Citrus Sinensis ID: 041470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVDENV
cHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccEEEEEEccEEEEEcEEEccccHHHHHccccccccEEEEEccccEEEEcEEEEcccccEEEEEcEEEEEEEEEEEEccccccccccEEccccccEEEEEEEEEccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEcccccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccc
cHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEccccccccEEEEEEEEEEccccHHHccccccccccEEEEEEEEcEEEEEEcEEEcccccHHHccccccccEEEEEEccEEEEEEEEEEEccccccEEEEccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEcccccEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccccccccHcccccccccccccccHHccccccc
MANYVAVLFLLLSTQCFLsahcrhlpsnqgaigdafdvlnygaagdghtddtQAFKDAWKAtcksssssptmhvphdksfklqpltfsgeicksnsitfqidghlvaprdphawntcdgskcrqWIQFKKFGGlfirgvgsingqgsnwwklsckhdkiglvvansnnvhiddltfedspqmHIAFERstnieatnltimapgnspntdgihiqhssnvSIAHSiistgddcvsigdgsshlnitnifcgpghgisigslgmkgrnekVEFVHVnnvsftetqngvriktwqgsynpividqyycphkhcknktlavKISDVTynhilgtsngetAVAFScststpckniimkdihlghvkpekktssycsnvrgtadpgvfpkvsclqvdenv
MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSssssptmhvphdKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNnvsftetqngvriktwqgsyNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVrgtadpgvfpkvsclqvdenv
MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVDENV
**NYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAW*********************KLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIM*********GIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLG************************************
**NYVAVLFLLLSTQCFLSA*************DAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQ*****
MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDA*****************HDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVDENV
MANYVAVLFLLLSTQCFLSAHC**********GDAF**LNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQV****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVDENV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
Q94AJ5444 Probable polygalacturonas no no 0.880 0.781 0.407 5e-76
Q9LW07456 Probable polygalacturonas no no 0.893 0.771 0.417 2e-68
Q02096462 Polygalacturonase OS=Pers N/A no 0.827 0.705 0.417 1e-67
P48978460 Polygalacturonase OS=Malu N/A no 0.857 0.734 0.390 3e-67
P43212514 Polygalacturonase OS=Cryp N/A no 0.794 0.608 0.413 3e-67
Q949Z1475 Polygalacturonase At1g481 no no 0.888 0.736 0.365 1e-66
P35336467 Polygalacturonase OS=Acti N/A no 0.832 0.702 0.403 3e-66
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.857 0.657 0.381 9e-66
O23147431 Polygalacturonase ADPG1 O no no 0.850 0.777 0.385 3e-65
P48979393 Polygalacturonase OS=Prun N/A no 0.865 0.867 0.412 7e-65
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function desciption
 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/380 (40%), Positives = 217/380 (57%), Gaps = 33/380 (8%)

Query: 38  VLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSI 97
           V N+GA G+G TDDT+AF DAWK  C SS     + VP + +  L+P+  SG  CK+  +
Sbjct: 55  VGNFGAKGNGVTDDTKAFADAWKTAC-SSKVKTRILVPENYTCLLRPIDLSGP-CKAR-L 111

Query: 98  TFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHD 157
           T QI G ++AP DP  W   +G   R+W+ F     L + G G++NG G  WW+ SCKH+
Sbjct: 112 TLQISGTIIAPNDPDVW---EGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHN 168

Query: 158 --------KIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTD 209
                      L      N+ +++L   DS QMHIA      +  + L ++AP  SPNTD
Sbjct: 169 HSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTD 228

Query: 210 GIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKV 269
           GIHI  S  + I ++ +STGDDC+SI   S+ ++I+NI CGPGHGISIGSLG     E+V
Sbjct: 229 GIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEV 288

Query: 270 EFVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYC-PHKHCK 311
             + V+    ++T NGVRIKTWQG                   NPI+IDQYYC   K C 
Sbjct: 289 RDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCA 348

Query: 312 NKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCS 371
           N+T A+ I ++++ H+ GTS  + A+  SCS S+PC+NI+++DI L     +  T S+C 
Sbjct: 349 NQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCW 408

Query: 372 NVRGTADPGVFPKVSCLQVD 391
              G++   V+P   CL  D
Sbjct: 409 EAYGSSSGQVYPP-PCLSDD 427

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
224133792352 predicted protein [Populus trichocarpa] 0.814 0.911 0.526 2e-98
359491344 771 PREDICTED: polygalacturonase-like [Vitis 0.898 0.459 0.452 5e-90
10176984411 polygalacturonase-like protein [Arabidop 0.956 0.917 0.441 3e-88
297734026393 unnamed protein product [Vitis vinifera] 0.939 0.941 0.440 6e-88
297801608410 predicted protein [Arabidopsis lyrata su 0.949 0.912 0.432 3e-85
297734027387 unnamed protein product [Vitis vinifera] 0.875 0.891 0.436 3e-83
224284550440 unknown [Picea sitchensis] 0.873 0.781 0.447 5e-80
116786106440 unknown [Picea sitchensis] gi|116789399| 0.873 0.781 0.445 2e-79
15242508373 glycoside hydrolase family 28 protein / 0.903 0.954 0.427 3e-78
116792819429 unknown [Picea sitchensis] gi|148907395| 0.873 0.801 0.429 6e-78
>gi|224133792|ref|XP_002321662.1| predicted protein [Populus trichocarpa] gi|222868658|gb|EEF05789.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/359 (52%), Positives = 242/359 (67%), Gaps = 38/359 (10%)

Query: 36  FDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSS-PTMHVPHDKSFKLQPLTFSGEICKS 94
           ++V++YGA GDG TDDTQAFKDAWK  CKSSS S P + VP  KSF LQPLTF+GE CK 
Sbjct: 26  YNVIDYGAVGDGDTDDTQAFKDAWKDVCKSSSCSVPIIQVPSGKSFLLQPLTFNGE-CKP 84

Query: 95  NSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSC 154
           + I FQIDG + AP DP  W   +   C+QWI F +   L IRG G+++GQGS WW+L  
Sbjct: 85  DQIIFQIDGTMKAPSDPSDWKCQEHRYCKQWITFDEVDNLTIRGSGTMDGQGSTWWEL-- 142

Query: 155 KHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQ 214
                   +++S NVH++ LTF+DSPQMH+AFERS  + A+NLTI APG+SPNTDGIH+Q
Sbjct: 143 --------ISHSQNVHLEGLTFKDSPQMHMAFERSEWVYASNLTIQAPGDSPNTDGIHLQ 194

Query: 215 HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHV 274
           H+ N+ I +S I TGDDC+SIGDGSS +NIT I CGPGHGISIGSLG+ G +E VE VHV
Sbjct: 195 HAKNIFIDYSRIMTGDDCISIGDGSSQINITRIACGPGHGISIGSLGIDGESETVEDVHV 254

Query: 275 NNVSFTETQNGVRIKTWQGSYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGE 334
           ++V FTET NG RIKTWQ S                     AV+IS + + +I GTS+ +
Sbjct: 255 SDVVFTETTNGARIKTWQSS---------------------AVEISKIRFENIYGTSHRK 293

Query: 335 TAVAFSCSTSTPCKNIIMKDIHLGHV-----KPEKKTSSYCSNVRGTADPGVFPKVSCL 388
            AV  +CS S PC +I++ ++HL            + S+YC+NV+G A   VFP ++CL
Sbjct: 294 PAVHIACSKSVPCTDIVLSNVHLEAADDGDGDDGDEPSTYCANVQGHAMGRVFPPLTCL 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491344|ref|XP_002267182.2| PREDICTED: polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|10176984|dbj|BAB10216.1| polygalacturonase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297734026|emb|CBI15273.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297801608|ref|XP_002868688.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314524|gb|EFH44947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297734027|emb|CBI15274.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224284550|gb|ACN40008.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|116786106|gb|ABK23977.1| unknown [Picea sitchensis] gi|116789399|gb|ABK25238.1| unknown [Picea sitchensis] gi|224284249|gb|ACN39860.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|15242508|ref|NP_198807.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|332007107|gb|AED94490.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116792819|gb|ABK26513.1| unknown [Picea sitchensis] gi|148907395|gb|ABR16831.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.662 0.601 0.419 2.3e-72
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.664 0.551 0.393 4.2e-67
TAIR|locus:2178052373 AT5G39910 [Arabidopsis thalian 0.928 0.981 0.405 4.5e-66
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.639 0.574 0.414 8.7e-65
TAIR|locus:2128023394 AT4G35670 [Arabidopsis thalian 0.814 0.814 0.411 2.3e-64
TAIR|locus:2066251402 AT2G26620 [Arabidopsis thalian 0.654 0.641 0.413 3.7e-62
TAIR|locus:2146370458 AT5G27530 [Arabidopsis thalian 0.855 0.735 0.392 2.1e-61
TAIR|locus:2047218402 AT2G15460 [Arabidopsis thalian 0.654 0.641 0.405 1.8e-60
TAIR|locus:2167185421 AT5G17200 [Arabidopsis thalian 0.906 0.847 0.398 1.9e-60
TAIR|locus:2047153404 AT2G15470 [Arabidopsis thalian 0.654 0.638 0.402 6.1e-60
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 118/281 (41%), Positives = 166/281 (59%)

Query:    28 NQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSS-SSPTMHVPHDKSFKLQPLT 86
             N       FDV ++GA GD  TDDT AFK AW A C S+   S  + VP+   F ++P T
Sbjct:    40 NDNIAPTVFDVTSFGAIGDCSTDDTSAFKMAWDAACMSTGPKSALLLVPYTFCFLVKPTT 99

Query:    87 FSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQG 146
             F+G  C++N +  QIDG +V+P  P +W +   +  RQW+ F +  GL I+G G ING+G
Sbjct:   100 FNGP-CRTN-LVLQIDGFIVSPDGPRSWPS---NYQRQWMMFYRVNGLSIQGSGVINGRG 154

Query:   147 SNWWKLSCKHDK--------------IGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNI 192
               WW L CK  K              + + +  S+ V I  + F +S Q H+ F+  +++
Sbjct:   155 QKWWNLPCKPHKGLNGTTQTGPCDSPVAIRLFQSSKVRIQGINFMNSAQFHVRFDNCSDV 214

Query:   193 EATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG 252
                ++ I AP +SPNTDGIHI+++ NV I +S+IS GDDC+SIG G  +++I N+ CGP 
Sbjct:   215 VVDSVIIKAPASSPNTDGIHIENTHNVQIRNSMISNGDDCISIGAGCFNVDIKNVTCGPS 274

Query:   253 HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQG 293
             HGISIGSLG+      V  + V N +   + NGVRIKTWQG
Sbjct:   275 HGISIGSLGVHNSQAYVSNITVTNSTIWNSDNGVRIKTWQG 315
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178052 AT5G39910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066251 AT2G26620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047218 AT2G15460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167185 AT5G17200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047153 AT2G15470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-103
PLN03010409 PLN03010, PLN03010, polygalacturonase 6e-93
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 9e-90
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 8e-83
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 6e-82
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-78
PLN02155394 PLN02155, PLN02155, polygalacturonase 7e-72
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-12
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 0.003
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  312 bits (800), Expect = e-103
 Identities = 152/383 (39%), Positives = 209/383 (54%), Gaps = 34/383 (8%)

Query: 36  FDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSN 95
             V ++GA GDG TDDTQAFK+AWK  C SS     + +P   +F ++P+   G  CK+ 
Sbjct: 53  LHVGDFGAKGDGVTDDTQAFKEAWKMAC-SSKVKTRIVIPAGYTFLVRPIDLGGP-CKAK 110

Query: 96  SITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCK 155
            +T QI G ++AP+DP  W    G   R+W+ F     L + G G++NG G  WW  SCK
Sbjct: 111 -LTLQISGTIIAPKDPDVWK---GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCK 166

Query: 156 HDK--------IGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPN 207
            +           +      ++ +++L   DS QMHIAF     +  + L ++AP  SPN
Sbjct: 167 INHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPN 226

Query: 208 TDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNE 267
           TDGIHI  S  V I  SI+ TGDDC+SI   SS + I NI CGPGHGISIGSLG      
Sbjct: 227 TDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS 286

Query: 268 KVEFVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYC-PHKH 309
           +V  + V+    + T NGVRIKTWQG                   NPI+IDQYYC   K 
Sbjct: 287 EVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKP 346

Query: 310 CKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSY 369
           C N+T AVK+ ++++ HI GTS  E A+ F+CS S+PC+ + ++D+ L     +  T S+
Sbjct: 347 CANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESF 405

Query: 370 CSNVRGTADPGVFPKVSCLQVDE 392
           C    G++   V+P   C     
Sbjct: 406 CWEAYGSSSGQVYPP-PCFSDST 427

Length = 443
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PLN02793443 Probable polygalacturonase 99.79
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.77
PLN03003456 Probable polygalacturonase At3g15720 99.77
PLN02218431 polygalacturonase ADPG 99.77
PLN02155394 polygalacturonase 99.76
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.75
PLN03010409 polygalacturonase 99.74
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.61
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.35
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.72
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.61
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.52
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.42
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.42
smart00656190 Amb_all Amb_all domain. 98.41
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.41
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.39
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.36
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.36
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.33
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.23
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.2
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.01
PLN02176340 putative pectinesterase 98.0
PLN02480343 Probable pectinesterase 97.91
PLN02682369 pectinesterase family protein 97.79
smart00656190 Amb_all Amb_all domain. 97.76
PLN02665366 pectinesterase family protein 97.76
PLN02773317 pectinesterase 97.72
PRK10531422 acyl-CoA thioesterase; Provisional 97.67
PLN02497331 probable pectinesterase 97.66
PLN02634359 probable pectinesterase 97.57
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.49
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.47
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.46
PLN02197588 pectinesterase 97.46
PLN02304379 probable pectinesterase 97.42
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.41
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.4
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.39
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.36
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.35
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.34
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.32
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.31
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.28
PLN02432293 putative pectinesterase 97.27
PLN02301548 pectinesterase/pectinesterase inhibitor 97.26
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.25
PLN02916502 pectinesterase family protein 97.25
PLN02671359 pectinesterase 97.24
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.24
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.23
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.22
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.22
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.2
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.19
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.13
PLN02314586 pectinesterase 97.12
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.08
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.0
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.7
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.11
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.81
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.13
PLN02773317 pectinesterase 92.0
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 90.86
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 89.18
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 87.68
PLN02480343 Probable pectinesterase 86.24
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 84.63
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.15
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 82.81
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 82.52
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 81.98
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 81.7
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 80.02
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.9e-77  Score=595.71  Aligned_cols=351  Identities=42%  Similarity=0.821  Sum_probs=320.9

Q ss_pred             CceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCC
Q 041470           33 GDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPH  112 (394)
Q Consensus        33 ~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~  112 (394)
                      +++|||+||||+|||++|||+|||+||++||+.. ||++|+||+|++|++++|.|.++ ||| +++|+++|+|+++.++.
T Consensus        50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gp-cks-~vtL~l~g~l~~~~d~~  126 (443)
T PLN02793         50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGP-CKA-KLTLQISGTIIAPKDPD  126 (443)
T ss_pred             ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCc-cCC-CeEEEEEEEEEccCChH
Confidence            4789999999999999999999999999889876 88999999996699999999887 889 99999999999999999


Q ss_pred             CCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCC--------CCCceeEEEecccceEEeeeeEeCCCCcee
Q 041470          113 AWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSC--------KHDKIGLVVANSNNVHIDDLTFEDSPQMHI  184 (394)
Q Consensus       113 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~--------~~~p~~i~~~~~~nv~I~~vti~ns~~~~i  184 (394)
                      +|+   +...++||++.+.+|++|+|.|+|||+|+.||...+        ..||+++.|.+|+|++|++++++|+|+|++
T Consensus       127 ~w~---~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i  203 (443)
T PLN02793        127 VWK---GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHI  203 (443)
T ss_pred             Hcc---CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEE
Confidence            997   344568999999999999999999999999996422        237999999999999999999999999999


Q ss_pred             EEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470          185 AFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG  264 (394)
Q Consensus       185 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~  264 (394)
                      ++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||+|.++|||+|||+|++.
T Consensus       204 ~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~  283 (443)
T PLN02793        204 AFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSN  283 (443)
T ss_pred             EEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcC
Confidence            99999999999999999988899999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCEEEEEEEeEEEeCCceeEEEEEecCC-----------------cccEEEEeEecCCC-CCCCCCcceeEEeEEEEE
Q 041470          265 RNEKVEFVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYCPHK-HCKNKTLAVKISDVTYNH  326 (394)
Q Consensus       265 ~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~-----------------~~~i~i~~~y~~~~-~~~~~~~~~~i~nI~~~n  326 (394)
                      +.+.|+||+|+||+|.++.+|+|||+|+|+                 .+||.|++.|++.. .|....+.+.|+||+|+|
T Consensus       284 ~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~n  363 (443)
T PLN02793        284 SWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVH  363 (443)
T ss_pred             CCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEE
Confidence            678899999999999999999999999764                 68999999997643 355556789999999999


Q ss_pred             EEEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcCCcC
Q 041470          327 ILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVD  391 (394)
Q Consensus       327 I~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~  391 (394)
                      |+++.....++.|.|+++.||+||+|+||+++... |+...+.|.|++|...+ .++|++|++..
T Consensus       364 I~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~-~~~p~~C~~~~  426 (443)
T PLN02793        364 IKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSG-QVYPPPCFSDS  426 (443)
T ss_pred             EEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECC-eEcCCccccCC
Confidence            99998655689999999999999999999999886 56667999999999988 78888999653

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 7e-16
1nhc_A336 Structural Insights Into The Processivity Of Endopo 2e-12
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 4e-10
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-09
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-09
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-09
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-08
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 7e-06
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 117/278 (42%), Gaps = 49/278 (17%)
Query: 118 DGSKCRQWIQFKKFGGLFIRGVGSINGQGS--------NWWKLSC-------KHDKIGLV 162
           +G  C  +I         I G G+I+GQG         +WW+L+        K +   L+
Sbjct: 95  NGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLI 154
Query: 163 VAN-SNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSI 221
             N S N  + +++  +SP  H+ F       A   TI  P  + NTDGI    S N++I
Sbjct: 155 QINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITI 214
Query: 222 AHSIISTGDDCVSIGDGSSHLNITNIFC-----GPGHGISIGSLGMKGRNEKVEFVHVNN 276
           A+S I+TGDD V+I          NI       G GHG+SIGS  M   N     V V++
Sbjct: 215 AYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVYN-----VTVDD 269
Query: 277 VSFTETQNGVRIKT-----------------WQGSYNPIVIDQYYCPHKHCKNKTLAVKI 319
           +    T NG+RIK+                  +    PIVID  Y      K  +     
Sbjct: 270 LKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY----EKKEGSNVPDW 325
Query: 320 SDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHL 357
           SD+T+  +  TS  +  V  +   +     + MK++ L
Sbjct: 326 SDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKL 361
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-109
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-100
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 4e-99
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 8e-84
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-83
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-82
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-81
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 8e-81
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-72
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-24
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-22
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-20
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-20
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-12
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-11
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-08
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 4e-05
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-04
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 2e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  327 bits (840), Expect = e-109
 Identities = 71/373 (19%), Positives = 134/373 (35%), Gaps = 43/373 (11%)

Query: 36  FDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSN 95
            ++L+YGA  D  TD   A   AW A CKS      +++P         +T +G      
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWAA-CKSGG---LVYIPSGNYALNTWVTLTGG-SA-- 73

Query: 96  SITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCK 155
               Q+DG +                         F        G++ G G  +      
Sbjct: 74  -TAIQLDGIIYRTGTASGNM-------IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY 125

Query: 156 HDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH 215
             +I L + +  +  + D+   D+P  H   +  ++ E  N+ I    N    DGI +  
Sbjct: 126 GARI-LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVW- 182

Query: 216 SSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVN 275
            SN+ +    ++  D+CV++   ++++ + +I+C    G ++GSLG    +  V  +   
Sbjct: 183 GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYR 239

Query: 276 NVSFTETQNGVRIKTWQGS----------------YNPIVIDQYYCPHKHCKNKTLAVKI 319
           NV    +     IK+  GS                   + ID Y+            V++
Sbjct: 240 NVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSS--MTAVAGDGVQL 297

Query: 320 SDVTYNHILGTSNG---ETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGT 376
           +++T  +  GT         +   CS + PC ++ ++DI +   +        C +  G+
Sbjct: 298 NNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI-WTESGSSELYLCRSAYGS 356

Query: 377 ADPGVFPKVSCLQ 389
                        
Sbjct: 357 GYCLKDSSSHTSY 369
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.89
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.88
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.83
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.78
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.76
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.76
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.74
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.71
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.7
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.7
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.69
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.62
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.56
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.41
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.39
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.17
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.11
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.1
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.06
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.01
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.77
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.55
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.52
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.48
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.48
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.44
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.38
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.35
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.32
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.31
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.29
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.23
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.18
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.17
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.13
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.08
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.08
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.08
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.97
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.92
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.89
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.81
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.63
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.52
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.51
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.45
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.3
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.09
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.03
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.76
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.43
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.73
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.77
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 92.8
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 92.37
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 91.51
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 91.36
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 91.12
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 89.44
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 87.48
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 82.49
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.1e-63  Score=498.49  Aligned_cols=312  Identities=23%  Similarity=0.347  Sum_probs=275.2

Q ss_pred             CCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccC
Q 041470           30 GAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPR  109 (394)
Q Consensus        30 ~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~  109 (394)
                      ..++..+||+||||+|||++|||+|||+||+ +|++. |+++|+||+| +|++++|.|+     | +++|+++|+|+++.
T Consensus        22 ~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~-ggg~v~vP~G-~yl~~~l~l~-----s-~v~l~l~gtL~~s~   92 (448)
T 3jur_A           22 QIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQ-GGGRLIVPEG-VFLTGPIHLK-----S-NIELHVKGTIKFIP   92 (448)
T ss_dssp             CCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHH-TCEEEEECSS-EEEESCEECC-----T-TEEEEESSEEEECC
T ss_pred             CCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhc-CCeEEEECCC-cEEEeeeEeC-----C-CcEEEEEEEEEecC
Confidence            4466899999999999999999999999998 56544 7899999999 9999999985     4 89999999999999


Q ss_pred             CCCCC-cCC----CC---CCccccEEEeeeeceEEEeceEEeCCC--ccccccCC-------------------------
Q 041470          110 DPHAW-NTC----DG---SKCRQWIQFKKFGGLFIRGVGSINGQG--SNWWKLSC-------------------------  154 (394)
Q Consensus       110 ~~~~~-~~~----~~---~~~~~~i~~~~~~nv~I~G~G~idg~g--~~~~~~~~-------------------------  154 (394)
                      ++.+| +..    ++   ....+||++.+++||+|+|.|+|||+|  +.||....                         
T Consensus        93 d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  172 (448)
T 3jur_A           93 DPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAE  172 (448)
T ss_dssp             CGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHH
T ss_pred             CHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhc
Confidence            99998 321    11   124579999999999999999999999  88996321                         


Q ss_pred             --------------CCCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEE
Q 041470          155 --------------KHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVS  220 (394)
Q Consensus       155 --------------~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~  220 (394)
                                    ..||+++.|.+|+|++|+|++++|+|+|++++..|+|++|++++|.++  ++|+||||+.+|+||+
T Consensus       173 ~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~  250 (448)
T 3jur_A          173 RGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYML  250 (448)
T ss_dssp             HTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEE
T ss_pred             ccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEE
Confidence                          257999999999999999999999999999999999999999999996  6899999999999999


Q ss_pred             EEeEEEecCCceEEeCCC-----------CeeEEEEeeEe--cCCc-eeEEeecCCcCCCCCEEEEEEEeEEEeCCceeE
Q 041470          221 IAHSIISTGDDCVSIGDG-----------SSHLNITNIFC--GPGH-GISIGSLGMKGRNEKVEFVHVNNVSFTETQNGV  286 (394)
Q Consensus       221 I~n~~i~~gDD~iai~s~-----------~~nV~i~n~~~--~~~~-gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi  286 (394)
                      |+||+|.++||||++|++           ++||+|+||+|  ..+| ||+|||++    .+.++||+|+||+|.++.+|+
T Consensus       251 I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~Gi  326 (448)
T 3jur_A          251 IEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERAL  326 (448)
T ss_dssp             EESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEE
T ss_pred             EEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceE
Confidence            999999999999999998           89999999999  5566 89999984    578999999999999999999


Q ss_pred             EEEEecC--C---------------cccE-EEEeEecCCCCCCCCCcceeEEeEEEEEEEEEecCCceEEEEecCCCCee
Q 041470          287 RIKTWQG--S---------------YNPI-VIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCK  348 (394)
Q Consensus       287 ~ik~~~g--~---------------~~~i-~i~~~y~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~~~~~~~~~  348 (394)
                      |||+|++  +               .+|+ .|++.|+..    .....+.|+||+|+||+++.. ..++.|.|.++.||+
T Consensus       327 rIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~----~~~~~~~i~nI~~~NI~~t~~-~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          327 RLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE----EGEYLPVVRSVFVKNLKATGG-KYAVRIEGLENDYVK  401 (448)
T ss_dssp             EEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC----CCSCCCEEEEEEEESCEEEEC-SEEEEEECBTTBCEE
T ss_pred             EEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC----CCCCCceEEEEEEEeEEEEec-ceEEEEEeCCCCCEe
Confidence            9999954  3               5666 889988754    223467999999999999984 458999999999999


Q ss_pred             cEEEEeEEEEeec
Q 041470          349 NIIMKDIHLGHVK  361 (394)
Q Consensus       349 ni~~~nv~i~~~~  361 (394)
                      ||+|+||+++...
T Consensus       402 ~I~~~nv~i~~~~  414 (448)
T 3jur_A          402 DILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEESCS
T ss_pred             eEEEEEEEEEccc
Confidence            9999999999654
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 9e-71
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-62
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-57
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-51
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-48
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 8e-48
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-45
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-42
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 2e-05
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-05
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  226 bits (576), Expect = 9e-71
 Identities = 71/361 (19%), Positives = 135/361 (37%), Gaps = 43/361 (11%)

Query: 36  FDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSN 95
            ++L+YGA  D  TD   A   AW A CKS      +++P         +T +G     +
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWAA-CKSGG---LVYIPSGNYALNTWVTLTG----GS 72

Query: 96  SITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCK 155
           +   Q+DG +                         F        G++ G G  +      
Sbjct: 73  ATAIQLDGIIYRTGTASGNM-------IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY 125

Query: 156 HDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH 215
             +I L + +  +  + D+   D+P  H   +  ++ E  N+ I    N    DGI +  
Sbjct: 126 GARI-LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG 183

Query: 216 SSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVN 275
            SN+ +    ++  D+CV++   ++++ + +I+C    G ++GSLG    +  V  +   
Sbjct: 184 -SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYR 239

Query: 276 NVSFTETQNGVRIKTWQGS----------------YNPIVIDQYYCPHKHCKNKTLAVKI 319
           NV    +     IK+  GS                   + ID Y+            V++
Sbjct: 240 NVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGD--GVQL 297

Query: 320 SDVTYNHILGTSN---GETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGT 376
           +++T  +  GT         +   CS + PC ++ ++DI +            C +  G+
Sbjct: 298 NNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG-SSELYLCRSAYGS 356

Query: 377 A 377
            
Sbjct: 357 G 357
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.8
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.77
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.77
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.74
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.69
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.63
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.55
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.5
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.49
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.64
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.37
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.26
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.14
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 98.03
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.91
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.8
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.69
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.57
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.5
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.36
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.17
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.91
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.85
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.79
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.27
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.07
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.11
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 92.64
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 88.16
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 81.44
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.7e-61  Score=480.35  Aligned_cols=332  Identities=22%  Similarity=0.377  Sum_probs=285.0

Q ss_pred             cccCCCCCC-CCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEee-cceeccCccccceEE
Q 041470           21 HCRHLPSNQ-GAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQ-PLTFSGEICKSNSIT   98 (394)
Q Consensus        21 ~~~~~~~~~-~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~-~l~l~~~~~~s~~v~   98 (394)
                      +.+++.+.. ++..++|||+||||+|||++|||+|||+||+ ||+   +|++|+||+| +|++. +|.|+++    .++.
T Consensus         5 ~~gp~~~~~~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~---~gg~V~iP~G-ty~l~~~i~l~g~----~~~~   75 (422)
T d1rmga_           5 SVGPLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK---SGGLVYIPSG-NYALNTWVTLTGG----SATA   75 (422)
T ss_dssp             CCSCSSCHHHHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT---BTCEEEECSS-EEEECSCEEEESC----EEEE
T ss_pred             ccCCcccccccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC---CCCEEEECCC-cEEEeCcEEEcCC----CceE
Confidence            334444333 4467899999999999999999999999997 787   5789999999 89776 6999887    4899


Q ss_pred             EEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeC
Q 041470           99 FQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFED  178 (394)
Q Consensus        99 l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~n  178 (394)
                      |+++|+|.++.....|.       ..+....+.+.+.+.|.|+|||+|..||... ..+|++++|.+|+|++|++++++|
T Consensus        76 l~~~G~i~~~~~~~~~~-------~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-~~~p~~l~~~~~~n~~i~git~~n  147 (422)
T d1rmga_          76 IQLDGIIYRTGTASGNM-------IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-TYGARILRLTDVTHFSVHDIILVD  147 (422)
T ss_dssp             EEECSEEEECCCCSSEE-------EEEEEEEEEEEECSSSCCEEECCTHHHHTTT-CCCCEEEEEEEEEEEEEEEEEEEC
T ss_pred             EEEeEEEEeccCCccCE-------EEeccCccEEEEEeecceEEecCcceecCCC-CCCCcEEEEEeeeeeEEECcEecC
Confidence            99999999876544332       2344445556677788999999999999743 346999999999999999999999


Q ss_pred             CCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEe
Q 041470          179 SPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIG  258 (394)
Q Consensus       179 s~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iG  258 (394)
                      +|.|++.+..|++++|+|++|.++ +.+|+||||+.+ +||+|+||++.++||||+++++++||+|+|++|..+||++||
T Consensus       148 sp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiG  225 (422)
T d1rmga_         148 APAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMG  225 (422)
T ss_dssp             CSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEE
T ss_pred             CCceEEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEe
Confidence            999999999999999999999986 458999999986 589999999999999999999999999999999999999999


Q ss_pred             ecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC----------------cccEEEEeEecCCCCCCCCCcceeEEeE
Q 041470          259 SLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS----------------YNPIVIDQYYCPHKHCKNKTLAVKISDV  322 (394)
Q Consensus       259 s~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~----------------~~~i~i~~~y~~~~~~~~~~~~~~i~nI  322 (394)
                      |+++   ...|+||+|+||++.++.+|++||++.|.                .+||.|++.|+....+  ..+.++|+||
T Consensus       226 s~g~---~~~V~nV~v~n~~~~~s~~g~~ik~~~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~--~~~~v~isnI  300 (422)
T d1rmga_         226 SLGA---DTDVTDIVYRNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNI  300 (422)
T ss_dssp             EECT---TEEEEEEEEEEEEEESSSCSEEEEEBBCCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB--SSSCCEEEEE
T ss_pred             eccC---CCCEEEEEEEeEEEeCCCceEEEEEcCCCceecceEEEEEEEecccccEEEecccCCCCCC--CCCCeEEEEE
Confidence            9975   35799999999999999999999998664                6799999999765432  2356789999


Q ss_pred             EEEEEEEEec---CCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCC
Q 041470          323 TYNHILGTSN---GETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTA  377 (394)
Q Consensus       323 ~~~nI~~~~~---~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~  377 (394)
                      +|+||+++..   ...++.|.|+++.||+||+|+||+++... |+++.++|.|++|..
T Consensus       301 t~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~-g~~~~~~C~na~G~~  357 (422)
T d1rmga_         301 TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSG  357 (422)
T ss_dssp             EEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESS-SSCEEEEEESEEEES
T ss_pred             EEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCC-CCCcceEEECceeeE
Confidence            9999999864   34589999999999999999999999887 777889999999865
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure