities=35%  Similarity=0.509  Sum_probs=193.2

Q ss_pred             Ceee-cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhh
Q 041441            1 HFLL-KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAM   79 (310)
Q Consensus         1 ~fv~-~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (310)
                      |||. +++|+|||||||||++||+|||||++|+||||+|++||+|||||||+|+.+++.+... ....+...+....+..
T Consensus        52 ~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~-~~~~~~~~~~~~~~~~  130 (394)
T d1atia2          52 RNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRL-YRAMEVEEENLHALVQ  130 (394)
T ss_dssp             HHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEEC-----------------------------------------
T ss_pred             HHhhccCCEEEecccccCCHHHhhhcCCCCCCcccccccCCCCceecchhHHhhhhhhhhhhh-hhhhhhhhhhHHHHHH
Confidence            5774 8999999999999999999999999999999999999999999999999876544321 1122222333444556


Q ss_pred             ccCCCHHHHHHHHHHhCCCCCCCC--CCCCCCcccceeeeeeeccCCC--CceecCCCchhhHHHHHhhhhhhccCCCCc
Q 041441           80 MDDLSVEELGAKIKEYGITAPDTK--NPLSDPYPFNLMFQTSVGPSGL--TAAYVRPETAPGIFVNFKDLYYNNGNKLPF  155 (310)
Q Consensus        80 ~~~~~~~~~~~~i~~~~i~cP~~g--~~l~~~~~FNLMF~t~iGp~~~--~~~yLRPETAQgif~nFk~~l~s~r~kLPf  155 (310)
                      +...+.+++.++|.+++|+||.||  ++||+|++|||||+|.|||+++  +.+|||||||||||+||+++++++|+||||
T Consensus       131 ~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPF  210 (394)
T d1atia2         131 AMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGF  210 (394)
T ss_dssp             ----------------------------CCCCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSE
T ss_pred             HHhhChHhhhhhHHhhCCCCCCCCCcCCcCccchhhhhccccccccccccceeEEChhhhhHHHHHHHHHHHHcccCCCc
Confidence            677788899999999999999999  5799999999999999999876  479999999999999999999999999999


Q ss_pred             eeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEeccccccccc
Q 041441          156 AAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIV  235 (310)
Q Consensus       156 ~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i  235 (310)
                      |+|||||+||||||||+||+|+|||||||+|+||+|++.                                         
T Consensus       211 GiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~-----------------------------------------  249 (394)
T d1atia2         211 GIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGED-----------------------------------------  249 (394)
T ss_dssp             EEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGH-----------------------------------------
T ss_pred             eeeeeccccccccCcccCCcccccceeeeeEEEEeCCcc-----------------------------------------
Confidence            999999999999999999999999999999999999773                                         


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhhhhhc
Q 041441          236 NNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTV  308 (310)
Q Consensus       236 ~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~~H~~  308 (310)
                       ++|++||++++.+||.++||++++||||||.++||||||.+|||+||+|||||+||+||||||||||++|+|
T Consensus       250 -~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~k  321 (394)
T d1atia2         250 -EYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTK  321 (394)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCS
T ss_pred             -hHHHHHHHHHHHHHHHHhcCCccceeEEeecchhhhhcccceEEEEEecCCCcEechhhhccchhhHHHHhh
Confidence             589999999999999999999999999999999999999999999999999999999999999999999987
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure