Citrus Sinensis ID: 041464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHccccHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEccEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccHHccHHHHHHHHHHHHccccccccccccEEEEEEEccccEEEEEEcccEEEEEHHHHcccccccHHHHHHHEEEHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MADHSAFFLISLLTLTAMQGIHavdytvsnraattpggmrfaneigaeytpNFIWRLFQQnteadrknipqvdlfiddmkpgeiaftsnngihygddfiqnipvdlikqeFSGVMYHemthanyvpegwakpgegtmwnqgHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Flexible Loop (DISEMBL)
MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Low Complexity Region (SEG)
MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Disordered region (IsUnstruct)
*****AFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYK*****
Disordered Region (DISOPRED)
****SAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG*
Disordered Region (DISEMBL)
MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Disordered Region (DISPRO)
*ADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224103679	227	predicted protein [Populus trichocarpa]	0.954	0.832	0.559	5e-63
388514459	225	unknown [Lotus japonicus]	0.944	0.831	0.524	3e-57
396318181	229	PRp27-like protein [Olea europaea subsp.	0.919	0.794	0.538	2e-56
255555255	225	conserved hypothetical protein [Ricinus	0.964	0.848	0.513	2e-55
388505150	224	unknown [Medicago truncatula]	0.954	0.843	0.484	1e-54
225429293	226	PREDICTED: uncharacterized protein LOC10	0.979	0.858	0.5	3e-54
27803890	226	NtPRp27-like protein [Solanum tuberosum]	0.944	0.827	0.504	1e-53
147784683	226	hypothetical protein VITISV_038846 [Viti	0.979	0.858	0.478	2e-52
374431273	226	pathogenesis-related protein 17 [Vitis p	0.979	0.858	0.478	2e-52
5360263	242	NtPRp27 [Nicotiana tabacum]	0.964	0.789	0.482	3e-52

>gi|224103679|ref|XP_002313151.1| predicted protein [Populus trichocarpa] gi|222849559|gb|EEE87106.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 156/227 (68%), Gaps = 38/227 (16%)

Query: 6   AFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPN-------FIWRLF 58
           + FL  LLTL+ + GI+AV+YTV+NRA TTPGG+RF+NE+G  YT         F WRLF
Sbjct: 5   SIFLAFLLTLSTLNGINAVEYTVTNRAPTTPGGIRFSNELGDNYTIKTMDQATIFFWRLF 64

Query: 59  QQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHE 118
           QQNTEADRK++P+V LF+DDM+  +IA+ SNN IH GDD+I+ I  D IK +F+GV+YHE
Sbjct: 65  QQNTEADRKDVPRVSLFVDDME--QIAYASNNEIHVGDDYIEGIKGD-IKWDFNGVLYHE 121

Query: 119 MTH---------------------------ANYVPEGWAKPGEGTMWNQGHSSVAARFLD 151
           M H                           ANY P  W KPG+G  W++G+  V ARFLD
Sbjct: 122 MAHTWQWDGSAGTKAPVGLIEGIADFMRLKANYAPSHWVKPGQGDSWDKGYD-VTARFLD 180

Query: 152 YCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           YCNDLRNGFVAELNKKMR  Y+DNFF+ELLGK +DQLW DYKA +GN
Sbjct: 181 YCNDLRNGFVAELNKKMRVTYSDNFFVELLGKPVDQLWRDYKANFGN 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514459|gb|AFK45291.1| unknown [Lotus japonicus]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/223 (52%), Positives = 146/223 (65%), Gaps = 36/223 (16%)

Query: 8   FLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGA-------EYTPNFIWRLFQQ 60
           F+  L+ LTAMQG  AVDYTV+N+A +TPGG+RF ++IG        +    FIWR+FQQ
Sbjct: 5   FIGLLIFLTAMQGTKAVDYTVTNKALSTPGGVRFRDQIGEASARQTLDSATQFIWRIFQQ 64

Query: 61  NTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMT 120
           NT ADRKN+ +V LFIDDM    +A+TSNN IH    ++ +   DL K+E SGV+YHEM 
Sbjct: 65  NTAADRKNVEKVSLFIDDMDG--VAYTSNNEIHLSARYVNSYGGDL-KREISGVLYHEMV 121

Query: 121 H-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCND 155
           H                         A+Y P  W KPG+G  W+ G+  V ARFLDYCN 
Sbjct: 122 HVRQWNGNGGAPGGLIEGIADYVRLKADYAPSHWVKPGQGNKWDHGYD-VTARFLDYCNS 180

Query: 156 LRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           L+NGFVAELNKKMR GY+D FF+++LGKS+DQLW DYKAKYGN
Sbjct: 181 LKNGFVAELNKKMRTGYSDQFFVQILGKSVDQLWTDYKAKYGN 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|396318181|gb|AFN85535.1| PRp27-like protein [Olea europaea subsp. europaea]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/219 (53%), Positives = 144/219 (65%), Gaps = 37/219 (16%)

Query: 11  SLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNFIWRLFQQNTE 63
           SL  L A+QGIHAVDYT +N AA TPGG+RF NEIG +Y+        NFIW++FQQ+T 
Sbjct: 13  SLAILAAIQGIHAVDYTFTNTAANTPGGVRFTNEIGEQYSIQTLDAATNFIWKIFQQDTT 72

Query: 64  -ADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH- 121
            ADRKN+ +V LFIDDM    +A+ SNN IH    +IQ    D +K E +GV+YHEMTH 
Sbjct: 73  PADRKNVQKVSLFIDDMDG--VAYASNNEIHVSARYIQGYSGD-VKTEITGVLYHEMTHI 129

Query: 122 ------------------------ANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLR 157
                                   A Y P  W KPGEG  W+QG+  V ARFLDYC+ LR
Sbjct: 130 WQWNGNGQAPGGLIEGIADYVRLKAGYAPSHWVKPGEGDRWDQGYD-VTARFLDYCDSLR 188

Query: 158 NGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 196
           +GFVAELNKKMRDGYN+ +F++LLGK++DQLW DYKAKY
Sbjct: 189 SGFVAELNKKMRDGYNNTYFVDLLGKTVDQLWMDYKAKY 227

Source: Olea europaea subsp. europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555255|ref|XP_002518664.1| conserved hypothetical protein [Ricinus communis] gi|223542045|gb|EEF43589.1| conserved hypothetical protein [Ricinus communis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 148/228 (64%), Gaps = 37/228 (16%)

Query: 1   MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNF 53
           M+ H+   L  L+TL  +QG +AV+YTV+N A +T GG RF+ EIG +Y+        +F
Sbjct: 1   MSPHT-LILSLLVTLATIQGNYAVEYTVTNTAGSTAGGARFSAEIGEDYSLQTLSAATDF 59

Query: 54  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
           IWRLFQQ    DRKN+ +V LFIDDM    +A+ SNN IH    +I     DL K+E++G
Sbjct: 60  IWRLFQQPNAEDRKNVQKVSLFIDDMDG--VAYASNNEIHVSARYIGGYSGDL-KREYTG 116

Query: 114 VMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR 148
           V+YHEMTH                         ANY P  W +PG+G  W+QG+  V AR
Sbjct: 117 VIYHEMTHIWQWNGNGQAPGGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYD-VTAR 175

Query: 149 FLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 196
           FLDYCNDLRNGFVAELNKKM+DGY+D FF++LLGKS+DQLW+DYKAKY
Sbjct: 176 FLDYCNDLRNGFVAELNKKMKDGYSDQFFVDLLGKSVDQLWSDYKAKY 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505150|gb|AFK40641.1| unknown [Medicago truncatula]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 149/227 (65%), Gaps = 38/227 (16%)

Query: 4   HSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYTPN-------FIWR 56
           H+ +F + LL +  + GI AVDY+V+N A +TPGG+RF +++GA+Y          FIWR
Sbjct: 2   HTLYFFLVLLAI--IHGIQAVDYSVTNNALSTPGGVRFRDQLGAQYATQTLDSATQFIWR 59

Query: 57  LFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMY 116
           +FQQN  ADRKN+ +V LF+DDM    +A+TSNN IH    ++ +   DL ++E +GV+Y
Sbjct: 60  VFQQNNPADRKNVQKVSLFVDDMDG--VAYTSNNEIHLSARYVNSYGGDL-RKEITGVLY 116

Query: 117 HEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAARFLD 151
           HEMTH                         ANY P  W KPG+G  W+QG+  V ARFLD
Sbjct: 117 HEMTHVWQWNGNGQANGGLIEGIADYVRLKANYAPSHWVKPGQGNKWDQGYD-VTARFLD 175

Query: 152 YCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           YC+ LR+GFVAELNK MR+GY+D FF++LLGK+++QLW +YKAKYGN
Sbjct: 176 YCDTLRSGFVAELNKLMRNGYSDQFFVQLLGKTVNQLWTEYKAKYGN 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429293|ref|XP_002269365.1| PREDICTED: uncharacterized protein LOC100259535 [Vitis vinifera]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 146/230 (63%), Gaps = 36/230 (15%)

Query: 1   MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNF 53
           MA +  F L SL+ L A+ GIHAV+Y V+N A  + GG+RF N+IG EY+         F
Sbjct: 1   MAYNHMFLLSSLVVLAALHGIHAVEYVVTNNAENSTGGVRFNNDIGIEYSRQTLVSATEF 60

Query: 54  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
           IWRLFQQNT ADRK++ +V L I++     IA+  N+ IH   ++I+    DL K EF+G
Sbjct: 61  IWRLFQQNTPADRKDVQRVTLIIENTDG--IAYAENDEIHVNANYIKEYSGDL-KGEFTG 117

Query: 114 VMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR 148
           V+YHEMTH                         ANY+P  W +PG+G  W+QG+  V AR
Sbjct: 118 VLYHEMTHIWQWNGNGQTPGGLIEGIADFVRLKANYIPSHWVQPGQGDRWDQGYD-VTAR 176

Query: 149 FLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           FLDYCN LRNGFVAELNKKMR GY+ +FF+ELL  ++DQLW DYKAKYGN
Sbjct: 177 FLDYCNSLRNGFVAELNKKMRSGYSADFFVELLRNNVDQLWTDYKAKYGN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27803890|gb|AAO22065.1| NtPRp27-like protein [Solanum tuberosum]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 147/224 (65%), Gaps = 37/224 (16%)

Query: 7   FFLISLLTLTAM-QGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNFIWRLF 58
           FF+ SL  L    Q I AVDY+V+N AA TPGG RF  +IGA+Y+        +FIW +F
Sbjct: 6   FFISSLFVLAIFTQKIDAVDYSVTNTAANTPGGARFDRDIGAQYSQQTLVAATSFIWNIF 65

Query: 59  QQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHE 118
           QQN+ ADRKN+P+V +F+DDM    +A+ SNN IH    +IQ    D +++E +GV+YHE
Sbjct: 66  QQNSPADRKNVPKVSMFVDDMDG--VAYASNNEIHVSARYIQGYSGD-VRREITGVLYHE 122

Query: 119 MTH------------------ANYV-------PEGWAKPGEGTMWNQGHSSVAARFLDYC 153
            TH                  A+YV       P  W KPG+G  W+QG+  V A+FLDYC
Sbjct: 123 ATHVWQWNGNGGAPGGLIEGIADYVRLKAGLGPSHWVKPGQGNRWDQGYD-VTAQFLDYC 181

Query: 154 NDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG 197
           N LRNGFVAELNKKMR+GY+D FF++LLGK++DQLW+DYKAK+G
Sbjct: 182 NSLRNGFVAELNKKMRNGYSDQFFVDLLGKTVDQLWSDYKAKFG 225

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784683|emb|CAN65930.1| hypothetical protein VITISV_038846 [Vitis vinifera]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 141/230 (61%), Gaps = 36/230 (15%)

Query: 1   MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNF 53
           MA      L   + L A  GI AV+Y V+N A ++ GG+RF NEIG  Y+        +F
Sbjct: 1   MASRHIVLLSCFVFLAAQHGIQAVEYEVTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDF 60

Query: 54  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
           IW +FQQNT  +RK + +V L I++M    +A+ SNN IH   ++I +   D +K EF+G
Sbjct: 61  IWGVFQQNTPEERKTVQKVSLIIENMDG--VAYASNNEIHVNANYIGSYSGD-VKTEFTG 117

Query: 114 VMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR 148
           V+YHEMTH                         ANY P  W +PG+G  W+QG+  V AR
Sbjct: 118 VLYHEMTHIWQWNGNGQTPGGLIEGIADYVRLKANYAPSHWVQPGQGNRWDQGYD-VTAR 176

Query: 149 FLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           FLDYCN LRNGFVAELNKKMR GY+ +FF+ELLGK++DQLW DYKAKYGN
Sbjct: 177 FLDYCNSLRNGFVAELNKKMRSGYSADFFVELLGKTVDQLWTDYKAKYGN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374431273|gb|AEZ51831.1| pathogenesis-related protein 17 [Vitis pseudoreticulata]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 140/230 (60%), Gaps = 36/230 (15%)

Query: 1   MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNF 53
           MA      L   + L A  GI AV+Y V+N A ++ GG+RF NEIG  Y+        +F
Sbjct: 1   MASRHIVLLSCFVFLAAQHGIQAVEYEVTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDF 60

Query: 54  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
           IW +FQQNT  +RK + +V L I++     +A+ SNN IH   ++I +   D +K EF+G
Sbjct: 61  IWGVFQQNTPEERKTVQKVSLIIENTNG--VAYASNNEIHVNANYIGSYSGD-VKSEFTG 117

Query: 114 VMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR 148
           V+YHEMTH                         ANY P  W KPG+G  W+QG+  V AR
Sbjct: 118 VLYHEMTHIWQWNGNGQTPGGLIEGIADYVRLKANYAPSHWVKPGQGNRWDQGYD-VTAR 176

Query: 149 FLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 198
           FLDYCN LRNGFVAELNKKMR GY+ +FF+ELLGK++DQLW DYKAKYGN
Sbjct: 177 FLDYCNSLRNGFVAELNKKMRSGYSADFFVELLGKTVDQLWTDYKAKYGN 226

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5360263|dbj|BAA81904.1| NtPRp27 [Nicotiana tabacum]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 141/228 (61%), Gaps = 37/228 (16%)

Query: 2   ADHSAFFLISLLTLTAM-QGIHAVDYTVSNRAATTPGGMRFANEIGAEYT-------PNF 53
           A H  FF  SL  L    Q IHAVDY+V+N AA T GG RF  +IGA+Y+        +F
Sbjct: 17  AHHKIFFFYSLFVLAIFTQKIHAVDYSVTNTAANTAGGARFNRDIGAQYSQQTLAAATSF 76

Query: 54  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
           IW  FQQN  ADRKN+ +V +F+DDM    +A+ SNN IH    +IQ    D +++E +G
Sbjct: 77  IWNTFQQNFPADRKNVQKVSMFVDDMDG--VAYASNNEIHVSASYIQGYSGD-VRREITG 133

Query: 114 VMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR 148
           V+YHE TH                         A + P  W KPG+G  W+QG+  V AR
Sbjct: 134 VLYHESTHVWQWNGNGGAPGGLIEGIADYVRLKAGFAPSHWVKPGQGDRWDQGYD-VTAR 192

Query: 149 FLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 196
           FLDYCN LRNGFVA+LNKKMR GY++ FF++LLGK++DQLW+DYKAK+
Sbjct: 193 FLDYCNSLRNGFVAQLNKKMRTGYSNQFFIDLLGKTVDQLWSDYKAKF 240

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2041839	225	AT2G15220 [Arabidopsis thalian	0.424	0.373	0.611	2.9e-48
TAIR|locus:2041824	225	AT2G15130 "AT2G15130" [Arabido	0.424	0.373	0.6	2.2e-25
TAIR|locus:2041819	102	AT2G15170 "AT2G15170" [Arabido	0.454	0.882	0.365	7.4e-11
UNIPROTKB|G4NF67	313	MGG_04184 "Uncharacterized pro	0.323	0.204	0.366	0.00013

TAIR|locus:2041839 AT2G15220 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 52/85 (61%), Positives = 63/85 (74%)

Query:   113 GVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGY 172
             G+  +    A Y P  W  PG G  W+QG+  V ARFLDYCN LRNGFVAELNKKMR+GY
Sbjct:   141 GIADYVRLKAGYAPSHWVGPGRGDRWDQGYD-VTARFLDYCNGLRNGFVAELNKKMRNGY 199

Query:   173 NDNFFMELLGKSIDQLWNDYKAKYG 197
             +D FF++LLGK ++QLW +YKAKYG
Sbjct:   200 SDGFFVDLLGKDVNQLWREYKAKYG 224

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2041824 AT2G15130 "AT2G15130" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/85 (60%), Positives = 62/85 (72%)

Query:   113 GVMYHEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGY 172
             G+  +    A YV   W +PG G  W+QG+  V ARFL+YCNDLRNGFVAELNKKMR  Y
Sbjct:   141 GIADYVRLKAGYVASHWVRPGGGDRWDQGYD-VTARFLEYCNDLRNGFVAELNKKMRSDY 199

Query:   173 NDNFFMELLGKSIDQLWNDYKAKYG 197
             ND FF++LLGK ++QLW +YKA YG
Sbjct:   200 NDGFFVDLLGKDVNQLWREYKANYG 224

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2041819 AT2G15170 "AT2G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query:     1 MADHSAFFLISLLTLTAMQGIHAVDYTVSNRAATTPGGMRFANEIGA-EY-------TPN 52
             MA H  F +I L+   +M  ++AVD+ V +    +PGG +F +EIG   Y         +
Sbjct:     1 MACHEIFLVICLMLAVSM--VNAVDFFVVDNTGDSPGGRKFRDEIGGVSYGKQSVRSATD 58

Query:    53 FIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNG--IHY 94
             F WRLFQQ    DRK I  + LFI++     +A+ +N G  IH+
Sbjct:    59 FTWRLFQQTNPLDRKTITNITLFIENSN--SVAYNTNLGKEIHF 100

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

UNIPROTKB|G4NF67 MGG_04184 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 108 (43.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query:   126 PEGWAKPGEGTMWNQGHSSVAARFLDY--CNDLRNGFVAELNKKMRDG-YNDN-FFMELL 181
             P  W K  EG+ W++G+   A  FLDY  C    +G V ++N+ +R   Y +  F+ E++
Sbjct:   226 PPHWEKDLEGS-WDRGYQHTAY-FLDYLECR-FGDGTVRKINEGLRTRKYEEKPFWTEIV 282

Query:   182 GKSIDQLWNDY 192
             G+ ++QLW DY
Sbjct:   283 GRPVEQLWADY 293

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam04450	203	pfam04450, BSP, Peptidase of plants and bacteria	6e-47

>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria

 Score =  152 bits (386), Expect = 6e-47
 Identities = 75/209 (35%), Positives = 99/209 (47%), Gaps = 43/209 (20%)

Query: 21  IHAVDYTVSNRAATTPGGMRFANEIG-AE----YTPNFIWRLFQQNTEADRKNIPQVDLF 75
             AV   + N    TPGG RF   +  AE        F+WR+  Q    DR  +  V L 
Sbjct: 1   APAVTLEIIN--PDTPGGKRFDRLVPDAEQTLSDASRFVWRILYQPPS-DRPPVRSVTLT 57

Query: 76  IDDMKPGEIAFTS----NNGIHYGDDFIQNIP--VDLIKQEFSGVMYHEMTH-------- 121
           +DD+    +A+TS    +  IH    +I+      D +K E +GV+YHE+ H        
Sbjct: 58  LDDI--DGVAYTSGDDDHKEIHLSARYIEGSSAENDDVKDEVTGVLYHELVHVWQWDGTG 115

Query: 122 -----------------ANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAEL 164
                            A Y P  W +PG G  W+ G+  V ARFLDY  D   GFV +L
Sbjct: 116 RAPGGLIEGIADYVRLKAGYAPPHWKRPGGGDRWDDGYD-VTARFLDYLEDRSPGFVRKL 174

Query: 165 NKKM-RDGYNDNFFMELLGKSIDQLWNDY 192
           N KM RDGY D FF ++LGK +DQLW +Y
Sbjct: 175 NDKMLRDGYFDGFFKQILGKDVDQLWREY 203

These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens. Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	100.0
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	95.9
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	95.61
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	94.62
PF13203	292	DUF2201_N: Putative metallopeptidase domain	94.58
PRK04860	160	hypothetical protein; Provisional	94.4
PRK04351	149	hypothetical protein; Provisional	93.73
PRK03072	288	heat shock protein HtpX; Provisional	93.63
smart00731	146	SprT SprT homologues. Predicted to have roles in t	93.58
PRK03001	283	M48 family peptidase; Provisional	93.33
COG0501	302	HtpX Zn-dependent protease with chaperone function	93.26
PRK05457	284	heat shock protein HtpX; Provisional	93.14
PRK01345	317	heat shock protein HtpX; Provisional	93.02
PRK03982	288	heat shock protein HtpX; Provisional	92.63
PRK04897	298	heat shock protein HtpX; Provisional	92.6
COG4783	484	Putative Zn-dependent protease, contains TPR repea	91.94
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	91.81
PRK02391	296	heat shock protein HtpX; Provisional	90.79
PRK02870	336	heat shock protein HtpX; Provisional	90.39
PRK01265	324	heat shock protein HtpX; Provisional	90.03
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	80.84
PF10460	366	Peptidase_M30: Peptidase M30; InterPro: IPR019501	80.6

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=100.00  E-value=3.2e-56  Score=377.66  Aligned_cols=165  Identities=41%  Similarity=0.847  Sum_probs=149.0

Q ss_pred             eEEEEEeCCCCCcccchhhhccCCCchh-----HHHHHHhccCCCCCCCCCCeEEEEEccCCCCceeEecC----CeEEE
Q 041464           24 VDYTVSNRAATTPGGMRFANEIGAEYTP-----NFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSN----NGIHY   94 (198)
Q Consensus        24 ~~~~~~n~a~~t~gg~rF~~~i~~~~a~-----~~i~~lf~y~~p~~rk~v~~Vtl~l~d~~~~GVA~t~g----~~I~~   94 (198)
                      +++++++.+++||||+||++.|+++...     .+|+++| |++|+++|+|++|||+|++|  +|||||+|    .+|||
T Consensus         2 p~~~l~v~n~~s~Gg~~F~~~~~~a~~~L~~a~~~V~~~l-y~~~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~~I~~   78 (205)
T PF04450_consen    2 PKFRLEVNNLDSPGGRRFDRFIPDAEQVLRDASRFVWRLL-YQSPADRKPVRSVTLILDDM--DGVAYTSGDDDHKEIHF   78 (205)
T ss_pred             CeEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHHHHHh-CCCCCCCCcccEEEEEEECC--CeeEEEecCCCccEEEE
Confidence            3445555559999999999999555433     8999998 66699999999999999999  99999999    79999


Q ss_pred             cccccccCCc-hhhhHHHHHHHHHHHhh-------------------------cCCCCCCCcCCCCCCCCCCCcchhHhH
Q 041464           95 GDDFIQNIPV-DLIKQEFSGVMYHEMTH-------------------------ANYVPEGWAKPGEGTMWNQGHSSVAAR  148 (198)
Q Consensus        95 S~~~i~~~~~-d~~~~Ei~GVl~HE~vH-------------------------Ag~ap~hw~~p~~g~~wd~GY~~~TA~  148 (198)
                      |++||+++++ +++++||+|||+|||||                         |||+|+||++|+.|++||+|| ++|||
T Consensus        79 S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~~~~~P~~liEGIADyVRl~aG~~~~~w~~p~~~~~wd~gY-~~TA~  157 (205)
T PF04450_consen   79 SARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDGRGTAPGGLIEGIADYVRLKAGYAPPHWKRPGGGDSWDDGY-RTTAR  157 (205)
T ss_pred             eHHHHhhcccccchHHHHHHHHHHHHHHHhhcCCCCCCChhheecHHHHHHHHcCCCCccccCCCCCCCccccc-HHHHH
Confidence            9999999984 34999999999999999                         899999999998888999999 99999


Q ss_pred             HHHHHhh--cCCCHHHHHHHHHhc-cC-CHHHHHHHhCCCHHHHHHHH
Q 041464          149 FLDYCND--LRNGFVAELNKKMRD-GY-NDNFFMELLGKSIDQLWNDY  192 (198)
Q Consensus       149 FL~wle~--~~~gfV~~LN~~mr~-~y-sd~~~~~l~G~~v~~LW~eY  192 (198)
                      ||+|||+  +++|||++||++||+ +| ++++|+++||++|++||+||
T Consensus       158 FL~wle~~~~~~gfV~~LN~~m~~~~y~~~~~~~~l~G~~v~~LW~eY  205 (205)
T PF04450_consen  158 FLDWLEDNRYGKGFVRRLNEAMRRDKYSSDDFWKELLGKPVDELWAEY  205 (205)
T ss_pred             HHHHHHhcccCccHHHHHHHHHhhCCCCcHhHHHHHHCcCHHHHHhhC
Confidence            9999997  799999999999965 59 89999999999999999998

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=95.90  E-value=0.011  Score=46.88  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             EEEEEc-cCC-CCceeEecCC---eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           72 VDLFID-DMK-PGEIAFTSNN---GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        72 Vtl~l~-d~~-~~GVA~t~g~---~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      +.+++. .+. .-|.....+.   +|.+|+.+++..+    ..|+..+|.|||+|
T Consensus        20 ~~i~~~~~~~~~~G~~~~~~~~~~~I~ls~~~~~~~~----~~~~~~tL~HEm~H   70 (157)
T PF10263_consen   20 IPITWSKRMKRTAGRCRYKRRSPCEIRLSPKLLDRNP----EEELIDTLLHEMAH   70 (157)
T ss_pred             eEEEEECCCCCceEEEEECCCCceEEEECHHHHHhhH----HHHHHHHHHHHHHH
Confidence            666666 442 3677666666   9999999998843    45899999999999

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=95.61  E-value=0.0065  Score=50.17  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             CCCeEEEEEccCCCCceeEecCCeEEEcccccccCCchhhhHHHHHHHHHHHhh-------cCCCCC--CCcC---CCCC
Q 041464           68 NIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH-------ANYVPE--GWAK---PGEG  135 (198)
Q Consensus        68 ~v~~Vtl~l~d~~~~GVA~t~g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH-------Ag~ap~--hw~~---p~~g  135 (198)
                      +-.++.+..+-.+ .|+||---++|.|+|.++.....|    +|.+|+-||++|       -||.|-  -|+.   .-.|
T Consensus        23 ~~p~~~~n~Rg~t-aG~ayL~~~~I~lNP~ll~en~~~----f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV~~   97 (156)
T COG3091          23 FRPKASYNQRGRT-AGGAYLLKSEIRLNPKLLEENGED----FIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQVLG   97 (156)
T ss_pred             CCcceehhhhhhh-cchhhccccccccCHHHHHHccHH----HHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHhCC
Confidence            3345777777643 899999888999999999987654    799999999999       677763  4531   0011


Q ss_pred             CCCCC--Cc---chhHhHHHHHHh-hcCCCHHHHHHHHHhc
Q 041464          136 TMWNQ--GH---SSVAARFLDYCN-DLRNGFVAELNKKMRD  170 (198)
Q Consensus       136 ~~wd~--GY---~~~TA~FL~wle-~~~~gfV~~LN~~mr~  170 (198)
                      -+.+.  .+   +..+..|+-.|. ....=.||+.|..+|.
T Consensus        98 l~~~~~h~~~~~~v~~~~~~Y~C~C~q~~l~~RRhn~~~~g  138 (156)
T COG3091          98 LRFCRTHQFEVQSVRRTTYPYRCQCQQHYLRIRRHNTVRRG  138 (156)
T ss_pred             CCCCccchHHHhhccccceeEEeecCCccchhhhccccccc
Confidence            11111  11   012256666666 3345567888877753

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=94.62  E-value=0.043  Score=40.21  Aligned_cols=46  Identities=24%  Similarity=0.464  Sum_probs=32.9

Q ss_pred             CCCeEEEEEc--------cCCCCceeEecCCeEEEcccccc-cCCchhhhHHHHHHHHHHHhh
Q 041464           68 NIPQVDLFID--------DMKPGEIAFTSNNGIHYGDDFIQ-NIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        68 ~v~~Vtl~l~--------d~~~~GVA~t~g~~I~~S~~~i~-~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      +...|.+-..        .+  .-.|+|.|+.|+|.+.-.. ..+.+      ..+|.||++|
T Consensus        17 dl~~Vrvh~~~~a~~~~~~~--~A~A~T~G~~I~f~~g~~~~~s~~~------~~llaHEl~H   71 (79)
T PF13699_consen   17 DLSDVRVHTGPAASRAAAAL--GARAFTVGNDIYFAPGKYNPDSPEG------RALLAHELAH   71 (79)
T ss_pred             CccceEEEeCCchhhhhhcc--CCeEEEECCEEEEcCCCcCCCCCCc------chhHhHHHHH
Confidence            3566776665        23  4589999999999765432 33445      5899999999

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=94.58  E-value=0.042  Score=48.23  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=31.1

Q ss_pred             CceeEecCCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           82 GEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        82 ~GVA~t~g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      -..++|.|..|+|++.|+.+.+.    .|+.+||.||+.|
T Consensus        35 ~~t~~tDg~~l~~nP~~~~~l~~----~~~~~~l~HevlH   70 (292)
T PF13203_consen   35 IPTAATDGRRLYYNPEFLESLSP----EERVGLLLHEVLH   70 (292)
T ss_pred             CceeeEcCcEEEECcHHHhcCCH----HHHHHHHHHHHHH
Confidence            35788899999999999987764    3789999999999

>PRK04860 hypothetical protein; Provisional

Probab=94.40  E-value=0.034  Score=46.02  Aligned_cols=47  Identities=19%  Similarity=0.247  Sum_probs=38.5

Q ss_pred             CeEEEEEccCCCCceeEecCCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           70 PQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        70 ~~Vtl~l~d~~~~GVA~t~g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      ..|++..+.-+ .|.|+-..++|.||+..++..+.    .++.+||-|||+|
T Consensus        27 p~~~f~~R~rt-aG~~~l~~~~I~~Np~ll~~~~~----~~l~~~v~HEl~H   73 (160)
T PRK04860         27 PKVSYTQRGTS-AGTAWLQSNEIRLNPVLLLENQQ----AFIDEVVPHELAH   73 (160)
T ss_pred             CEEEEeecchh-hcchhHhcCCeeeCHHHHhhCcH----HHHHhHHHHHHHH
Confidence            36788877532 78888888899999999887754    4789999999999

>PRK04351 hypothetical protein; Provisional

Probab=93.73  E-value=0.088  Score=43.02  Aligned_cols=46  Identities=15%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             eEEEEEccCCCCceeE-ecCCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           71 QVDLFIDDMKPGEIAF-TSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        71 ~Vtl~l~d~~~~GVA~-t~g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      +|++..+-- ..|.+| -..+.|.||+..+..++.+    +|.+||-|||.|
T Consensus        25 ~v~~n~Rlr-ttgG~~~l~~~~I~lnp~ll~~~~~~----~l~~vv~HElcH   71 (149)
T PRK04351         25 QAYFNKRLR-TTGGRYLLKDHHIEFNPKMLEEYGLE----ELIGIIKHELCH   71 (149)
T ss_pred             EEEEeccch-hhhheeecCCCeEEeCHHHHhhccHH----HHHhhHHHHHHH
Confidence            677766642 255555 5567999999999887654    689999999999

>PRK03072 heat shock protein HtpX; Provisional

Probab=93.63  E-value=0.095  Score=46.63  Aligned_cols=45  Identities=22%  Similarity=0.452  Sum_probs=32.3

Q ss_pred             CeEEEEEccCCCCceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           70 PQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        70 ~~Vtl~l~d~~~~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      .+| +++++-  ..-||++|.     .|-++...++..+.    +|+.|||.||+.|
T Consensus        88 p~v-yv~~~~--~~NAFa~G~~~~~~~v~vt~gLl~~l~~----~El~aVlAHElgH  137 (288)
T PRK03072         88 PRL-YISPTA--APNAFATGRNPRNAAVCCTEGILQILNE----RELRGVLGHELSH  137 (288)
T ss_pred             CCE-EEecCC--CCceEEecCCCCCcEEEecHHHHHhCCH----HHHHHHHHHHHHH
Confidence            344 345543  456888884     37777777766653    5999999999999

>smart00731 SprT SprT homologues

Probab=93.58  E-value=0.042  Score=43.96  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             eEEEEEccCCCCceeEec-CCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           71 QVDLFIDDMKPGEIAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        71 ~Vtl~l~d~~~~GVA~t~-g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      .|++.-+ |+..|=++.. ..+|.||+..+...+.+    +|.+||.|||+|
T Consensus        23 ~i~w~~r-~~~~~G~~~~~~~~I~ln~~l~~~~~~~----~l~~~l~HEm~H   69 (146)
T smart00731       23 KVVWNKR-LRKTGGRCLLKSAEIRLNPKLLTENGRD----RLRETLLHELCH   69 (146)
T ss_pred             EEEEehh-hhhhhHHhhcCCCEEEeCHHHHhhccHH----HHHhhHHHHHHH
Confidence            5555444 2212223443 56999999999876643    688999999999

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PRK03001 M48 family peptidase; Provisional

Probab=93.33  E-value=0.13  Score=45.47  Aligned_cols=46  Identities=26%  Similarity=0.543  Sum_probs=33.7

Q ss_pred             CCeEEEEEccCCCCceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           69 IPQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        69 v~~Vtl~l~d~~~~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      ..+| +++++-  .--||+.|.     .|-++...++..+    ++|+.+||.||+.|
T Consensus        84 ~p~v-~v~~~~--~~NAfa~G~~~~~~~Ivvt~gLl~~l~----~~El~aVlAHElgH  134 (283)
T PRK03001         84 MPKV-YLINED--QPNAFATGRNPEHAAVAATTGILRVLS----EREIRGVMAHELAH  134 (283)
T ss_pred             CCeE-EEecCC--CcceEEecCCCCCeEEEecHHHHhhCC----HHHHHHHHHHHHHH
Confidence            3444 344542  346888873     6999999998775    35999999999999

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=0.064  Score=46.38  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             eEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           85 AFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        85 A~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      |++.|+     .|-++..-++.-++    +||.+||.||+.|
T Consensus       130 AFa~g~~~~~~~V~vt~gLl~~l~~----dEl~aVlaHElgH  167 (302)
T COG0501         130 AFALGGGPKNGRVVVTTGLLDLLND----DELEAVLAHELGH  167 (302)
T ss_pred             ceecCCCCCCeeEEecHHHHhhCCH----HHHHHHHHHHHHH
Confidence            555543     99999999995554    4999999999999

>PRK05457 heat shock protein HtpX; Provisional

Probab=93.14  E-value=0.14  Score=45.51  Aligned_cols=47  Identities=23%  Similarity=0.411  Sum_probs=33.8

Q ss_pred             CCCeEEEEEccCCCCceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           68 NIPQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        68 ~v~~Vtl~l~d~~~~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      |+.+|- ++++-  .--|+++|.     .|-++...++.-+.    +|+.|||.||+.|
T Consensus        93 p~p~v~-v~~~~--~~NAfa~G~~~~~~~V~vt~gLl~~L~~----~El~aVlAHElgH  144 (284)
T PRK05457         93 GMPEVA-IYHSP--EINAFATGASKNNSLVAVSTGLLQNMSR----DEVEAVLAHEISH  144 (284)
T ss_pred             CCCCEE-EEeCC--CceEEEecCCCCCeEEEeehHHhhhCCH----HHHHHHHHHHHHH
Confidence            345554 33432  457888883     58888888887653    5999999999999

>PRK01345 heat shock protein HtpX; Provisional

Probab=93.02  E-value=0.14  Score=46.30  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             CceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           82 GEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        82 ~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      .--||++|.     .|-++...++..++    +|+.|||.||+.|
T Consensus        94 ~~NAFa~G~~~~~~~V~vt~gLL~~L~~----dEL~aVlAHElgH  134 (317)
T PRK01345         94 QPNAFATGRNPENAAVAATTGLLQRLSP----EEVAGVMAHELAH  134 (317)
T ss_pred             CcceEEecCCCCCeEEEechHHHhhCCH----HHHHHHHHHHHHH
Confidence            346888873     69999999987643    5999999999999

>PRK03982 heat shock protein HtpX; Provisional

Probab=92.63  E-value=0.19  Score=44.49  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=29.4

Q ss_pred             CceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           82 GEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        82 ~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      .--||++|.     .|.++...++..++    +|+.+||.||+.|
T Consensus        95 ~~NAfa~G~~~~~~~V~vt~gLl~~l~~----~El~AVlAHElgH  135 (288)
T PRK03982         95 TPNAFATGRDPKHAVVAVTEGILNLLNE----DELEGVIAHELTH  135 (288)
T ss_pred             CcceEEeccCCCCeEEEeehHHHhhCCH----HHHHHHHHHHHHH
Confidence            347888862     68899999987653    5999999999999

>PRK04897 heat shock protein HtpX; Provisional

Probab=92.60  E-value=0.14  Score=45.75  Aligned_cols=47  Identities=28%  Similarity=0.492  Sum_probs=35.0

Q ss_pred             CCCeEEEEEccCCCCceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           68 NIPQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        68 ~v~~Vtl~l~d~~~~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      |..+|- ++++-  ..-||++|.     .|-++...++..+.    +|+.+||.||+.|
T Consensus        96 p~p~v~-v~~~~--~~NAfa~G~~~~~~~v~vt~gLl~~l~~----~El~aVlAHElgH  147 (298)
T PRK04897         96 PMPRVF-IIDDP--SPNAFATGSSPKNAAVAVTTGLLAIMNR----EELEGVIGHEISH  147 (298)
T ss_pred             CCCcEE-EecCC--CCceEEeccCCCCcEEEeehHHHhhCCH----HHHHHHHHHHHHH
Confidence            345554 34543  567888873     68899888887653    5999999999999

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=91.94  E-value=0.32  Score=46.68  Aligned_cols=48  Identities=21%  Similarity=0.381  Sum_probs=37.7

Q ss_pred             CCeEEEEEccCCCCce-eEec-CCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           69 IPQVDLFIDDMKPGEI-AFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        69 v~~Vtl~l~d~~~~GV-A~t~-g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      -..++|+|-+-  +.+ |+++ |+.|.+++..|-...+   ..|+.|||.||+-|
T Consensus        91 ~~~f~f~lV~d--~~iNAFA~~Gg~v~vntGLll~ae~---esElagViAHEigH  140 (484)
T COG4783          91 KTPFTFFLVND--DSINAFATPGGYVVVNTGLLLTAEN---ESELAGVIAHEIGH  140 (484)
T ss_pred             CCCeEEEEecC--CccchhhcCCceEEEehHHHHhcCC---HHHHHHHHHHHHHH
Confidence            34588887764  564 6666 9999999999877543   36899999999999

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=91.81  E-value=0.25  Score=40.62  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=26.6

Q ss_pred             eeEecCC-e---EEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           84 IAFTSNN-G---IHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        84 VA~t~g~-~---I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      =|++.|. .   |.++...+...+    .+|+.+||.||+.|
T Consensus        62 NA~~~g~~~~~~I~v~~~ll~~~~----~~el~aVlaHElgH   99 (226)
T PF01435_consen   62 NAFATGGGPRKRIVVTSGLLESLS----EDELAAVLAHELGH   99 (226)
T ss_dssp             EEEEETTTC--EEEEEHHHHHHSS----HHHHHHHHHHHHHH
T ss_pred             cEEEEccCCCcEEEEeChhhhccc----HHHHHHHHHHHHHH
Confidence            4666554 4   999999995544    35999999999999

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK02391 heat shock protein HtpX; Provisional

Probab=90.79  E-value=0.28  Score=43.92  Aligned_cols=45  Identities=22%  Similarity=0.397  Sum_probs=33.4

Q ss_pred             CeEEEEEccCCCCceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           70 PQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        70 ~~Vtl~l~d~~~~GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      .+|- ++++-  ..-||++|.     .|-++...++.-++    +|+.+||.||+.|
T Consensus        94 p~v~-v~~~~--~~NAfa~G~~~~~~~V~vt~gLl~~L~~----~El~aVlaHElgH  143 (296)
T PRK02391         94 PRVA-VADSD--VPNAFATGRSPKNAVVCVTTGLMRRLDP----DELEAVLAHELSH  143 (296)
T ss_pred             CcEE-EEeCC--CCceEEecCCCCCcEEEecHHHHhhCCH----HHHHHHHHHHHHH
Confidence            3443 44542  567888873     58888888887653    5999999999999

>PRK02870 heat shock protein HtpX; Provisional

Probab=90.39  E-value=0.34  Score=44.40  Aligned_cols=46  Identities=28%  Similarity=0.481  Sum_probs=34.1

Q ss_pred             CCeEEEEEccCCCCceeEecC-----CeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           69 IPQVDLFIDDMKPGEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        69 v~~Vtl~l~d~~~~GVA~t~g-----~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      ..+|-+ +++-  .--|+++|     ..|-++...++..+    ++|+.|||.||+.|
T Consensus       133 ~p~V~v-i~~~--~~NAFA~G~~~~~~~Ivvt~GLL~~L~----~dEL~aVlAHELgH  183 (336)
T PRK02870        133 MPKVYI-IDAP--YMNAFASGYSEKSAMVAITTGLLEKLD----RDELQAVMAHELSH  183 (336)
T ss_pred             CCeEEE-EcCC--CCceEEecCCCCCcEEEEehHHhhhCC----HHHHHHHHHHHHHH
Confidence            345543 3432  45688876     38999999998765    36999999999999

>PRK01265 heat shock protein HtpX; Provisional

Probab=90.03  E-value=0.37  Score=44.02  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CceeEecC-----CeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           82 GEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        82 ~GVA~t~g-----~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      ..-|+++|     ..|-++...++..+.    +|+.|||.||+.|
T Consensus       110 ~~NAfa~G~~~~~~~Ivvt~gLl~~l~~----~El~aVlAHElgH  150 (324)
T PRK01265        110 FPNAFAYGSPIAGKRIAITLPLLKILNR----DEIKAVAGHELGH  150 (324)
T ss_pred             CCCeEEeccCCCCCEEEEehHHHhhCCH----HHHHHHHHHHHHH
Confidence            35677765     389999998888754    5999999999999

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.84  E-value=2.7  Score=36.79  Aligned_cols=94  Identities=14%  Similarity=0.274  Sum_probs=53.8

Q ss_pred             CCeEEEEEccCCCCceeEecC---CeEEEcccccccCCchhhhHHHHHHHHHHHhh---cCC---------CCCCCcCCC
Q 041464           69 IPQVDLFIDDMKPGEIAFTSN---NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH---ANY---------VPEGWAKPG  133 (198)
Q Consensus        69 v~~Vtl~l~d~~~~GVA~t~g---~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH---Ag~---------ap~hw~~p~  133 (198)
                      -++|.+.+.+.  --..++.|   ..|-++.+..++.+++    |+.-||.||++|   -|.         ..-||--|.
T Consensus       157 ~~~~~i~~s~~--i~sP~~~G~~~p~I~lP~~~~~~~~~~----el~~il~HEl~Hikr~D~~~~~l~~l~~~l~WfnP~  230 (299)
T PF05569_consen  157 KRPIRIRVSSG--ISSPFVFGFLRPVIVLPESLLEDLSEE----ELRAILLHELAHIKRRDLLWKLLAELLCALHWFNPL  230 (299)
T ss_pred             CCceEEEEcCC--CCCCeeecCcceEEEecCccccccCHH----HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhhHH
Confidence            35566666553  22456667   3899998877776644    788999999999   111         123554331


Q ss_pred             CCCCCCCCcchhHhHHHHHHh-hcCCCHHHHHHHHHhccCCHHH
Q 041464          134 EGTMWNQGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDNF  176 (198)
Q Consensus       134 ~g~~wd~GY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ysd~~  176 (198)
                      -       | -...++-..+| ..|...++.+|..=+..|.+..
T Consensus       231 ~-------~-~~~~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~L  266 (299)
T PF05569_consen  231 V-------W-LLRRRIRRDRELACDEAVLRNLGKEERKAYAETL  266 (299)
T ss_pred             H-------H-HHHHHHHHHHHHhhhHHHHHhcCchhHHHHHHHH
Confidence            0       1 13334444555 5566666666555444454433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.60  E-value=8  Score=36.15  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=33.0

Q ss_pred             CCcchhHhHHHHHHh-hcCCCHHHHHHHHHhccCCHHHHHH----H-hCCCHHHHHHHHHHHh
Q 041464          140 QGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDNFFME----L-LGKSIDQLWNDYKAKY  196 (198)
Q Consensus       140 ~GY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ysd~~~~~----l-~G~~v~~LW~eY~~~~  196 (198)
                      .+| ..+.-|..||. +++.+|++++=..-...=+++....    + .|.+.+++-.++...+
T Consensus       224 ~sY-s~s~~Fg~~L~rQ~G~~~~~~~l~~~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~  285 (366)
T PF10460_consen  224 ASY-SSSYSFGAYLYRQYGGDFYKKLLTNSSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL  285 (366)
T ss_pred             ccc-hhHHHHHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            479 89999999998 6788888764221111111222222    2 2456777777666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	94.3
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	92.48

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.30  E-value=0.042  Score=40.73  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             ceeEecCC-----eEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           83 EIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        83 GVA~t~g~-----~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      --|++.|.     .|.++...+...+.    +|+.+||.||+.|
T Consensus        54 ~NAf~~g~~~~~~~i~v~~gLl~~l~~----~El~aVlaHElgH   93 (107)
T 3cqb_A           54 INAFATGAKRDDSLVAVSTGLLHNMTR----DEAEAVLAHEVSH   93 (107)
T ss_dssp             EEEEEECCC--CCEEEEEHHHHHHSCH----HHHHHHHHHHHHH
T ss_pred             cCEEEEecCCCCCEEEEcHHHHhhCCH----HHHHHHHHHHHHH
Confidence            36888873     59999999988753    5999999999999

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=92.48  E-value=0.18  Score=42.41  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=28.7

Q ss_pred             eeEec-CCeEEEcccccccCCchhhhHHHHHHHHHHHhh
Q 041464           84 IAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTH  121 (198)
Q Consensus        84 VA~t~-g~~I~~S~~~i~~~~~d~~~~Ei~GVl~HE~vH  121 (198)
                      -||+. |+.|.++...|+...+   .+|+.+||.||+.|
T Consensus        75 NAfa~~gg~I~v~~gLl~~l~~---~~ELaaVLaHElgH  110 (253)
T 3c37_A           75 NAFAIPGGRVYVHTGLLKAADN---ETELAGVLAHEINH  110 (253)
T ss_dssp             CEEEETTTEEEEEHHHHHHCSS---HHHHHHHHHHHHHH
T ss_pred             CeeEcCCCeEEeeHHHHhhCCC---HHHHHHHHHHHHHH
Confidence            46666 4699999999988632   36999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00