Citrus Sinensis ID: 041449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGWVKN
Secondary Structure (PSIPRED)
cEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHHcccEEEEEEEccccEEEEEEccccccccccEEEEEEEccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHEcEcccccHHHHHHHEHHHHHccccccEEEEEccccEEEccccccccccccccHHHHHHHHHcHHHHcccccHHHHHHHHHccccccEEEEccccccHHEEEcccEEEEEEccccccccEEEEEEccccHHHHHHHHHHHHHHccccEEEccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MEVEVKLRLKDSTAHQKLSnilspyhkqtlfqeniffddkdsklssNAAVLRLRFYNLnshcilslkakptisdgisrvqeleepvplatatesvakpqllgqIDSKIMKMVKQeygvgdefvclggfKNVRAVYEWKGLKLeldettygfgtsyeieceslepeRDRKLIEGLLeengieydfsdfskfavfrsgklpgwvkn
Flexible Loop (DISEMBL)
mevevklrlkdstahqklsnilspyhKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPlatatesvakpqllgqiDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEieceslepeRDRKLIEGLLEENGIEYDFSDFSKFAvfrsgklpgwvkn
Low Complexity Region (SEG)
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKlieglleengieYDFSDFSKFAVFRSGKLPGWVKN
Disordered region (IsUnstruct)
*******************NILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS********************PQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGW***
Disordered Region (DISOPRED)
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTI*D*ISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP*****
Disordered Region (DISEMBL)
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGWVKN
Disordered Region (DISPRO)
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGW***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGWVKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
224072871	204	predicted protein [Populus trichocarpa]	0.975	0.975	0.684	2e-71
147796316	200	hypothetical protein VITISV_036603 [Viti	0.970	0.99	0.613	2e-64
356568939	201	PREDICTED: uncharacterized protein LOC10	0.970	0.985	0.616	3e-64
255553297	202	adenylate cyclase, putative [Ricinus com	0.975	0.985	0.618	4e-63
306035016	205	adenylate cyclase [Ipomoea nil]	0.975	0.970	0.611	8e-63
225463589	200	PREDICTED: uncharacterized protein LOC10	0.970	0.99	0.618	1e-62
449468946	238	PREDICTED: uncharacterized protein LOC10	0.980	0.840	0.594	2e-60
225446199	201	PREDICTED: uncharacterized protein LOC10	0.975	0.990	0.57	3e-58
359484679	225	PREDICTED: uncharacterized protein LOC10	1.0	0.906	0.560	4e-58
356562926	199	PREDICTED: uncharacterized protein LOC10	0.975	1.0	0.542	2e-57

>gi|224072871|ref|XP_002303921.1| predicted protein [Populus trichocarpa] gi|118489224|gb|ABK96418.1| unknown [Populus trichocarpa x Populus deltoides] gi|222841353|gb|EEE78900.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 168/203 (82%), Gaps = 4/203 (1%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL DS +HQKLS ILS +H +TL QENIFFD  +SKLSSN A LRLRFYNL+S
Sbjct: 1   MEVEVKLRLPDSNSHQKLSIILSSFHTKTLIQENIFFDTTNSKLSSNFAALRLRFYNLDS 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKP-QLLGQID-SKIMKMVKQEYGV 118
           +CILSLKAKP +SDGISRV+E EEP+        VA+P QLLG ++ SKI++ V++E+GV
Sbjct: 61  YCILSLKAKPIMSDGISRVEEQEEPIDPKIGRMCVAEPGQLLGLLESSKIIQRVRREFGV 120

Query: 119 GDE--FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLE 176
           G+    VCLG F+NVR V++WKGLKLELDET Y FGTSYEIECES EPE+D+KLIEGLL+
Sbjct: 121 GENEVLVCLGMFRNVRQVFDWKGLKLELDETIYDFGTSYEIECESKEPEKDKKLIEGLLK 180

Query: 177 ENGIEYDFSDFSKFAVFRSGKLP 199
           +NGIE+ +S+ +KFAVFRSGKLP
Sbjct: 181 DNGIEFSYSEANKFAVFRSGKLP 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147796316|emb|CAN72544.1| hypothetical protein VITISV_036603 [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 155/199 (77%), Gaps = 1/199 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL D+ +HQKLS++L+P+H +TL QENIFFD   ++LSS  AVLRLRFY+L+S
Sbjct: 1   MEVEVKLRLPDAASHQKLSDLLAPFHVKTLIQENIFFDGAAAELSSKFAVLRLRFYDLDS 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
            C+LSLK++P IS+GISR +E+EE +        VA+P     + S+I+K ++ E+ VGD
Sbjct: 61  RCVLSLKSQPQISNGISRAKEVEEEIEPLIGRACVAEPWRFKSMSSRIIKRLRDEFEVGD 120

Query: 121 E-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
           E  VCLGGF+NVRAVY W GL LELDET + FGT+YEIECES EPER +KL+EG LEENG
Sbjct: 121 EGLVCLGGFRNVRAVYAWNGLNLELDETLFDFGTNYEIECESSEPERAKKLLEGFLEENG 180

Query: 180 IEYDFSDFSKFAVFRSGKL 198
           I +  ++ SKFAVFRSGKL
Sbjct: 181 ISFSNAEASKFAVFRSGKL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568939|ref|XP_003552665.1| PREDICTED: uncharacterized protein LOC100818552 [Glycine max]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 157/201 (78%), Gaps = 3/201 (1%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVE+KLRL DS  HQKLSN+L+P+H +TL QENIFFD  + +L+SN AVLR+RFY+L  
Sbjct: 1   MEVEIKLRLPDSATHQKLSNLLAPFHTKTLIQENIFFDGMNKELTSNLAVLRIRFYDL-E 59

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKP-QLLGQIDSKIMKMVKQEYGVG 119
           HC+LSLKAKP IS GISR++E EEP  +A     +A+P +LL    S+I+K V+ EY VG
Sbjct: 60  HCVLSLKAKPVISAGISRMEEHEEPFDVALGRACIAEPWRLLSVESSEILKRVRDEYRVG 119

Query: 120 DE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEEN 178
           +   VCLGGF+NVRAV++WKGLKLELDET Y FGT+YE+ECES +PER ++L+E  L+ N
Sbjct: 120 ENGVVCLGGFRNVRAVHQWKGLKLELDETNYDFGTNYELECESDDPERHKRLLEEFLQGN 179

Query: 179 GIEYDFSDFSKFAVFRSGKLP 199
           GI Y +S  SKFAVF+S KLP
Sbjct: 180 GINYSYSKLSKFAVFQSRKLP 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553297|ref|XP_002517691.1| adenylate cyclase, putative [Ricinus communis] gi|223543323|gb|EEF44855.1| adenylate cyclase, putative [Ricinus communis]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/202 (61%), Positives = 156/202 (77%), Gaps = 3/202 (1%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL +S AH+ LS ILSP+H +TL QEN+FFD   S+L+S+ A+LRLRFYN +S
Sbjct: 1   MEVEVKLRLPNSQAHENLSKILSPFHTKTLIQENVFFDTTKSQLTSSLAILRLRFYNQDS 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQID-SKIMKMVKQEYGV- 118
            C LSLK+KPTIS+GISRV E EE +         A+P  L  ++ S IM+ V++E+GV 
Sbjct: 61  QCFLSLKSKPTISNGISRVGEQEELIDPLIGRMCGAEPWRLRSLEGSTIMRRVREEFGVK 120

Query: 119 -GDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEE 177
             D FVCLGGFKNVR V++WKGLKLE+DE+ Y FGT YEIECES EP +D+KLIE LL +
Sbjct: 121 ENDGFVCLGGFKNVRQVFDWKGLKLEVDESIYDFGTCYEIECESKEPGKDKKLIEELLMD 180

Query: 178 NGIEYDFSDFSKFAVFRSGKLP 199
           NGIE+ +S+ +KFAVFRSGKLP
Sbjct: 181 NGIEFCYSEVNKFAVFRSGKLP 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306035016|gb|ADM83596.1| adenylate cyclase [Ipomoea nil]

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 153/201 (76%), Gaps = 2/201 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL DS +HQ+LS +LSPYH +T  QEN+FFD   ++LSSN AVLRLRFY+L+S
Sbjct: 1   MEVEVKLRLPDSASHQRLSTVLSPYHLKTHAQENVFFDGASAELSSNLAVLRLRFYDLDS 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQID-SKIMKMVKQEYGVG 119
            C++SLKAKP IS+GISR++E EE +         A+P  L  ID  +I++ VK EY +G
Sbjct: 61  RCVISLKAKPVISNGISRIEEDEEQLDPTIGRACAAEPWRLLLIDGCRIVERVKSEYEIG 120

Query: 120 DE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEEN 178
           ++  VCLGGF+N+R VYEWKGLKLE+DET Y FGT YEIECES EPE  + LIE LL  N
Sbjct: 121 EKGLVCLGGFRNLRGVYEWKGLKLEVDETHYDFGTGYEIECESSEPEIAKNLIEELLNSN 180

Query: 179 GIEYDFSDFSKFAVFRSGKLP 199
            I+Y +S+ SKFA+FRSGKLP
Sbjct: 181 EIQYSYSEVSKFAIFRSGKLP 201

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463589|ref|XP_002271437.1| PREDICTED: uncharacterized protein LOC100254954 [Vitis vinifera] gi|297743545|emb|CBI36412.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 157/199 (78%), Gaps = 1/199 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL D+ +HQKLS++L+P+H +TL QENIFFD   ++LSS  AVLRLRFY+L+S
Sbjct: 1   MEVEVKLRLPDAASHQKLSDLLAPFHVKTLIQENIFFDGSAAELSSKFAVLRLRFYDLDS 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
            C+LSLK++P IS+GISR +E+EE +        VA+P     ++S+I+K ++ E+ VGD
Sbjct: 61  RCVLSLKSQPQISNGISRAEEVEEEIEPLIGRACVAEPWRFKSMNSRIIKRLRDEFEVGD 120

Query: 121 E-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
           E  VCLGGF+NVRAVY W GL LELDET + FGT+YEIECESLEPER +KL+EG LEENG
Sbjct: 121 EGLVCLGGFRNVRAVYAWNGLNLELDETHFDFGTNYEIECESLEPERAKKLLEGFLEENG 180

Query: 180 IEYDFSDFSKFAVFRSGKL 198
           I +  ++ SKFAVFRSGKL
Sbjct: 181 ISFSNAEASKFAVFRSGKL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468946|ref|XP_004152182.1| PREDICTED: uncharacterized protein LOC101210314 [Cucumis sativus] gi|449513461|ref|XP_004164331.1| PREDICTED: uncharacterized LOC101210314 [Cucumis sativus]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 156/202 (77%), Gaps = 2/202 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVE+KLRL DS++H KLS++LS +H +T  Q N FFD  +++LSSN A LR+RFYN +S
Sbjct: 37  MEVEIKLRLPDSSSHHKLSHLLSSHHIKTHNQHNFFFDGPNAELSSNQAALRIRFYNEDS 96

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKP-QLLGQIDSKIMKMVKQEYGVG 119
           HC+LSLKAKPTISDGISR++E EE +  +     V +P +++   +SKI++ VK+EY + 
Sbjct: 97  HCVLSLKAKPTISDGISRIEEEEEALEPSIGRACVEEPNRMMLMEESKILERVKEEYRI- 155

Query: 120 DEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
           D FVCLGGFKNVR VY+WKGLKLELDET + FG +YE+ECES + ERDR L+EG  +ENG
Sbjct: 156 DGFVCLGGFKNVRRVYDWKGLKLELDETIFEFGRNYEMECESEDAERDRDLLEGFFKENG 215

Query: 180 IEYDFSDFSKFAVFRSGKLPGW 201
           I Y +S  SK A+FRSGKLP +
Sbjct: 216 ISYSYSQSSKLAIFRSGKLPPF 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446199|ref|XP_002263004.1| PREDICTED: uncharacterized protein LOC100260911 isoform 1 [Vitis vinifera]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 151/200 (75%), Gaps = 1/200 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVK+RL DS+ H+ +S +LS +H++T  Q+N+FFD    +LSS  AVLRLRFY  ++
Sbjct: 1   MEVEVKIRLPDSSTHRAVSALLSSFHRETQRQQNLFFDGAAGELSSRRAVLRLRFYGDDA 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVG- 119
            C++SLKAK  + +G+SRV+E EE +  +   + VA P  L ++DS+I++ V+ E+GVG 
Sbjct: 61  RCVVSLKAKAILVNGVSRVEEDEEEMEPSIGRDCVADPSKLSEVDSRILRRVRDEFGVGT 120

Query: 120 DEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
             FVCLGGFKNVR V+EWKGLKLELDET Y FGT +EIECES  PE  +++IEG L+ENG
Sbjct: 121 GGFVCLGGFKNVRDVFEWKGLKLELDETMYDFGTCFEIECESSNPEEAKQVIEGFLKENG 180

Query: 180 IEYDFSDFSKFAVFRSGKLP 199
           I Y  S+ SKFA+FRSGKLP
Sbjct: 181 ISYSDSEASKFAIFRSGKLP 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484679|ref|XP_003633145.1| PREDICTED: uncharacterized protein LOC100260911 isoform 2 [Vitis vinifera]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 153/205 (74%), Gaps = 1/205 (0%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVK+RL DS+ H+ +S +LS +H++T  Q+N+FFD    +LSS  AVLRLRFY  ++
Sbjct: 1   MEVEVKIRLPDSSTHRAVSALLSSFHRETQRQQNLFFDGAAGELSSRRAVLRLRFYGDDA 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVG- 119
            C++SLKAK  + +G+SRV+E EE +  +   + VA P  L ++DS+I++ V+ E+GVG 
Sbjct: 61  RCVVSLKAKAILVNGVSRVEEDEEEMEPSIGRDCVADPSKLSEVDSRILRRVRDEFGVGT 120

Query: 120 DEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
             FVCLGGFKNVR V+EWKGLKLELDET Y FGT +EIECES  PE  +++IEG L+ENG
Sbjct: 121 GGFVCLGGFKNVRDVFEWKGLKLELDETMYDFGTCFEIECESSNPEEAKQVIEGFLKENG 180

Query: 180 IEYDFSDFSKFAVFRSGKLPGWVKN 204
           I Y  S+ SKFA+FRSGKLP +  N
Sbjct: 181 ISYSDSEASKFAIFRSGKLPQFKGN 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562926|ref|XP_003549719.1| PREDICTED: uncharacterized protein LOC100789981 [Glycine max]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/199 (54%), Positives = 148/199 (74%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL D+ AH+ ++ +LSP+H  T  Q+N+FFD   S+LS+  AVLRLRFY  + 
Sbjct: 1   MEVEVKLRLADANAHRHVTTLLSPFHVITHRQQNLFFDGAASELSARRAVLRLRFYGDDE 60

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
            C+ SLKA+  + DG+SRV+E EE +  +   E VA+P  LG ++S+++K V++E+G   
Sbjct: 61  RCVASLKARAVLVDGVSRVEEDEEDLDPSIGRECVAEPAKLGSVESRVLKRVQEEFGTEK 120

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
             V LGGF N+R+VY+WKGLKLE+DET++ FGT YEIECES +PER ++L+E  L+EN I
Sbjct: 121 GLVGLGGFGNLRSVYDWKGLKLEVDETSFDFGTLYEIECESSDPERAKRLLEEFLKENEI 180

Query: 181 EYDFSDFSKFAVFRSGKLP 199
            Y +S  SKFA+FRSGKLP
Sbjct: 181 NYSYSTASKFAIFRSGKLP 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2045879	210	AT2G11890 [Arabidopsis thalian	0.975	0.947	0.519	1.1e-48

TAIR|locus:2045879 AT2G11890 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 109/210 (51%), Positives = 135/210 (64%)

Query:     1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
             MEVEVKLRL  + AH +L+ +L+PYH +TL Q N FFD   + LS   AVLRLRF    +
Sbjct:     1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60

Query:    61 ---------HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKM 111
                       CI+SLKAKPT+++GISRV+E EE +      E V  P  L  I S+++K 
Sbjct:    61 VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120

Query:   112 VKQEYGVGD--EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRK 169
             VK+EYG  D   FVCLGGF+NVR VYEW+G+KLE+DET Y FG  YEIECE+ EPER + 
Sbjct:   121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180

Query:   170 XXXXXXXXXXXXYDFSDFSKFAVFRSGKLP 199
                         +  SD +KFAVFRSGKLP
Sbjct:   181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       192   0.00096  110 3  11 22  0.48    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  162 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.28u 0.10s 18.38t   Elapsed:  00:00:01
  Total cpu time:  18.28u 0.10s 18.38t   Elapsed:  00:00:01
  Start:  Fri May 10 13:23:03 2013   End:  Fri May 10 13:23:04 2013

GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1.28	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd07374	174	cd07374, CYTH-like_Pase, CYTH-like (also known as	2e-24
cd07762	180	cd07762, CYTH-like_Pase_1, Uncharacterized subgrou	5e-13
pfam01928	175	pfam01928, CYTH, CYTH domain	5e-11
cd07890	169	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (A	4e-06
COG3025	432	COG3025, COG3025, Uncharacterized conserved protei	5e-06
COG4116	193	COG4116, COG4116, Uncharacterized protein conserve	2e-04
cd07756	197	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subg	6e-04

>gnl|CDD|143620 cd07374, CYTH-like_Pase, CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 46/181 (25%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 2   EVEVKLRLKDSTAHQKLSNI---LSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNL 58
           EVE K R+ D      L  +   L     +T+    I+FD  D +L+   A LRLR    
Sbjct: 1   EVERKFRVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPDLRLA--RAGLRLRRRTG 58

Query: 59  NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGV 118
            +     LK        ISR  E+  P+  A A   +        + +            
Sbjct: 59  GADAGWHLKLPGG----ISRRTEVRAPLGDAAAVAPLLLA--AALVLAVTR--------- 103

Query: 119 GDEFVCLGGFKNVRAVYEW---KGLKLELDETTY------GFGTSYEIECESLEPERDRK 169
           G     +   +  R VY      G+  ELD  T       G GT Y  E E   P+ D  
Sbjct: 104 GLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQYWREVEVELPDGDEA 163

Query: 170 L 170
           L
Sbjct: 164 L 164

CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Length = 174

>gnl|CDD|143627 cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 18/194 (9%)

Query: 2   EVEVKLRLKDSTAHQKLSNILSPYHKQTLF-QENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           E+E K  L      Q    + + +  +  F Q N +FD  D  L    + LR+R      
Sbjct: 2   EIEFKNLLTKEEYEQ----LKNAFDLKDFFKQTNYYFDTPDFALKKKHSALRIREKE--G 55

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLL-GQIDSKIMKMVKQEYGVG 119
              L+LK    +      + E  +P+ L  A + +    L  G+I  K+ ++        
Sbjct: 56  KAELTLKVPQEVG-----LLETNQPLTLEEAEKLIKGGTLPEGEILDKLKEL----GIDP 106

Query: 120 DEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENG 179
            E    G    +RA   ++G  L LD + Y   T YE+E E  + E  +K    LL++  
Sbjct: 107 SELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYN 166

Query: 180 IEYDFSDFSKFAVF 193
           I Y  +  +K A F
Sbjct: 167 IPYRPAK-NKIARF 179

Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized. Length = 180

>gnl|CDD|216793 pfam01928, CYTH, CYTH domain

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 2   EVEVKLRLKDSTAHQKLS-NILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           E+E K  + D      L    L    ++   Q +I+FD  D  L+     LR+R +  N 
Sbjct: 1   EIERKFLVPDEEYRDLLKLEKLRGKAEKPEEQRDIYFDTPDRDLAKTDEALRIRIFG-NG 59

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
              L+LK         SR    E    L+ A +++     LG                  
Sbjct: 60  AYFLTLKGPKVDGPFKSR---EEVEGELSDAEDALELLDGLG------------------ 98

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
               +G  K +R  Y+ KG+ + LDE  +  G   E+E E  + E   +  E L     +
Sbjct: 99  -LKPVGSIKKLRRRYKVKGVGVALDEVEFLGGAFVELELEVEDEEELLEAAEELELLRIL 157

Query: 181 EYDFSDFSKFAVF 193
               S+ SK A F
Sbjct: 158 GL--SEESKVARF 168

These sequences are functionally identified as members of the adenylate cyclase family, which catalyzes the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of three classes of adenylyl cyclases have been solved. Length = 175

>gnl|CDD|143628 cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 25/183 (13%)

Query: 2   EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSH 61
           EVE+K R+ D  A ++    L        FQE+I+FD  D  L++    LRLR    +  
Sbjct: 1   EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGK 60

Query: 62  CILSLKAKPTISDGISRV-QELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
            +L+ K      DG  +V +E+E  V    A + + +   LG                  
Sbjct: 61  TLLTYKGPK--LDGGPKVREEIETEVADPEAMKEILE--RLG------------------ 98

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
            F  +G  K  R +Y     ++ LD    G G   EIE    + E   + +    E  G+
Sbjct: 99  -FGPVGRVKKEREIYLLGQTRVHLDR-VEGLGDFVEIEVVLEDIEEAEEGLGEAAELLGL 156

Query: 181 EYD 183
              
Sbjct: 157 LEY 159

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cellular processes. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. Length = 169

>gnl|CDD|225569 COG3025, COG3025, Uncharacterized conserved protein [Function unknown]

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 45/204 (22%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPY--HKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNL 58
            E+E+K  +    A   LS +              NI++D  D+ L  +   LR+R    
Sbjct: 3   QEIELKFLVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIRRE-- 60

Query: 59  NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGV 118
                 +LK    +  G+ +  E   P+P  T         L      +    +     +
Sbjct: 61  GGQYEQTLKTAGGVVGGLHQRPEYNVPLPEDT-------LDLAELPRDRWPAGIF-PLDL 112

Query: 119 GDEFVCL--GGFKNVRAVYEWKGLKLE--LDETTYGFGTSYEIECESLEPERDR------ 168
           G E   L    FK  + +    G  +E  LD+     G   E  CE LE E         
Sbjct: 113 GSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICE-LELELKSGTPQAL 171

Query: 169 -KLIEGLLEENGIEYDFSDFSKFA 191
             L   L E  G+    S  SK  
Sbjct: 172 LALARTLAENTGLR--LSSLSKAE 193

Length = 432

>gnl|CDD|226601 COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 15/196 (7%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQT--LFQENIFFDDKDSKLSSNAAVLRLRFYNL 58
           M  E+++  K     ++ + ++S +      + Q N + D  D KL    + LR+R    
Sbjct: 1   MSTELEIEFKTLLTKEEYNRLISQFTIVEPDVLQTNHYIDTDDFKLKEKKSALRIR--TK 58

Query: 59  NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGV 118
            +   L+LK         ++V  LE    L+     +A       +    +  + ++ G+
Sbjct: 59  ENQYELTLKVP-------AKVGLLEYNQILSLEEAKLALIS--ANLPEGEVLDILEKLGI 109

Query: 119 GDE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEE 177
            D      G    +RA  +++   L LD++ Y     YE+E E  + E+ ++  + LL+E
Sbjct: 110 KDSALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEFEVSDYEQGKQDFQKLLKE 169

Query: 178 NGIEYDFSDFSKFAVF 193
             IE   +  +K   F
Sbjct: 170 FSIEQHPAK-NKVQRF 184

Length = 193

>gnl|CDD|143624 cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 2  EVEVKLRLKDSTAHQKL-SNILSPYHK---QTLFQENIFFDDKDSKLSSNAAVLRLRFYN 57
          E+E+KL L            +L+       QT    N +FD  D  L      LR+R   
Sbjct: 1  EIELKLLLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVR--R 58

Query: 58 LNSHCILSLKAKPTISDGISRVQELEEPVP 87
               + +LK   ++  G+ +  E E P+P
Sbjct: 59 EGGQWVQTLKTAGSVVGGLHQRPEWEVPLP 88

This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
cd07762	180	CYTH-like_Pase_1 Uncharacterized subgroup 1 of the	100.0
cd07756	197	CYTH-like_Pase_CHAD Uncharacterized subgroup of th	100.0
COG4116	193	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3025	432	Uncharacterized conserved protein [Function unknow	100.0
cd07374	174	CYTH-like_Pase CYTH-like (also known as triphospha	99.95
cd07890	169	CYTH-like_AC_IV-like Adenylyl cyclase (AC) class I	99.94
PF01928	185	CYTH: CYTH domain; InterPro: IPR008172 The CYTH do	99.93
cd07758	196	ThTPase Thiamine Triphosphatase. ThTPase is a solu	99.93
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	99.91
COG1437	178	CyaB Adenylate cyclase, class 2 (thermophilic) [Nu	99.88
cd07750	214	PolyPPase_VTC_like Polyphosphate(polyP) polymerase	99.61
cd07761	146	CYTH-like_CthTTM-like Clostridium thermocellum (Ct	99.28
cd07891	148	CYTH-like_CthTTM-like_1 CYTH-like Clostridium ther	99.11
cd07751	290	PolyPPase_VTC4_like Polyphosphate(polyP) polymeras	99.0
COG2954	156	Uncharacterized protein conserved in bacteria [Fun	98.89
PLN02318	656	phosphoribulokinase/uridine kinase	98.65
PF09359	283	VTC: VTC domain; InterPro: IPR018966 This presumed	98.58
cd07892	303	PolyPPase_VTC2-3_like Polyphosphate(polyP) polymer	98.09

>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily

Probab=100.00  E-value=3.7e-39  Score=254.32  Aligned_cols=179  Identities=27%  Similarity=0.335  Sum_probs=157.8

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||+|+ +++++.+.++.+++..  .....|+|+|||||+++|++++++||||..  |++|+||+|+|+.     +.|.
T Consensus         1 iEiE~K~-~l~~~~~~~l~~~~~~--~~~~~q~n~Yfdtp~~~l~~~~~aLRiR~~--~~~~~~TlK~~~~-----~~r~   70 (180)
T cd07762           1 LEIEFKN-LLTKEEYEQLKNAFDL--KDFFKQTNYYFDTPDFALKKKHSALRIREK--EGKAELTLKVPQE-----VGLL   70 (180)
T ss_pred             CcEEEEe-cCCHHHHHHHHHhccc--CCcEEEEEEEEeCCCHHHHhCCcEEEEEee--CCeEEEEEeeCCC-----CCCc
Confidence            6999999 8999999999988544  456889999999999999999999999998  6799999999874     2356


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCC-ceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD-EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~-~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      |||.+|+.++++.++.. ..+|   ++.+..++..+|+.+ .+.++++++|.|+++.+++++||||++.|.+..++|||+
T Consensus        71 E~e~~l~~~~~~~~~~~-~~~~---~~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~  146 (180)
T cd07762          71 ETNQPLTLEEAEKLIKG-GTLP---EGEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEY  146 (180)
T ss_pred             EEeecCCHHHHHHHhcc-ccCC---chHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEE
Confidence            99999998888888875 3343   456778889999864 599999999999999999999999999999877899999


Q ss_pred             EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHH
Q 041449          160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFR  194 (204)
Q Consensus       160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~  194 (204)
                      |+.+++.+...|.++++++||+++++ .||++||+
T Consensus       147 e~~~~~~~~~~~~~ll~~~gi~~~~~-~sKi~R~~  180 (180)
T cd07762         147 EVDDYEAGKKAFLELLKQYNIPYRPA-KNKIARFL  180 (180)
T ss_pred             EeCCHHHHHHHHHHHHHHcCCCcccC-cchhheeC
Confidence            99998888999999999999999887 79999985

Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup

>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain

Probab=100.00  E-value=8.3e-37  Score=243.91  Aligned_cols=181  Identities=23%  Similarity=0.227  Sum_probs=140.2

Q ss_pred             eeEeeccCCCHHHHHHHHHhhCC--CC---CcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCc
Q 041449            2 EVEVKLRLKDSTAHQKLSNILSP--YH---KQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGI   76 (204)
Q Consensus         2 EiElK~~~~~~~~~~~l~~~l~~--~~---~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl   76 (204)
                      |||+|| .++++.+..|.++...  ..   ....+|+|+||||||++|++++++||||+.  |++|+||+|+++...+|+
T Consensus         1 EiElKl-~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~YfDTpd~~L~~~~~aLRiR~~--~~~~~~TlK~~~~~~~g~   77 (197)
T cd07756           1 EIELKL-LLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVRRE--GGQWVQTLKTAGSVVGGL   77 (197)
T ss_pred             CeeEee-cCCHHHHHHHHhchhhhccccCCcceeeeeeeeeeCcChHHHhCCCEEEEEee--CCeEEEEEeeCCcCCCCc
Confidence            899999 9999999999887332  11   246789999999999999999999999998  578999999998777888


Q ss_pred             eeeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCC----eEEEecceecCCc
Q 041449           77 SRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKG----LKLELDETTYGFG  152 (204)
Q Consensus        77 ~~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~----~el~lD~~~~~~~  152 (204)
                      +.|.|||.+|+++.++..+.  ..+|.  ......+    +....|.|++++.+.|..|.+..    +|||+|.|.+.++
T Consensus        78 ~~R~E~e~~l~~~~~~l~~~--~~~~~--~~~~~~l----~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~  149 (197)
T cd07756          78 HQRPEWEVPLPGPAPDLDLA--SILPD--GELLEAL----AALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAG  149 (197)
T ss_pred             ccceeEcccCCCCCcCcchh--hcCCc--ccCHhhh----hccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeC
Confidence            88899999999876543221  11221  1122222    11124899999999999998743    8999999987655


Q ss_pred             c----eeEEEEEecCcc--hHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449          153 T----SYEIECESLEPE--RDRKLIEGLLEENGIEYDFSDFSKFAVFRS  195 (204)
Q Consensus       153 ~----~~EiElEl~~g~--~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~  195 (204)
                      .    .||||+|+++|+  +++.++..++...  +++++..|||+|+|.
T Consensus       150 ~~~~~i~EiElELk~G~~~~L~~la~~l~~~~--~l~~~~~SKa~rG~~  196 (197)
T cd07756         150 DRSEPICEIELELKSGDPAALFALARRLAERL--PLRLSNRSKAERGYR  196 (197)
T ss_pred             CCccceEeEEEEecCCCHHHHHHHHHHHHHhC--CccCCCcCHHHhccc
Confidence            4    499999999985  5577778888766  566777999999874

This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp

>COG4116 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=3.4e-37  Score=234.41  Aligned_cols=182  Identities=24%  Similarity=0.314  Sum_probs=162.7

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||+|- +++.+.|.+|...+...... ..|+|+||||||+.|+++++|||||..  .+++++|||.|..+  |+  + 
T Consensus         5 lEIE~Kt-lltk~ey~rL~~~~~~~~~d-~~QtN~YiDT~dF~LKek~~ALRIR~~--e~~~elTLK~P~~v--Gl--l-   75 (193)
T COG4116           5 LEIEFKT-LLTKEEYNRLISQFTIVEPD-VLQTNHYIDTDDFKLKEKKSALRIRTK--ENQYELTLKVPAKV--GL--L-   75 (193)
T ss_pred             hhhHHHH-HhhHHHHHHHHHHhccCCCc-ceeeeeeecCcchhhhhhhcceeEEee--cceEEEEecCchhc--Cc--h-
Confidence            5999998 99999999999998653332 889999999999999999999999999  57999999999987  86  4 


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCc-eEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~-l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      |++.+++.+++..++.. .++|   ...+..++..+||.+. +..++++.|.|.+..++.|.+|||.+.|.+..+||||+
T Consensus        76 Eynq~Ls~e~a~~~l~~-~~~P---~g~v~d~l~~~gI~~~~l~~~GsLtT~R~E~~~~~Gll~LD~s~Y~~~~DYElE~  151 (193)
T COG4116          76 EYNQILSLEEAKLALIS-ANLP---EGEVLDILEKLGIKDSALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEF  151 (193)
T ss_pred             hhcccccHHHHHHHhhc-cCCC---ccHHHHHHHHcCCCHHHHHhhhhhhhhhhhhhccCceEEEchhhhCCccceeEEE
Confidence            99999999888888874 5675   4556667788899765 99999999999999999999999999999999999999


Q ss_pred             EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHhc
Q 041449          160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSG  196 (204)
Q Consensus       160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~  196 (204)
                      |+.+.+.+...|..+|+.+.|+.++. .||.+||+.-
T Consensus       152 Ev~d~~qGk~~F~~~L~e~~I~~~~a-~nKv~RF~~~  187 (193)
T COG4116         152 EVSDYEQGKQDFQKLLKEFSIEQHPA-KNKVQRFFKK  187 (193)
T ss_pred             EeccHHHhHHHHHHHHHHcCcccccc-HHHHHHHHHH
Confidence            99999999999999999999999985 6999999863

>COG3025 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.1e-37  Score=261.98  Aligned_cols=182  Identities=23%  Similarity=0.212  Sum_probs=138.5

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCC---CCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPY---HKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS   77 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~---~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~   77 (204)
                      ||||+|| +++++....+.+.+...   ...+..+.|+||||||+.|++++|+||||+.  +++|+||+|+.|.+.+|+|
T Consensus         3 ~EIELKf-~Vs~~aa~~l~~~L~~~~~~~~~~~~L~n~YyDTpd~~L~~~~~gLRIR~~--~~~y~~TlKtaG~v~gGlH   79 (432)
T COG3025           3 QEIELKF-LVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIRRE--GGQYEQTLKTAGGVVGGLH   79 (432)
T ss_pred             cchhhhe-ecCHHHHHHHHHHhhhcccCCcchhhHhhhhcCCchHHHHhCCceEEEecc--CCeEEEEEEecCccccccc
Confidence            6999999 99999988888886653   3456778999999999999999999999999  6789999999999999999


Q ss_pred             eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEE--EEEEeCC--eEEEecceecCCcc
Q 041449           78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVR--AVYEWKG--LKLELDETTYGFGT  153 (204)
Q Consensus        78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R--~~~~~~~--~el~lD~~~~~~~~  153 (204)
                      +|+|||++++++.++. ..    +   |...+..-.........|.|+++.+..|  |.+.+++  +||+||.|.+.+|+
T Consensus        80 ~RpEyn~~L~~~~~~~-~~----~---p~~~~p~~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age  151 (432)
T COG3025          80 QRPEYNVPLPEDTLDL-AE----L---PRDRWPAGIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGE  151 (432)
T ss_pred             cCccccccCCCCCcch-hh----C---hhhhcccccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCc
Confidence            9999999999987652 11    2   1222211110111133488876665544  5555654  89999999988876


Q ss_pred             ----eeEEEEEecCcc--hHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449          154 ----SYEIECESLEPE--RDRKLIEGLLEENGIEYDFSDFSKFAVFRS  195 (204)
Q Consensus       154 ----~~EiElEl~~g~--~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~  195 (204)
                          .||||+|+|+|.  ++..+...++...  +++.+..|||+|+|.
T Consensus       152 ~q~picElElELKsG~~~aL~~la~~L~~~~--~l~~s~lSKAeRGY~  197 (432)
T COG3025         152 RQEPICELELELKSGTPQALLALARTLAENT--GLRLSSLSKAERGYR  197 (432)
T ss_pred             ccCchhheehhhhcCCHHHHHHHHHHHHHhC--Cccccchhhhhhccc
Confidence                399999999995  4566667777666  455566999999883

>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases

Probab=99.95  E-value=8.4e-27  Score=182.90  Aligned_cols=147  Identities=27%  Similarity=0.226  Sum_probs=109.9

Q ss_pred             eeEeeccCCCHHHHHHHHHh----hCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449            2 EVEVKLRLKDSTAHQKLSNI----LSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS   77 (204)
Q Consensus         2 EiElK~~~~~~~~~~~l~~~----l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~   77 (204)
                      |||+|| .++++.+.++..+    ++.......+|.|+||||||++|.++++.||+|..  +++|.||+|+++..    +
T Consensus         1 EiElK~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~YfDT~d~~l~~~~lrlR~r~~--~~~~~~TlK~~~~~----~   73 (174)
T cd07374           1 EVERKF-RVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPDLRLARAGLRLRRRTG--GADAGWHLKLPGGI----S   73 (174)
T ss_pred             CeeEEE-cCChHHhhHHHhhchhhcccccccceeeeeeEecCccchhhhCCcEEEEEcC--CCccEEEEEccCCC----C
Confidence            899999 8999999888864    23233456789999999999999998888888765  57899999998753    5


Q ss_pred             eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC-----CeEEEecceecCCc
Q 041449           78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK-----GLKLELDETTYGFG  152 (204)
Q Consensus        78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~-----~~el~lD~~~~~~~  152 (204)
                      ++.|||.+|++..++..+.     +  +......++.    ...|.|++++.+.|..|.+.     .++||||.+.+.++
T Consensus        74 ~r~E~e~~l~~~~~~~~~~-----~--~~~~~~~~~~----~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~  142 (174)
T cd07374          74 RRTEVRAPLGDAAAVAPLL-----L--AAALVLAVTR----GLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVL  142 (174)
T ss_pred             CceEEEeecCCccCCcccc-----c--chhheeeecC----CCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEc
Confidence            5779999998876543221     1  0001111111    12399999999999999886     38999999998533


Q ss_pred             ----ceeEEEEEecCcch
Q 041449          153 ----TSYEIECESLEPER  166 (204)
Q Consensus       153 ----~~~EiElEl~~g~~  166 (204)
                          ..||||+|++.|+.
T Consensus       143 ~~~~~~~e~E~El~~~~~  160 (174)
T cd07374         143 DGGGTQYWREVEVELPDG  160 (174)
T ss_pred             CCCcceEEEEEEEEEcCC
Confidence                46999999988854

CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.

>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

Probab=99.94  E-value=7.3e-25  Score=171.31  Aligned_cols=159  Identities=27%  Similarity=0.297  Sum_probs=130.4

Q ss_pred             eeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeeeE
Q 041449            2 EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQE   81 (204)
Q Consensus         2 EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~E   81 (204)
                      |||+|+++.+++.+..++..++........|+|+|||||+++|++++.+||||..++.+++++|+|++... ++++.+.|
T Consensus         1 EvEiK~~v~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~-~~~~~~~E   79 (169)
T cd07890           1 EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLD-GGPKVREE   79 (169)
T ss_pred             CEEEEEEeCCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCC-CCccceEE
Confidence            89999965568888887777655555678999999999999999999999999984336899999998764 23656679


Q ss_pred             eeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEEe
Q 041449           82 LEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECES  161 (204)
Q Consensus        82 ~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElEl  161 (204)
                      |+.++++.                 ..+..+|..+|    +.+++.+.+.|..|.++++.|+||..... |.+.|||+..
T Consensus        80 ~e~~v~~~-----------------~~~~~iL~~lg----~~~~~~~~K~R~~~~~~~~~v~lD~~~~l-G~f~EiE~~~  137 (169)
T cd07890          80 IETEVADP-----------------EAMKEILERLG----FGPVGRVKKEREIYLLGQTRVHLDRVEGL-GDFVEIEVVL  137 (169)
T ss_pred             EEEecCCH-----------------HHHHHHHHHcC----CceeEEEEEEEEEEEECCEEEEEEccCCC-CceEEEEEEe
Confidence            99998532                 34556788887    68889999999999999999999998754 4588999988


Q ss_pred             cCcchHHHHHHHHHHhCCCccc
Q 041449          162 LEPERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       162 ~~g~~~~~~~~~~l~~~~i~~~  183 (204)
                      .+.+.+...+..++..+|+...
T Consensus       138 ~~~~~~~~~l~~~~~~lg~~~~  159 (169)
T cd07890         138 EDIEEAEEGLGEAAELLGLLEY  159 (169)
T ss_pred             CCcHHHHHHHHHHHHHcCCCcc
Confidence            8877778888999999998763

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel

>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []

Probab=99.93  E-value=1.4e-25  Score=177.09  Aligned_cols=176  Identities=27%  Similarity=0.324  Sum_probs=124.7

Q ss_pred             CeeEeeccCCCHHHHHHHH---HhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449            1 MEVEVKLRLKDSTAHQKLS---NILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS   77 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~---~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~   77 (204)
                      +|||+|+ .+++.++.+|.   ..+........+|+|+|||||+++|.+++++||||..+ +++|.+|+|.++..  |- 
T Consensus         2 ~EiE~K~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~-~~~~~lTlK~~~~~--~~-   76 (185)
T PF01928_consen    2 IEIEIKF-LVPESDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRREN-GDGWYLTLKGPGSD--GP-   76 (185)
T ss_dssp             EEEEEEE-EESHHHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEET-TTEEEEEEEEESSS--SS-
T ss_pred             EEEEEEE-EcCHHHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeec-CCccEEEEEccCcc--Cc-
Confidence            4999999 78788888763   33444455678899999999999999999999999763 35677999999864  21 


Q ss_pred             eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEE
Q 041449           78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEI  157 (204)
Q Consensus        78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~Ei  157 (204)
                       +.|++..++.++....+.        +.+.+..++..++    +.+++.+.+.|+.|.+++++|++|.+.+..+.++||
T Consensus        77 -~~e~~~~~~r~e~e~~i~--------~~~~~~~~l~~l~----l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~Ei  143 (185)
T PF01928_consen   77 -REEIEFEVSREEYEAPIS--------DAEEMREILEALG----LRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEI  143 (185)
T ss_dssp             -EEEEEEEESHHCCEEEHS--------HHHHHHHHHHHTT----CEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred             -ccccceeecchhhhcccc--------chHHHHHHHHHhc----CceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEE
Confidence             235555554332211111        1234566777776    899999999999999999999999998886667777


Q ss_pred             EEEecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449          158 ECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRS  195 (204)
Q Consensus       158 ElEl~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~  195 (204)
                      |++..+...+...+..++...+ .+..+..||+.|+|.
T Consensus       144 E~~~~~~~~~~~~~~~i~~~~~-~l~~~~~s~~~r~y~  180 (185)
T PF01928_consen  144 EIESEDEEDLKEAAEEILALLN-ELGISENSKIERSYL  180 (185)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHH-HTTEEGGGBHHSHHH
T ss_pred             EEcCCCHhHHHHHHHHHHHHhh-hcCCCccchHHHHHH
Confidence            7777666665555555443211 222334799999874

It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....

>cd07758 ThTPase Thiamine Triphosphatase

Probab=99.93  E-value=4.6e-24  Score=170.47  Aligned_cols=166  Identities=20%  Similarity=0.224  Sum_probs=119.8

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCC--CCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcc--cCCc
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSP--YHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTI--SDGI   76 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~--~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~--~~gl   76 (204)
                      ||||+|| .++++...+|. .++.  .......++|+|||||+++|++++++||||.    ..|.+|+|.++..  .++.
T Consensus         1 ~EVE~Kf-~~~~~~~~~L~-~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~----~~~~lk~~~~~~~~~~~~~   74 (196)
T cd07758           1 LEVERKF-RCGPSAEERLR-KLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRN----GQWELKIPPGGDPPTAGAN   74 (196)
T ss_pred             CcEEEEe-cCCHHHHHHHH-hccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEEC----CeEEEEecCCCCCCCCCCc
Confidence            7999999 67755444554 4554  4557789999999999999999999999994    2687777765431  1234


Q ss_pred             eeeeEeeecCCchhhhhhhhC--CCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC-CeEEEecceecCCcc
Q 041449           77 SRVQELEEPVPLATATESVAK--PQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK-GLKLELDETTYGFGT  153 (204)
Q Consensus        77 ~~~~E~e~~l~~~~~~~~l~~--~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~-~~el~lD~~~~~~~~  153 (204)
                      .++.|.+..+   +....+..  ...+|.  ...+..++..+|    +.++++++|.|..|.++ ++.|+||.+.++ ..
T Consensus        75 ~~~~E~~~~~---~~~~~v~~~~~~~~~~--~~~~~~~L~~lg----f~~~~~~~k~R~~y~~~~g~~v~LD~~~~G-~~  144 (196)
T cd07758          75 TRYEELTGEA---AIAAALRKLLGGALPS--AGGLGDELANLG----LREFASFVTKRESWKLDGAFRVDLDRTDFG-YS  144 (196)
T ss_pred             ceEEecccHH---HHHHHHHHhcCCCCCc--chhHHHHHhhCC----CeEEEEEEEEEEEEEcCCCcEEEEecccCC-cc
Confidence            4444555443   22222220  011221  234667778777    89999999999999999 679999999866 44


Q ss_pred             eeEEEEEecC---c---chHHHHHHHHHHhCCCcc
Q 041449          154 SYEIECESLE---P---ERDRKLIEGLLEENGIEY  182 (204)
Q Consensus       154 ~~EiElEl~~---g---~~~~~~~~~~l~~~~i~~  182 (204)
                      ++|||+|+.+   .   +.+.+.+..+++++|+.+
T Consensus       145 ~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~  179 (196)
T cd07758         145 VGEVELLVEEEDNEAEVPAALAKIDELISALMERY  179 (196)
T ss_pred             eEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCc
Confidence            8999999877   3   356778899999999988

ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=99.91  E-value=8.9e-23  Score=160.27  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=125.0

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||+|+++.+.+.+...+..++........|+|+|||+|+++|...+.+||||+.  ++.+.+|+|+|+.. ++...+.
T Consensus         2 ~EvE~K~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~--~~~~~lT~Kgp~~~-~~~~~~~   78 (174)
T TIGR00318         2 IEVEVKAKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKL--TGEKFVTYKGPKID-NESKTRK   78 (174)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEc--CCcEEEEEeCCccC-CcceEEE
Confidence            49999996567777766555555555667889999999999999999999999998  46899999998753 3444467


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      |++..|++.                 +.+..++..+|    +.++..+.+.|..|.+++..|+||..... |.+.|||.-
T Consensus        79 E~e~~v~d~-----------------~~~~~iL~~LG----~~~~~~v~K~R~~~~l~~~~i~lD~v~~l-G~FvEIE~~  136 (174)
T TIGR00318        79 EIEFKIEDI-----------------ENALQILKKLG----FKKVYEVIKKRRIYQTNELNVSIDDVEGL-GFFLEIEKI  136 (174)
T ss_pred             EEEEEECCH-----------------HHHHHHHHHCC----CeEEEEEEEEEEEEEECCEEEEEEccCCC-ccEEEEEEe
Confidence            999998443                 34566788888    78999999999999999999999976643 466777776


Q ss_pred             ecCc---chHHHHHHHHHHhCCCcccc
Q 041449          161 SLEP---ERDRKLIEGLLEENGIEYDF  184 (204)
Q Consensus       161 l~~g---~~~~~~~~~~l~~~~i~~~~  184 (204)
                      ..+.   +.+...+..+++++|++...
T Consensus       137 ~~~~~~~~~~~~~i~~~~~~LGl~~~~  163 (174)
T TIGR00318       137 INNINDKDLALEEIFEIINQLGIKDNI  163 (174)
T ss_pred             cCCccchHHHHHHHHHHHHHcCCCcCc
Confidence            6543   45677889999999994444

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]

Probab=99.88  E-value=9.9e-21  Score=146.38  Aligned_cols=158  Identities=23%  Similarity=0.291  Sum_probs=129.0

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|+|+|++.-+.+.....+..++..+.....|+|+|||.|.++|+.++.+||||..+ ++...+|+|+|..... ...|.
T Consensus         2 ~EVEvK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~-~~~~~lTYKgp~ld~~-~k~r~   79 (178)
T COG1437           2 YEVEVKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRIN-GGEVFLTYKGPKLDRE-SKTRE   79 (178)
T ss_pred             eeEEEEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEec-CCcEEEEEeccccccc-cccee
Confidence            599999954367888877777777778889999999999999999999999999554 4789999999986422 23467


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      |++..+++.                 +....+++.+|    |.+++.+.+.|+.|...+..|+||.++.. |.+.|||.+
T Consensus        80 E~E~~v~D~-----------------~~~~~il~~LG----F~~~~~VkK~R~iY~~~~~~i~lD~VegL-G~F~EIE~~  137 (178)
T COG1437          80 EIEIEVSDV-----------------EKALEILKRLG----FKEVAVVKKTREIYKVGNVTIELDAVEGL-GDFLEIEVM  137 (178)
T ss_pred             eEEEEeCCH-----------------HHHHHHHHHcC----CceeeEEEEEEEEEeeCCEEEEEecccCC-cccEEEEEe
Confidence            999988532                 24556888888    78999999999999999999999998764 467999999


Q ss_pred             ecCcch---HHHHHHHHHHhCCCcc
Q 041449          161 SLEPER---DRKLIEGLLEENGIEY  182 (204)
Q Consensus       161 l~~g~~---~~~~~~~~l~~~~i~~  182 (204)
                      +.+.++   +...+.+++.++|+..
T Consensus       138 ~~d~~e~~~~~~~~~~i~~~lGl~~  162 (178)
T COG1437         138 VDDENEIDGAKEEIEEIARQLGLKE  162 (178)
T ss_pred             cCCchhhHHHHHHHHHHHHHhCCCh
Confidence            988753   4567899999999963

>cd07750 PolyPPase_VTC_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins

Probab=99.61  E-value=3e-14  Score=115.37  Aligned_cols=179  Identities=17%  Similarity=0.131  Sum_probs=117.3

Q ss_pred             eEeeccCCCHHHHHHHHHhhCCC-----CC--cceeEeeeeeeCCChhh-hhcCe------eeEEEEecC-CCeEEEEEc
Q 041449            3 VEVKLRLKDSTAHQKLSNILSPY-----HK--QTLFQENIFFDDKDSKL-SSNAA------VLRLRFYNL-NSHCILSLK   67 (204)
Q Consensus         3 iElK~~~~~~~~~~~l~~~l~~~-----~~--~~~~q~n~YfDTpd~~L-~~~~~------~LRiR~~~~-~~~~~~TlK   67 (204)
                      +|+|+ +++++++..|.+.+...     ..  ......|+|||||+++| ..+..      .+|+|.+++ .+...+.+|
T Consensus         2 ~E~Ky-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~i~s~YfDt~~~~ly~~~~~g~~~r~K~R~R~Y~~~~~~~flE~K   80 (214)
T cd07750           2 YERKY-LVPASQLEALLAALKPHLRVDEYAGNRDYTIRSLYFDTPDLDLYREKLNGRRRREKVRIRSYGDSDGLIFLEVK   80 (214)
T ss_pred             ceEEE-EeCHHHHHHHHHHHHhHCCCCCCCCCCCceEEEEEecCCcHHHHHHHhcCcCccceEEEEEcCCCCCcEEEEEE
Confidence            69999 99999998888775431     11  25678999999999999 44444      499999987 667899999


Q ss_pred             cCCcccCCceeeeEeeecCCchhhhhhhhCCCccCCccHH-HHHHHHHHcCCCCceEEEeeeEEEEEEEEe--CCeEEEe
Q 041449           68 AKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSK-IMKMVKQEYGVGDEFVCLGGFKNVRAVYEW--KGLKLEL  144 (204)
Q Consensus        68 ~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~-~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~--~~~el~l  144 (204)
                      ....   +..  .....+++...+..++.....+...... ....+.. ......|.|+..+.-.|..|..  .+..|++
T Consensus        81 ~k~~---~~~--~K~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~P~~~~~Y~R~a~~~~~~~~RiT~  154 (214)
T cd07750          81 TKRG---RVT--YKRRLPLSPEDAERLLAGGYFFLLESQDPLAEEFYF-RMRYKQLRPVLLVSYRREALVSPDGGVRITF  154 (214)
T ss_pred             EEEC---CEE--EEEEecCCHHHHHHHHcCCCccccccchhHHHHHHH-HHhcCCCCceEEEEEeeEEeecCCCCEEEEE
Confidence            7764   321  1444788877766666542222110000 0111111 1112237777666666766654  3589999


Q ss_pred             cceecCC---------------cceeEEEEEecCcchHHHHHHHHHHhCCCccccCCCCHH
Q 041449          145 DETTYGF---------------GTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKF  190 (204)
Q Consensus       145 D~~~~~~---------------~~~~EiElEl~~g~~~~~~~~~~l~~~~i~~~~~~~SK~  190 (204)
                      |.+....               ...++++||+|.+.....++..++...++.  +...||+
T Consensus       155 D~~l~~~~~~~~~~~~~~~~~~~~~~~viLElK~~~~~p~~~~~ll~~~~l~--~~~~SKY  213 (214)
T cd07750         155 DTNLRYRDEDGDLFSGNLGTPILPPDLVILEVKYDGALPLWLADLLSSHGLE--PTSFSKY  213 (214)
T ss_pred             eCCceeEeccccccCcccCCccCCCCcEEEEEeeCCCChHHHHHHHHhcCCE--eCCcccc
Confidence            9864211               114999999999877788999999877555  4458996

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily

Probab=99.28  E-value=1.2e-10  Score=88.98  Aligned_cols=117  Identities=20%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      ||||.|| ++  ..+...+   ..  .........|+.+        +.++|||+.  ++++.+|+|+++    |+++ .
T Consensus         1 ~EiERKf-Lv--~~~~~~~---~~--~~~~~i~q~Yl~~--------~~~vRvR~~--~~~~~lT~K~~~----~~~R-~   57 (146)
T cd07761           1 MEIERKF-LV--NELPAGL---ES--YKKVEIRQGYLSI--------NPEVRIRSK--GEKYILTVKSGG----GLVR-E   57 (146)
T ss_pred             CcEEEEE-Eh--hhhhhhc---cc--CCCcEEEEEeccC--------CcEEEEEEE--CCEEEEEEEcCC----Ccce-E
Confidence            8999999 88  2343222   11  2234455668876        469999998  679999999875    5654 5


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEe-CCeEEEecceecCCcceeEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEW-KGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~-~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      |+|..|+..+                  ...+++.       .....+.++|+.+.+ ++..+++|.-.......+-+|+
T Consensus        58 E~E~~I~~~~------------------~~~ll~~-------~~~~~I~K~R~~~~~~~~~~~~vD~~~g~~~gL~~~Ev  112 (146)
T cd07761          58 EIEIEIDKKE------------------FEHLLEK-------TEGNLIEKTRYLIPLEGGLLAELDVFEGRLTGLVYAEV  112 (146)
T ss_pred             EEEEeCCHHH------------------HHHHHHh-------CCCCeEEEEEEEEEeCCCcEEEEEEEcCCCCCeEEEEE
Confidence            9999986542                  2233321       123467999999999 8888999975433333467777


Q ss_pred             EecCcc
Q 041449          160 ESLEPE  165 (204)
Q Consensus       160 El~~g~  165 (204)
                      |+.+.+
T Consensus       113 E~~se~  118 (146)
T cd07761         113 EFPSEE  118 (146)
T ss_pred             EcCCch
Confidence            776654

CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.

>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1

Probab=99.11  E-value=1.5e-09  Score=83.07  Aligned_cols=119  Identities=20%  Similarity=0.181  Sum_probs=79.8

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      ||||.|| ++....+...     .  .......-.|+.+.      .+.++|||..  ++++.+|+|++..   |+. |.
T Consensus         1 ~EiERKf-Lv~~~~~~~~-----~--~~~~~I~Q~Yl~~~------~~~~lRiR~~--~~~~~lT~K~~~~---~~~-R~   60 (148)
T cd07891           1 LEIERKF-LVKGDAWRAL-----A--AKGVRIRQGYLSTD------PERTVRVRIA--GDRAYLTIKGPTN---GLS-RY   60 (148)
T ss_pred             CeEEEEE-EECCcccccc-----c--CCCcEEEEEeeeCC------CCcEEEEEEe--CCEEEEEEEeCCC---Cce-EE
Confidence            8999999 8887666542     1  12344455599873      3459999998  6789999998865   454 46


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      |+|.+|+.++.+                  .++..       .....+.++|+.+.+++..++||.....+...+=+|+|
T Consensus        61 E~E~~i~~~~~~------------------~l~~~-------~~~~~I~K~R~~~~~~~~~~~lD~~~g~~~gL~~~EiE  115 (148)
T cd07891          61 EFEYEIPLADAE------------------ELLAL-------CEGPVIEKTRYRVPHGGHTWEVDVFHGENAGLVVAEIE  115 (148)
T ss_pred             EEEEeCCHHHHH------------------HHHhc-------CCCCeEEEEEEEEEeCCEEEEEEEEcCCCCceEEEEEE
Confidence            999998655321                  12111       12346799999999999999999865443223445556


Q ss_pred             ecCc
Q 041449          161 SLEP  164 (204)
Q Consensus       161 l~~g  164 (204)
                      +.+.
T Consensus       116 ~~~e  119 (148)
T cd07891         116 LPSE  119 (148)
T ss_pred             cCCc
Confidence            5544

This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.

>cd07751 PolyPPase_VTC4_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) protein VTC4, and similar proteins

Probab=99.00  E-value=2.4e-08  Score=84.47  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=117.9

Q ss_pred             eEeeccCCCHHHHHHHHHhhCCC-----C---------------CcceeEeeeeeeCCChhhhhcCe-------eeEEEE
Q 041449            3 VEVKLRLKDSTAHQKLSNILSPY-----H---------------KQTLFQENIFFDDKDSKLSSNAA-------VLRLRF   55 (204)
Q Consensus         3 iElK~~~~~~~~~~~l~~~l~~~-----~---------------~~~~~q~n~YfDTpd~~L~~~~~-------~LRiR~   55 (204)
                      .|.|+ .++++++..|...+...     .               .+..+.+|+|||||+++|....+       .||||.
T Consensus         8 ~e~Ky-~v~~~~~~~lk~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYFDtp~~~ly~~kl~k~~~r~klRlR~   86 (290)
T cd07751           8 RTTKY-WVHPRDVVPVKLAILKHLPVLVFNGSKEEEKEKEDVPPRDDSAITSVYFDNENLDLYHGRLERDEGAELIRLRW   86 (290)
T ss_pred             eeEEE-EEcHHHHHHHHHHHHhhCCceecCCccccccccccccCCCCceEEEEEecCCcHHHHHHHhcCCCCCceEEEEe
Confidence            68999 99999988766663211     1               11345799999999999988764       999999


Q ss_pred             ecCC---CeEEEEEccCCccc-CCceeeeEeeecCCchhhhhhhhCCCccC-----------------CccHHHHHHHHH
Q 041449           56 YNLN---SHCILSLKAKPTIS-DGISRVQELEEPVPLATATESVAKPQLLG-----------------QIDSKIMKMVKQ  114 (204)
Q Consensus        56 ~~~~---~~~~~TlK~~~~~~-~gl~~~~E~e~~l~~~~~~~~l~~~~~~~-----------------~~~~~~~~~ll~  114 (204)
                      +|+.   ....+.+|...... +|.+.  ....+++..++..+|.....+.                 .-.......+..
T Consensus        87 Yg~~~~~~~vflE~K~k~~~~~~~~~~--K~R~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~  164 (290)
T cd07751          87 YGGMQDTDTVFVERKTHHESWTGEKSV--KERFALKEKYVNSFLKGKYTVDKVFRKLRKEGKKSEAEIEKLEALATEIQY  164 (290)
T ss_pred             cCCCCCCCceEEEEEEeccCCccceeE--EEEeecCHHHHHHHHcCCcchHHHHHhhhhccccccccchhHHHHHHHHHH
Confidence            9753   67889999876432 34432  4567888777777765311110                 001112222221


Q ss_pred             HcCCCCceEEEeeeEEEEEEEEeC---CeEEEeccee-cCC--c--------------------c---eeEEEEEecCc-
Q 041449          115 EYGVGDEFVCLGGFKNVRAVYEWK---GLKLELDETT-YGF--G--------------------T---SYEIECESLEP-  164 (204)
Q Consensus       115 ~~~~~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~-~~~--~--------------------~---~~EiElEl~~g-  164 (204)
                      .. ....|+|...+.=.|..|...   ++-|++|.+- +..  .                    .   +.-+=||+|-. 
T Consensus       165 ~~-~~~~L~P~~~t~Y~R~Af~~~~d~~vRIT~Dt~L~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~f~~~ILEVK~~~  243 (290)
T cd07751         165 VI-LKRKLKPVVRTFYRRTAFQLPDDNRVRISLDTELCMIDERGRDGRRRTTLNDWPFKQLPDNEIVRFPYAVLEVKLQT  243 (290)
T ss_pred             HH-HhCCCcceEEEEEeEeeeecCCCCCEEEEEecCceeEecCccccccccccccCccccCCcccccCCCeEEEEEEecC
Confidence            11 011367765555566666542   3678888542 110  0                    0   01245666543 


Q ss_pred             ---chHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCCC
Q 041449          165 ---ERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPG  200 (204)
Q Consensus       165 ---~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~~  200 (204)
                         +....++.+++..+++...+ ..||+..+++...|+
T Consensus       244 ~~~~~~P~Wi~~ll~~~~v~~v~-~FSKY~~G~A~L~~~  281 (290)
T cd07751         244 QEGEEPPEWVEELLNSHLVEEVY-KFSKFLHGCATLFPD  281 (290)
T ss_pred             CCCCCCCHHHHHHHhhCCceECC-CcCHHHHHHHHHccC
Confidence               55677999999988876544 379999988766554

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2,-3, and -4 contain polyP polymerase domains. S. cerevisiae VTC4 belongs to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.89  E-value=2e-08  Score=74.75  Aligned_cols=114  Identities=22%  Similarity=0.347  Sum_probs=76.0

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||.|| ++..+.++.+.+.       .....-.|-.|++..      ++|||..  |++..+|+|++.+   ++. |.
T Consensus         3 ~EIERKF-LV~~d~WR~~a~~-------~i~~~q~y~at~~~~------tVRVRi~--g~~A~LTiK~~~~---~~~-R~   62 (156)
T COG2954           3 IEIERKF-LVAGDGWRQLADG-------SIYRRQGYLATEQGR------TVRVRIV--GDRAYLTIKGGAS---GLS-RS   62 (156)
T ss_pred             ceeeeee-eecCccHHHhhcc-------ceeecceeeecCCCc------EEEEEEe--cceEEEEEEcccc---cee-ee
Confidence            5999999 9999999988654       222334477777655      9999999  6799999998875   565 45


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEeccee--cCCcceeEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETT--YGFGTSYEIE  158 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~--~~~~~~~EiE  158 (204)
                      |+|.+++..++..+|.              ..   .|        ..+.+.|..+.+.+..-.+|.=.  ..+-...|||
T Consensus        63 EfEY~iPl~DA~e~l~--------------~~---~g--------~~IEK~R~~v~~~G~~wEVDvF~G~n~gLvvAEvE  117 (156)
T COG2954          63 EFEYEIPLADAEEMLT--------------TA---CG--------RVIEKTRYPVRHGGFLWEVDVFLGDNAGLVVAEVE  117 (156)
T ss_pred             eeeecccccCHHHHHH--------------Hh---cc--------hheeeeEeeeeeCCEEEEEeeecCcccceEEEEEE
Confidence            8888876554333322              11   11        13477888888888777777522  2222236666


Q ss_pred             E
Q 041449          159 C  159 (204)
Q Consensus       159 l  159 (204)
                      +
T Consensus       118 l  118 (156)
T COG2954         118 L  118 (156)
T ss_pred             c
Confidence            5

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.65  E-value=8.3e-07  Score=81.09  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             ceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCc-----eeeeEeeecCCchhhhhhhhCCCccCC
Q 041449           29 TLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGI-----SRVQELEEPVPLATATESVAKPQLLGQ  103 (204)
Q Consensus        29 ~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl-----~~~~E~e~~l~~~~~~~~l~~~~~~~~  103 (204)
                      .....++||.-|..++...+-+||||..  ++++.+|+|..  +.+|-     ..+.|+++.+                 
T Consensus       276 ~~~~~DiYl~~P~~d~~~~~e~LRvR~~--~Gk~~Ltyke~--i~dgp~ii~pk~~fEv~v~~-----------------  334 (656)
T PLN02318        276 TEETYDIYLLPPGEDPETCQSYLRMRNR--DGKYSLMFEEW--VTDEPFIISPRITFEVSVRL-----------------  334 (656)
T ss_pred             cceeeEEEecCCCCCchhccceEEEEec--CCEEEEEEecc--cccCCeecCcceeEEEeeeh-----------------
Confidence            3456899999999999999999999977  68999999932  22221     1122333322                 


Q ss_pred             ccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEEecCcchHHHHHHHHHHhCCCccc
Q 041449          104 IDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       104 ~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElEl~~g~~~~~~~~~~l~~~~i~~~  183 (204)
                            ..+|..||    +...+.+++.|..|..+++.|++|.....+..+.|||      +.+...+.++.+++|+...
T Consensus       335 ------~~gL~aLG----y~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIe------g~~r~~V~~~a~kLGl~g~  398 (656)
T PLN02318        335 ------LGGLMALG----YTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQ------GKDRLVVKDVAEQLGLEGS  398 (656)
T ss_pred             ------HhHHHHcC----CceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEe------hhHHHHHHHHHHHcCCCCC
Confidence                  11567778    7888999999999999999999998876654456666      3345567788888999766


Q ss_pred             cCCCCHH
Q 041449          184 FSDFSKF  190 (204)
Q Consensus       184 ~~~~SK~  190 (204)
                      ....|=.
T Consensus       399 ~i~~SYl  405 (656)
T PLN02318        399 YIPRTYI  405 (656)
T ss_pred             cccccHH
Confidence            6555633

>PF09359 VTC: VTC domain; InterPro: IPR018966 This presumed domain is found in the yeast vacuolar transport chaperone proteins VTC2, VTC3 and VTC4

Probab=98.58  E-value=2.4e-06  Score=72.00  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=101.7

Q ss_pred             eEeeccCCCHHHHHHHHHhhCCCC-----C---------------cceeEeeeeeeCCChhhhhcC-------eeeEEEE
Q 041449            3 VEVKLRLKDSTAHQKLSNILSPYH-----K---------------QTLFQENIFFDDKDSKLSSNA-------AVLRLRF   55 (204)
Q Consensus         3 iElK~~~~~~~~~~~l~~~l~~~~-----~---------------~~~~q~n~YfDTpd~~L~~~~-------~~LRiR~   55 (204)
                      .|.|+ .++++++..|...+....     .               .....+++|||||++++-...       ..+|||.
T Consensus         3 ~e~KY-~v~~~~~~~lk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYfDt~~~~~y~~~l~~~~~r~klRiR~   81 (283)
T PF09359_consen    3 RETKY-WVHPDNLMELKQRLLKHLPVDEYGGSSEDKKDAAISDEKGDYTIRSLYFDTPDFDLYHDKLEGRENREKLRIRW   81 (283)
T ss_dssp             EEEEE-EE-HHHHHHHHHHHHTTS-BEEESTTS-----------GGGGEEEEEEEE-TT-HHHHHHHHT-TT-EEEEEEE
T ss_pred             EEEEE-EEcHHHHHHHHHHHHHhCCccccCCCccccccccccccCCCccEEEEEecCCChHHHHHHhcCCCCCceEEEEE
Confidence            69999 999999987777643221     1               134689999999998887764       5999999


Q ss_pred             ecC----CCeEEEEEccCCcccCCceeeeEeeecCCchhhhhhhhCCCcc-------------C-Cc--cHHHHHHH---
Q 041449           56 YNL----NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLL-------------G-QI--DSKIMKMV---  112 (204)
Q Consensus        56 ~~~----~~~~~~TlK~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~-------------~-~~--~~~~~~~l---  112 (204)
                      +++    ++...+.+|.......+-... ....+++..++..++.....+             + ..  .......+   
T Consensus        82 Yg~~~~~~~~vflE~K~k~~~~~~~~s~-K~R~~l~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~  160 (283)
T PF09359_consen   82 YGDNDPESSPVFLEIKTKHEGWTYEESV-KRRFPLKEKEAEDFLNGDYTWEDALEKMFDSGSWEEELEKSRQLAEEIQRL  160 (283)
T ss_dssp             ESSCCG---EEEEEEEEEEEGGGTEEEE-EEEEEEEGGGHHHHHTTSCHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCcCcceEEEEEEEecCCccccccc-eeEEEcCHHHHhhHhcCCccHHHHHHHhhhhccchhhhhhhHHHHHHHHHH
Confidence            975    357888888775432221001 334566666666666421100             0 00  01112222   


Q ss_pred             HHHcCCCCceEEEeeeEEEEEEEEeC---CeEEEecceec-------------------CC---c------------c--
Q 041449          113 KQEYGVGDEFVCLGGFKNVRAVYEWK---GLKLELDETTY-------------------GF---G------------T--  153 (204)
Q Consensus       113 l~~~~~~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~~-------------------~~---~------------~--  153 (204)
                      +...    .|.|+..+.=.|..|...   +.-|++|.+-.                   ..   .            .  
T Consensus       161 ~~~~----~l~P~~~~~Y~R~af~~~~~~~vRiT~D~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  236 (283)
T PF09359_consen  161 IKRY----QLQPVLRTSYRRTAFQGPEDGNVRITFDTNLRFIREDTFDYDSPIRDPNNWRRPDEDFNGDYPFPLLPPGDV  236 (283)
T ss_dssp             HHHT----T-EEEEEEEEEEEEEEETTEECEEEEEEEEEEEEE---TTSSSSST-TTSSS-SSTTSSSSTTTTTS-GGGE
T ss_pred             HHhC----CCCceEEEEEEeeEEEccCCCcEEEEEccCeeEEEecccccccccccccccccccccccccccccccCcccc
Confidence            1222    378877776677777653   46777775432                   00   0            0  


Q ss_pred             --eeEEEEEecCcc-hHHHHHHHHH-HhCCCccccCCCCHHHHHHh
Q 041449          154 --SYEIECESLEPE-RDRKLIEGLL-EENGIEYDFSDFSKFAVFRS  195 (204)
Q Consensus       154 --~~EiElEl~~g~-~~~~~~~~~l-~~~~i~~~~~~~SK~~R~~~  195 (204)
                        +.-+=||+|-.. ....++.+++ ..+  ...+...||+..+++
T Consensus       237 ~~fp~aIlEvK~~~~~~P~wi~~Ll~~~~--~~~~~~fSKY~~g~a  280 (283)
T PF09359_consen  237 ARFPYAILEVKYDGEQLPSWIQDLLNSHL--VLEVPSFSKYCHGMA  280 (283)
T ss_dssp             EE-SSEEEEEEEEEE---HHHHHHHTSTT---EE-TT--HHHHHHH
T ss_pred             ccCCeEEEEEeeCCCCChHHHHHHHhccC--CccCCccCHHHHHHH
Confidence              013556776655 6677999999 443  444445899998764

This domain is also found in a variety of bacterial proteins. ; PDB: 3G3O_A 3G3R_B 3G3U_A 3G3Q_A 3G3T_A.

>cd07892 PolyPPase_VTC2-3_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, and -3 , and similar proteins

Probab=98.09  E-value=0.00026  Score=60.20  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             eeccCCCHHHHHH----HHHhhCCC-C---------------CcceeEeeeeeeCCChhhhhcCe-------eeEEEEec
Q 041449            5 VKLRLKDSTAHQK----LSNILSPY-H---------------KQTLFQENIFFDDKDSKLSSNAA-------VLRLRFYN   57 (204)
Q Consensus         5 lK~~~~~~~~~~~----l~~~l~~~-~---------------~~~~~q~n~YfDTpd~~L~~~~~-------~LRiR~~~   57 (204)
                      .|| .+.++++-.    |+.||..- +               ....+.+|+|||||+++|-..++       .||||.+|
T Consensus        10 ~Ky-wvh~dn~~evK~~IlrhLPvlvy~~~~~~~~~~~~~~~~~~~~ItSLYFDn~~~~ly~~kl~k~~~reklRlRwYg   88 (303)
T cd07892          10 YKF-WVHPDNLMEVKTRILRHLPVLVYNNQSSEDDDDVLGAGSEDPTITTLYFDNPNFDLYNDKLLKLNEAPTLRLRWTG   88 (303)
T ss_pred             EEE-EEcHHHHHHHHHHHHhhCCceeecCCcccccccccccCCCCCcEEEEEeCCCCHHHHHHHhcCcCCCceEEEEEcC
Confidence            588 888887754    44443210 1               12346799999999999988875       89999996


Q ss_pred             C---CCeEEEEEccCCcccCCceeeeEeeecCCchhhhhhhhCCCccCC-c------------cHHH---HHHHHHHcCC
Q 041449           58 L---NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQ-I------------DSKI---MKMVKQEYGV  118 (204)
Q Consensus        58 ~---~~~~~~TlK~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~-~------------~~~~---~~~ll~~~~~  118 (204)
                      .   .....+..|.....- |.+  .+...++....+..++...-.+.. +            ...+   +..+....+ 
T Consensus        89 ~~~~~~~IflE~K~k~~~~-~~~--~K~R~~l~~k~v~~~l~g~~~~~~~~~k~~~~~~~~~~~~~l~~Ei~~~i~~~~-  164 (303)
T cd07892          89 KLSDKPDIFVEKKTFDENT-SSF--EEDKLQLKEKYINGFIFGKYKFEKKLQKMEKRGADLENLKKDVENIQDFIRENK-  164 (303)
T ss_pred             CCCCCCCEEEEEEEEeCCC-Cee--EEEEeccCHHHHHHHHcCCcchhhhHHhhhhccccchhhHHHHHHHHHHHHHcC-
Confidence            3   356788888765421 332  256678888877777763211100 0            0011   122222222 


Q ss_pred             CCceEEEeeeEEEEEEEEeC---CeEEEeccee-c-C---------------------C-----cc----eeE------E
Q 041449          119 GDEFVCLGGFKNVRAVYEWK---GLKLELDETT-Y-G---------------------F-----GT----SYE------I  157 (204)
Q Consensus       119 ~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~-~-~---------------------~-----~~----~~E------i  157 (204)
                         |+|...+.=.|..|..+   .+-|++|..- + .                     +     +.    ..|      .
T Consensus       165 ---L~P~~r~~Y~RtAFq~~~d~~vRIT~Dtnl~~i~Ed~~d~~~p~r~~~~W~r~di~~~~~~p~~~L~~~e~~~Fp~a  241 (303)
T cd07892         165 ---LQPVLRAVYTRTAFQIPGDDRIRVSIDSDIAFIREDSFDKDRPIRDPNDWHRTDIDDSNSNPFKFLRKGEYSKFPYS  241 (303)
T ss_pred             ---CceeEEEeEEEEEeecCCCCcEEEEEeCCceEEEeccccccccccCcccccccccccccccccccCCccccccCceE
Confidence               67766555566666554   2566666431 1 0                     0     00    022      3


Q ss_pred             EEEe--cC----cchHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCC
Q 041449          158 ECES--LE----PERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP  199 (204)
Q Consensus       158 ElEl--~~----g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~  199 (204)
                      =||+  ..    +.....++.+++..+.+...+ ..||+.-+.+...+
T Consensus       242 vLEIK~~~~~~~~~~~P~Wi~dLl~s~~v~~~~-~FSKy~~g~A~L~~  288 (303)
T cd07892         242 VLEIKVKESLNKNRKHYEWVNDLTNSHLVKEVP-KFSKFVQGVASLFE  288 (303)
T ss_pred             EEEEEEcccccccccccHHHHHHHhhcCceECC-CcCHHHHHHHHHcc
Confidence            3444  33    234577999999987777665 47999997754433

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. S. cerevisiae VTC-2,and -3 belong to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-strande

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3v85_A	210	1.9 Angstrom Resolution Crystal Structure Of The Pr		2e-45

>pdb|3V85|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Protein Q9siy3 From Arabidopsis Thaliana Length = 210

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 135/210 (64%), Gaps = 11/210 (5%)
Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           MEVEVKLRL  + AH +L+ +L+PYH +TL Q N FFD   + LS   AVLRLRF    +
Sbjct: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60
Query: 61  ---------HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKM 111
                     CI+SLKAKPT+++GISRV+E EE +      E V  P  L  I S+++K 
Sbjct: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120
Query: 112 VKQEYGVGD--EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRK 169
           VK+EYG  D   FVCLGGF+NVR VYEW+G+KLE+DET Y FG  YEIECE+ EPER + 
Sbjct: 121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180
Query: 170 XXXXXXXXXXXXYDFSDFSKFAVFRSGKLP 199
                       +  SD +KFAVFRSGKLP
Sbjct: 181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
2gfg_A	193	BH2851; antiparallel barrel, structural genomics,	4e-40
3tj7_A	195	GBAA_1210 protein; structural genomics, adenosine	3e-33
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	2e-18
1yem_A	179	Hypothetical protein; structural genomics, southea	4e-16
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	3e-13
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	5e-11
2een_A	183	Hypothetical protein PH1819; dimer, NPPSFA, nation	3e-09
3bhd_A	234	Thtpase, thiamine triphosphatase; hydrolase, struc	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans} Length = 193

 Score =  134 bits (339), Expect = 4e-40
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 12/197 (6%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           +E+E K  +      ++L + L         Q N +F+  D +L   ++ LR+R     +
Sbjct: 6   IEIERKTLV-SKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKE--A 62

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
               +LK           + E  + +    A  ++           ++M  ++       
Sbjct: 63  IFTFTLKQPHPAG-----LLETNQTLSKQEAKLALESAHFP---SGEVMDALRDLSIPIS 114

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
           +   +G     RA   ++   L LD ++Y     YEIE E    E      + +L+   I
Sbjct: 115 QLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSI 174

Query: 181 EYDFSDFSKFAVFRSGK 197
               ++ +K   F S K
Sbjct: 175 SQVPTE-NKIQRFFSKK 190

>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A* Length = 195

 Score =  116 bits (293), Expect = 3e-33
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 14/197 (7%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           +E+E K  + +      L    S   +    Q N +F+  +S L    + LR+R      
Sbjct: 8   IEIEFKNIVTEE-EFHALCKSFS--IEVFTKQVNHYFETPNSSLKEAGSALRIRHKG--E 62

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
              L+LK    +      + E  + V    A   +    ++      +M  + +      
Sbjct: 63  TYTLTLKQPAEVG-----LLETHQVVTENEAKMMMETNVII---SGAVMNQLCKLQIPVS 114

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
               +G     RA   ++G  L  D + Y     YEIE E  + E  +     LL+++ I
Sbjct: 115 ALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNI 174

Query: 181 EYDFSDFSKFAVFRSGK 197
               ++ +K   F   K
Sbjct: 175 PIRHTN-NKVKRFFLAK 190

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii} Length = 165

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 31/183 (16%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           ME+EVK R+      +K+   L         QE+++F+    KL      LR+R  N   
Sbjct: 1   MEIEVKFRVNFEDIKRKIEG-LGAKFFGIEEQEDVYFELPSPKL------LRVRKINNTG 53

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
              ++ K             ELE  V                  D +    + +  G   
Sbjct: 54  KSYITYKEIL--DKRNEEFYELEFEVQ-----------------DPEGAIELFKRLG--- 91

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGI 180
            F   G  K  R +Y+   +  EL+      G   +IE  +  PE  +K+I  +    G+
Sbjct: 92  -FKVQGVVKKRRWIYKLNNVTFELNRVE-KAGDFLDIEVITSNPEEGKKIIWDVARRLGL 149

Query: 181 EYD 183
           + +
Sbjct: 150 KEE 152

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2 Length = 179

 Score = 71.9 bits (176), Expect = 4e-16
 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 31/182 (17%)

Query: 2   EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSH 61
           EVE+K ++K       L+   +P   +   QE+++F+    KL      LR+R  +    
Sbjct: 10  EVEIKFKIKLEDFLHTLNT-FNPEFVRYEEQEDVYFEVPRPKL------LRIRGVHNLKK 62

Query: 62  CILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDE 121
             L+ K    + +      E+E  +        V K   LG                   
Sbjct: 63  YYLTFK--EILDENNEEFYEVEFEIGDFEKAVEVFK--RLG------------------- 99

Query: 122 FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIE 181
           F      K  R VY+  G+ LE++    G G   +IE  S  PE  ++ I  + +  G++
Sbjct: 100 FKIQATIKKKRWVYKLNGVTLEVNRV-EGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLK 158

Query: 182 YD 183
            +
Sbjct: 159 EE 160

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2 Length = 189

 Score = 58.5 bits (141), Expect = 5e-11
 Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 33/186 (17%)

Query: 2   EVEVKLRLKD-STAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           EVE+K R+K+       +  I      +   + + F+D     L+     L LR      
Sbjct: 12  EVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAG 71

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
             +  +K         + + +L+    +                                
Sbjct: 72  IKLWIVKGPEADRCEATNITKLDSAQSMLENM---------------------------- 103

Query: 121 EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEP---ERDRKLIEGLLEE 177
            +  +   K +R+++      + LD    GFG   E    + +     R R+ +  L ++
Sbjct: 104 GYEVIQCSKKIRSIFFVGEFHITLDFLD-GFGHFAEFAIMTDDETALARYRERLVALAQQ 162

Query: 178 NGIEYD 183
             +   
Sbjct: 163 FHLSEA 168

>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii} Length = 183

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 42/185 (22%), Positives = 62/185 (33%), Gaps = 29/185 (15%)

Query: 2   EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSH 61
           EVE+K    D    +K+         +    E+I++       S     LR+R    N H
Sbjct: 3   EVELKGYANDE-IFEKVRETFE--FMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGH 59

Query: 62  CILSLKAK-PTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
             + L  K P I +      E+E  +                Q D      +    G   
Sbjct: 60  NEVFLTYKGPKIDEKSKTRLEIEVEI----------------QEDVDKYFELLDRLG--- 100

Query: 121 EFVCLGGFKNVRAVYE-WKGLKLELDETTYGFGTSYEIECESLEP---ERDRKLIEGLLE 176
            F  +      R  Y   KG+ + LDE   G G   EIE    E        + +E +L 
Sbjct: 101 -FKEVLKVVKTREKYYVEKGVTITLDEVE-GLGKFIEIETLVKEKDEIPEAVEKLEKILR 158

Query: 177 ENGIE 181
           E G+E
Sbjct: 159 ELGVE 163

>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A Length = 234

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           +EVE K      T  +      +  ++ T    + ++D  +  L      LR R    +S
Sbjct: 25  IEVERKFLPGPGTEERLQELGGTLEYRVTF--RDTYYDTPELSLMQADHWLRRRE---DS 79

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
              L       +    +  +EL     +      V +   L    +  +  V    G   
Sbjct: 80  GWELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRADGL---GAGDVAAVLGPLG--- 133

Query: 121 EFVCLGGFKNVRAVY---------EWKGLKLELDETTYGFGTSYEIECE---SLEPERDR 168
               +  F   R+ +         E   L+++LD   +G+    E+E       E     
Sbjct: 134 -LQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTADFGYAVG-EVEALVHEEAEVPTAL 191

Query: 169 KLIEGLLEENGIEYDFSDFSKFAVF 193
           + I  L    G+    +  +K  V+
Sbjct: 192 EKIHRLSSMLGVPAQETAPAKLIVY 216

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 51/206 (24%)

Query: 6   KLRLKDSTAHQKLSNIL-SPYHKQTLFQENIFFDD-KDSKLSSNAAVLRLRFYNLNSHC- 62
            ++L+  +   +L  +L S  ++  L    +   + +++K            +NL   C 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKA--------WNAFNL--SCK 267

Query: 63  ILSLKAKPTISDGIS----RVQELEEPVPLATATESVAKPQLLGQ-IDSKIMKMVKQEYG 117
           IL       ++D +S        L+      T  E      LL + +D +   + ++   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLT 324

Query: 118 VGDEFVCLGG--FKNVRAVYE-WKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGL 174
                + +     ++  A ++ WK   +  D+ T    +S       LEP   RK+    
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIESSLN----VLEPAEYRKM---- 374

Query: 175 LEENGIEYDFSDFSKFAVFRSG-KLP 199
                       F + +VF     +P
Sbjct: 375 ------------FDRLSVFPPSAHIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
2gfg_A	193	BH2851; antiparallel barrel, structural genomics,	100.0
3v85_A	210	CYTH-like phosphatase; CYTH domain, hydrolase; HET	100.0
3tj7_A	195	GBAA_1210 protein; structural genomics, adenosine	100.0
2een_A	183	Hypothetical protein PH1819; dimer, NPPSFA, nation	99.96
3bhd_A	234	Thtpase, thiamine triphosphatase; hydrolase, struc	99.96
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	99.95
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	99.95
3n10_A	179	Adenylate cyclase 2; CYTH domain, antiparallel bar	99.94
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	99.93
1yem_A	179	Hypothetical protein; structural genomics, southea	99.9
2fbl_A	153	Hypothetical protein NE1496; APC5855, PSI, protein	99.07
3g3t_A	295	Vacuolar transporter chaperone 4; polyphosphate po	98.98
3g3o_A	392	Vacuolar transporter chaperone 2; polyphosphate po	97.16

>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}

Probab=100.00  E-value=2e-41  Score=269.11  Aligned_cols=184  Identities=21%  Similarity=0.229  Sum_probs=157.5

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||+|| +++++.+.++...+.........|+|+||||||++|++++++||||..  |++|+||||+|+.+  |   |.
T Consensus         6 ~EIE~K~-~v~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~aLRiR~~--~~~~~~TlK~~~~~--g---R~   77 (193)
T 2gfg_A            6 IEIERKT-LVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREK--EAIFTFTLKQPHPA--G---LL   77 (193)
T ss_dssp             EEEEEEE-EECHHHHHHHHHHTTCCGGGCEEEEEEEEECTTCHHHHTTCEEEEEEE--TTEEEEEEEEECSS--S---EE
T ss_pred             eEEEEec-cCCHHHHHHHHHHhhhcCCCceeeEEEeeeCCCHHHHhCCCEEEEEee--CCcEEEEEccCCCC--C---Cc
Confidence            4999999 899999999998876433234559999999999999999999999999  67999999999874  4   56


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCC-ceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD-EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~-~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      |||.+|+.++++.+++. +.+|   ...+..++..+|+.. .|.|++++++.|+++.+++++||||.+.|.+..+||||+
T Consensus        78 E~e~~l~~~~~~~~l~~-~~~p---~~~~~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~  153 (193)
T 2gfg_A           78 ETNQTLSKQEAKLALES-AHFP---SGEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEF  153 (193)
T ss_dssp             EEEEEECHHHHHHHHHH-CCCC---CSHHHHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             eEeccCCchhhhhhccc-ccCC---cHHHHHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEE
Confidence            99999998888877763 4454   345677788888764 499999999999999999999999999998755799999


Q ss_pred             EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHhcC
Q 041449          160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGK  197 (204)
Q Consensus       160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~  197 (204)
                      |+++++.+...|..+++++|+++.++ .||++|||..+
T Consensus       154 El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~~~~~  190 (193)
T 2gfg_A          154 EGTSEEHATVTFQEILKTFSISQVPT-ENKIQRFFSKK  190 (193)
T ss_dssp             EESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHHHHHH
T ss_pred             EECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHHHHHh
Confidence            99999888889999999999999886 79999999754

>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-41  Score=272.15  Aligned_cols=199  Identities=58%  Similarity=0.956  Sum_probs=170.5

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecC---------CCeEEEEEccCCc
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNL---------NSHCILSLKAKPT   71 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~---------~~~~~~TlK~~~~   71 (204)
                      ||||+||++.+++.+.+++..++.......+|+|+||||||++|++++++||||..++         +.+|+||||+++.
T Consensus         1 iEiE~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~   80 (210)
T 3v85_A            1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPT   80 (210)
T ss_dssp             CEEEEEEEECSHHHHHHHHHHTGGGEEEEEEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEE
T ss_pred             CeEEEEecCCCHHHHHHHHHhccccccceEEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCc
Confidence            8999999667899999999887765566789999999999999999999999999853         2378999999999


Q ss_pred             ccCCceeeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCC--ceEEEeeeEEEEEEEEeCCeEEEecceec
Q 041449           72 ISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD--EFVCLGGFKNVRAVYEWKGLKLELDETTY  149 (204)
Q Consensus        72 ~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~--~l~~~~~~~~~R~~~~~~~~el~lD~~~~  149 (204)
                      +.+|+++++||+.+++...+...+..+.....++...+...+...++..  .+.++++++|.|+++.+++++|+||.+.|
T Consensus        81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~  160 (210)
T 3v85_A           81 LANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKY  160 (210)
T ss_dssp             EETTEEEEEEEEEEECHHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCceeEEEEeecCChhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeee
Confidence            8889999999999999876666555433333334456666766666532  38999999999999999999999999999


Q ss_pred             CCcceeEEEEEecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCC
Q 041449          150 GFGTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP  199 (204)
Q Consensus       150 ~~~~~~EiElEl~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~  199 (204)
                      .++.++|||+|..+++.++..+..+++++||+++.+..||++|||++++|
T Consensus       161 ~~g~~~ELEle~~d~e~~~~~~~~lL~~~gI~~~~s~~sK~arf~~~klp  210 (210)
T 3v85_A          161 DFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP  210 (210)
T ss_dssp             TTEEEEEEEEECSCHHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTSCC
T ss_pred             CCcEEEEEEEEeCCHHHHHHHHHHHHHHcCCCcCcCcccHHHHHhhccCC
Confidence            99899999999999999999999999999999999889999999999998

>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*

Probab=100.00  E-value=5.8e-40  Score=260.59  Aligned_cols=184  Identities=22%  Similarity=0.264  Sum_probs=150.2

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      +|||+|| +++++.+.++..++.  .....+|+|+||||||++|++++++||||..  |++|+||||+|+.+  |   +.
T Consensus         8 ~EiE~K~-~l~~~~~~~l~~~l~--~~~~~~~~n~YfDTpd~~L~~~~~~LRiR~~--~~~~~~TlK~~~~~--g---~~   77 (195)
T 3tj7_A            8 IEIEFKN-IVTEEEFHALCKSFS--IEVFTKQVNHYFETPNSSLKEAGSALRIRHK--GETYTLTLKQPAEV--G---LL   77 (195)
T ss_dssp             EEEEEEE-EECHHHHHHHHHHTT--CCCCEEEEEEEEECTTCHHHHTTCEEEEEEE--TTEEEEEEEEECSS--S---EE
T ss_pred             ceEEEEE-ecCHHHHHHHHHhcC--CCceEEEEEEEEeCCcHhHHhCCCEEEEEeE--CCeEEEEEeeCCCC--C---ce
Confidence            5999999 899999999999865  3457899999999999999999999999999  67999999999864  4   35


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCc-eEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~-l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      ||+.+++.+++..++.. ..+|   +..+..++..+|+... |.+++.++|.|+++.+.+++||||++.|.+..+||||+
T Consensus        78 E~~~~l~~~ea~~~l~~-~~~p---~~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~  153 (195)
T 3tj7_A           78 ETHQVVTENEAKMMMET-NVII---SGAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEF  153 (195)
T ss_dssp             EEEEEECHHHHHHHHHS-SCCC---SSHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEE
T ss_pred             EEEeeCCHHHHHHHhhc-CCCC---hHHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEE
Confidence            99999999888888885 3354   2345557799998654 99999999999999999999999999999877899999


Q ss_pred             EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCC
Q 041449          160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP  199 (204)
Q Consensus       160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~  199 (204)
                      |+.+++.++..|..+++++||+++++. ||++||+..+..
T Consensus       154 E~~d~~~~~~~~~~lL~~~gi~~~~~~-sKi~R~~~~~~~  192 (195)
T 3tj7_A          154 EVQDEETGKAAFIHLLKQHNIPIRHTN-NKVKRFFLAKQN  192 (195)
T ss_dssp             EESCHHHHHHHHHHHHHHTTCCCCC---------------
T ss_pred             EeCCHHHHHHHHHHHHHHCCCCcCCCC-CHHHHHHHHHHh
Confidence            999999999999999999999999865 999999986643

>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}

Probab=99.96  E-value=3.7e-29  Score=196.75  Aligned_cols=162  Identities=21%  Similarity=0.238  Sum_probs=125.6

Q ss_pred             CeeEeeccCCCHHH-HHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEe--cCCCeEEEEEccCCcccCCce
Q 041449            1 MEVEVKLRLKDSTA-HQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFY--NLNSHCILSLKAKPTISDGIS   77 (204)
Q Consensus         1 ~EiElK~~~~~~~~-~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~--~~~~~~~~TlK~~~~~~~gl~   77 (204)
                      ||||+|+ .+ ++. ..+|.+  +........|+|+||||||++|++++++||||..  +.+++|++|+|+|+. .+|++
T Consensus         2 ~EiElK~-~v-~~~~~~~L~~--~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~-~~~~~   76 (183)
T 2een_A            2 YEVELKG-YA-NDEIFEKVRE--TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKI-DEKSK   76 (183)
T ss_dssp             CEEEEEE-EC-CHHHHHHHHT--TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEEC-CTTSC
T ss_pred             eEEEEEE-Ee-CHHHHHHHHh--cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcC-CCCce
Confidence            6999999 56 555 444443  4334456789999999999999999999999942  335789999999854 45777


Q ss_pred             eeeEeeecCC-chhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC-CeEEEecceecCCccee
Q 041449           78 RVQELEEPVP-LATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK-GLKLELDETTYGFGTSY  155 (204)
Q Consensus        78 ~~~E~e~~l~-~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~-~~el~lD~~~~~~~~~~  155 (204)
                      .+.|||.+|+ +.                 ..+..+|..+|    +.+++.+.+.|..|.+. +++|+||.+.+. |.+.
T Consensus        77 ~r~E~e~~v~~~~-----------------~~~~~~L~~lg----l~~~~~~~k~R~~~~~~~~~~v~lD~~~~l-g~f~  134 (183)
T 2een_A           77 TRLEIEVEIQEDV-----------------DKYFELLDRLG----FKEVLKVVKTREKYYVEKGVTITLDEVEGL-GKFI  134 (183)
T ss_dssp             CEEEEEEEECSCH-----------------HHHHHHHHHTT----CEEEEEEEEEEEEEEEETTEEEEEEEETTT-EEEE
T ss_pred             eEEEEEEeecCCH-----------------HHHHHHHHHCC----CeEEEEEEEEEEEEEeCCCEEEEEEeecCC-eeEE
Confidence            7889999996 43                 23455667777    78999999999999999 999999998644 3456


Q ss_pred             EEEEEecCc---chHHHHHHHHHHhCCCccccCCCCHHHH
Q 041449          156 EIECESLEP---ERDRKLIEGLLEENGIEYDFSDFSKFAV  192 (204)
Q Consensus       156 EiElEl~~g---~~~~~~~~~~l~~~~i~~~~~~~SK~~R  192 (204)
                      |||+|++++   +.+...+..+++++|| ...  .+|+-.
T Consensus       135 EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~--~~~sY~  171 (183)
T 2een_A          135 EIETLVKEKDEIPEAVEKLEKILRELGV-EKF--ERRSYL  171 (183)
T ss_dssp             EEEEECSSGGGHHHHHHHHHHHHHHHTC-CCB--CCSCHH
T ss_pred             EEEEecCCcccHHHHHHHHHHHHHHcCC-CCc--eeccHH
Confidence            999999865   4578899999999999 443  444443

>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A

Probab=99.96  E-value=2.2e-29  Score=205.34  Aligned_cols=180  Identities=18%  Similarity=0.203  Sum_probs=131.9

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCC-ceee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDG-ISRV   79 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~g-l~~~   79 (204)
                      +|||+|+ .++++.+.+|.+. .........|+|+||||||++|++++++||||..  + .  +|+|+|+..  | .+.+
T Consensus        25 ~EIElK~-~v~~~~~~~L~~~-~~~~~~~~~q~n~YfDTpd~~L~~~~~aLRiR~~--~-~--~tlK~p~~~--g~~~~~   95 (234)
T 3bhd_A           25 IEVERKF-LPGPGTEERLQEL-GGTLEYRVTFRDTYYDTPELSLMQADHWLRRRED--S-G--WELKCPGAA--GVLGPH   95 (234)
T ss_dssp             EEEEEEE-CCCTTHHHHHHHT-TCEEEEEEEEEEEEEECTTCHHHHTTCEEEEETT--T-E--EEEEEESSB--TTBCTT
T ss_pred             EEEEEee-cCCHHHHHHHHhC-CCCCCCcceEEEEEeeCCChHHHhCCcEEEEECC--C-C--eEEecCCcc--CccCCc
Confidence            3999999 7888777766554 3223446789999999999999999999999987  3 3  778988764  3 2223


Q ss_pred             eEeeecCCchhhhh-----hhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEe--------C-CeEEEec
Q 041449           80 QELEEPVPLATATE-----SVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEW--------K-GLKLELD  145 (204)
Q Consensus        80 ~E~e~~l~~~~~~~-----~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~--------~-~~el~lD  145 (204)
                      .||+ ++..+..+.     .+.  ..++.  ...+..++...+    |.+++++.+.|..|.+        + +++|+||
T Consensus        96 ~ey~-e~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~L~~~~----l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD  166 (234)
T 3bhd_A           96 TEYK-ELTAEPTIVAQLCKVLR--ADGLG--AGDVAAVLGPLG----LQEVASFVTKRSAWKLVLLGADEEEPQLRVDLD  166 (234)
T ss_dssp             SEEE-EECSHHHHHHHHHHHHT--C---C--CSSHHHHHHHHT----CEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEE
T ss_pred             ceec-cccCccchhhhhhhhhc--CCccc--hhHHHHHHhcCC----CEEEEEEEEEEEEEEEcccCCccCCCeEEEEEe
Confidence            4776 444432211     111  01111  123555555555    8999999999999999        7 7999999


Q ss_pred             ceecCCcc-eeEEEEEecCcc---hHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCCC
Q 041449          146 ETTYGFGT-SYEIECESLEPE---RDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPG  200 (204)
Q Consensus       146 ~~~~~~~~-~~EiElEl~~g~---~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~~  200 (204)
                      .+.  .|. +||||+|+++++   .+...+..+++++||+......||++||+...-|+
T Consensus       167 ~~~--~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~~~~~k~~~~l~~~~~~  223 (234)
T 3bhd_A          167 TAD--FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQETAPAKLIVYLQRFRPQ  223 (234)
T ss_dssp             EET--TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTCCCCCHHHHHHHHHCHH
T ss_pred             ccc--CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccccchHHHHHHHHHhCHH
Confidence            998  345 899999999753   56778899999999999777889999999866554

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2

Probab=99.95  E-value=4.3e-27  Score=185.96  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=122.1

Q ss_pred             CeeEeeccCC-CHHHHHHHHHhhCC-CCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCcee
Q 041449            1 MEVEVKLRLK-DSTAHQKLSNILSP-YHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISR   78 (204)
Q Consensus         1 ~EiElK~~~~-~~~~~~~l~~~l~~-~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~   78 (204)
                      +|||+|+ .+ +.+.+.+++..++. .......|+|+|||||+++|++++++||||..++++.+++|+|+|...  |.+ 
T Consensus        11 ~EiElK~-~v~d~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~--~~~-   86 (189)
T 2aca_A           11 FEVELKY-RVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEAD--RCE-   86 (189)
T ss_dssp             EEEEEEE-EESCHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTT--BEE-
T ss_pred             EEEEEEE-ecCCHHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcC--ceE-
Confidence            5999999 56 58888887777664 234567899999999999999999999999986445799999988753  542 


Q ss_pred             eeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEE
Q 041449           79 VQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIE  158 (204)
Q Consensus        79 ~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiE  158 (204)
                          +.+|++                 ...+..+|..+|    +.+++++++.|..|.+.+++|+||.+.+. |.++|||
T Consensus        87 ----e~~v~d-----------------~~~~~~~L~~lg----l~~~~~~~k~R~~~~~~~~~v~lD~~~~l-g~f~EiE  140 (189)
T 2aca_A           87 ----ATNITK-----------------LDSAQSMLENMG----YEVIQCSKKIRSIFFVGEFHITLDFLDGF-GHFAEFA  140 (189)
T ss_dssp             ----EEEBSC-----------------HHHHHHHHHHTT----CEEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEE
T ss_pred             ----EEecCC-----------------HHHHHHHHHHcC----CcEEEEEEEEEEEEEECCEEEEEEcccCC-eeEEEEE
Confidence                344422                 134566777777    78999999999999999999999998753 4567999


Q ss_pred             EEecCc---chHHHHHHHHHHhCCCccc
Q 041449          159 CESLEP---ERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       159 lEl~~g---~~~~~~~~~~l~~~~i~~~  183 (204)
                      +|++++   +.+...+..+++++||+..
T Consensus       141 ~e~~~~~~~~~~~~~~~~l~~~lgi~~~  168 (189)
T 2aca_A          141 IMTDDETALARYRERLVALAQQFHLSEA  168 (189)
T ss_dssp             EEESCSGGGTTHHHHHHHHHHHTTCCGG
T ss_pred             EEcCCccchHHHHHHHHHHHHHcCcCcc
Confidence            999864   4678899999999999876

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}

Probab=99.95  E-value=5.1e-27  Score=181.56  Aligned_cols=152  Identities=22%  Similarity=0.268  Sum_probs=123.1

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      ||||+|+ +++.+.+.+.+..++........|+|+|||||++      ++||||..+.|++|+||+|+|+  .++.+.+.
T Consensus         1 ~EIE~K~-~v~~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~--~g~~~~~~   71 (165)
T 2dc4_A            1 MEIEVKF-RVNFEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL--DKRNEEFY   71 (165)
T ss_dssp             CEEEEEE-ECCHHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC--SSSSCEEE
T ss_pred             CeEEEEE-EECHHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC--CCCceeee
Confidence            7999999 7888888887777654344467899999999987      8999997422579999999998  34566677


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      ||+.+|++.                 ..+..++..+|    +.+.+.+.+.|..|.+++++++||.+.+. |...|||++
T Consensus        72 E~e~~i~~~-----------------~~~~~~L~~lg----~~~~~~~~k~R~~~~~~~~~i~lD~~~~~-g~~~EiE~~  129 (165)
T 2dc4_A           72 ELEFEVQDP-----------------EGAIELFKRLG----FKVQGVVKKRRWIYKLNNVTFELNRVEKA-GDFLDIEVI  129 (165)
T ss_dssp             EEEEEBSCH-----------------HHHHHHHHHTT----CCEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEEEC
T ss_pred             EEEEEcCCH-----------------HHHHHHHHHcC----CcEEEEEEEEEEEEEECCEEEEEEecCCC-ccEEEEEEE
Confidence            999998543                 23445666666    67889999999999999999999998764 445699998


Q ss_pred             ecCcchHHHHHHHHHHhCCCccc
Q 041449          161 SLEPERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       161 l~~g~~~~~~~~~~l~~~~i~~~  183 (204)
                      +.+.+.+...+.++++++||+..
T Consensus       130 ~~~~~~~~~~~~~l~~~lgi~~~  152 (165)
T 2dc4_A          130 TSNPEEGKKIIWDVARRLGLKEE  152 (165)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCCGG
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcc
Confidence            88778888899999999999876

>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A

Probab=99.94  E-value=5.8e-25  Score=172.17  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=121.3

Q ss_pred             eeEeeccCCCHHHHHHHHHhhCC-CCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            2 EVEVKLRLKDSTAHQKLSNILSP-YHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         2 EiElK~~~~~~~~~~~l~~~l~~-~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      |||+|+++.+.+.+...+..++. .......|.|+|||||+++|++++++||||..+++..+++|+|+|..       +.
T Consensus        10 EiE~K~~v~d~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~-------~~   82 (179)
T 3n10_A           10 EVELKFRVMDLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGA-------ER   82 (179)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSS-------SB
T ss_pred             EEEEEEEcCCHHHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcc-------cc
Confidence            99999955566666554444443 23456789999999999999999999999998765678888886532       35


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      |+++++++.                 ..+..++..+|    +.+++.+.+.|..|.+++++|+||.+... |.++|||+|
T Consensus        83 e~e~~v~~~-----------------~~~~~~l~~lg----~~~~~~~~k~R~~~~~~~~~v~lD~v~~l-G~f~EiE~e  140 (179)
T 3n10_A           83 CEASNIEDV-----------------SKVQSMLATLG----YHPAFTIEKQRSIYFVGKFHITVDHLTGL-GDFAEIAIM  140 (179)
T ss_dssp             EEEEECSCH-----------------HHHHHHHHHTT----CEEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEEEE
T ss_pred             ceeeccCCH-----------------HHHHHHHHhCC----CeEEEEEEEEEEEEEECCEEEEEEeccCC-CcEEEEEEE
Confidence            899888543                 23455667767    89999999999999999999999998754 568999999


Q ss_pred             ecCcc---hHHHHHHHHHHhCCCcccc
Q 041449          161 SLEPE---RDRKLIEGLLEENGIEYDF  184 (204)
Q Consensus       161 l~~g~---~~~~~~~~~l~~~~i~~~~  184 (204)
                      ++++.   .+...+..+++++||+...
T Consensus       141 ~~~~~~~~~~~~~~~~l~~~LGl~~~~  167 (179)
T 3n10_A          141 TDDATELDKLKAECRDFANTFGLQVDQ  167 (179)
T ss_dssp             ESCGGGHHHHHHHHHHHHHHHTCCGGG
T ss_pred             eCCCccHHHHHHHHHHHHHHcCcChhh
Confidence            99874   5677889999999998654

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2

Probab=99.90  E-value=4.1e-22  Score=156.02  Aligned_cols=151  Identities=23%  Similarity=0.229  Sum_probs=121.5

Q ss_pred             eeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeeeE
Q 041449            2 EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQE   81 (204)
Q Consensus         2 EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~E   81 (204)
                      |++.++ .++.+.+...+..++........|+|+|||||++      .+||||....+.++++|+|+|. . +....+.|
T Consensus        10 ~~~~~~-~vd~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~-g~~k~~~E   80 (179)
T 1yem_A           10 EVEIKF-KIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-D-ENNEEFYE   80 (179)
T ss_dssp             EEEEEE-EECHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-S-SSSCEEEE
T ss_pred             ceeeeE-ecCHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-C-CCccceeE
Confidence            788999 5688888877777665555678899999999987      7999997533579999999998 3 23344568


Q ss_pred             eeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEEe
Q 041449           82 LEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECES  161 (204)
Q Consensus        82 ~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElEl  161 (204)
                      ++.+|++.                 +.+..+|..+|    +.+++.+.+.|..|.++++.|+||...+. |.+.|||+++
T Consensus        81 ~e~~v~d~-----------------~~~~~iL~~LG----~~~~~~i~K~R~~~~~~~~~i~lD~~~~l-G~f~EIE~~~  138 (179)
T 1yem_A           81 VEFEIGDF-----------------EKAVEVFKRLG----FKIQATIKKKRWVYKLNGVTLEVNRVEGI-GDFVDIEVIS  138 (179)
T ss_dssp             EEEEESCH-----------------HHHHHHHHHTT----CCEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEEEEC
T ss_pred             EEEEeCCH-----------------HHHHHHHHHCC----CcEEEEEEEEEEEEEECCEEEEEEecCCC-CCEEEEEEec
Confidence            88887432                 34566778888    67889999999999999999999998754 3456999999


Q ss_pred             cCcchHHHHHHHHHHhCCCccc
Q 041449          162 LEPERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       162 ~~g~~~~~~~~~~l~~~~i~~~  183 (204)
                      .+.+.+...+.++++++||+..
T Consensus       139 ~~~e~~~~~~~~ll~~LGi~~~  160 (179)
T 1yem_A          139 DSPEEAKEKIWEVAKMLGLKEE  160 (179)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCGG
T ss_pred             CChHHHHHHHHHHHHHcCCChh
Confidence            8777888899999999999876

>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2

Probab=99.07  E-value=8.1e-10  Score=83.89  Aligned_cols=118  Identities=20%  Similarity=0.197  Sum_probs=74.8

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCee-eEEEEecCCCeEEEEEccCCcccCCceee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAV-LRLRFYNLNSHCILSLKAKPTISDGISRV   79 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~-LRiR~~~~~~~~~~TlK~~~~~~~gl~~~   79 (204)
                      ||||.|| ++....       +  .......+...|+.+++      +.+ +|||..  |+++.+|+|+++    |++| 
T Consensus         4 ~EIERKF-LV~~~~-------~--~~~~~~~i~QgYl~~~~------~~~~vRvR~~--g~~~~lT~Kg~~----g~~R-   60 (153)
T 2fbl_A            4 TEIERKF-LVATFP-------D--GELHAVPLRQGYLTTPT------DSIELRLRQQ--GTEYFMTLKSEG----GLSR-   60 (153)
T ss_dssp             CCEEEEE-EESSCC-------C--SCCEEEEEEEEESSCTT------SSSEEEEEEE--TTEEEEEEEC-----------
T ss_pred             eEEEEEE-EEcCCC-------c--ccCCCeEEEEEEecCCC------CceEEEEEEe--CCEEEEEEEcCC----Ccee-
Confidence            6999999 775432       1  12234667888999873      446 999999  679999999887    6654 


Q ss_pred             eEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCC-eEEEecceecCCcceeEEE
Q 041449           80 QELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKG-LKLELDETTYGFGTSYEIE  158 (204)
Q Consensus        80 ~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~-~el~lD~~~~~~~~~~EiE  158 (204)
                      .|+|.+|+.+++.                  .++..+.       -..+.++|..+.+++ ..+.+|.-.......+=+|
T Consensus        61 ~E~E~~I~~~~~~------------------~ll~~~~-------~~~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aE  115 (153)
T 2fbl_A           61 QEYEIQIDVTQFE------------------MLWPATE-------GRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVE  115 (153)
T ss_dssp             CEEEEEECHHHHH------------------HHGGGGT-------TSEEEEEEEEEECTTCCEEEEEEECGGGTTCEEEE
T ss_pred             EEEEEECCHHHHH------------------HHHhhCC-------CCEEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEE
Confidence            5999999665433                  2333221       124588999999998 8999997533222234456


Q ss_pred             EEecCcch
Q 041449          159 CESLEPER  166 (204)
Q Consensus       159 lEl~~g~~  166 (204)
                      +|+.+.++
T Consensus       116 vE~~~e~e  123 (153)
T 2fbl_A          116 VEFLSEDA  123 (153)
T ss_dssp             EEESSHHH
T ss_pred             EEecCccc
Confidence            66655543

>3g3t_A Vacuolar transporter chaperone 4; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3g3q_A* 3g3r_A 3g3u_A

Probab=98.98  E-value=1.6e-08  Score=84.44  Aligned_cols=195  Identities=14%  Similarity=0.098  Sum_probs=117.8

Q ss_pred             eEeeccCCCHHHHHHHHHhhCCCC-----C-------cceeEeeeeeeCCChhhhhc-------CeeeEEEEecC--CCe
Q 041449            3 VEVKLRLKDSTAHQKLSNILSPYH-----K-------QTLFQENIFFDDKDSKLSSN-------AAVLRLRFYNL--NSH   61 (204)
Q Consensus         3 iElK~~~~~~~~~~~l~~~l~~~~-----~-------~~~~q~n~YfDTpd~~L~~~-------~~~LRiR~~~~--~~~   61 (204)
                      +|.|+ +++++++..|...+....     .       .....+|+|||||+++|...       ...||||.+++  ...
T Consensus        12 ~e~KY-~v~~~~~~~lk~~l~~~l~vl~~~~~~~~~~~~~~I~SlYFDt~~~~ly~~~l~k~~~r~KlRlR~Yg~~~~~~   90 (295)
T 3g3t_A           12 QTTKY-WVHPDNITELKLIILKHLPVLVFNTNKEFEREDSAITSIYFDNENLDLYYGRLRKDEGAEAHRLRWYGGMSTDT   90 (295)
T ss_dssp             EEEEE-EECGGGHHHHHHHHHTTSCBC--------CGGGGEEEEEEEECTTCHHHHHHHTTCTTCEEEEEEEESSTTCCE
T ss_pred             EEEEE-EEcHHHHHHHHHHHHHhCCccccCCccccCCCCceEEEEEecCCCHHHHHHHhcCCCCCcEEEEEEcCCCCCCc
Confidence            69999 999999987776633211     1       22478999999999999864       35999999974  267


Q ss_pred             EEEEEccCCccc-CCceeeeEeeecCCchhhhhhhhCCCccCC----c------c---HHHHHHHHHHcC--C-CCceEE
Q 041449           62 CILSLKAKPTIS-DGISRVQELEEPVPLATATESVAKPQLLGQ----I------D---SKIMKMVKQEYG--V-GDEFVC  124 (204)
Q Consensus        62 ~~~TlK~~~~~~-~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~----~------~---~~~~~~ll~~~~--~-~~~l~~  124 (204)
                      ..+.+|.....- +|.+.  +...+++..++..++...-.+..    +      +   .....+++..+.  + ...|+|
T Consensus        91 ifLE~K~k~~~~~~~~~~--K~R~~l~~~~~~~~l~g~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~Ei~~~~~~~~L~P  168 (295)
T 3g3t_A           91 IFVERKTHREDWTGEKSV--KARFALKERHVNDFLKGKYTVDQVFAKMRKEGKKPMNEIENLEALASEIQYVMLKKKLRP  168 (295)
T ss_dssp             EEEEEEECCCGGGTCCCE--EEEEEEEGGGHHHHHHTSSCHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             EEEEEEEecCCCCCCceE--EEEEeeCHHHHHHHHcCCcchhHHHHHhhhccccchhccchhHHHHHHHHHHHhhcCcce
Confidence            899999886422 34432  55577777777666663111000    0      0   001112222110  0 112788


Q ss_pred             EeeeEEEEEEEEeCC---eEEEeccee-c-C-C---------cc----------------eeE------EEEEecCc---
Q 041449          125 LGGFKNVRAVYEWKG---LKLELDETT-Y-G-F---------GT----------------SYE------IECESLEP---  164 (204)
Q Consensus       125 ~~~~~~~R~~~~~~~---~el~lD~~~-~-~-~---------~~----------------~~E------iElEl~~g---  164 (204)
                      +..+.=.|..|...+   +-|++|.+- + . .         +.                ..|      .=||+|-.   
T Consensus       169 ~~~~~Y~R~Af~~~~D~~vRIT~Dt~l~~~red~~d~~~r~~~~w~r~d~~~~~p~~~l~~~~~~~fp~aVlEvK~~~~~  248 (295)
T 3g3t_A          169 VVRSFYNRTAFQLPGDARVRISLDTELTMVREDNFDGVDRTHKNWRRTDIGVDWPFKQLDDKDICRFPYAVLEVKLQTQL  248 (295)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEEEEECCCTTSCCSSTTSSSCSSCSSCTTCTTSCGGGEEECSCEEEEEEEEECT
T ss_pred             eEEEEEEEEEeEcCCCCCEEEEEecCceeeecccccccccCccccccccccccCcccccCcccccccchhheeeeccccc
Confidence            766666777776643   556666431 1 0 0         00                012      34566533   


Q ss_pred             -chHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCCCc
Q 041449          165 -ERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGW  201 (204)
Q Consensus       165 -~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~~~  201 (204)
                       .....++.+++..+++...+ ..||+..+++...|+-
T Consensus       249 ~~~~P~Wi~~Ll~~~~v~~~p-~FSKY~~G~A~L~~~~  285 (295)
T 3g3t_A          249 GQEPPEWVRELVGSHLVEPVP-KFSKFIHGVATLLNDK  285 (295)
T ss_dssp             TCCCCHHHHHHHTSTTCEECC-CCCHHHHHHHHHTTTT
T ss_pred             cccCcHHHHHHHHhCCceECC-CcCHHHHHHHHhCccc
Confidence             24567999999988887775 3799999887665543

>3g3o_A Vacuolar transporter chaperone 2; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 2.10A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0031  Score=54.06  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             eeEeeeeeeCCChhhhhcC-------eeeEEEEecC---CCeEEEEEccCCcc-cCC-ceeeeEeeecCCchhhhhhhh
Q 041449           30 LFQENIFFDDKDSKLSSNA-------AVLRLRFYNL---NSHCILSLKAKPTI-SDG-ISRVQELEEPVPLATATESVA   96 (204)
Q Consensus        30 ~~q~n~YfDTpd~~L~~~~-------~~LRiR~~~~---~~~~~~TlK~~~~~-~~g-l~~~~E~e~~l~~~~~~~~l~   96 (204)
                      .+.+++|||||+++|....       ..||||.+|.   .....+..|..... ..| + ...+...++....+..+|.
T Consensus       115 ~tI~SLYFDt~d~~lY~~kl~k~~~r~KlRlRwYg~~~d~~~IFLE~K~K~~~~~tg~~-v~~KrR~~Lk~k~v~~fL~  192 (392)
T 3g3o_A          115 PLINTLYFDNEHFELYNDKLLKLNSAPTLRLRWTGQLSDKPDIFLEKKTLIEDEATGKS-EFDLTKLQLKQKFINGFIF  192 (392)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHTCTTCCEEEEEEESCGGGCCCEEEEEEEEC-------C-CEEEEEEEECGGGHHHHHH
T ss_pred             CcEEEEEecCCCHHHHHHHhcCCCCCcEEEEEEeCCCCCCCCEEEEEEEecCCCccccc-ceeEEEeeeCHHHHHHHHh
Confidence            4679999999999997765       4999999974   35788888876542 112 1 1025568888887777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1yema_	163	d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococ	5e-13
d2acaa1	174	d.63.1.2 (A:8-181) Putative adenylate cyclase VP17	5e-13
d2jmua1	223	d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPas	7e-12

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]} Length = 163

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 62.1 bits (150), Expect = 5e-13
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 31/182 (17%)

Query: 2   EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSH 61
           EVE+K ++K       L+   +P   +   QE+++F+    KL      LR+R  +    
Sbjct: 2   EVEIKFKIKLEDFLHTLNT-FNPEFVRYEEQEDVYFEVPRPKL------LRIRGVHNLKK 54

Query: 62  CILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDE 121
             L+ K +    +     +   E                           V +  G    
Sbjct: 55  YYLTFK-EILDENNEEFYEVEFEIGDFEK------------------AVEVFKRLG---- 91

Query: 122 FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIE 181
           F      K  R VY+  G+ LE++    G G   +IE  S  PE  ++ I  + +  G++
Sbjct: 92  FKIQATIKKKRWVYKLNGVTLEVNRVE-GIGDFVDIEVISDSPEEAKEKIWEVAKMLGLK 150

Query: 182 YD 183
            +
Sbjct: 151 EE 152

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]} Length = 174

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 5e-13
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 33/187 (17%)

Query: 1   MEVEVKLRLKDSTA-HQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLN 59
            EVE+K R+K+  A    +  I      +   + + F+D     L+     L LR     
Sbjct: 4   FEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPA 63

Query: 60  SHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVG 119
              +  +K         + + +L+    +            +G                 
Sbjct: 64  GIKLWIVKGPEADRCEATNITKLDSAQSMLEN---------MG----------------- 97

Query: 120 DEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECES---LEPERDRKLIEGLLE 176
             +  +   K +R+++      + LD    GFG   E    +       R R+ +  L +
Sbjct: 98  --YEVIQCSKKIRSIFFVGEFHITLDFLD-GFGHFAEFAIMTDDETALARYRERLVALAQ 154

Query: 177 ENGIEYD 183
           +  +   
Sbjct: 155 QFHLSEA 161

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]} Length = 223

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (145), Expect = 7e-12
 Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 25/211 (11%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNS 60
           +EVE K      T  +      +  H+ T    + ++D  +  L  +   LR R     S
Sbjct: 5   IEVERKFAPGPDTEERLQELGATLEHRVT--FRDTYYDTSELSLMLSDHWLRQR---EGS 59

Query: 61  HCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD 120
              L       +S   +   E+     +      +          + +  ++        
Sbjct: 60  GWELKCPGVTGVSGPHNEYVEVTSEAAIVAQLFELLGSGEQK--PAGVAAVLG-----SL 112

Query: 121 EFVCLGGFKNVRAVY---------EWKGLKLELDETTYGFGTSYEIECESLEPERD---R 168
           +   +  F   R+ +         +   L ++LD   +G     E+E    E        
Sbjct: 113 KLQEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADFG-YAVGEVEAMVHEKAEVPAAL 171

Query: 169 KLIEGLLEENGIEYDFSDFSKFAVFRSGKLP 199
           + I  +    G+       +K  V+     P
Sbjct: 172 EKIITVSSMLGVPAQEEAPAKLMVYLQRFRP 202

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d2jmua1	223	Thiamine-triphosphatase (ThTPase) {Mouse (Mus musc	99.97
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	99.91
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	99.9
d2fbla1	150	Hypothetical protein NE1496 {Nitrosomonas europaea	98.3

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.9e-30  Score=207.08  Aligned_cols=185  Identities=16%  Similarity=0.157  Sum_probs=144.1

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      ||||+|| .++++..++|.+. +.......+|+|+||||||++|++++++||||.   ++.|+||+|+++...++++.+.
T Consensus         5 iEVE~Kf-~~~~~~~~~l~~~-~~~~~~~~~l~d~YfDtpd~~L~~~~~aLRiR~---~~~~~lt~k~~~~~~~~~~~~~   79 (223)
T d2jmua1           5 IEVERKF-APGPDTEERLQEL-GATLEHRVTFRDTYYDTSELSLMLSDHWLRQRE---GSGWELKCPGVTGVSGPHNEYV   79 (223)
T ss_dssp             EEEEEEE-EECTTHHHHHHHH-TCEEEEEEEEEEEEEECTTSHHHHTTCEEEEET---TTEEEEEECSCSSCCSSCCSCE
T ss_pred             EEEEEee-cCCHHHHHHHHHc-CCcccccEEEEEEEEcCCChhHHhCCceEEeEe---CCCceEEEecCCCCCcceeeec
Confidence            6999999 7888888887764 444566789999999999999999999999994   4689999999988878888888


Q ss_pred             EeeecCCchhhhh-hhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC---------CeEEEecceecC
Q 041449           81 ELEEPVPLATATE-SVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK---------GLKLELDETTYG  150 (204)
Q Consensus        81 E~e~~l~~~~~~~-~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~---------~~el~lD~~~~~  150 (204)
                      ||+.+++...... .+.  ...+  +...+..++..+|    |.+++++.+.|..|.+.         .+++++|.+...
T Consensus        80 E~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~lg----~~~~~~~~k~R~~~~l~~~~~~~~~~~~~v~lD~~~~~  151 (223)
T d2jmua1          80 EVTSEAAIVAQLFELLG--SGEQ--KPAGVAAVLGSLK----LQEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADFG  151 (223)
T ss_dssp             EECCHHHHHHHHHHHHT--CCSC--CCSSHHHHHHHHT----CEEEEEEEEEEEEEEEECCSTTSCCCEEEEEEEEETTT
T ss_pred             cccccccchhhhhhhcC--cccc--chhHHHHHHhhcC----CeEEEEEEEEEEEEEeccCCcccccceEEEEEEcccCC
Confidence            9998875432221 111  1111  2234677778877    89999999999999762         478899988654


Q ss_pred             CcceeEEEEEecCcc---hHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCC
Q 041449          151 FGTSYEIECESLEPE---RDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP  199 (204)
Q Consensus       151 ~~~~~EiElEl~~g~---~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~  199 (204)
                       +.++|||+|++++.   .+...+..++.++|+.......||.++++....|
T Consensus       152 -~~~~EiE~~~~~~~~~~~a~~~i~~~~~~lGl~~~~~~~skl~~~l~~~~p  202 (223)
T d2jmua1         152 -YAVGEVEAMVHEKAEVPAALEKIITVSSMLGVPAQEEAPAKLMVYLQRFRP  202 (223)
T ss_dssp             -EEEEEEEEEESCGGGHHHHHHHHHHHHHHHEEECCSSCCCHHHHHHHHHCH
T ss_pred             -ceEEEEEEEeCCcchHHHHHHHHHHHHHHcCCCcCcCCchHHHHHHHhcCc
Confidence             34699999998764   4677888899999998777667999999976654

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.91  E-value=2.2e-23  Score=160.52  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=121.5

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCC-CcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYH-KQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRV   79 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~-~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~   79 (204)
                      .|||+|+++.+++.+...+..++... .....|+|+|||||+++|++++.+||+|..+++..+.+|+|.+..       .
T Consensus         4 ~EiE~K~~~~d~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lR~R~~~~~~~~tl~~k~~~~-------~   76 (174)
T d2acaa1           4 FEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEA-------D   76 (174)
T ss_dssp             EEEEEEEEESCHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSST-------T
T ss_pred             eEEEEEEecCCHHHHHHHHHHcCCccccceEEEEEEEEECCCCchhhCceeeEEeecCCCcEEEEEEcccCC-------C
Confidence            39999996567888777777666432 345688999999999999999999999998655556666665532       1


Q ss_pred             eEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449           80 QELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC  159 (204)
Q Consensus        80 ~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl  159 (204)
                      .|++.+|++.                 ..+..++..+|    +.+++.+.+.|..|.+++++|+||.+.. .|.++|||+
T Consensus        77 ~e~e~~v~~~-----------------~~~~~il~~lg----~~~~~~~~k~R~~~~~~~~~v~lD~v~~-lg~f~EiE~  134 (174)
T d2acaa1          77 RCEATNITKL-----------------DSAQSMLENMG----YEVIQCSKKIRSIFFVGEFHITLDFLDG-FGHFAEFAI  134 (174)
T ss_dssp             BEEEEEBSCH-----------------HHHHHHHHHTT----CEEEEEEEEEEEEEEETTEEEEEEEETT-TEEEEEEEE
T ss_pred             ceEEEecCCH-----------------HHHHHHHHhCC----CceEEEEEEEEEEEEECCEEEEEEEecC-CCcEEEEEE
Confidence            3888887543                 24566778877    8999999999999999999999998763 356899999


Q ss_pred             EecCc---chHHHHHHHHHHhCCCccc
Q 041449          160 ESLEP---ERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       160 El~~g---~~~~~~~~~~l~~~~i~~~  183 (204)
                      ++.+.   +.+...+..+++++||...
T Consensus       135 ~~~~~~~~e~~~~~i~~~~~~LGi~~~  161 (174)
T d2acaa1         135 MTDDETALARYRERLVALAQQFHLSEA  161 (174)
T ss_dssp             EESCSGGGTTHHHHHHHHHHHTTCCGG
T ss_pred             EeCCccchHHHHHHHHHHHHHcCcCcc
Confidence            99775   3567789999999999864

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=3.6e-23  Score=157.81  Aligned_cols=152  Identities=24%  Similarity=0.281  Sum_probs=122.7

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      -|||+|| .++.+++...+..+++.......|.|+|||+|+.+|      ||+|..+++..+.+|+|++..  +|.+.+.
T Consensus         1 ~EvE~K~-~v~~~~~~~~L~~~ga~~~~~~~~~d~Yfd~p~~~l------lrvR~~~~~~~~~lt~K~~~~--~~~~~~~   71 (163)
T d1yema_           1 SEVEIKF-KIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKL------LRIRGVHNLKKYYLTFKEILD--ENNEEFY   71 (163)
T ss_dssp             CEEEEEE-EECHHHHHHHHHTTCCEEEEEEEEEEEEECCCTTEE------EEEEEETTTTEEEEEEEEECS--SSSCEEE
T ss_pred             CeEEEEE-EeChHHHHHHHHhcCCcccceEEEEEeEEccCChHH------hhhhhhcCCceEEEEEeCccC--CCCceEE
Confidence            3999999 578888877777777666677899999999998765      889987667799999997753  3555667


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE  160 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE  160 (204)
                      |||.+|++.                 +.+..++..+|    +.+++.+.+.|..|.+++++|++|... ..|.+.|||++
T Consensus        72 E~e~~v~~~-----------------~~~~~~l~~lg----~~~~~~~~K~R~~y~~~~~~i~lD~v~-~lg~f~EiE~~  129 (163)
T d1yema_          72 EVEFEIGDF-----------------EKAVEVFKRLG----FKIQATIKKKRWVYKLNGVTLEVNRVE-GIGDFVDIEVI  129 (163)
T ss_dssp             EEEEEESCH-----------------HHHHHHHHHTT----CCEEEEEEEEEEEEEETTEEEEEEEET-TTEEEEEEEEE
T ss_pred             EEEecccch-----------------HHHHHHHhhcC----ceEEEEEEEEEEEEEECCEEEEEEeeC-CCCcEEEEEEE
Confidence            999998543                 23455677777    789999999999999999999999765 23557899998


Q ss_pred             ecCcchHHHHHHHHHHhCCCccc
Q 041449          161 SLEPERDRKLIEGLLEENGIEYD  183 (204)
Q Consensus       161 l~~g~~~~~~~~~~l~~~~i~~~  183 (204)
                      ..+.+.+.+.+..+++++|+...
T Consensus       130 ~~~~~~~~~~i~~l~~~Lgl~~~  152 (163)
T d1yema_         130 SDSPEEAKEKIWEVAKMLGLKEE  152 (163)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCCGG
T ss_pred             ecChHHHHHHHHHHHHHcCCCcc
Confidence            88777788899999999998764

>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein NE1496
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.30  E-value=5e-06  Score=60.85  Aligned_cols=115  Identities=21%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449            1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ   80 (204)
Q Consensus         1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~   80 (204)
                      .|||.|| ++..         +...........-.|+.++.     .+...|||..  +..+++|+|++    +|+++ .
T Consensus         1 ~EIERKF-LV~~---------~~~~~~~~~~I~Q~YL~~~~-----~~~~vRiR~~--~~~~~lTiK~~----~g~~r-~   58 (150)
T d2fbla1           1 TEIERKF-LVAT---------FPDGELHAVPLRQGYLTTPT-----DSIELRLRQQ--GTEYFMTLKSE----GGLSR-Q   58 (150)
T ss_dssp             CCEEEEE-EESS---------CCCSCCEEEEEEEEESSCTT-----SSSEEEEEEE--TTEEEEEEEC-----------C
T ss_pred             CcceeEE-EeCc---------CCcccccCcEEEEEEeccCC-----CcEEEEEEEc--CCEEEEEEccC----CCcee-E
Confidence            4999999 8752         11111222334445876643     2356899988  67999999964    27765 5


Q ss_pred             EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCC-eEEEecc--eecCCcceeEE
Q 041449           81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKG-LKLELDE--TTYGFGTSYEI  157 (204)
Q Consensus        81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~-~el~lD~--~~~~~~~~~Ei  157 (204)
                      |+|.+++.++.                  ..++....       -..+.++|+.+.+.+ ....+|.  |...+  .+=.
T Consensus        59 E~E~ei~~~~~------------------~~L~~~~~-------~~~I~K~Ry~~~~~~~~~~evDvF~g~~~g--Lila  111 (150)
T d2fbla1          59 EYEIQIDVTQF------------------EMLWPATE-------GRRVEKTRYSGKLPDGQLFELDVFAGHLSP--LMLV  111 (150)
T ss_dssp             EEEEEECHHHH------------------HHHGGGGT-------TSEEEEEEEEEECTTCCEEEEEEECGGGTT--CEEE
T ss_pred             EEEeeccHHHH------------------HHHHhhCC-------CcceEEEEEEEEeCCCeEEEEEEECCCCcc--eEEE
Confidence            99998865532                  22322221       113578898888854 3345663  32222  2334


Q ss_pred             EEEecCc
Q 041449          158 ECESLEP  164 (204)
Q Consensus       158 ElEl~~g  164 (204)
                      |+|+.+.
T Consensus       112 EvE~~se  118 (150)
T d2fbla1         112 EVEFLSE  118 (150)
T ss_dssp             EEEESSH
T ss_pred             EEEecCc
Confidence            5555544