Citrus Sinensis ID: 041508

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850----
MKTAASNSNAINHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYKEEEEERSDRWNSFLERQSESAQLPINGLSTEGNNNALRTEAKGEEVGDSLEKVIEVDDSSVKKPGSDSSSENATEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQTGRGKPSPPSDESKSLKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQGLASKLYNFKQDPKSMLIDPNKGVQLDDPQTNGNLSRSESGSTNADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKAQPSPRSPHPDSSARSNQEPTQEVPGRKISLLARPFGLGWRDRNKGKANSTDGPADVKPVNEAQSPSTRSVNDTPSTKAPNETQGPRTEPLNGAPTPSTTEQKGTDGVEVQE
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccEEHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccEEEEcccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHcccccccccHcccccccccccccccccccccccHHHHHcccccccccccEEEHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccHccccccccccccccHccccccccccccccccccHHHHHHHHHHHHHHccHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccEEEccccccccccccccccccccHHHHHHHHHHcccccccccHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHHHHcHHHHHHHHHccccEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccHHHccccccHHcccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc
mktaasnsnainhpllafehkrdvygfavrpqhVQRYREYANIYKEEEEERSDRWNSFLERqsesaqlpinglstegnnnalrteakgeevgDSLEKVIEvddssvkkpgsdsssenatEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVkkkgsipkgeqtgrgkpsppsdeskslkgaseedsddefydveksdptqdspshdsvsasVTGAVaidattlqslfpwKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAEsnfgnnmeqhssqsdndsksstkdsvclpekwkgqiekdlprtfpghpaldndgRNALRRLLTAYArhnpsvgyCQAMNFFAALLLLLMPEENAFWALMGILDdyfdgyyseeMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYgpalvttkdAGDAVTLLQTLagstfdssQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQGLASKLYnfkqdpksmlidpnkgvqlddpqtngnlsrsesgstnaDEVLISLtgdgeidsvpdLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQsgqikaqpsprsphpdssarsnqeptqevpgrkisllarpfglgwrdrnkgkanstdgpadvkpvneaqspstrsvndtpstkapnetqgprteplngaptpstteqkgtdgvevqe
mktaasnsnainhpllaFEHKRDVYGFAVRPQHVQRYREYANIYKEEEEERSDRWNSFLERQSesaqlpinglstegnnnalrteakgeevgdslekvievddssvkkpgsdsssenatekeeilsttekkthriiiwseirpslraIEDMMSVRVKkkgsipkgeqtgrgkpsppsdeskslkgaseedsddeFYDVEKsdptqdspshdSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHssqsdndsksstkdsvclpekWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLlarkdsqglASKLYNFKQDPKSMLIDPNKGVQLDDPQTngnlsrsesgstnADEVLISLTgdgeidsvpDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKAQPSPRSPHPDSSARsnqeptqevpgrkiSLLARPFGLGWRDRNKGkanstdgpadvkpvneaqspstrsvndtpstkapnetqgprteplngaptpstteqkgtdgvevqe
MKTAASNSNAINHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYKeeeeeRSDRWNSFLERQSESAQLPINGLSTEGNNNALRTEAKGEEVGDSLEKVIEvddssvkkpgsdsssENATEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQTGRGKPSPPSDESKSLKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHssqsdndsksstkdsVCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNffaalllllMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQGLASKLYNFKQDPKSMLIDPNKGVQLDDPQTNGNLSRSESGSTNADEVLISLTGDGEIDSVPDLQEQVVWLKVELCrlleekrsallraeeletalmeMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFaeqdaaaqryaaqvlqEKYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKAQPSPRSPHPDSSARSNQEPTQEVPGRKISLLARPFGLGWRDRNKGKANSTDGPADVKPVNEAQSPSTRSVNDTPSTKAPNETQGPRTEPLNGAPTPSTTEQKGTDGVEVQE
***********NHPLLAFEHKRDVYGFAVRPQHVQRYREYANIY***************************************************************************************THRIIIWSEIRPSLRAI********************************************************************VTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLL*********************************************************RNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAV*************************************************************VLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLR*****************************************************************************YAAQVLQEKYEEAIA**********************************************************LLARPFGLGW************************************************************************
************HPLLAFEHKRDVYGFAVRPQHVQRYRE*******************************************************************************************************************************************************************************ASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQN*************************************************************************************DLQEQVVWLKVELCR*******************************************************************************************QVLQEKYEEAIASLAEME*RVVMAESMLE***********************************************G***************************************************************************
********NAINHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYK**********NSFLERQSESAQLPINGLSTEGNNNALRTEAKGEEVGDSLEKVIEVD****************************KTHRIIIWSEIRPSLRAIEDMMSVRV***********************************************************SVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGN*********************CLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQGLASKLYNFKQDPKSMLIDPNKGVQLDDPQT************NADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQY******************************PGRKISLLARPFGLGWRDRNK*********ADVKP*****************************************************
**********INHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYKEEEEERSDRWNSFLERQSE*****************************************************************KKTHRIIIWSEIRPSLRAIEDMMSVRVK*****************************************************DSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHS****NDSKS****SVCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQ***SKL**************************GN****E*GSTNADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQSG**********************************LARPFGLGW************************************************************************
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MKTAASNSNAINHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYKEEEEERSDRWNSFLERQSESAQLPINGLSTEGNNNALRTEAKGEEVGDSLEKVIEVDDSSVKKPGSDSSSENATEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQTGRGKPSPPSDESKSLKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGLLARKDSQGLASKLYNFKQDPKSMLIDPNKGVQLDDPQTNGNLSRSESGSTNADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEATLQYQSGQIKAQPSPRSPHPDSSARSNQEPTQEVPGRKISLLARPFGLGWRDRNKGKANSTDGPADVKPVNEAQSPSTRSVNDTPSTKAPNETQGPRTEPLNGAPTPSTTEQKGTDGVEVQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query854 2.2.26 [Sep-21-2011]
Q9Z1A91134 TBC1 domain family member yes no 0.266 0.201 0.366 1e-40
O957591140 TBC1 domain family member yes no 0.266 0.2 0.362 7e-40
Q66K14 1250 TBC1 domain family member no no 0.258 0.176 0.382 2e-39
Q6ZT07 1266 TBC1 domain family member no no 0.258 0.174 0.374 3e-39
A3KGB41114 TBC1 domain family member no no 0.272 0.209 0.357 5e-39
Q5SVR0 1263 TBC1 domain family member no no 0.258 0.174 0.382 7e-39
Q3UYK3 1264 TBC1 domain family member no no 0.258 0.174 0.370 2e-38
Q0IIM81120 TBC1 domain family member no no 0.272 0.208 0.353 4e-38
B0R0W91108 TBC1 domain family member no no 0.278 0.214 0.356 2e-37
P53258 950 GTPase-activating protein yes no 0.300 0.270 0.337 4e-37
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2 Back     alignment and function desciption
 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 144/254 (56%), Gaps = 26/254 (10%)

Query: 236 EELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDS 295
           E++  LV  G+P +LRG LW  F             DL S    +GN +EQ         
Sbjct: 495 EKIRKLVAMGIPESLRGRLWLLFSDA--------VTDLASHPGYYGNLVEQ--------- 537

Query: 296 KSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDND-GRNALRRLLTAYARHNPSVGYCQA 354
              +    CL  +   +IE+DL R+ P HPA  N+ G  ALRR+LTAYA  NP +GYCQ+
Sbjct: 538 ---SLGRCCLVTE---EIERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQS 591

Query: 355 MNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVN 414
           MN   ++LLL   EE AFW L+ + +     Y++  +I +QVDQ VFEEL++E+ P+L  
Sbjct: 592 MNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFEELIKEQLPELAE 651

Query: 415 HLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPA 474
           H+  L   +A ++  WFL++F++++P ES + + D   ++G +  +F+  LA++E     
Sbjct: 652 HMSDLSA-LASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKA-IFQLGLAVLEANAEE 709

Query: 475 LVTTKDAGDAVTLL 488
           L ++KD G A+ +L
Sbjct: 710 LCSSKDDGQALMVL 723
May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)
>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3 Back     alignment and function description
>sp|Q66K14|TBC9B_HUMAN TBC1 domain family member 9B OS=Homo sapiens GN=TBC1D9B PE=1 SV=3 Back     alignment and function description
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function description
>sp|A3KGB4|TBC8B_MOUSE TBC1 domain family member 8B OS=Mus musculus GN=Tbc1d8b PE=2 SV=1 Back     alignment and function description
>sp|Q5SVR0|TBC9B_MOUSE TBC1 domain family member 9B OS=Mus musculus GN=Tbc1d9b PE=2 SV=1 Back     alignment and function description
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q0IIM8|TBC8B_HUMAN TBC1 domain family member 8B OS=Homo sapiens GN=TBC1D8B PE=1 SV=2 Back     alignment and function description
>sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio rerio GN=tbc1d8b PE=4 SV=1 Back     alignment and function description
>sp|P53258|GYP2_YEAST GTPase-activating protein GYP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
255568157845 run and tbc1 domain containing 3, plant, 0.951 0.962 0.762 0.0
225448751830 PREDICTED: uncharacterized protein LOC10 0.936 0.963 0.743 0.0
224109652772 predicted protein [Populus trichocarpa] 0.888 0.983 0.757 0.0
356576883819 PREDICTED: uncharacterized protein LOC10 0.916 0.956 0.714 0.0
449451701836 PREDICTED: ecotropic viral integration s 0.918 0.937 0.720 0.0
449509015836 PREDICTED: LOW QUALITY PROTEIN: ecotropi 0.918 0.937 0.720 0.0
356534493817 PREDICTED: uncharacterized protein LOC10 0.900 0.941 0.706 0.0
224100885738 predicted protein [Populus trichocarpa] 0.840 0.972 0.762 0.0
357445069823 TBC1 domain family member 8B [Medicago t 0.894 0.928 0.668 0.0
297820256825 hypothetical protein ARALYDRAFT_324032 [ 0.915 0.947 0.690 0.0
>gi|255568157|ref|XP_002525054.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] gi|223535635|gb|EEF37301.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1249 bits (3231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/848 (76%), Positives = 707/848 (83%), Gaps = 35/848 (4%)

Query: 22  RDVYGFAVRPQHVQRYREYANIYKEEEEERSDRWNSFLERQSESAQLPINGLSTEGNNNA 81
           RD YGFAVRPQHVQRYREYANIYKEEEEERSDRW SFLERQ+ESA+LP+N LS +  N A
Sbjct: 13  RDAYGFAVRPQHVQRYREYANIYKEEEEERSDRWKSFLERQAESAELPLNDLSLDEVNKA 72

Query: 82  LRTEAKGEEVGDSLEKVIEVDDSSVKKPGSDSSSENATEKEEILSTTEKKTHRIIIWSEI 141
           L TE   +   D+     E DD S  KPGSD S EN TE EE  S    + HR+ IW+EI
Sbjct: 73  LVTETTEQ---DTRNGCAEDDDFSSDKPGSDVSLENLTENEEKQSIASTRVHRVQIWTEI 129

Query: 142 RPSLRAIEDMMSVRVKKKGSIPKGEQTGRGKPSPPSDESKSLKGASEEDSDDEFYDVEKS 201
           RPSLR+IEDMMS+RVKKKG+ PK +     K  PP++++KS KGASEEDS+DEFYDVE+S
Sbjct: 130 RPSLRSIEDMMSIRVKKKGNQPKDQLDP--KKDPPNEDAKSAKGASEEDSEDEFYDVERS 187

Query: 202 DPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGV 261
           DP QD+ S D VS S TGA A D T L+S FPWKEELEVLVRGG+PMALRGELWQAFVGV
Sbjct: 188 DPVQDNSSSDGVSVSGTGATAADGTPLESYFPWKEELEVLVRGGVPMALRGELWQAFVGV 247

Query: 262 RARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTF 321
           R RRVDKYYQDLL++E+N GNN+EQ   QSD+D+K ST D VC+PEKWKGQIEKDLPRTF
Sbjct: 248 RVRRVDKYYQDLLASETNSGNNVEQ---QSDSDAKVSTTDPVCVPEKWKGQIEKDLPRTF 304

Query: 322 PGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDD 381
           PGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGI+DD
Sbjct: 305 PGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDD 364

Query: 382 YFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPW 441
           YFDGYYSEEMIESQVDQL FEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPW
Sbjct: 365 YFDGYYSEEMIESQVDQLAFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPW 424

Query: 442 ESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQL 501
           ESVLR+WDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQ+LAGSTFDSSQL
Sbjct: 425 ESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQL 484

Query: 502 VLTACMGYQN------------HRPAVVAAVEERSKGLLARKDSQGLASKLYNFKQDPKS 549
           VLTACMGYQN            HR AV+AAVEER+KGL A +DSQGLASKLYNFK DPKS
Sbjct: 485 VLTACMGYQNVNEARLQELRNKHRSAVIAAVEERTKGLQAWRDSQGLASKLYNFKHDPKS 544

Query: 550 MLIDPNKGVQLDDPQTNGNLSRSESGSTNADEVLISLTGDGEIDSVPDLQEQVVWLKVEL 609
           MLI+          Q  G LSRSESGSTNADEVLISLTGD EI+SVPDLQ+QVVWLKVEL
Sbjct: 545 MLIETK--------QNGGELSRSESGSTNADEVLISLTGDMEIESVPDLQDQVVWLKVEL 596

Query: 610 CRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESA 669
           C+LLEEKRSA+LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSEL+R L+DKQEQE+ 
Sbjct: 597 CKLLEEKRSAILRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELQRALSDKQEQENV 656

Query: 670 MIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESM 729
           M+QVLMRVEQEQKVTEDARR+AEQDAAAQRYAAQVLQEKYEEA+ASLAEMEKR VMAESM
Sbjct: 657 MLQVLMRVEQEQKVTEDARRYAEQDAAAQRYAAQVLQEKYEEALASLAEMEKRAVMAESM 716

Query: 730 LEATLQYQSGQIKAQPSPRSPHPDSSARSNQEPTQEVPGRKISLLARPFGLGWRDRNKGK 789
           LEATLQYQSGQ+KAQPSPR+ HPD S RSNQEP QE+P RKISLL+RPFGLGWRDRNK K
Sbjct: 717 LEATLQYQSGQLKAQPSPRASHPD-SPRSNQEPIQEIPARKISLLSRPFGLGWRDRNKAK 775

Query: 790 ANSTDGPADVKPVNEAQSPS----TRSVNDTPSTKAPNETQGPRTE-PLNGAPTPSTTEQ 844
             + +  ++ K  NE QSPS     R V    + +   E Q P  E   N   +PS  E 
Sbjct: 776 PANAEESSNGKASNEVQSPSPEQKAREVQSPGAEQKAGEVQSPGAEQKANKMQSPS-AEP 834

Query: 845 KGTDGVEV 852
           +GT+G+ V
Sbjct: 835 EGTNGLSV 842

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448751|ref|XP_002281489.1| PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera] gi|297736455|emb|CBI25326.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109652|ref|XP_002315267.1| predicted protein [Populus trichocarpa] gi|222864307|gb|EEF01438.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576883|ref|XP_003556559.1| PREDICTED: uncharacterized protein LOC100809869 [Glycine max] Back     alignment and taxonomy information
>gi|449451701|ref|XP_004143600.1| PREDICTED: ecotropic viral integration site 5 protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449509015|ref|XP_004163470.1| PREDICTED: LOW QUALITY PROTEIN: ecotropic viral integration site 5 protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534493|ref|XP_003535788.1| PREDICTED: uncharacterized protein LOC100775232, partial [Glycine max] Back     alignment and taxonomy information
>gi|224100885|ref|XP_002312052.1| predicted protein [Populus trichocarpa] gi|222851872|gb|EEE89419.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357445069|ref|XP_003592812.1| TBC1 domain family member 8B [Medicago truncatula] gi|355481860|gb|AES63063.1| TBC1 domain family member 8B [Medicago truncatula] Back     alignment and taxonomy information
>gi|297820256|ref|XP_002878011.1| hypothetical protein ARALYDRAFT_324032 [Arabidopsis lyrata subsp. lyrata] gi|297323849|gb|EFH54270.1| hypothetical protein ARALYDRAFT_324032 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
TAIR|locus:2097213777 AT3G55020 [Arabidopsis thalian 0.854 0.939 0.652 2.2e-247
TAIR|locus:2077472400 AT3G07890 [Arabidopsis thalian 0.258 0.552 0.362 1.5e-37
ZFIN|ZDB-GENE-030131-31351125 si:dkey-110k5.6 "si:dkey-110k5 0.223 0.169 0.384 3.1e-31
UNIPROTKB|F1N7K91070 TBC1D8 "Uncharacterized protei 0.274 0.218 0.349 3.6e-31
UNIPROTKB|Q6ZT07 1266 TBC1D9 "TBC1 domain family mem 0.204 0.138 0.410 1e-30
UNIPROTKB|F1PHW7 1199 TBC1D9 "Uncharacterized protei 0.204 0.145 0.410 1.1e-30
UNIPROTKB|F1MS95 1226 TBC1D9 "Uncharacterized protei 0.204 0.142 0.410 1.2e-30
UNIPROTKB|J9P6591120 TBC1D8B "Uncharacterized prote 0.204 0.156 0.398 1.3e-30
UNIPROTKB|J9PB561120 TBC1D8B "Uncharacterized prote 0.204 0.156 0.398 1.3e-30
UNIPROTKB|F1P8R41121 TBC1D8B "Uncharacterized prote 0.204 0.156 0.398 1.3e-30
TAIR|locus:2097213 AT3G55020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2383 (843.9 bits), Expect = 2.2e-247, P = 2.2e-247
 Identities = 495/759 (65%), Positives = 571/759 (75%)

Query:     4 AASNSNAINHPLLAFEHKRDVYGFAVRPQHVQRYREYANIYKXXXXXRSDRWNSFLERQS 63
             AA+ ++  ++PL+AFEHKRD YGF VRPQHVQRYREYA+IYK     RSDRW+SFLE   
Sbjct:    10 AAAAASKPSNPLVAFEHKRDAYGFPVRPQHVQRYREYADIYKEEEEERSDRWSSFLEDHV 69

Query:    64 ESAQLPINGLSTEGNNNALRTEAKGEEVGDSLEKVIEXXXXXXXXXXXXXXXENATEKEE 123
             ES +LP NG S+E N +A  +E++ E+  + L K                  +NA+E EE
Sbjct:    70 ESTELPTNG-SSE-NIHAPFSESEKEKEKE-LNKG-PGEDLHTDKLGSDVTPDNASE-EE 124

Query:   124 ILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQTG-RGKPSPPSDESKS 182
                  EK  HR+ +W+EIRPSLR+IED+MS+RVKKKG + K EQ   + K SP  D++KS
Sbjct:   125 GHPDAEKNVHRVQLWTEIRPSLRSIEDLMSIRVKKKGDLSKSEQEAPKVKISPSFDDAKS 184

Query:   183 LKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLV 242
              KGAS+ DS+DEFYDVE+SD  QD  S D    S    VA DA+ L S  PWKEELEVL+
Sbjct:   185 SKGASDIDSEDEFYDVERSD-VQDGSSSDGTGVSGI-PVAADASPL-STCPWKEELEVLI 241

Query:   243 RGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHXXXXXXXXXXXXXXX 302
             RGG+PMALRGELWQAFVGVR RR   YYQ+LL+A+ +  N +EQ                
Sbjct:   242 RGGVPMALRGELWQAFVGVRKRRCKDYYQNLLAADGSV-NTIEQEDMQHVDDKGSSTES- 299

Query:   303 VCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNXXXXXX 362
             + + EKWKGQIEKDLPRTFPGHPALD+DGRNALRRLLTAYARHNPSVGYCQAMN      
Sbjct:   300 IAVVEKWKGQIEKDLPRTFPGHPALDDDGRNALRRLLTAYARHNPSVGYCQAMNFFAALL 359

Query:   363 XXXMPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQ 422
                MPEENAFWAL+G++DDYF+GYYSEEMIESQVDQLV EELVRERFPKLV+HLDYLGVQ
Sbjct:   360 LLLMPEENAFWALIGLIDDYFNGYYSEEMIESQVDQLVLEELVRERFPKLVHHLDYLGVQ 419

Query:   423 VAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAG 482
             VAWVTGPWFLSIFMNMLPWESVLR+WDVLLFEG RVMLFRTALALMELYGPALVTTKDAG
Sbjct:   420 VAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGTRVMLFRTALALMELYGPALVTTKDAG 479

Query:   483 DAVTLLQTLAGSTFDSSQLVLTACMGYQN------------HRPAVVAAVEERSKGLLAR 530
             DAVTLLQ+L GSTFDSSQLVLTACMGYQN            HRPAV+AA+EERSKGL A 
Sbjct:   480 DAVTLLQSLTGSTFDSSQLVLTACMGYQNVHEIRLQELRSKHRPAVIAALEERSKGLQAW 539

Query:   531 KDSQGLASKLYNFKQDPKSMLIDPNKGVQLDDPQTNGNLSRSESGSTNADEVLISLTGDG 590
             +DS+GLASKLYNFKQDPKS+L+D    +      +NG+LSRSESGS+NADEVL+SLTGDG
Sbjct:   540 RDSKGLASKLYNFKQDPKSVLVDSKASL------SNGSLSRSESGSSNADEVLVSLTGDG 593

Query:   591 EIDSVPDLQEQVVWLKVELCXXXXXXXXXXXXXXXXXXXXXXMVKQDNRRQLSARVEQLE 650
             E+DSV DLQ QV+WLK ELC                      +VK+DNRRQLSA+VEQLE
Sbjct:   594 EVDSVQDLQAQVLWLKAELCKLLEEKRSALLRAEELEIALMEIVKEDNRRQLSAKVEQLE 653

Query:   651 QEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFXXXXXXXXXXXXXXXXEKYE 710
             QE++E++R+L+DKQEQE AM+QVLMRVEQEQKVTEDAR F                EKYE
Sbjct:   654 QEMAEVQRLLSDKQEQEGAMLQVLMRVEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYE 713

Query:   711 EAIASLAEMEKRVVMAESMLEATLQYQSGQIKAQPSPRS 749
             EA+A+LAEMEKR VMAESMLEATLQYQSGQ+KAQPSPR+
Sbjct:   714 EAVAALAEMEKRAVMAESMLEATLQYQSGQLKAQPSPRT 752
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3135 si:dkey-110k5.6 "si:dkey-110k5.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7K9 TBC1D8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZT07 TBC1D9 "TBC1 domain family member 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHW7 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MS95 TBC1D9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P659 TBC1D8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PB56 TBC1D8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8R4 TBC1D8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 5e-60
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-59
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-41
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.001
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
pfam13851201 pfam13851, GAS, Growth-arrest specific micro-tubul 0.003
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 0.003
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  202 bits (516), Expect = 5e-60
 Identities = 86/230 (37%), Positives = 121/230 (52%), Gaps = 27/230 (11%)

Query: 248 MALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPE 307
            +LRGE+W+  +G                     +  +Q  S S        +DS     
Sbjct: 1   DSLRGEVWKLLLGNL-------------------SESKQRDSVSQYSKLLKLEDSPDE-- 39

Query: 308 KWKGQIEKDLPRTFPGHPALDN-DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLL- 365
               QIEKD+PRTFP H    N +G+  LRR+L AY+ +NP VGYCQ MNF AA LLL+ 
Sbjct: 40  ---EQIEKDVPRTFPHHFFFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVV 96

Query: 366 MPEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAW 425
           + EE AFW  + +L+     ++       Q D  VFEEL+++  P+L  HL  LG+  + 
Sbjct: 97  LDEEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSL 156

Query: 426 VTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPAL 475
               WFL++F   LP E+VLR+WD L  EG +  LFR ALA+++ +   L
Sbjct: 157 FASKWFLTLFARELPLETVLRLWD-LFLEGGKFFLFRVALAILKRFRKEL 205

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding Back     alignment and domain information
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 854
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2222848 consensus Uncharacterized conserved protein, conta 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG4347671 consensus GTPase-activating protein VRP [General f 100.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.97
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.94
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.92
KOG1091625 consensus Ypt/Rab-specific GTPase-activating prote 99.91
KOG2224781 consensus Uncharacterized conserved protein, conta 99.91
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.88
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.87
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.83
KOG3636669 consensus Uncharacterized conserved protein, conta 99.76
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.71
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 99.26
PF149611296 BROMI: Broad-minded protein 97.71
KOG1648813 consensus Uncharacterized conserved protein, conta 97.69
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.3
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 89.58
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 87.09
PTZ00121 2084 MAEBL; Provisional 86.7
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 86.19
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 82.78
PF05701522 WEMBL: Weak chloroplast movement under blue light; 82.26
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 80.79
KOG2072988 consensus Translation initiation factor 3, subunit 80.67
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-51  Score=459.46  Aligned_cols=345  Identities=42%  Similarity=0.675  Sum_probs=274.3

Q ss_pred             ccccCCCCCCCCCCCchhhHhhhhcccccccceeeeeccccccHHHHHHHHHHHHhhcCCCCCCCc-CCCCCCCCCCccc
Q 041508          102 DDSSVKKPGSDSSSENATEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQ-TGRGKPSPPSDES  180 (854)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  180 (854)
                      .....+..+++.+..+...  |.+... ..++++..|. ||+.|.+++++|+   +...-...+.+ -....+....+..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~--e~~~~~-~~~~~~~~~~-~~e~l~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~  111 (436)
T KOG2058|consen   39 DGLCISKEGDDVTLGNKYE--ESKEDL-KLVQKVISWA-IRELLQAIEDLMS---KNNGFDQYSLQKLIGLPPSDGYLKW  111 (436)
T ss_pred             hhccccccccccccccchh--ccccch-hcccccchhh-hhhhhhhhhhhhh---ccCcccccchhhcccCCcchhhhHH
Confidence            4455556666666444333  444444 5889999999 9999999999999   33222222222 2222222333333


Q ss_pred             ccccCCCCCCCCcccccccCCCCCCCCCCCCCCCccchhhhhhhhhcccccCCCHHHHHHHHhCCCCchhHHHHHHHHhc
Q 041508          181 KSLKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVG  260 (854)
Q Consensus       181 ~~~~~~~~~~s~e~fy~~~~~dp~~~~ps~~~~s~e~~s~l~~~~~~le~~~~~~ekLk~Lir~GIP~~LR~~VW~lLLG  260 (854)
                      -+..+..++.+...|+.....+ ....                   .+....++.++|+.++|+|||+.+|+.||..++|
T Consensus       112 ~s~~~~~~~r~~~~~~l~~~~~-~~~~-------------------~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g  171 (436)
T KOG2058|consen  112 LSSYLAYEERRQLRWELELQSN-IKLH-------------------SPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSG  171 (436)
T ss_pred             HHHhhhhhhhHHHHHHHHhhhh-hccc-------------------ccccccCCcHHHHHHHHcCCChhhhhHHHHHHhc
Confidence            3444444444444444444333 1110                   0345667889999999999999999999999999


Q ss_pred             CccCCC-hHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhhhcCCcCCCCC-CCCC---hhhHHHH
Q 041508          261 VRARRV-DKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGH-PALD---NDGRNAL  335 (854)
Q Consensus       261 i~~~~~-e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIekDV~RTfp~~-~~F~---e~g~~~L  335 (854)
                      ...... +.+|+.++......                         .....++|+.|+.||||++ ++|.   +.++..|
T Consensus       172 ~~~~~~~~~~yq~ll~~~~~~-------------------------~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L  226 (436)
T KOG2058|consen  172 ARRQLNYPGYYQELLRKGDEK-------------------------KSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL  226 (436)
T ss_pred             chhhccCchhHHHHHhcCCCc-------------------------cchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence            433333 78999888765321                         0146799999999999999 7884   3458999


Q ss_pred             HHHHHHHHhhCCCCCccccchHHHHHHhhcCC-hHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhh
Q 041508          336 RRLLTAYARHNPSVGYCQAMNFFAALLLLLMP-EENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVN  414 (854)
Q Consensus       336 rrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~-EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~  414 (854)
                      +|||.||++|||.||||||||+|||+||++|+ |++|||||+.++++|+|.||++++.+.++++.+|+.||+..+|+|+.
T Consensus       227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~  306 (436)
T KOG2058|consen  227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSL  306 (436)
T ss_pred             HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHH
Confidence            99999999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCC
Q 041508          415 HLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGS  494 (854)
Q Consensus       415 HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~  494 (854)
                      ||..++++..+|++.||+|+|++.+|.++++||||++|++|.++ +|++|+|+++..++.|+.+.+..+++.+|..+...
T Consensus       307 ~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv-lfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~  385 (436)
T KOG2058|consen  307 HLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV-LFRVALAILKKHEEEILKEDSSKEILRVLPDLTKR  385 (436)
T ss_pred             hhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 99999999999999999999999999999877655


Q ss_pred             CCCHH
Q 041508          495 TFDSS  499 (854)
Q Consensus       495 ~~D~~  499 (854)
                      .+|.+
T Consensus       386 ~~~~~  390 (436)
T KOG2058|consen  386 SIDPD  390 (436)
T ss_pred             hhhhh
Confidence            55443

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-19
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 3e-17
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 2e-16
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 5e-10
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 9e-06
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-05
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 2e-04
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-04
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 238 LEVLVRGGLPMALRGELWQAFVGVRARR--VDKYYQDLLSAESNFGNNMEQHXXXXXXXX 295
           L  LV+ G+P ALR E+WQ   G    +  +D+Y + L++ +S                 
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXLDRY-RILITKDS----------------- 67
Query: 296 XXXXXXXVCLPEKWKGQIEKDLPRTFPGHPALDN---DGRNALRRLLTAYARHNPSVGYC 352
                         +  I +D+ RTFP H    +   DG+ +L ++  AY+ ++  +GYC
Sbjct: 68  ------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYC 115
Query: 353 QAMNXXXXXXXXXMPEENAFWALMGILDDY-FDGYYSEEMIESQVDQLVFEELVRERFPK 411
           Q  +          PEE AF  L+ I  DY     Y     +        E L +E+ P 
Sbjct: 116 QGQSFLAAVLLLHXPEEQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPD 175
Query: 412 LVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALME 469
           L +H   L ++       WFL++F    P   V  I D+LL EG  ++ F  ALAL++
Sbjct: 176 LHSHFSDLNLEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNII-FHVALALLK 232
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
2qq8_A334 TBC1 domain family member 14; structural genomics 9e-94
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-88
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-86
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-66
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 3e-64
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 8e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
 Score =  297 bits (761), Expect = 9e-94
 Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 13/300 (4%)

Query: 235 KEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDND 294
             ++  L   G+P ++RG++W   +G       + +   L+       ++    S+ +N+
Sbjct: 38  SRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENE 97

Query: 295 SKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDND--GRNALRRLLTAYARHNPSVGYC 352
               +       E     I+ D+ RTFP            + L  +L AY  + P VGY 
Sbjct: 98  DAGFSAAD---REASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYV 154

Query: 353 QAMNFFAALLLLLMPEENAFWALMGILDDY-FDGYYSEEMIESQVDQLVFEELVRERFPK 411
           Q M+F AA+L+L +   +AF A   +L+      ++  +          FE    E  PK
Sbjct: 155 QGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPK 214

Query: 412 LVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELY 471
           L  H     +        W  +++   LP +   RIWDV   +G    LFRTAL +++L+
Sbjct: 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKLF 273

Query: 472 GPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTAC----MGYQNHRPAVVAAVEERSKGL 527
              L    D       L  L      + +L  +               V+ A+++ S+ +
Sbjct: 274 EDILTKM-DFIHMAQFLTRLP-EDLPAEELFASIATIQMQSRNKKWAQVLTALQKDSREM 331
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 89.36
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.99
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 85.7
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 85.21
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 84.4
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 81.88
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.3e-48  Score=421.01  Aligned_cols=287  Identities=24%  Similarity=0.385  Sum_probs=235.2

Q ss_pred             CHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhh
Q 041508          234 WKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQI  313 (854)
Q Consensus       234 ~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qI  313 (854)
                      ..++|+.++++|||+.+|+.||++|+|+......+.|..++.+.......+........... .  ...........++|
T Consensus        37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d-~--~~~~~~~~~~~~~I  113 (334)
T 2qq8_A           37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENED-A--GFSAADREASLELI  113 (334)
T ss_dssp             CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC-------------------------CCHHHHH
T ss_pred             ChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccc-c--ccccccchhHHHHH
Confidence            34789999999999999999999999997666778898888765432211111100000000 0  00111224567999


Q ss_pred             hhcCCcCCCCCCCCCh--hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhh-cCCCCch
Q 041508          314 EKDLPRTFPGHPALDN--DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYF-DGYYSEE  390 (854)
Q Consensus       314 ekDV~RTfp~~~~F~e--~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l-~~yfs~~  390 (854)
                      ++||+||||++++|+.  .++..|++||.+|+.+||++|||||||+||++||++++|++|||||+.||+++. .+||..+
T Consensus       114 ~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~  193 (334)
T 2qq8_A          114 KLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVD  193 (334)
T ss_dssp             HHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSC
T ss_pred             HHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCC
Confidence            9999999999999975  468999999999999999999999999999999999999999999999999874 5688888


Q ss_pred             hHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 041508          391 MIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMEL  470 (854)
Q Consensus       391 ~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~  470 (854)
                      ..++...+.+|+.||+.++|+||.||.+.|+.+.+|+++||+|||+++||++.++||||+||++|..+ +|++|+|||..
T Consensus       194 ~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~-l~~valaiL~~  272 (334)
T 2qq8_A          194 HGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKL  272 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Confidence            88888888999999999999999999999999999999999999999999999999999999999988 88999999999


Q ss_pred             hhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh----cchHHHHHHHHHhhh
Q 041508          471 YGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQN----HRPAVVAAVEERSKG  526 (854)
Q Consensus       471 ~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~----~r~~V~~~le~r~k~  526 (854)
                      +++.|+++ |+++++.+|+++|.. +|++.|+..|+.....    +.+.++..++++.|+
T Consensus       273 ~~~~Ll~~-d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~~~k~~~~~~~~~~~~~~~  330 (334)
T 2qq8_A          273 FEDILTKM-DFIHMAQFLTRLPED-LPAEELFASIATIQMQSRNKKWAQVLTALQKDSRE  330 (334)
T ss_dssp             THHHHHTC-CHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEETTEEHHHHHHHHHC----
T ss_pred             HHHHHhcC-CHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcHHHhhHHHHHHHHHHHHHh
Confidence            99999996 899999999999765 8999999999876654    345666666665554
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 854
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-29
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-14
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 1e-29
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 41/182 (22%)

Query: 235 KEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDND 294
           +++L  +   G+P   R  +W+  +G       +    L      + ++++   S   + 
Sbjct: 22  QQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSR 81

Query: 295 SKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPAL-DNDGRNALRRLLTAYARHNPSVGYCQ 353
                            QIE D+PRT P  P       +N+L+R+L  +A  +P+ GY Q
Sbjct: 82  D-----------IPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQ 130

Query: 354 AMNFFAALLLLLMP-----------------------------EENAFWALMGILDDYFD 384
            +N                                        E + FW L  +L+   D
Sbjct: 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD 190

Query: 385 GY 386
            Y
Sbjct: 191 NY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.94
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.67
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.8e-27  Score=235.35  Aligned_cols=143  Identities=23%  Similarity=0.394  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhh
Q 041508          232 FPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKG  311 (854)
Q Consensus       232 ~~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~  311 (854)
                      ....++|+.++++|||+.+|+.||++|+|+.+.....+...+..+...|........           ......+.+..+
T Consensus        19 ~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~-----------~~~~~~~~~~~~   87 (194)
T d1fkma1          19 IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTF-----------SDQHSRDIPTWH   87 (194)
T ss_dssp             BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTS-----------SSSCSTHHHHHH
T ss_pred             CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhh-----------hcccccchHHHH
Confidence            456789999999999999999999999999887776666666666555533322221           112223457789


Q ss_pred             hhhhcCCcCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC------------------------
Q 041508          312 QIEKDLPRTFPGHPALD-NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM------------------------  366 (854)
Q Consensus       312 qIekDV~RTfp~~~~F~-e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm------------------------  366 (854)
                      +|++||+||||++++|. +.++..|+|||.+|+.+||++|||||||+||++||+++                        
T Consensus        88 ~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~  167 (194)
T d1fkma1          88 QIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVD  167 (194)
T ss_dssp             HHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCH
T ss_pred             HHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhh
Confidence            99999999999999995 67899999999999999999999999999999999764                        


Q ss_pred             -----ChHHHHHHHHHhhHhhhcC
Q 041508          367 -----PEENAFWALMGILDDYFDG  385 (854)
Q Consensus       367 -----~EedAFw~f~~Lm~~~l~~  385 (854)
                           .|++|||||+.||+.+..+
T Consensus       168 ~~~~~~Ead~F~~f~~lm~~i~d~  191 (194)
T d1fkma1         168 EQITDLEADTFWCLTKLLEQITDN  191 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhcc
Confidence                 1789999999999986433
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure