Citrus Sinensis ID: 041572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
YGPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Secondary Structure (PSIPRED)
ccccccHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccHHHHHccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHcccccccHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHcHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
ygphphlhsenadgdlekqlsetspfafGLYISYFylnpyyppsiksirntKLTHKQTLEILRIICVGAVDIATAAKETENvlkkpmftaakFGIYEIVMEIIISyfpwslsfsnedgDDIFHAAVKHRQENVFNIIFnmpkaqtffvadidvkGVNILHSaarsvpssevsGAALQMQRELQWFklndkdktprelfTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAitvpgdsdsrgmpnylhepsftiFGISNALALFSSVVSVLMFLGILtsrfseedflVSLPRKLIIGLITLFFSIASLM
Flexible Loop (DISEMBL)
ygphphlhsenadGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKetenvlkkpmftAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWfklndkdktprelFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Low Complexity Region (SEG)
YGPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLvatlvitiafaaaitvPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Disordered region (IsUnstruct)
************************PFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA******************ELQWFKL****************GLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGD****GMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIA***
Disordered Region (DISOPRED)
YGPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATA*KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Disordered Region (DISEMBL)
*********ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA***********ALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Disordered Region (DISPRO)
YGPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YGPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.412	0.218	0.296	2e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 167 PSSEVSGAALQMQRELQWFKLNDKDKTPREL--FTEEHKGLVKEGEKWMKDTAQSCSLVA 224
           P  E+     Q++ ++   +L    +T + +   ++E + L +EG   + +   S ++VA
Sbjct: 371 PRDELRSTVTQIKNDVH-IQLEQTKRTNKNVHNISKELRKLHREG---INNATNSVTVVA 426

Query: 225 TLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSR 284
            L  T+AFAA  TVPG  ++ G    +   SF IF I NALALF+S+  V++ + ++   
Sbjct: 427 VLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGE 486

Query: 285 FSEEDFLVSLPRKLI 299
              E  +V +  KL+
Sbjct: 487 TKAEKRVVEVINKLM 501

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255544802	590	ankyrin repeat-containing protein, putat	0.843	0.447	0.526	1e-70
224136692	743	predicted protein [Populus trichocarpa]	0.945	0.398	0.440	6e-64
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.884	0.163	0.465	6e-64
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.961	0.381	0.437	9e-64
297737987	1855	unnamed protein product [Vitis vinifera]	0.853	0.143	0.467	5e-62
15230158	598	ankyrin repeat-containing protein [Arabi	0.945	0.494	0.418	2e-61
255552378	580	ankyrin repeat-containing protein, putat	0.853	0.460	0.484	4e-61
297834778	605	predicted protein [Arabidopsis lyrata su	0.952	0.492	0.417	2e-60
9293890	653	unnamed protein product [Arabidopsis tha	0.875	0.419	0.441	2e-60
224131182	543	predicted protein [Populus trichocarpa]	0.859	0.495	0.458	5e-60

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/285 (52%), Positives = 195/285 (68%), Gaps = 21/285 (7%)

Query: 45  IKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETE--NVLKKPMFTAAKFGIYEIVMEI 102
           ++ I  T L HKQ +E+LR +    +  A  A E++  ++L     TA KFGI E V E 
Sbjct: 248 LRDIDKTLLMHKQAVELLRNL----ISEALKANESQLHSLLGSSTQTATKFGIQEFVAEA 303

Query: 103 IISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA 162
           I SY P+S+ F + DG  IFH A+KHRQE +FN+++ +   +    +  D  G  +LH A
Sbjct: 304 IKSY-PYSVWFRDGDGCTIFHLAIKHRQEKIFNLLYQIGNHKHIITSLADSLGNTMLHLA 362

Query: 163 ARSVPSSEVSGAALQMQRELQWFK------------LNDKD-KTPRELFTEEHKGLVKEG 209
               PSS++SGAALQMQRELQWFK            L DK+ +TPR++FTE HK LV++G
Sbjct: 363 GTLQPSSKISGAALQMQRELQWFKEVEKVIQPSYKELKDKNGRTPRQVFTEGHKSLVEQG 422

Query: 210 EKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDS-RGMPNYLHEPSFTIFGISNALALF 268
           EKWMKDTA SC+ VA LVIT+ FAAA TVPG ++S +G+P YL+E +F IF IS+AL LF
Sbjct: 423 EKWMKDTATSCATVAALVITVVFAAAFTVPGGNNSDQGIPIYLNETAFVIFAISDALGLF 482

Query: 269 SSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           SS  S+LMFLGILTSR+SE DFL +LP +L IGLITLFFSIAS++
Sbjct: 483 SSSTSLLMFLGILTSRYSEGDFLKALPMRLSIGLITLFFSIASML 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 144/327 (44%), Positives = 200/327 (61%), Gaps = 31/327 (9%)

Query: 11  NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILR-----II 65
           N +  L     ++S FA    + +++   Y  P IK++ + KL H Q LE+++     ++
Sbjct: 361 NGETALHVLARKSSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQVL 420

Query: 66  CVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISY--FPWSLSFSNEDGDDIFH 123
            +    IA    E      +P+F AA+FGI E +  +I SY    W +   NE    IFH
Sbjct: 421 LLDDCQIA----ELLASPSQPLFVAAEFGIVEFITALIRSYPDLIWKV---NEQSRSIFH 473

Query: 124 AAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSE---VSGAALQMQR 180
            AV HRQE +F++I ++   +    A  D+   NILH A    P  +   +SGAALQMQR
Sbjct: 474 IAVAHRQEKIFSLINDIGAHKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQR 533

Query: 181 ELQWFK------------LNDKD-KTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLV 227
           EL WFK            + DK+ +TPR LFTEEH+GLVKEGEKWMK+TA SC L+ATL+
Sbjct: 534 ELLWFKEVEKNVQPSLKEMRDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLI 593

Query: 228 ITIAFAAAITVPGDSD-SRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFS 286
            T+ FAA  TVPG +D S+G P  L   SF +F +++A ALFSSV S+LMFL ILTSR++
Sbjct: 594 TTVMFAAIFTVPGGNDNSKGTPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYA 653

Query: 287 EEDFLVSLPRKLIIGLITLFFSIASLM 313
           EEDF+ SLP++L++GL TLF SIA+++
Sbjct: 654 EEDFVESLPKRLVVGLATLFCSIAAML 680

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 193/303 (63%), Gaps = 26/303 (8%)

Query: 33  SYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP---MFT 89
           +YF L P+  P  KS+ + KL H Q LE+++ +    + +    K  E +++ P   +FT
Sbjct: 405 TYFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGE-LIRTPSRLLFT 463

Query: 90  AAKFGIYEIVMEIIISY--FPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFF 147
           AA+ GI E +  +I SY    W +   N+    IFH AV HRQE +FN+I+ +   + + 
Sbjct: 464 AAELGIVEFITVLIRSYPDLIWKV---NDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYI 520

Query: 148 VADIDVKGVNILHSAARSVPSSEV---SGAALQMQRELQWFK-------------LNDKD 191
            A  D K  N+LH A +  PS+ +   SGAA Q+QREL WFK              N++ 
Sbjct: 521 AAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQG 580

Query: 192 KTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPG-DSDSRGMPNY 250
           +TP+ LFTEEHK LV+EGEKWMKDTA SC +VATL+ T+ FAAA +VPG + D  G P +
Sbjct: 581 RTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIF 640

Query: 251 LHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIA 310
           L + SF +F IS+ALALFSS  S+L+FL ILTSR++EEDFL SLP +LIIGL TLF S+A
Sbjct: 641 LTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVA 700

Query: 311 SLM 313
           ++M
Sbjct: 701 TMM 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 144/329 (43%), Positives = 201/329 (61%), Gaps = 28/329 (8%)

Query: 9   SENADGDLEKQLSETSPFAF--GLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIIC 66
           + + +GD    +    P AF  G  +  ++   Y  P  KS+ + KL H Q LE+++ + 
Sbjct: 340 ARDGNGDTALHVLARKPLAFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLW 399

Query: 67  VGAVDIATAAKETENVLKKP---MFTAAKFGIYEIVMEIIISY--FPWSLSFSNEDGDDI 121
              + +    K  E +++ P   +FTAA+ GI E +  +I SY    W +   N+    I
Sbjct: 400 DKILSLDHDPKIGE-LIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKV---NDQSQTI 455

Query: 122 FHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEV---SGAALQM 178
           FH AV HRQE +FN+I+ +   + +  A  D K  N+LH A +  PS+ +   SGAA Q+
Sbjct: 456 FHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQL 515

Query: 179 QRELQWFK-------------LNDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVAT 225
           QREL WFK              N++ +TP+ LFTEEHK LV+EGEKWMKDTA SC +VAT
Sbjct: 516 QRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVAT 575

Query: 226 LVITIAFAAAITVPG-DSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSR 284
           L+ T+ FAAA +VPG + D  G P +L + SF +F IS+ALALFSS  S+L+FL ILTSR
Sbjct: 576 LIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSR 635

Query: 285 FSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           ++EEDFL SLP +LIIGL TLF S+A++M
Sbjct: 636 YAEEDFLESLPNRLIIGLATLFISVATMM 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 137/293 (46%), Positives = 187/293 (63%), Gaps = 26/293 (8%)

Query: 43  PSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP---MFTAAKFGIYEIV 99
           P  KS+ + KL H Q LE+++ +    + +    K  E +++ P   +FTAA+ GI E +
Sbjct: 350 PGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGE-LIRTPSRLLFTAAELGIVEFI 408

Query: 100 MEIIISY--FPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN 157
             +I SY    W +   N+    IFH AV HRQE +FN+I+ +   + +  A  D K  N
Sbjct: 409 TVLIRSYPDLIWKV---NDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNN 465

Query: 158 ILHSAARSVPSSEV---SGAALQMQRELQWFK-------------LNDKDKTPRELFTEE 201
           +LH A +  PS+ +   SGAA Q+QREL WFK              N++ +TP+ LFTEE
Sbjct: 466 MLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEE 525

Query: 202 HKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPG-DSDSRGMPNYLHEPSFTIFG 260
           HK LV+EGEKWMKDTA SC +VATL+ T+ FAAA +VPG + D  G P +L + SF +F 
Sbjct: 526 HKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFA 585

Query: 261 ISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           IS+ALALFSS  S+L+FL ILTSR++EEDFL SLP +LIIGL TLF S+A++M
Sbjct: 586 ISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMM 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230158|ref|NP_188497.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|332642609|gb|AEE76130.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 197/330 (59%), Gaps = 34/330 (10%)

Query: 4   HPHL-HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEIL 62
           +P L ++ ++D D        +P+AF          P  P  I+ +   KL H Q  EIL
Sbjct: 220 YPKLAYTRDSDNDTAIMALAQTPYAF----------PSVPRIIRRVYKLKLGHAQAKEIL 269

Query: 63  RIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISY--FPWSLSFSNEDGDD 120
             IC   +    AA++    L + +F A + GI E + E++  Y    WS    N  G +
Sbjct: 270 DCIC-QEIPKFDAAQQKNAGLNQALFKAVENGIVEYIEEMMRHYPDIVWS---KNSSGLN 325

Query: 121 IFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVS---GAALQ 177
           IF  AV  RQE +F++I+N+   +     + D+   N+LH AA   P+S ++   GAALQ
Sbjct: 326 IFFYAVSQRQEKIFSLIYNIGAKKNILATNWDIFHNNMLHHAAYRAPASRLNLIPGAALQ 385

Query: 178 MQRELQWFKLNDK--------------DKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLV 223
           MQRELQWFK  +K               KTP+ LFT++HK LV++GEKWMK+TA SC++V
Sbjct: 386 MQRELQWFKEVEKLVQPKHRKMVNLKQKKTPKALFTDQHKDLVEQGEKWMKETATSCTVV 445

Query: 224 ATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTS 283
           A L+ T+ F++A TVPG   S GMP Y+H+  F IF IS+A++LF+S +S+LMFLGIL S
Sbjct: 446 AALITTMMFSSAFTVPGGYRSDGMPLYIHQHRFKIFLISDAISLFTSCMSLLMFLGILKS 505

Query: 284 RFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           R+ EEDFL SLP KLI+GL+ LF S+A+++
Sbjct: 506 RYREEDFLRSLPTKLIVGLLALFLSMATMI 535

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552378|ref|XP_002517233.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543604|gb|EEF45133.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/289 (48%), Positives = 182/289 (62%), Gaps = 22/289 (7%)

Query: 43  PSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAK-ETENV-LKKPMFTAAKFGIYEIVM 100
           P ++ + N KLTH Q  E+L  +C    +I+T  K E EN+ + + +F A K G  E V 
Sbjct: 233 PGLEYLYNLKLTHVQAHELLCCLCQ---EISTLHKSEFENIGVYRAIFKAVKHGTVEFVE 289

Query: 101 EIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH 160
           E+   ++P  +   +E    IF  AV  RQE VFN+I+ M   +       D    NILH
Sbjct: 290 EMT-KHYPDIIWCEDECNRGIFMYAVLQRQEKVFNLIYKMGAKKNSIATSWDKYFNNILH 348

Query: 161 SAARSVPSSE---VSGAALQMQRELQWFK-------------LNDKDKTPRELFTEEHKG 204
            AA   PSS+   VSGAALQMQRELQW+K             +N + KTPR LFTE HK 
Sbjct: 349 QAASPPPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYKEMVNFQRKTPRALFTESHKK 408

Query: 205 LVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNA 264
           LV+EGEKWMKDTA S ++VA L+ TI F+A  TVPG  D  G P YL+E  F +F +++A
Sbjct: 409 LVEEGEKWMKDTATSSTVVAALIATIMFSAIFTVPGGYDQYGKPLYLYEGVFMVFMVADA 468

Query: 265 LALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           ++LF+S  S+LMFLGILT+R+ EEDFL SLP KLI+GL TLFFSIA++M
Sbjct: 469 MSLFASTSSILMFLGILTARYREEDFLKSLPTKLIVGLSTLFFSIATMM 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834778|ref|XP_002885271.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331111|gb|EFH61530.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/328 (41%), Positives = 197/328 (60%), Gaps = 30/328 (9%)

Query: 4   HPHL-HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEIL 62
           +P L ++ ++D D        +P AF          P  P  I+ +   KL H Q  EIL
Sbjct: 220 YPKLAYTRDSDNDTAIIALAQTPHAF----------PSVPHIIRRVYKLKLGHAQAKEIL 269

Query: 63  RIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIF 122
             IC   +    AA++    L + +F A + GI E + E++  ++P  + F +  G +IF
Sbjct: 270 DCIC-QEIPKFDAAQQKNAGLNQALFKAVENGIVEYIEEMM-RHYPDIVWFKDSCGLNIF 327

Query: 123 HAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVS---GAALQMQ 179
             AV  RQE +F++I+NM   +     + D    N+LH AA   P+S ++   GAALQMQ
Sbjct: 328 FYAVSQRQEKIFSLIYNMGAKKNILATNWDKFHNNMLHHAAYRAPASRLNLIPGAALQMQ 387

Query: 180 RELQWFKLNDK--------------DKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLVAT 225
           RELQWFK  ++               KTP+ LFT++HK LV++GEKWMK+TA SC++VA 
Sbjct: 388 RELQWFKEVERLVQPKHRKMVNLKQKKTPKALFTDQHKDLVEQGEKWMKETAASCTVVAA 447

Query: 226 LVITIAFAAAITVPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRF 285
           L+ T+ F++A TVPG   S GMP Y+H+  F IF IS+A++LF+S +S+LMFLGIL SR+
Sbjct: 448 LITTMMFSSAFTVPGGYRSDGMPLYIHKHMFKIFLISDAISLFTSCMSLLMFLGILKSRY 507

Query: 286 SEEDFLVSLPRKLIIGLITLFFSIASLM 313
            EEDFL SLP KLI+GL +LF S+A++M
Sbjct: 508 REEDFLRSLPTKLIVGLFSLFLSMATMM 535

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293890|dbj|BAB01793.1| unnamed protein product [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/297 (44%), Positives = 185/297 (62%), Gaps = 23/297 (7%)

Query: 36  YLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGI 95
           +L   +P  I+ +   KL H Q  EIL  IC   +    AA++    L + +F A + GI
Sbjct: 298 HLKYLFPRIIRRVYKLKLGHAQAKEILDCIC-QEIPKFDAAQQKNAGLNQALFKAVENGI 356

Query: 96  YEIVMEIIISY--FPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDV 153
            E + E++  Y    WS    N  G +IF  AV  RQE +F++I+N+   +     + D+
Sbjct: 357 VEYIEEMMRHYPDIVWS---KNSSGLNIFFYAVSQRQEKIFSLIYNIGAKKNILATNWDI 413

Query: 154 KGVNILHSAARSVPSSEVS---GAALQMQRELQWFKLNDK--------------DKTPRE 196
              N+LH AA   P+S ++   GAALQMQRELQWFK  +K               KTP+ 
Sbjct: 414 FHNNMLHHAAYRAPASRLNLIPGAALQMQRELQWFKEVEKLVQPKHRKMVNLKQKKTPKA 473

Query: 197 LFTEEHKGLVKEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDSRGMPNYLHEPSF 256
           LFT++HK LV++GEKWMK+TA SC++VA L+ T+ F++A TVPG   S GMP Y+H+  F
Sbjct: 474 LFTDQHKDLVEQGEKWMKETATSCTVVAALITTMMFSSAFTVPGGYRSDGMPLYIHQHRF 533

Query: 257 TIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
            IF IS+A++LF+S +S+LMFLGIL SR+ EEDFL SLP KLI+GL+ LF S+A+++
Sbjct: 534 KIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMI 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131182|ref|XP_002328475.1| predicted protein [Populus trichocarpa] gi|222838190|gb|EEE76555.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/288 (45%), Positives = 182/288 (63%), Gaps = 19/288 (6%)

Query: 43  PSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEI 102
           P+IK + N KL H Q L +L  +C   +     ++  E  + K +F A K GI E ++EI
Sbjct: 192 PAIKKMYNLKLIHGQALAVLCCLC-EQISTLHRSEFKEIGVYKAVFNAVKHGIVEFIVEI 250

Query: 103 IISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA 162
           +  ++P  + F ++    IF  A   RQE +F++++ M   +       D    NILH A
Sbjct: 251 V-RHYPDVIWFEDDLNRGIFLYATLQRQEKIFSLLYKMGAKKNSMATPWDKYHNNILHQA 309

Query: 163 ARSVPSSE---VSGAALQMQRELQWFK-------------LNDKDKTPRELFTEEHKGLV 206
           A   PSS+   VSGAALQMQRELQW+K             +N   +TP+ LFTE+H+ LV
Sbjct: 310 AFLAPSSQLDRVSGAALQMQRELQWYKEVESIVQPKYREMVNFNHRTPQALFTEQHRKLV 369

Query: 207 KEGEKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDS-RGMPNYLHEPSFTIFGISNAL 265
           +EGEKWMKDT++SC++VA L+ TI F+A  TVPG  D   G+P YLH  SF +F +S+A+
Sbjct: 370 EEGEKWMKDTSESCTVVAALISTIMFSAIFTVPGGYDQFSGIPIYLHGNSFMVFMVSDAM 429

Query: 266 ALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           +LF+S  S+LMFLGILTSR+ EEDFL SLP K+I+GL  LFFSIA++M
Sbjct: 430 SLFASTSSLLMFLGILTSRYREEDFLKSLPTKMIVGLSCLFFSIATMM 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.456	0.228	0.449	4.3e-31
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.463	0.216	0.475	9.5e-31
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.463	0.240	0.459	1.3e-27
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.402	0.363	0.424	2.9e-23
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.402	0.219	0.413	1.9e-22
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.412	0.212	0.222	0.00093

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
 Identities = 71/158 (44%), Positives = 95/158 (60%)

Query:   171 VSGAALQMQRELQWFK-------------LNDKDKTPRELFTEEHKGLVKEGEKWMKDTA 217
             V  A LQMQRELQWFK             +N ++ TP E+F +EH+ +  E EKWMKDTA
Sbjct:   408 VVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTA 467

Query:   218 QSCSLXXXXXXXXXXXXXXXXPG--DSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVL 275
              SCSL                PG  D +S G P + HE  F IF +S+ ++ F++  SVL
Sbjct:   468 MSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVL 527

Query:   276 MFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
             +FLGILT+R++ +DFL SLP  +I GL TLF SIA+++
Sbjct:   528 IFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAML 565

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 9.5e-31, P = 9.5e-31
 Identities = 76/160 (47%), Positives = 102/160 (63%)

Query:   169 SEVSGAALQMQRELQWFK-------------LNDKDKTPRELFTEEHKGLVKEGEKWMKD 215
             S V GA LQ+QRELQWFK             +N +++TP E+FT+EH+GL +E EKWMKD
Sbjct:   448 SSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKD 507

Query:   216 TAQSCSLXXXXXXXXXXXXXXXXPG--DSDSRGMPNYLHEPSFTIFGISNALALFSSVVS 273
             TA SCSL                PG  D +S+G P +L +  F IF +S+ ++ F+S  S
Sbjct:   508 TAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTS 567

Query:   274 VLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
             VL+FLGILT+R+S +DFLV LP K+I GL  LF SIA+++
Sbjct:   568 VLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAML 607

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 73/159 (45%), Positives = 97/159 (61%)

Query:   169 SEVSGAALQMQRELQWFK------------LNDKD-KTPRELFTEEHKGLVKEGEKWMKD 215
             S++SGAAL+MQRE QWFK              +KD KTPR++F   H+ L KEGE+WMK 
Sbjct:   383 SKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKY 442

Query:   216 TAQSCSLXXXXXXXXXXXXXXXXPGDSD-SRGMPNYLHEPSFTIFGISNALALFSSVVSV 274
             TA +CS                 PG  D + G P  L++  F  F  ++ LA F+S +SV
Sbjct:   443 TATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISV 502

Query:   275 LMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
             L+FL ILTSR+S +DF+VSLPRK+I+G   LF SIAS++
Sbjct:   503 LIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASML 541

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 56/132 (42%), Positives = 80/132 (60%)

Query:   188 NDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLXXXXXXXXXXXXXXXXPGDSDSRG- 246
             N K++   +LFT+EH  L KEGEKWMK+TA +C L                PG +D+ G 
Sbjct:   152 NKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGD 211

Query:   247 -----MPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIG 301
                   P +  E  F +F IS+++AL SSV S+++FL ILTSR++E  F  +LP KL++G
Sbjct:   212 IKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLG 271

Query:   302 LITLFFSIASLM 313
             L+ LF SI S++
Sbjct:   272 LLALFVSIISMV 283

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 55/133 (41%), Positives = 79/133 (59%)

Query:   188 NDKDKTPRELFTEEHKGLVKEGEKWMKDTAQSCSLXXXXXXXXXXXXXXXXPGDSDSRG- 246
             N K +   ++FTE+H+ L KEGE+WMK+TA +C L                PG +D  G 
Sbjct:   376 NTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGD 435

Query:   247 ------MPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLII 300
                    PN+     F IF +S+++ALFSS++S+++FL I TSR++EEDF   LP KL+ 
Sbjct:   436 KANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMF 495

Query:   301 GLITLFFSIASLM 313
             GL  LF SI S++
Sbjct:   496 GLSALFISIISMI 508

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00093, Sum P(2) = 0.00093
 Identities = 30/135 (22%), Positives = 60/135 (44%)

Query:   167 PSSEVSGAALQMQRELQWFKLNDKDKTPREL--FTEEHKGLVKEGEKWMKDTAQSCSLXX 224
             P  E+     ++++++   +L    KT + +    +E + L + G   + +   S ++  
Sbjct:   385 PRDELRKTVTEIKKDVHT-QLEQTRKTNKNVDGIAKELRKLHRAG---INNATNSVTVVA 440

Query:   225 XXXXXXXXXXXXXXPGDSDSRGMPNYLHEPSFTIFGISNALALFSSVVSVLMFLGILTSR 284
                           PG  D  G+   +H  SF IF I NA+ALF+S+  V++ + ++   
Sbjct:   441 VLFATVAFAAIFTVPGGDDDHGVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITLVRGE 500

Query:   285 FSEEDFLVSLPRKLI 299
                E  +V +  KL+
Sbjct:   501 TKTERRVVEVINKLM 515

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00151039 hypothetical protein (743 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-24

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 95.7 bits (239), Expect = 1e-24
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 210 EKWMKDTAQSCSLVATLVITIAFAAAITVPG------DSDSRGMPNYLHEPS-FTIFGIS 262
            +W++ T  S  +VATL+ T+ FAA  T PG           G P    +P  F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 263 NALALFSSVVSVLMFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIASLM 313
           N +A  +S+V+V++ L I+        F   LPR L+  L  L+ S+ SLM
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLM 104

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.89
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.87
PF13962	113	PGG: Domain of unknown function	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.83
PHA02946	446	ankyin-like protein; Provisional	99.83
PHA02874	434	ankyrin repeat protein; Provisional	99.83
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.82
PHA02859	209	ankyrin repeat protein; Provisional	99.82
PHA03100	480	ankyrin repeat protein; Provisional	99.81
PHA02874	434	ankyrin repeat protein; Provisional	99.81
PHA02878	477	ankyrin repeat protein; Provisional	99.81
KOG0510	929	consensus Ankyrin repeat protein [General function	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02791	284	ankyrin-like protein; Provisional	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.79
KOG0510	929	consensus Ankyrin repeat protein [General function	99.78
PHA03095	471	ankyrin-like protein; Provisional	99.78
PHA02878	477	ankyrin repeat protein; Provisional	99.78
PHA02876	682	ankyrin repeat protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02798	489	ankyrin-like protein; Provisional	99.76
KOG0508	615	consensus Ankyrin repeat protein [General function	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA02876	682	ankyrin repeat protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PHA03100	480	ankyrin repeat protein; Provisional	99.75
PHA02741	169	hypothetical protein; Provisional	99.75
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.75
PHA03095	471	ankyrin-like protein; Provisional	99.74
PHA02859	209	ankyrin repeat protein; Provisional	99.71
PHA02946	446	ankyin-like protein; Provisional	99.71
PHA02743	166	Viral ankyrin protein; Provisional	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.7
PHA02989	494	ankyrin repeat protein; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.68
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.67
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.67
PHA02743	166	Viral ankyrin protein; Provisional	99.66
PHA02798	489	ankyrin-like protein; Provisional	99.66
PHA02884	300	ankyrin repeat protein; Provisional	99.65
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.65
PHA02795	437	ankyrin-like protein; Provisional	99.64
PHA02736	154	Viral ankyrin protein; Provisional	99.64
PHA02917	661	ankyrin-like protein; Provisional	99.63
PHA02917	661	ankyrin-like protein; Provisional	99.62
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.61
PHA02884	300	ankyrin repeat protein; Provisional	99.6
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.6
PHA02795	437	ankyrin-like protein; Provisional	99.58
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.58
KOG0508	615	consensus Ankyrin repeat protein [General function	99.57
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.54
PHA02730	672	ankyrin-like protein; Provisional	99.52
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.48
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.46
KOG0514	452	consensus Ankyrin repeat protein [General function	99.45
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.43
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.43
PHA02730	672	ankyrin-like protein; Provisional	99.41
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.41
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.4
PHA02792	631	ankyrin-like protein; Provisional	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.26
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
PHA02792	631	ankyrin-like protein; Provisional	99.24
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.24
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.21
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.21
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.19
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.96
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.82
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.65
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.59
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.5
PF13606	30	Ank_3: Ankyrin repeat	98.48
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.48
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.4
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.27
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.14
KOG0522	560	consensus Ankyrin repeat protein [General function	98.07
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.05
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.04
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.76
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.74
KOG0511	516	consensus Ankyrin repeat protein [General function	97.67
KOG2384	223	consensus Major histocompatibility complex protein	97.45
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.4
KOG2384	223	consensus Major histocompatibility complex protein	97.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.88
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.23
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.19
KOG2505	591	consensus Ankyrin repeat protein [General function	96.04
KOG0511	516	consensus Ankyrin repeat protein [General function	94.78
KOG2505	591	consensus Ankyrin repeat protein [General function	94.49
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.55

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.2e-26  Score=185.89  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=114.2

Q ss_pred             CCCCCC-CCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCc
Q 041572            7 LHSENA-DGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKK   85 (313)
Q Consensus         7 ~~~~n~-~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~t   85 (313)
                      +-.+|+ ||.||||-|+..|....                                +.+|++......++   +|..|||
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~ei--------------------------------v~fLlsq~nv~~dd---kDdaGWt   74 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEI--------------------------------VYFLLSQPNVKPDD---KDDAGWT   74 (226)
T ss_pred             hhccccccCCceeeeeeecCchhH--------------------------------HHHHHhcCCCCCCC---ccccCCc
Confidence            455666 99999999997766544                                55555431122222   5788999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |||+||..|+.|+|+.|+.+ .+.++|..+..|+|+||+|+-.|+.+|+++|++.|    +.++.+|..|.||||-|+..
T Consensus        75 Plhia~s~g~~evVk~Ll~r-~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g----a~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNR-SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG----ALIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcC-CCCCcceecCCCcceehhhhcCChhhHHHHHHhcC----CCCcccccccCchhHHHHhc
Confidence            99999999999999999888 67788888889999999999999999999999888    68888999999999999888


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELF  198 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla  198 (313)
                      |..+ +...++.....+.|.  |+.|.||++.|
T Consensus       150 Gklk-vie~Li~~~a~~n~q--Dk~G~TpL~~a  179 (226)
T KOG4412|consen  150 GKLK-VIEYLISQGAPLNTQ--DKYGFTPLHHA  179 (226)
T ss_pred             cchh-hHHHHHhcCCCCCcc--cccCccHHHHH
Confidence            8873 333444444455555  88899998888

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.7e-23  Score=168.91  Aligned_cols=149  Identities=14%  Similarity=0.107  Sum_probs=120.2

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHH
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      -.+++.|+||||+|+..|..                                ++++.|+.+..   .+.+..++.|.|||
T Consensus        66 ddkDdaGWtPlhia~s~g~~--------------------------------evVk~Ll~r~~---advna~tn~G~T~L  110 (226)
T KOG4412|consen   66 DDKDDAGWTPLHIAASNGND--------------------------------EVVKELLNRSG---ADVNATTNGGQTCL  110 (226)
T ss_pred             CCccccCCchhhhhhhcCcH--------------------------------HHHHHHhcCCC---CCcceecCCCccee
Confidence            34589999999999866533                                44888887721   23345788999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCC
Q 041572           88 FTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVP  167 (313)
Q Consensus        88 h~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  167 (313)
                      |+||.+|..|+++.|++.  ++.++.+|..|+||||-|+.-|+.+++++|+..+    +.+|.+|+.|+||||.|...|+
T Consensus       111 HyAagK~r~eIaqlLle~--ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~----a~~n~qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  111 HYAAGKGRLEIAQLLLEK--GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG----APLNTQDKYGFTPLHHALAEGH  184 (226)
T ss_pred             hhhhcCChhhHHHHHHhc--CCCCcccccccCchhHHHHhccchhhHHHHHhcC----CCCCcccccCccHHHHHHhccC
Confidence            999999999999999999  8999999999999999999999999999999998    7899999999999999977777


Q ss_pred             CCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          168 SSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       168 ~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      . .+...++...  ......|++| ||+.++...
T Consensus       185 ~-d~a~lLV~~g--Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  185 P-DVAVLLVRAG--ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             c-hHHHHHHHhc--cceeeccccC-chHHHHHHH
Confidence            6 3322222222  2333348888 998887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.87  E-value=5e-21  Score=181.68  Aligned_cols=139  Identities=17%  Similarity=0.151  Sum_probs=76.3

Q ss_pred             hhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHH
Q 041572           50 NTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAA  125 (313)
Q Consensus        50 ~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A  125 (313)
                      +.++.|+++.    .++..|+++|    .++..+|.+|.+|||+||+.|+.-+|-+||.+  +.+++.+|.+|+||||+|
T Consensus       112 ~stPLHWAar~G~~~vv~lLlqhG----Adpt~~D~~G~~~lHla~~~~~~~~vayll~~--~~d~d~~D~~grTpLmwA  185 (600)
T KOG0509|consen  112 GSTPLHWAARNGHISVVDLLLQHG----ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK--GADIDLRDNNGRTPLMWA  185 (600)
T ss_pred             CCCcchHHHHcCcHHHHHHHHHcC----CCCceecCCCCcHHHHHHHhCchHHHHHHHHh--cccCCCcCCCCCCHHHHH
Confidence            3444455443    4555555553    23334555555555555555555555555555  355555555555555555


Q ss_pred             HHcCCHHHHHHHHcCCccccccccccc-CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          126 VKHRQENVFNIIFNMPKAQTFFVADID-VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       126 ~~~g~~~iv~~Ll~~~~~~~~~in~~d-~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      +.+|....++.|++.+    +.++.+| ++|+||||+|+..|+...+. ..++-+...+.  .|.+|+||+++|.++
T Consensus       186 aykg~~~~v~~LL~f~----a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~--~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  186 AYKGFALFVRRLLKFG----ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDK--TNTNGKTPFDLAQER  255 (600)
T ss_pred             HHhcccHHHHHHHHhc----ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccc--cccCCCCHHHHHHHh
Confidence            5555555555555555    3444444 56666666666666553333 22222222222  277899999999776

>PF13962 PGG: Domain of unknown function

Probab=99.85  E-value=5.4e-21  Score=149.41  Aligned_cols=97  Identities=37%  Similarity=0.635  Sum_probs=80.2

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHhhccCCCCCCC----CCCccccCCc-chhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 041572          210 EKWMKDTAQSCSLVATLVITIAFAAAITVPGDSDS----RGMPNYLHEP-SFTIFGISNALALFSSVVSVLMFLGILTSR  284 (313)
Q Consensus       210 ~~~~~~~~~~~~vva~Liatvtfaa~~t~Pgg~~~----~G~~~l~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~  284 (313)
                      +||++++++++++||+|||||||+|++++|||++|    .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            47999999999999999999999999999999943    7999998888 999999999999999999998876422   


Q ss_pred             CcchhhHHHhHHHHHHHHHHHHHHHHhc
Q 041572          285 FSEEDFLVSLPRKLIIGLITLFFSIASL  312 (313)
Q Consensus       285 ~~~~~~~~~l~~~l~~~~~~~~~s~~~m  312 (313)
                         .++.+..+..+.++..++++++.+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~  102 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISM  102 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4445455555666666666666655

>PHA02791 ankyrin-like protein; Provisional

Probab=99.84  E-value=7.2e-21  Score=171.69  Aligned_cols=174  Identities=13%  Similarity=0.086  Sum_probs=119.7

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      .+|.+|.||||.|+..+....   ..+.+..+.....+  ...+..|.++.    ++++.|++. ..+.   +.+|..|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~ei---v~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~-Gadv---n~~d~~G~   95 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRL---VCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFS-GMDD---SQFDDKGN   95 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHH---HHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHC-CCCC---CCCCCCCC
Confidence            468899999999999887655   23333333222211  23455565553    788888877 3333   33778889


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCC-hHHHHHHHcCCHHHHHHHHcCCccccccccccc-CCCCCHHHHH
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGD-DIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-VKGVNILHSA  162 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~-t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-~~G~TpLH~A  162 (313)
                      ||||+|+..|+.++++.|++.  +..++.++..|+ ||||+|+..|+.+++++|++.+.      +..| ..|.||||+|
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~--gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~------~~~d~~~g~TpLh~A  167 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP------STFDLAILLSCIHIT  167 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC------cccccccCccHHHHH
Confidence            999999999999999999887  667777787774 88999999999999998888652      1123 2588999999


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCCh-hhhhhHhh
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTP-RELFTEEH  202 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp-~dla~~~~  202 (313)
                      ++.|+. .+...+++...+  ....|..|.|| +++|.+..
T Consensus       168 a~~g~~-eiv~lLL~~gAd--~n~~d~~g~t~~L~~Aa~~~  205 (284)
T PHA02791        168 IKNGHV-DMMILLLDYMTS--TNTNNSLLFIPDIKLAIDNK  205 (284)
T ss_pred             HHcCCH-HHHHHHHHCCCC--CCcccCCCCChHHHHHHHcC
Confidence            988887 344444443332  23336778876 88887654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=177.47  Aligned_cols=184  Identities=14%  Similarity=0.051  Sum_probs=135.1

Q ss_pred             CCCCCCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhh
Q 041572            2 GPHPHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAK   77 (313)
Q Consensus         2 ~~~~~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~   77 (313)
                      |..++  .++.+|.||||.|+..+....   ..++++.+..+..+.....+..|.++.    ++++.|++.+ ....  +
T Consensus        25 g~~~n--~~~~~g~tpL~~A~~~~~~~~---v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~-~~~~--~   96 (413)
T PHA02875         25 GINPN--FEIYDGISPIKLAMKFRDSEA---IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG-KFAD--D   96 (413)
T ss_pred             CCCCC--ccCCCCCCHHHHHHHcCCHHH---HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC-Cccc--c
Confidence            44444  456789999999998877655   333344444333322223344455443    7888888873 3222  2


Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      ..+.+|+||||+|+..|+.++++.|++.  +++++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|..|+|
T Consensus        97 ~~~~~g~tpL~~A~~~~~~~iv~~Ll~~--gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~T  170 (413)
T PHA02875         97 VFYKDGMTPLHLATILKKLDIMKLLIAR--GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK----ACLDIEDCCGCT  170 (413)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCC
Confidence            3566899999999999999999999998  8889999999999999999999999999999998    688999999999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCC-CChhhhhhHhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKD-KTPRELFTEEH  202 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G-~Tp~dla~~~~  202 (313)
                      |||+|+..|+. .+...+++...++...  +.+| .||+++|.+..
T Consensus       171 pL~~A~~~g~~-eiv~~Ll~~ga~~n~~--~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        171 PLIIAMAKGDI-AICKMLLDSGANIDYF--GKNGCVAALCYAIENN  213 (413)
T ss_pred             HHHHHHHcCCH-HHHHHHHhCCCCCCcC--CCCCCchHHHHHHHcC
Confidence            99999999987 3434444443333322  5555 57888777653

>PHA02946 ankyin-like protein; Provisional

Probab=99.83  E-value=2.7e-20  Score=178.63  Aligned_cols=180  Identities=11%  Similarity=0.085  Sum_probs=136.8

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH------HHHHHHHHhccccccchhhhhc
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT------LEILRIICVGAVDIATAAKETE   80 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~------~~il~~l~~~~~~~~~~~~~~d   80 (313)
                      +-.+|.+|.||||+|++.+....   ....++.+..+..++..+.+..|.++      .++++.|+++ ..+++.  ..|
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~ei---v~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~-Gadin~--~~d  138 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRI---VAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY-GAKINN--SVD  138 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHH---HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCccc--ccC
Confidence            34578999999999999987765   33444555444445555666666543      4788999998 344432  257


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC--HHHHHHHHcCCcccccccccccCCCCCH
Q 041572           81 NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ--ENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      .+|.|||| ||..|+.++++.|++.  +.+++.+|..|+||||+|+..++  .+++++|++.|    +++|.+|.+|+||
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~--gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G----adin~~d~~G~Tp  211 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSI--GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG----ISPSKPDHDGNTP  211 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhc--cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC----CCCcccCCCCCCH
Confidence            89999998 7778999999999998  88899999999999999988655  58999999998    7899999999999


Q ss_pred             HHHHHhcCCCC-CcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          159 LHSAARSVPSS-EVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       159 LH~Aa~~~~~~-~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ||+|+..+... .+...++   ........|++|.||+++|.+..
T Consensus       212 LH~Aa~~~~~~~~iv~lLl---~gadin~~d~~G~TpLh~A~~~~  253 (446)
T PHA02946        212 LHIVCSKTVKNVDIINLLL---PSTDVNKQNKFGDSPLTLLIKTL  253 (446)
T ss_pred             HHHHHHcCCCcHHHHHHHH---cCCCCCCCCCCCCCHHHHHHHhC
Confidence            99999987431 1212222   12345556999999999998863

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=178.94  Aligned_cols=180  Identities=12%  Similarity=0.034  Sum_probs=118.8

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhcccccc----------
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIA----------   73 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~----------   73 (313)
                      -..+++|.||||.|++.|.....   .++++.+..............|.++    .++++.|++++ ...          
T Consensus        29 n~~~~~~~tpL~~A~~~g~~~iv---~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~~~~  104 (434)
T PHA02874         29 NISVDETTTPLIDAIRSGDAKIV---ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNG-VDTSILPIPCIEK  104 (434)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHH---HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcchhccCCH
Confidence            35577888999999988877662   2233333332211112222223322    25666666552 111          


Q ss_pred             ----------chhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcc
Q 041572           74 ----------TAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKA  143 (313)
Q Consensus        74 ----------~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  143 (313)
                                .+.+.+|..|.||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+.+|+.+++++|++.+  
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g--  180 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY--GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG--  180 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--
Confidence                      11233678899999999999999999999988  7778888999999999999999999999999988  


Q ss_pred             cccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          144 QTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       144 ~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                        ++++.+|..|+||||+|+..|+. .+...+++...+  ....+.+|.||+++|..
T Consensus       181 --~~~n~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~g~~--i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        181 --AYANVKDNNGESPLHNAAEYGDY-ACIKLLIDHGNH--IMNKCKNGFTPLHNAII  232 (434)
T ss_pred             --CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHhCCCC--CcCCCCCCCCHHHHHHH
Confidence              67888899999999999998876 233333332221  11224455555555544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.82  E-value=2.8e-20  Score=176.57  Aligned_cols=144  Identities=15%  Similarity=0.076  Sum_probs=114.6

Q ss_pred             hhhhhccccHHHH----HHHHHHHhccccccchhhhhc-CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChH
Q 041572           47 SIRNTKLTHKQTL----EILRIICVGAVDIATAAKETE-NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDI  121 (313)
Q Consensus        47 ~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d-~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~  121 (313)
                      +-......||+|+    ++.++|+++ ...+|.   .+ .-+.|||||||++|+..+|+.|+++  +++++.+|.+|.||
T Consensus        75 D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~---~gG~l~stPLHWAar~G~~~vv~lLlqh--GAdpt~~D~~G~~~  148 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNRLDVARYLISH-GADVNA---IGGVLGSTPLHWAARNGHISVVDLLLQH--GADPTLKDKQGLTP  148 (600)
T ss_pred             CcCCccceeHHHHcCcHHHHHHHHHc-CCCccc---cCCCCCCCcchHHHHcCcHHHHHHHHHc--CCCCceecCCCCcH
Confidence            3345667898887    899999999 454443   33 4578999999999999999999998  99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          122 FHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       122 Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ||+||+.|+.-.+-+|+.++    +++|.+|.+|.||||+|+.+|+... ...++.....+.+ ..+++|.||||.|...
T Consensus       149 lHla~~~~~~~~vayll~~~----~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~-~d~~~g~TpLHwa~~~  222 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKG----ADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLL-TDDNHGNTPLHWAVVG  222 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhc----ccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhcccccc-cccccCCchHHHHHhc
Confidence            99999999999999999988    7899999999999999999998721 2223322222221 1258999999999875


Q ss_pred             h
Q 041572          202 H  202 (313)
Q Consensus       202 ~  202 (313)
                      .
T Consensus       223 g  223 (600)
T KOG0509|consen  223 G  223 (600)
T ss_pred             C
Confidence            3

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4e-20  Score=160.25  Aligned_cols=173  Identities=14%  Similarity=0.007  Sum_probs=125.4

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH------HHHHHHHHhccccccchhhhhc-CCC
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT------LEILRIICVGAVDIATAAKETE-NVL   83 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~------~~il~~l~~~~~~~~~~~~~~d-~~g   83 (313)
                      +..+.|||+.|++.+.....-......+      ..+....+..|..+      .++++.|+++ ..+++.   ++ ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n------~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~---~~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVN------DCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNF---KTRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhh------ccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCc---cCCCCC
Confidence            5677899999998887765222111111      11223344445442      4889999999 454433   54 479


Q ss_pred             CcHHHHHHHh---CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHH--cCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           84 KKPMFTAAKF---GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVK--HRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        84 ~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      +||||+|+..   |+.++++.|+++  +.+++.+|..|+||||+|+.  .++.+++++|++.+    +++|.+|.+|+||
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~--gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g----adin~~d~~g~t~  161 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDS--GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG----VSFLNKDFDNNNI  161 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC----CCcccccCCCCcH
Confidence            9999998864   579999999988  88999999999999999986  46899999999998    7899999999999


Q ss_pred             HHHH-HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          159 LHSA-ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       159 LH~A-a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ||.+ +..++. .+...+++...+  ....|..|+||+++|..++
T Consensus       162 Lh~~a~~~~~~-~iv~~Ll~~Gad--i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        162 LYSYILFHSDK-KIFDFLTSLGID--INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHhcCCH-HHHHHHHHcCCC--CCCCCCCCCCHHHHHhhhh
Confidence            9965 445554 333444443333  3344899999999997653

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.81  E-value=9.3e-20  Score=176.67  Aligned_cols=183  Identities=16%  Similarity=0.107  Sum_probs=135.3

Q ss_pred             CCCCCCCCCCCCCCccccccc--cCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH------HHHHHHHHhcccccc
Q 041572            2 GPHPHLHSENADGDLEKQLSE--TSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT------LEILRIICVGAVDIA   73 (313)
Q Consensus         2 ~~~~~~~~~n~~g~t~l~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~------~~il~~l~~~~~~~~   73 (313)
                      |+.+  -..+.+|.||||.|+  ..+....   ..+.++.+......+..+.+..|.++      .++++.|+++ ..++
T Consensus        96 ga~i--~~~d~~g~tpL~~A~~~~~~~~~i---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~di  169 (480)
T PHA03100         96 GANV--NAPDNNGITPLLYAISKKSNSYSI---VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDI  169 (480)
T ss_pred             CCCC--CCCCCCCCchhhHHHhcccChHHH---HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCc
Confidence            4443  456788899999988  6665554   33333444433333334444445443      5788888888 3443


Q ss_pred             chhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCC------ChHHHHHHHcCC--HHHHHHHHcCCcccc
Q 041572           74 TAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDG------DDIFHAAVKHRQ--ENVFNIIFNMPKAQT  145 (313)
Q Consensus        74 ~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G------~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~  145 (313)
                         +.+|..|.||||+|+..|+.++++.|++.  +..++..+..|      +||||.|+..|+  .+++++|++.|    
T Consensus       170 ---n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g----  240 (480)
T PHA03100        170 ---NAKNRYGYTPLHIAVEKGNIDVIKFLLDN--GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG----  240 (480)
T ss_pred             ---ccccCCCCCHHHHHHHhCCHHHHHHHHHc--CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC----
Confidence               33677899999999999999999999988  77788888888      899999999999  99999999988    


Q ss_pred             cccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          146 FFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       146 ~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +++|.+|..|.||||+|+..|+. .+...+++...+  ....|..|.||+++|.+..
T Consensus       241 ~din~~d~~g~TpL~~A~~~~~~-~iv~~Ll~~gad--~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        241 VPINIKDVYGFTPLHYAVYNNNP-EFVKYLLDLGAN--PNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC--CCccCCCCCcHHHHHHHhC
Confidence            78899999999999999999987 444445544433  3344899999999998754

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.81  E-value=9.4e-20  Score=174.76  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=127.2

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +..+|.+|.||||.|++.+....   ...++..+..+..++..+.+..|.++.    ++++.|++++ ...   +.+|..
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~---v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~---n~~~~~  189 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLES---IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYA---NVKDNN  189 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHH---HHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCC---CCCCCC
Confidence            34578899999999998876654   223334444444444455566666553    7888888883 333   346788


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |.||||+|+..|+.++++.|++.  +..++.++..|+||||.|+..++ +++++|+. +    +.+|.+|.+|+||||+|
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~--g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~----~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDH--GNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN-N----ASINDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc-C----CCCCCcCCCCCCHHHHH
Confidence            99999999999999999999988  77788888899999999998765 56666664 3    56888999999999999


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ++.+....+...+++...  .....|++|+||+++|.+.
T Consensus       262 ~~~~~~~~iv~~Ll~~ga--d~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        262 INPPCDIDIIDILLYHKA--DISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             HhcCCcHHHHHHHHHCcC--CCCCCCCCCCCHHHHHHHh
Confidence            987633233334443333  3334488999999999764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.8e-19  Score=174.86  Aligned_cols=126  Identities=12%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             HHHHHHHhccccccchhhhhcCC-CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENV-LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~-g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      ++++.|+++ ..++   +.+|.. |+||||+||..|+.++++.|++.  +++++.+|..|+||||+|+..|+.+++++|+
T Consensus       148 ~iv~~Ll~~-gadi---n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll  221 (477)
T PHA02878        148 EITKLLLSY-GADI---NMKDRHKGNTALHYATENKDQRLTELLLSY--GANVNIPDKTNNSPLHHAVKHYNKPIVHILL  221 (477)
T ss_pred             HHHHHHHHc-CCCC---CccCCCCCCCHHHHHHhCCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            588888888 3444   336677 99999999999999999999998  7889999999999999999999999999999


Q ss_pred             cCCcccccccccccCCCCCHHHHHHhc-CCCCCcchHHhhhhHHhhhhhhc-CCCCChhhhh
Q 041572          139 NMPKAQTFFVADIDVKGVNILHSAARS-VPSSEVSGAALQMQRELQWFKLN-DKDKTPRELF  198 (313)
Q Consensus       139 ~~~~~~~~~in~~d~~G~TpLH~Aa~~-~~~~~i~~~~l~~~~~l~~~~~n-~~G~Tp~dla  198 (313)
                      +.|    +++|.+|..|+||||+|+.. ++. .+...+++...++  ...+ ..|.||+++|
T Consensus       222 ~~g----a~in~~d~~g~TpLh~A~~~~~~~-~iv~~Ll~~gadv--n~~~~~~g~TpLh~A  276 (477)
T PHA02878        222 ENG----ASTDARDKCGNTPLHISVGYCKDY-DILKLLLEHGVDV--NAKSYILGLTALHSS  276 (477)
T ss_pred             HcC----CCCCCCCCCCCCHHHHHHHhcCCH-HHHHHHHHcCCCC--CccCCCCCCCHHHHH
Confidence            998    78999999999999999976 443 2333333322221  1112 2567777766

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=1e-19  Score=176.28  Aligned_cols=117  Identities=21%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc-CCcccccccccccCCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN-MPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~in~~d~~G~T  157 (313)
                      .|++|.||||+||++|+.+.++.|+..  +.+++.++.++.||||.||++|+.+.++.|++ .+   ..++|..|-.|+|
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~--Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~---~rllne~D~~g~t  343 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGF--GASINSKNKDEESPLHFAAIYGRINTVERLLQESD---TRLLNESDLHGMT  343 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHc--CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC---ccccccccccCCC
Confidence            577888999999999999999888888  88888888888999999999999998888888 33   3578888888999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhh-hhhcCCCCChhhhhhHh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQW-FKLNDKDKTPRELFTEE  201 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~-~~~n~~G~Tp~dla~~~  201 (313)
                      |||+|++.||. .+...+++..+.... -+.|.+|.||+|+|...
T Consensus       344 pLHlaa~~gH~-~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  344 PLHLAAKSGHD-RVVQLLLNKGALFLNMSEADSDGNTALHLAAKY  387 (929)
T ss_pred             chhhhhhcCHH-HHHHHHHhcChhhhcccccccCCchhhhHHHHh
Confidence            99998888887 555555554333221 13477888888888764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.1e-19  Score=146.97  Aligned_cols=143  Identities=17%  Similarity=0.073  Sum_probs=112.3

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ..++.|++. ..  +-.+.+|++|.||||.|+++||.++|+.|+..  +++.+.+...||||||-||..++.+++..|++
T Consensus        77 ~eV~~lL~e-~a--n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq  151 (228)
T KOG0512|consen   77 TEVQRLLSE-KA--NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ  151 (228)
T ss_pred             HHHHHHHHh-cc--ccccccccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhhcccchhHHHHHHh
Confidence            345555555 12  23455999999999999999999999999998  89999999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh--hhhhhhhhhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE--HKGLVKEGEKW  212 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~--~~~l~~~~~~~  212 (313)
                      .|    +++|++.+...||||+||...+. ......|.+.+.+..-..|+.+.||+++|...  ...+.+-.++.
T Consensus       152 hg----aDVnA~t~g~ltpLhlaa~~rn~-r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e~~  221 (228)
T KOG0512|consen  152 HG----ADVNAQTKGLLTPLHLAAGNRNS-RDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVEGC  221 (228)
T ss_pred             cc----CcccccccccchhhHHhhcccch-HHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHHHH
Confidence            99    89999999999999999988766 22223333344444444489999999999875  33444433333

>PHA02791 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.8e-19  Score=162.66  Aligned_cols=169  Identities=8%  Similarity=-0.042  Sum_probs=126.6

Q ss_pred             CCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCC-cH
Q 041572           12 ADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLK-KP   86 (313)
Q Consensus        12 ~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~-tp   86 (313)
                      .+|.||||.|+..+....   ..+.+..+.....++..+.+..|.++.    ++++.|+++ ..+++   .++..|+ ||
T Consensus        59 ~d~~TpLh~Aa~~g~~ei---V~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin---~~~~~g~~Tp  131 (284)
T PHA02791         59 LENEFPLHQAATLEDTKI---VKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLM---FYGKTGWKTS  131 (284)
T ss_pred             CCCCCHHHHHHHCCCHHH---HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcC---ccCCCCCcHH
Confidence            357899999999887655   233344554444445556667777665    899999998 44443   3666774 89


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH-HHHHHh
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI-LHSAAR  164 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp-LH~Aa~  164 (313)
                      ||+|+..|+.++++.|++. .+...   | ..|+||||+|+.+|+.+++++|++.|    +++|.+|..|.|| ||+|+.
T Consensus       132 L~~Aa~~g~~eivk~LL~~-~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~g----Ad~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        132 FYHAVMLNDVSIVSYFLSE-IPSTF---DLAILLSCIHITIKNGHVDMMILLLDYM----TSTNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             HHHHHHcCCHHHHHHHHhc-CCccc---ccccCccHHHHHHHcCCHHHHHHHHHCC----CCCCcccCCCCChHHHHHHH
Confidence            9999999999999999998 55432   3 35899999999999999999999998    7899999999987 999999


Q ss_pred             cCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhh
Q 041572          165 SVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFT  199 (313)
Q Consensus       165 ~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~  199 (313)
                      .|+. .+...++...  ...+..|.+| ||++.+.
T Consensus       204 ~~~~-e~v~lLl~~G--a~in~~~~~~-~~l~~~e  234 (284)
T PHA02791        204 NKDL-EMLQALFKYD--INIYSVNLEN-VLLDDAE  234 (284)
T ss_pred             cCCH-HHHHHHHHCC--CCCccCcccC-ccCCCHH
Confidence            9987 3334444433  3344457744 8887664

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.7e-19  Score=170.33  Aligned_cols=174  Identities=10%  Similarity=-0.054  Sum_probs=134.7

Q ss_pred             CCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHHHH
Q 041572           14 GDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPMFT   89 (313)
Q Consensus        14 g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpLh~   89 (313)
                      ++++|+.|++.|....   .-.+++.+..+..+...+.+..|.++.    ++++.|++++ ..   .+.++.++.||||.
T Consensus         2 ~~~~L~~A~~~g~~~i---v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~---~~~~~~~~~t~L~~   74 (413)
T PHA02875          2 DQVALCDAILFGELDI---ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG-AI---PDVKYPDIESELHD   74 (413)
T ss_pred             CchHHHHHHHhCCHHH---HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CC---ccccCCCcccHHHH
Confidence            5789999999887765   334445565555555455666676654    8999999984 32   23466789999999


Q ss_pred             HHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCC
Q 041572           90 AAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSS  169 (313)
Q Consensus        90 Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  169 (313)
                      |+..|+.++++.|++. .....+..+.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|.||||+|+..|+. 
T Consensus        75 A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g----ad~~~~~~~g~tpLh~A~~~~~~-  148 (413)
T PHA02875         75 AVEEGDVKAVEELLDL-GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG----ADPDIPNTDKFSPLHLAVMMGDI-  148 (413)
T ss_pred             HHHCCCHHHHHHHHHc-CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHcCCH-
Confidence            9999999999999998 55445566788999999999999999999999998    78899999999999999999987 


Q ss_pred             CcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          170 EVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       170 ~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .+...+++....  ....|..|.||+++|...+
T Consensus       149 ~~v~~Ll~~g~~--~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        149 KGIELLIDHKAC--LDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             HHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcC
Confidence            333344433322  2333889999999998754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=1.4e-19  Score=175.38  Aligned_cols=146  Identities=17%  Similarity=0.151  Sum_probs=116.6

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      -+|++|-||||+|++.|...+                                ++.|+..| ..   .+.+++++.||||
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~s--------------------------------vd~Ll~~G-a~---I~~kn~d~~spLH  311 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPES--------------------------------VDNLLGFG-AS---INSKNKDEESPLH  311 (929)
T ss_pred             cccccCCchHHHHHHcCChhH--------------------------------HHHHHHcC-Cc---ccccCCCCCCchH
Confidence            468899999999998877766                                77777773 33   3457899999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccc---cccCCCCCHHHHHHhc
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVA---DIDVKGVNILHSAARS  165 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in---~~d~~G~TpLH~Aa~~  165 (313)
                      .||+.|+.+.|+.||+...-...+..|..|+||||+|+..||.+++++|+++|+    +.+   ..|.+|+||||+|+..
T Consensus       312 ~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA----~~~~~~e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  312 FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA----LFLNMSEADSDGNTALHLAAKY  387 (929)
T ss_pred             HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcCh----hhhcccccccCCchhhhHHHHh
Confidence            999999999999999941455678889999999999999999999999999994    333   4599999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPREL  197 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dl  197 (313)
                      |+. .....++....++...  |++|++++|+
T Consensus       388 g~~-~av~~Li~~Ga~I~~~--n~~g~SA~~~  416 (929)
T KOG0510|consen  388 GNT-SAVQKLISHGADIGVK--NKKGKSAFDT  416 (929)
T ss_pred             ccH-HHHHHHHHcCCceeec--cccccccccc
Confidence            998 3333444444444333  8888888774

>PHA03095 ankyrin-like protein; Provisional

Probab=99.78  E-value=7.6e-19  Score=169.84  Aligned_cols=130  Identities=14%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHh--CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCH--HHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKF--GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQE--NVFN  135 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~--G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~--~iv~  135 (313)
                      ++++.|+++ ..+...   .|..|+||||+|+..  ++.++++.|++.  +.+++.+|..|+||||+|+..|+.  .+++
T Consensus       168 ~iv~~Ll~~-g~~~~~---~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~--g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~  241 (471)
T PHA03095        168 ELLRLLIDA-GADVYA---VDDRFRSLLHHHLQSFKPRARIVRELIRA--GCDPAATDMLGNTPLHSMATGSSCKRSLVL  241 (471)
T ss_pred             HHHHHHHHc-CCCCcc---cCCCCCCHHHHHHHHCCCcHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcCCchHHHHH
Confidence            555666655 222222   356677777777654  667777777776  667777777788888888777764  4666


Q ss_pred             HHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          136 IIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       136 ~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .|++.+    +++|.+|.+|+||||+|+..|+. .+...+++...+  ....|.+|+||+++|....
T Consensus       242 ~ll~~g----~din~~d~~g~TpLh~A~~~~~~-~~v~~LL~~gad--~n~~~~~g~tpl~~A~~~~  301 (471)
T PHA03095        242 PLLIAG----ISINARNRYGQTPLHYAAVFNNP-RACRRLIALGAD--INAVSSDGNTPLSLMVRNN  301 (471)
T ss_pred             HHHHcC----CCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC--CcccCCCCCCHHHHHHHhC
Confidence            777766    67788888888888888888776 333344443333  2334788888888887653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.78  E-value=5.5e-19  Score=171.40  Aligned_cols=127  Identities=15%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHc-CCHHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKH-RQENVFNIIF  138 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~-g~~~iv~~Ll  138 (313)
                      ++++.|++++ .+.   +.+|..|.||||.|++.|+.++++.|++.  +.+++.+|..|+||||+|+.. ++.+++++|+
T Consensus       182 ~iv~~Ll~~g-ad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~--ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll  255 (477)
T PHA02878        182 RLTELLLSYG-ANV---NIPDKTNNSPLHHAVKHYNKPIVHILLEN--GASTDARDKCGNTPLHISVGYCKDYDILKLLL  255 (477)
T ss_pred             HHHHHHHHCC-CCC---CCcCCCCCCHHHHHHHhCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Confidence            4588888883 433   34788999999999999999999999988  888999999999999999975 7899999999


Q ss_pred             cCCcccccccccccC-CCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          139 NMPKAQTFFVADIDV-KGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       139 ~~~~~~~~~in~~d~-~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      +.|    +++|.++. .|.||||+|+  ++. .+...+++...+  ....|.+|.||+++|.++
T Consensus       256 ~~g----advn~~~~~~g~TpLh~A~--~~~-~~v~~Ll~~gad--in~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        256 EHG----VDVNAKSYILGLTALHSSI--KSE-RKLKLLLEYGAD--INSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HcC----CCCCccCCCCCCCHHHHHc--cCH-HHHHHHHHCCCC--CCCcCCCCCCHHHHHHHH
Confidence            998    78888886 7999999994  332 233344443333  334489999999999764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=176.02  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=72.6

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC-HHHHHHHHcCCcccccccccccCCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ-ENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      +|..|+||||+|+.+|+.++++.|++.  +.+++..+..|+||||+|+..++ ..++++|++.|    +++|.+|.+|+|
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~--gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g----adin~~d~~G~T  444 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDY--GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG----ANVNSKNKDLST  444 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC----CCCCcCCCCCCh
Confidence            566677777777777777777777766  55666666667777777765544 34566666666    567777777888


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |||+|+..+....+...+++...+  ....|..|.||+++|.+.
T Consensus       445 pLh~Aa~~~~~~~iv~lLl~~Gad--~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        445 PLHYACKKNCKLDVIEMLLDNGAD--VNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHh
Confidence            888877765321233333333222  233377788888877653

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=1.9e-18  Score=144.88  Aligned_cols=119  Identities=15%  Similarity=0.222  Sum_probs=95.7

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhh----CCCCcccccCCCChHHHHHHHcCC----HHHHHHHHcCCccccccccc
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISY----FPWSLSFSNEDGDDIFHAAVKHRQ----ENVFNIIFNMPKAQTFFVAD  150 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~----~~~~~~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~in~  150 (313)
                      +|..|.||||+||+.|+.++++.|+...    .+..++.+|..|+||||+|+..|+    .+++++|++.+    +++|.
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g----adin~   92 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG----ADINA   92 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC----CCCCC
Confidence            6778999999999999999999986530    246788999999999999999999    58899999988    78899


Q ss_pred             ccC-CCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          151 IDV-KGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       151 ~d~-~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      +|. +|+||||+|+..++. .+...++.. ........|.+|+||+++|.....
T Consensus        93 ~~~~~g~TpLh~A~~~~~~-~iv~~Ll~~-~g~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDH-DLAEWLCCQ-PGIDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCH-HHHHHHHhC-CCCCCCcCCCCCCCHHHHHHHCCC
Confidence            985 999999999999987 333333321 122334448999999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.76  E-value=2.8e-18  Score=167.00  Aligned_cols=187  Identities=11%  Similarity=0.010  Sum_probs=130.1

Q ss_pred             CCCCCCCCCccccccccC--CCcchhhhhhhccCCCCCchhHhhhhhccccHHH-------HHHHHHHHhccccccchhh
Q 041572            7 LHSENADGDLEKQLSETS--PFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT-------LEILRIICVGAVDIATAAK   77 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~-------~~il~~l~~~~~~~~~~~~   77 (313)
                      +-..+.+|.||||.++..  .+.....+..+.++.+.....++..+.+..|.++       .++++.|+++| .+.   +
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-adv---n  139 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG-ADT---T  139 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-CCc---c
Confidence            335678899999987653  1111123345555666555555555566666553       47888888883 333   4


Q ss_pred             hhcCCCCcHHHHHHHhCc---HHHHHHHHHhhCCCCccccc-CCCChHHHHHHHc----CCHHHHHHHHcCCccc-----
Q 041572           78 ETENVLKKPMFTAAKFGI---YEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKH----RQENVFNIIFNMPKAQ-----  144 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~---~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~----g~~~iv~~Ll~~~~~~-----  144 (313)
                      .+|.+|.||||+|++.|+   .++++.|++.  +.+++.++ ..|.||||.++..    ++.+++++|++.|...     
T Consensus       140 ~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~--gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        140 LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK--GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             ccCCCCCcHHHHHHHcCCcchHHHHHHHHHh--CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            477888999999998887   8899998888  77777764 5788899988764    4788888888776311     


Q ss_pred             ------------------------------ccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCCh
Q 041572          145 ------------------------------TFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTP  194 (313)
Q Consensus       145 ------------------------------~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp  194 (313)
                                                    .+++|.+|..|+||||+|+..|+. .+...+++...++  ...|..|+||
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~-~~v~~LL~~GAdi--n~~d~~G~Tp  294 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR-KIFEYLLQLGGDI--NIITELGNTC  294 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH-HHHHHHHHcCCcc--cccCCCCCcH
Confidence                                          125678889999999999999887 4444555544443  3348899999


Q ss_pred             hhhhhHhh
Q 041572          195 RELFTEEH  202 (313)
Q Consensus       195 ~dla~~~~  202 (313)
                      +++|.+.+
T Consensus       295 L~~A~~~~  302 (489)
T PHA02798        295 LFTAFENE  302 (489)
T ss_pred             HHHHHHcC
Confidence            99998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=5.9e-19  Score=161.98  Aligned_cols=177  Identities=16%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCC-----CCch---hHhhhhhccccHHH-----HHHHHHHHhccccccc
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPY-----YPPS---IKSIRNTKLTHKQT-----LEILRIICVGAVDIAT   74 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~-----~~~~---~~~~~~~k~~~~~~-----~~il~~l~~~~~~~~~   74 (313)
                      ..+..+|-|||-+|++.|....   ..+.++.+     ....   -.+..+....-|.+     +++++.|+++ ..+++
T Consensus        36 ~~~~~~g~tPL~iaaRnGH~~v---VeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN  111 (615)
T KOG0508|consen   36 IGEVQNGGTPLLIAARNGHADV---VEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVN  111 (615)
T ss_pred             hccccCCCCceeeehhcCcHHH---HHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCccc
Confidence            4567789999999999999876   22222211     1100   11222222223333     3899999999 45555


Q ss_pred             hhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCC
Q 041572           75 AAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVK  154 (313)
Q Consensus        75 ~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~  154 (313)
                      .   ......|||--||..|+.++|++|+++  +++++..|+.|+|.||+||..||.+|+++|++.|    +++|.++..
T Consensus       112 ~---tT~TNStPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g----ADvn~ks~k  182 (615)
T KOG0508|consen  112 D---TTRTNSTPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG----ADVNAKSYK  182 (615)
T ss_pred             c---ccccCCccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEeeeccCchHHHHHHHHhC----CCcchhccc
Confidence            4   445667999999999999999999988  8999999999999999999999999999999999    899999999


Q ss_pred             CCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          155 GVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       155 G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |||+||.++..|+.+ +...++.....+   ..|..|.||+-.|...
T Consensus       183 GNTALH~caEsG~vd-ivq~Ll~~ga~i---~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  183 GNTALHDCAESGSVD-IVQLLLKHGAKI---DVDGHGMTPLLLAAVT  225 (615)
T ss_pred             CchHHHhhhhcccHH-HHHHHHhCCcee---eecCCCCchHHHHhhh
Confidence            999999999999983 333333221111   1277799999888763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=2.1e-18  Score=172.20  Aligned_cols=177  Identities=12%  Similarity=0.064  Sum_probs=128.5

Q ss_pred             CCCC-CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH------HHHHHHHhccccccchhhhh
Q 041572            7 LHSE-NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL------EILRIICVGAVDIATAAKET   79 (313)
Q Consensus         7 ~~~~-n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~------~il~~l~~~~~~~~~~~~~~   79 (313)
                      +-.+ |+.|.||||.++...+.. ..+..++++.+.....++..+.+..|.++.      ++++.|+++| .+.   +.+
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~-~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G-ADV---N~k  243 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVD-IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELG-GDM---DMK  243 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCC---CCC
Confidence            3445 788999999876443322 122344556665555555666777777653      6899999994 444   447


Q ss_pred             cCCCCcHHHHH-------------------------------------HHhCcHHHHHHHHHhhCCCCcccccCCCChHH
Q 041572           80 ENVLKKPMFTA-------------------------------------AKFGIYEIVMEIIISYFPWSLSFSNEDGDDIF  122 (313)
Q Consensus        80 d~~g~tpLh~A-------------------------------------a~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~L  122 (313)
                      |..|+||||.|                                     |+.|+.++++.|++.  +..++.+|..|+|||
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~--GAdIN~kD~~G~TPL  321 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP--GVKLHYKDSAGRTCL  321 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC--CCceeccCCCCCCHH
Confidence            88999999965                                     456888999999988  788999999999999


Q ss_pred             HHHHH--cCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc--------------CCCCCcchHHhhhhHHhhhhh
Q 041572          123 HAAVK--HRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS--------------VPSSEVSGAALQMQRELQWFK  186 (313)
Q Consensus       123 h~A~~--~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~--------------~~~~~i~~~~l~~~~~l~~~~  186 (313)
                      |+|+.  +++.+++++|++.|    +++|.+|..|+||||+|+..              ++. .+...+++..  .....
T Consensus       322 H~Aaa~~~~~~eIVklLLe~G----ADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~-eVVklLL~~G--ADIn~  394 (764)
T PHA02716        322 HQYILRHNISTDIIKLLHEYG----NDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRL-DVIQCLISLG--ADITA  394 (764)
T ss_pred             HHHHHHhCCCchHHHHHHHcC----CCCccCCCCCCCHHHHHHHhhhhhccccccccccChH-HHHHHHHHCC--CCCCC
Confidence            99875  46889999999998    78999999999999998753              121 1222333322  23334


Q ss_pred             hcCCCCChhhh
Q 041572          187 LNDKDKTPREL  197 (313)
Q Consensus       187 ~n~~G~Tp~dl  197 (313)
                      .|+.|.||++.
T Consensus       395 kn~~G~TPLh~  405 (764)
T PHA02716        395 VNCLGYTPLTS  405 (764)
T ss_pred             cCCCCCChHHH
Confidence            48999999994

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.75  E-value=3e-18  Score=173.19  Aligned_cols=182  Identities=12%  Similarity=0.036  Sum_probs=135.9

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH-----HHHHHHHhccccccchhhhhcC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL-----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~-----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      +-..+..|.||||.|++.+....  +....+..+..+..++..+.+..|.++.     ++++.|++. ..+.   +.+|.
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~--iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadi---n~~d~  339 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSR--LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADV---NAADR  339 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHH--HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCC---CCccc
Confidence            34567789999999998876422  1233334444444444555666666553     678888888 3433   44788


Q ss_pred             CCCcHHHHHHHh-CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHH
Q 041572           82 VLKKPMFTAAKF-GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus        82 ~g~tpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH  160 (313)
                      .|.||||+|+.. ++.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|..|.||||
T Consensus       340 ~g~TpLh~A~~~~~~~~iv~lLl~~--gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g----ad~~~~~~~g~T~Lh  413 (682)
T PHA02876        340 LYITPLHQASTLDRNKDIVITLLEL--GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG----ADIEALSQKIGTALH  413 (682)
T ss_pred             CCCcHHHHHHHhCCcHHHHHHHHHc--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCccccCCCCCchHH
Confidence            999999999986 468888888887  8899999999999999999999999999999998    788999999999999


Q ss_pred             HHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          161 SAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       161 ~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +|+..++...+...+++.  .......|.+|.||+++|.+.+
T Consensus       414 ~A~~~~~~~~~vk~Ll~~--gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        414 FALCGTNPYMSVKTLIDR--GANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             HHHHcCCHHHHHHHHHhC--CCCCCcCCCCCChHHHHHHHhC
Confidence            999877642222233322  2334445999999999998753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=9.2e-19  Score=152.05  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCC
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGV  156 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~  156 (313)
                      ++-|..|.+|||+||+.|+..+++.||.+  ++.+|..+....||||+|+.+||.++|+.|++..    +++|+.+..|+
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~r--garvn~tnmgddtplhlaaahghrdivqkll~~k----advnavnehgn  101 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK----ADVNAVNEHGN  101 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhc--ccccccccCCCCcchhhhhhcccHHHHHHHHHHh----cccchhhccCC
Confidence            44667899999999999999999999999  9999999999999999999999999999999987    79999999999


Q ss_pred             CHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          157 NILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       157 TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      ||||+||..|.. .+..-++.....+..  .|++|.||+|.+..
T Consensus       102 tplhyacfwgyd-qiaedli~~ga~v~i--cnk~g~tpldkakp  142 (448)
T KOG0195|consen  102 TPLHYACFWGYD-QIAEDLISCGAAVNI--CNKKGMTPLDKAKP  142 (448)
T ss_pred             CchhhhhhhcHH-HHHHHHHhccceeee--cccCCCCchhhhch
Confidence            999999999975 333222222222222  29999999998764

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.75  E-value=3e-18  Score=166.17  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=136.5

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccH-----HH----HHHHHHHHhccccccchhhhh
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHK-----QT----LEILRIICVGAVDIATAAKET   79 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~-----~~----~~il~~l~~~~~~~~~~~~~~   79 (313)
                      ..+.++.||||+|++.+....   ....++.+..+...........|.     ++    .++++.|+++ ....   +..
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~i---vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i---~~~  102 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDV---VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANV---NAP  102 (480)
T ss_pred             hhhcccchhhhhhhccCCHHH---HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCC---CCC
Confidence            346789999999999988765   333445554444333334444454     33    4889999998 3444   347


Q ss_pred             cCCCCcHHHHHH--HhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcC--CHHHHHHHHcCCcccccccccccCCC
Q 041572           80 ENVLKKPMFTAA--KFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHR--QENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        80 d~~g~tpLh~Aa--~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      |..|.||||+|+  ..|+.++++.|++.  +.+++..|..|+||||+|+..|  +.+++++|++.|    +++|.+|.+|
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g----~din~~d~~g  176 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDN--GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG----VDINAKNRYG  176 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC----CCcccccCCC
Confidence            889999999999  99999999999998  8889999999999999999999  999999999998    7889999999


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCC------CChhhhhhHhhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKD------KTPRELFTEEHK  203 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G------~Tp~dla~~~~~  203 (313)
                      +||||+|+..|+. .+...+++...+  ....+..|      .||++.|.....
T Consensus       177 ~tpL~~A~~~~~~-~iv~~Ll~~ga~--~~~~~~~~~~~~~~~t~l~~a~~~~~  227 (480)
T PHA03100        177 YTPLHIAVEKGNI-DVIKFLLDNGAD--INAGDIETLLFTIFETPLHIAACYNE  227 (480)
T ss_pred             CCHHHHHHHhCCH-HHHHHHHHcCCC--ccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence            9999999999976 333344433222  22236667      788888876543

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=4.9e-18  Score=142.36  Aligned_cols=123  Identities=13%  Similarity=0.020  Sum_probs=98.0

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhc--cccccchhhhhcCCCCc
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVG--AVDIATAAKETENVLKK   85 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~--~~~~~~~~~~~d~~g~t   85 (313)
                      -.+|.+|.|+||.|++.|....                                ++.+.+.  +...-...+.+|..|+|
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~--------------------------------v~~l~~~~~~~~~ga~in~~d~~g~T   62 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDI--------------------------------IARFTPFIRGDCHAAALNATDDAGQM   62 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHH--------------------------------HHHHHHHhccchhhhhhhccCCCCCc
Confidence            3568899999999997776544                                3332211  00000123447889999


Q ss_pred             HHHHHHHhCc----HHHHHHHHHhhCCCCcccccC-CCChHHHHHHHcCCHHHHHHHHcC-CcccccccccccCCCCCHH
Q 041572           86 PMFTAAKFGI----YEIVMEIIISYFPWSLSFSNE-DGDDIFHAAVKHRQENVFNIIFNM-PKAQTFFVADIDVKGVNIL  159 (313)
Q Consensus        86 pLh~Aa~~G~----~~~v~~Ll~~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~in~~d~~G~TpL  159 (313)
                      |||+|+..|+    .++++.|++.  +.+++.+|. .|+||||+|+..++.+++++|++. +    ++++.+|.+|.|||
T Consensus        63 ~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g----~~~~~~n~~g~tpL  136 (169)
T PHA02741         63 CIHIAAEKHEAQLAAEIIDHLIEL--GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG----IDLHFCNADNKSPF  136 (169)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc--CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCCCHH
Confidence            9999999999    5888999988  788898885 999999999999999999999974 5    68899999999999


Q ss_pred             HHHHhcCCC
Q 041572          160 HSAARSVPS  168 (313)
Q Consensus       160 H~Aa~~~~~  168 (313)
                      |+|+..++.
T Consensus       137 ~~A~~~~~~  145 (169)
T PHA02741        137 ELAIDNEDV  145 (169)
T ss_pred             HHHHHCCCH
Confidence            999999876

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.75  E-value=5.2e-18  Score=172.97  Aligned_cols=176  Identities=14%  Similarity=0.114  Sum_probs=131.2

Q ss_pred             CCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhccccccchhhhhcCCCCcHH
Q 041572           12 ADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus        12 ~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      .+|.|+||++...|....+....   +.+....+.........|..+    +...+.+.++ ..+.   +.++.+|.|||
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~lll---e~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~-ga~v---~~~~~r~~TpL  544 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLL---EGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEH-GANV---DLRTGRGYTPL  544 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhh---hcCCccCccchhccchhhhhhhhhhHHHHHHHhhc-CCce---ehhcccccchH
Confidence            57899999999888887744422   222122223333333444333    2456666666 2333   44889999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCC
Q 041572           88 FTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVP  167 (313)
Q Consensus        88 h~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  167 (313)
                      |.||.+|+.++|++||++  +.+++.+|+.|+||||.||..|+.+|+.+|+++|    +.+|..|.+|.||||+|++.|+
T Consensus       545 h~A~~~g~v~~VkfLLe~--gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G----A~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEH--GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG----ASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             HHHHhcCCchHHHHhhhC--CccccccCCCCCChhhHHHHcChHHHHHHHHHcC----CCCCcccccCcchhHHHHHhcc
Confidence            999999999999999999  9999999999999999999999999999999999    8999999999999999999999


Q ss_pred             CCCcchHHhhhhHH---hhhhhhcCCCCChhhhhhHh
Q 041572          168 SSEVSGAALQMQRE---LQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       168 ~~~i~~~~l~~~~~---l~~~~~n~~G~Tp~dla~~~  201 (313)
                      .+ +...++...++   ......|..|.+|.++..+.
T Consensus       619 ~~-~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  619 LS-VVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             cc-hhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            83 33333332222   11223388999999998763

>PHA03095 ankyrin-like protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=161.67  Aligned_cols=148  Identities=11%  Similarity=0.023  Sum_probs=91.3

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH-----HHHHHHHHhccccccchhhhhcCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT-----LEILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~-----~~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      -.+|..|.||||.+++.+.....-+....++.+.....++..+.+..|.++     .++++.|+++ ..++   +.+|..
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~i---n~~~~~  116 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADV---NAKDKV  116 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCC---CCCCCC
Confidence            456777888888888777222223334444555554444445555556554     3677777777 3333   336667


Q ss_pred             CCcHHHHHH--HhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcC--CHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           83 LKKPMFTAA--KFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHR--QENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        83 g~tpLh~Aa--~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      |+||||+|+  ..++.++++.|++.  +.+++.+|..|+||||+|+..+  +.+++++|++.|    ++++.+|..|+||
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~--gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g----~~~~~~d~~g~t~  190 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRK--GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG----ADVYAVDDRFRSL  190 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC----CCCcccCCCCCCH
Confidence            777777777  45567777777776  6667777777777777777655  456677777665    3444445555555


Q ss_pred             HHHHHhc
Q 041572          159 LHSAARS  165 (313)
Q Consensus       159 LH~Aa~~  165 (313)
                      ||+|+..
T Consensus       191 Lh~~~~~  197 (471)
T PHA03095        191 LHHHLQS  197 (471)
T ss_pred             HHHHHHH
Confidence            5555543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.71  E-value=3.2e-17  Score=142.11  Aligned_cols=124  Identities=13%  Similarity=0.189  Sum_probs=95.4

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhC--cHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHc---CCHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFG--IYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKH---RQENV  133 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~---g~~~i  133 (313)
                      ++++.|++. .      +..|..|.||||+|+..+  +.++++.|++.  +.+++.+| ..|+||||+|+..   ++.++
T Consensus        35 ~~vk~Li~~-~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~TpLh~a~~~~~~~~~ei  105 (209)
T PHA02859         35 EGVKKWIKF-V------NDCNDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSALHHYLSFNKNVEPEI  105 (209)
T ss_pred             HHHHHHHHh-h------hccCccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCHHHHHHHhCccccHHH
Confidence            567777655 1      226778999999999854  89999999998  88889887 5899999998864   47899


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHhcC--CCCCcchHHhhhhHHhhhhhhcCCCCChhhhhh
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAARSV--PSSEVSGAALQMQRELQWFKLNDKDKTPRELFT  199 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~--~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~  199 (313)
                      +++|++.|    +++|.+|.+|.||||+|+...  +. .+...+++..  ......|.+|.||++.+.
T Consensus       106 v~~Ll~~g----adin~~d~~G~TpLh~a~~~~~~~~-~iv~~Li~~g--adin~~d~~g~t~Lh~~a  166 (209)
T PHA02859        106 LKILIDSG----SSITEEDEDGKNLLHMYMCNFNVRI-NVIKLLIDSG--VSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             HHHHHHCC----CCCCCcCCCCCCHHHHHHHhccCCH-HHHHHHHHcC--CCcccccCCCCcHHHHHH
Confidence            99999998    789999999999999998653  33 2333333332  333444889999999653

>PHA02946 ankyin-like protein; Provisional

Probab=99.71  E-value=4.1e-17  Score=156.71  Aligned_cols=115  Identities=18%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             hcCCCCcHHHHHHHhC--cHHHHHHHHHhhCCCCccc-ccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           79 TENVLKKPMFTAAKFG--IYEIVMEIIISYFPWSLSF-SNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      +|.+|+||||+|+..+  ..++++.|++.  ++.++. .|..|+|||| |+..|+.+++++|++.+    ++++.+|..|
T Consensus       101 ~d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g----ad~~~~d~~G  173 (446)
T PHA02946        101 CDKQHKTPLYYLSGTDDEVIERINLLVQY--GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG----FEARIVDKFG  173 (446)
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc----ccccccCCCC
Confidence            4445555555544433  24445555544  333432 3445555554 33344555555555544    4555566666


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      +||||+|+..++. .+....+...........|.+|.||+++|.+.
T Consensus       174 ~t~Lh~A~~~~~~-~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        174 KNHIHRHLMSDNP-KASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            6666666554443 11111111111222233377788888888764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.71  E-value=3.7e-17  Score=136.63  Aligned_cols=99  Identities=9%  Similarity=0.094  Sum_probs=80.6

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHH---HHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEI---VMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFN  135 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~---v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~  135 (313)
                      ++++.+.+.+ .   ..+.+|.+|+||||+||..|+.+.   ++.|++.  +..++.+| ..|+||||+|+..|+.++++
T Consensus        38 ~~~~~l~~~g-~---~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d~~~g~TpLh~A~~~g~~~iv~  111 (166)
T PHA02743         38 EVAPFISGDG-H---LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM--GADINARELGTGNTLLHIAASTKNYELAE  111 (166)
T ss_pred             HHHHHHhhcc-h---hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Confidence            4556666552 2   223478889999999999988654   7888887  78889888 58999999999999999999


Q ss_pred             HHHc-CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          136 IIFN-MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       136 ~Ll~-~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +|++ .+    ++++.+|.+|.||||+|+..++.
T Consensus       112 ~Ll~~~g----ad~~~~d~~g~tpL~~A~~~~~~  141 (166)
T PHA02743        112 WLCRQLG----VNLGAINYQHETAYHIAYKMRDR  141 (166)
T ss_pred             HHHhccC----CCccCcCCCCCCHHHHHHHcCCH
Confidence            9995 66    67889999999999999998876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=1.5e-17  Score=137.09  Aligned_cols=84  Identities=8%  Similarity=-0.071  Sum_probs=75.9

Q ss_pred             hcCCCCcHHHHHHHhCcHH---HHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHcC-CcccccccccccC
Q 041572           79 TENVLKKPMFTAAKFGIYE---IVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIFNM-PKAQTFFVADIDV  153 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~---~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~in~~d~  153 (313)
                      +|.+|+||||+|+..|+.+   +++.|++.  +.+++.+| ..|+||||+|+..|+.+++++|++. +    +++|.+|.
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g----~d~n~~~~  124 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG----VNMEILNY  124 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc--CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC----CCCccccC
Confidence            6789999999999999874   68889988  78889998 4999999999999999999999974 5    68899999


Q ss_pred             CCCCHHHHHHhcCCC
Q 041572          154 KGVNILHSAARSVPS  168 (313)
Q Consensus       154 ~G~TpLH~Aa~~~~~  168 (313)
                      .|.||||+|+..|+.
T Consensus       125 ~g~tpL~~A~~~~~~  139 (154)
T PHA02736        125 AFKTPYYVACERHDA  139 (154)
T ss_pred             CCCCHHHHHHHcCCH
Confidence            999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.70  E-value=7.3e-17  Score=157.27  Aligned_cols=190  Identities=9%  Similarity=-0.018  Sum_probs=135.1

Q ss_pred             CCCCCCCCCCCCCCccccccccCCCcc---hhhhhhhccCCCCCchhHhhhhhccccHH-------HHHHHHHHHhcccc
Q 041572            2 GPHPHLHSENADGDLEKQLSETSPFAF---GLYISYFYLNPYYPPSIKSIRNTKLTHKQ-------TLEILRIICVGAVD   71 (313)
Q Consensus         2 ~~~~~~~~~n~~g~t~l~l~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~k~~~~~-------~~~il~~l~~~~~~   71 (313)
                      |.+.+.  ++ .+.||||.+.+.+...   ...+...+++.+.....++..+.+..|.+       ..++++.|+++| .
T Consensus        60 GAdvn~--~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-a  135 (494)
T PHA02989         60 GADVNY--KG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-I  135 (494)
T ss_pred             CCCccC--CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-C
Confidence            555443  23 5799999987755321   12234455566666555555555555532       258999999994 4


Q ss_pred             ccchhhhhcCCCCcHHHHHHHh--CcHHHHHHHHHhhCCCCccc-ccCCCChHHHHHHHcC----CHHHHHHHHcCCccc
Q 041572           72 IATAAKETENVLKKPMFTAAKF--GIYEIVMEIIISYFPWSLSF-SNEDGDDIFHAAVKHR----QENVFNIIFNMPKAQ  144 (313)
Q Consensus        72 ~~~~~~~~d~~g~tpLh~Aa~~--G~~~~v~~Ll~~~~~~~~~~-~d~~G~t~Lh~A~~~g----~~~iv~~Ll~~~~~~  144 (313)
                      +.+  +.+|..|+||||+|+..  ++.++++.|++.  +.+++. .|..|.||||+|+.++    +.+++++|++.|...
T Consensus       136 din--~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~--Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v  211 (494)
T PHA02989        136 NVN--DVKNSRGYNLLHMYLESFSVKKDVIKILLSF--GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI  211 (494)
T ss_pred             Ccc--cccCCCCCCHHHHHHHhccCCHHHHHHHHHc--CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence            431  34788999999998764  689999999998  777777 6789999999998765    889999999987421


Q ss_pred             ----------------------------------ccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCC
Q 041572          145 ----------------------------------TFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDK  190 (313)
Q Consensus       145 ----------------------------------~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~  190 (313)
                                                        .+++|.+|.+|+||||+|+..|+. .+...+++...++  ...|++
T Consensus       212 n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~-~~v~~LL~~Gadi--n~~d~~  288 (494)
T PHA02989        212 ETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY-EAFNYLLKLGDDI--YNVSKD  288 (494)
T ss_pred             cccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCH-HHHHHHHHcCCCc--cccCCC
Confidence                                              124678889999999999999887 4445555544443  344899


Q ss_pred             CCChhhhhhHhh
Q 041572          191 DKTPRELFTEEH  202 (313)
Q Consensus       191 G~Tp~dla~~~~  202 (313)
                      |.||++.|.+..
T Consensus       289 G~TpL~~A~~~~  300 (494)
T PHA02989        289 GDTVLTYAIKHG  300 (494)
T ss_pred             CCCHHHHHHHcC
Confidence            999999998754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.9e-17  Score=146.68  Aligned_cols=147  Identities=14%  Similarity=0.221  Sum_probs=82.2

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCC-----------CCchhHhhhhhccccHHHHHHHHHHHhccccccchhh
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPY-----------YPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAK   77 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~   77 (313)
                      .-|.+|.|+||+++..+.+..-   ...|+.+           |.|.+-.- -.+.....-.+++..|.+-+  +++. +
T Consensus       263 laDsNGNTALHYsVSHaNF~VV---~~LLDSgvC~VD~qNrAGYtpiMLaA-LA~lk~~~d~~vV~~LF~mg--nVNa-K  335 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVV---SILLDSGVCDVDQQNRAGYTPVMLAA-LAKLKQPADRTVVERLFKMG--DVNA-K  335 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHH---HHHhccCcccccccccccccHHHHHH-HHhhcchhhHHHHHHHHhcc--Ccch-h
Confidence            4478899999999987666551   1222222           22211000 01111112234455555542  1111 0


Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                       -.+.|.|+|++|+.+|+.++|+.||..  ++++|.+|.+|.|+|++||++||+|++++|+..+.   +++...|.+|.|
T Consensus       336 -AsQ~gQTALMLAVSHGr~d~vk~LLac--gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~DgST  409 (452)
T KOG0514|consen  336 -ASQHGQTALMLAVSHGRVDMVKALLAC--GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDVDGST  409 (452)
T ss_pred             -hhhhcchhhhhhhhcCcHHHHHHHHHc--cCCCccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecCCCch
Confidence             234566666666666666666666654  66666666666666666666666666666666552   555666666666


Q ss_pred             HHHHHHhcCCC
Q 041572          158 ILHSAARSVPS  168 (313)
Q Consensus       158 pLH~Aa~~~~~  168 (313)
                      +|.+|-..||.
T Consensus       410 Al~IAleagh~  420 (452)
T KOG0514|consen  410 ALSIALEAGHR  420 (452)
T ss_pred             hhhhHHhcCch
Confidence            66666666665

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.68  E-value=2e-16  Score=158.14  Aligned_cols=140  Identities=13%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             hhhhccccHHH------HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCc--HHHHHHHHHhhCCCCcccccCCCC
Q 041572           48 IRNTKLTHKQT------LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGI--YEIVMEIIISYFPWSLSFSNEDGD  119 (313)
Q Consensus        48 ~~~~k~~~~~~------~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~~d~~G~  119 (313)
                      ..+.+..|..+      .++++.|+++ ..++   +.+|.+|.||||+|++.|+  .++++.|++.  +++++.+|..|+
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe~-GADV---N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~G~  248 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCNN-GVNV---NLQNNHLITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVNGM  248 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHHc-CCCC---CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCCCC
Confidence            34455566532      3799999999 3444   3478899999999999995  5999999998  889999999999


Q ss_pred             hHHHHH-------------------------------------HHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572          120 DIFHAA-------------------------------------VKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus       120 t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      ||||.|                                     +.+|+.+++++|++.|    +++|.+|.+|+||||+|
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G----AdIN~kD~~G~TPLH~A  324 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG----VKLHYKDSAGRTCLHQY  324 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC----CceeccCCCCCCHHHHH
Confidence            999975                                     3457788889999888    78999999999999998


Q ss_pred             HhcC--CCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          163 ARSV--PSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       163 a~~~--~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      +..+  +. .+...+++..  ......|+.|.||++++..
T Consensus       325 aa~~~~~~-eIVklLLe~G--ADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        325 ILRHNIST-DIIKLLHEYG--NDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHHhCCCc-hHHHHHHHcC--CCCccCCCCCCCHHHHHHH
Confidence            7543  43 3344444433  3344458999999998754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.67  E-value=1.6e-16  Score=163.47  Aligned_cols=172  Identities=12%  Similarity=0.032  Sum_probs=100.7

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcH
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +.+++++|+.|+..|....   ...++..+..+...+..+.+..|.++.    ++++.|+++ ..+.   +.+|.+|+||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~---l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadi---n~~d~~G~Tp  594 (823)
T PLN03192        522 DPNMASNLLTVASTGNAAL---LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNV---HIRDANGNTA  594 (823)
T ss_pred             CccchhHHHHHHHcCCHHH---HHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCC---CCcCCCCCCH
Confidence            3345566777766655432   222333333333444444455555443    556666665 2322   3356666666


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+|+..|+.++++.|++.  +...+  +..|.++||.|+.+|+.++++.|++.|    +++|.+|.+|+||||+|+..|
T Consensus       595 L~~A~~~g~~~iv~~L~~~--~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~G----adin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHF--ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQG----LNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhc--CcccC--cccCchHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCC
Confidence            6666666666666666654  33222  344556677777777777777777777    678888888888888888888


Q ss_pred             CCCCcchHHhhhhHHhhhhhhcCCC-CChhhhhhH
Q 041572          167 PSSEVSGAALQMQRELQWFKLNDKD-KTPRELFTE  200 (313)
Q Consensus       167 ~~~~i~~~~l~~~~~l~~~~~n~~G-~Tp~dla~~  200 (313)
                      +. .+...+++...+  ....|.+| .||.+++..
T Consensus       667 ~~-~iv~~Ll~~GAd--v~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        667 HV-DMVRLLIMNGAD--VDKANTDDDFSPTELREL  698 (823)
T ss_pred             cH-HHHHHHHHcCCC--CCCCCCCCCCCHHHHHHH
Confidence            76 333344433322  22336666 788877654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.67  E-value=9e-17  Score=164.02  Aligned_cols=181  Identities=15%  Similarity=0.080  Sum_probs=138.0

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHH--H---HHHHhccccccchhhhhcC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEI--L---RIICVGAVDIATAAKETEN   81 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~i--l---~~l~~~~~~~~~~~~~~d~   81 (313)
                      ...++..|.||+|.++.++....   ....+.++..+..+...+.+..|..+...  .   ..+.+.    -.+.+....
T Consensus       400 ~~~~gk~gvTplh~aa~~~~~~~---v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~----g~~~n~~s~  472 (1143)
T KOG4177|consen  400 PNSAGKNGVTPLHVAAHYGNPRV---VKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQY----GADPNAVSK  472 (1143)
T ss_pred             cccCCCCCcceeeehhhccCcce---EEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhc----CCCcchhcc
Confidence            45678889999999888777765   33345677777788888888888877643  2   222222    123445677


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhC--------------------------------CCCcccccCCCChHHHHHHHcC
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYF--------------------------------PWSLSFSNEDGDDIFHAAVKHR  129 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~--------------------------------~~~~~~~d~~G~t~Lh~A~~~g  129 (313)
                      .|.||||+|+..|+.++++.|++. .                                +..++.++..|.||||.||.+|
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~-~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEG-GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhc-CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcC
Confidence            888888888888888888888874 2                                3446677888999999999999


Q ss_pred             CHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          130 QENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +.++|++|++++    ++++.+|+.|.||||.||..|+. .+..++++.  ....+..|.+|.||+.+|....
T Consensus       552 ~v~~VkfLLe~g----Adv~ak~~~G~TPLH~Aa~~G~~-~i~~LLlk~--GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  552 NVDLVKFLLEHG----ADVNAKDKLGYTPLHQAAQQGHN-DIAELLLKH--GASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             CchHHHHhhhCC----ccccccCCCCCChhhHHHHcChH-HHHHHHHHc--CCCCCcccccCcchhHHHHHhc
Confidence            999999999999    89999999999999999999987 444444443  3334445889999999998753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.66  E-value=1.9e-16  Score=132.34  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=90.5

Q ss_pred             hcCCCCcHHHHHHHhCcH----HHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHH---HHHHHcCCcccccccccc
Q 041572           79 TENVLKKPMFTAAKFGIY----EIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENV---FNIIFNMPKAQTFFVADI  151 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i---v~~Ll~~~~~~~~~in~~  151 (313)
                      .+.++.++||.||+.|+.    ++++.|++.  +..++.+|..|+||||+|+.+|+.+.   +++|++.+    +++|.+
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G----adin~~   89 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG----ADINAR   89 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC----CCCCCC
Confidence            566788999999999998    455566666  77788899999999999999998765   78999998    789999


Q ss_pred             c-CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          152 D-VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       152 d-~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      | ..|+||||+|+..++.+ +...++. .........|.+|.||+++|....
T Consensus        90 d~~~g~TpLh~A~~~g~~~-iv~~Ll~-~~gad~~~~d~~g~tpL~~A~~~~  139 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYE-LAEWLCR-QLGVNLGAINYQHETAYHIAYKMR  139 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHH-HHHHHHh-ccCCCccCcCCCCCCHHHHHHHcC
Confidence            8 58999999999999872 3223321 112223344889999999998754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.66  E-value=4.1e-16  Score=151.85  Aligned_cols=153  Identities=12%  Similarity=0.132  Sum_probs=114.6

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHH-------HHHHHHHHHhccccccchhhhh
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQ-------TLEILRIICVGAVDIATAAKET   79 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~-------~~~il~~l~~~~~~~~~~~~~~   79 (313)
                      +-.+|.+|.||||.|+..+.....-+..++++.+..+...+..+.+..|..       ..++++.|+++| .+++.  ..
T Consensus       102 iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~--~~  178 (489)
T PHA02798        102 INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINT--HN  178 (489)
T ss_pred             CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCccc--cc
Confidence            445788999999999987654333334455566655554444555555443       258899999983 44332  12


Q ss_pred             cCCCCcHHHHHHHh----CcHHHHHHHHHhhCCC---------------------------------------CcccccC
Q 041572           80 ENVLKKPMFTAAKF----GIYEIVMEIIISYFPW---------------------------------------SLSFSNE  116 (313)
Q Consensus        80 d~~g~tpLh~Aa~~----G~~~~v~~Ll~~~~~~---------------------------------------~~~~~d~  116 (313)
                      +..|.||||.++..    ++.+++++|++.  +.                                       +++.+|.
T Consensus       179 ~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~--Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~  256 (489)
T PHA02798        179 NKEKYDTLHCYFKYNIDRIDADILKLFVDN--GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDE  256 (489)
T ss_pred             CcCCCcHHHHHHHhccccCCHHHHHHHHHC--CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCc
Confidence            45789999988764    478888888876  32                                       3556788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          117 DGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       117 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .|+||||+|+.+|+.+++++|++.|    +++|.+|..|+||||+|++.++.
T Consensus       257 ~G~TPL~~A~~~~~~~~v~~LL~~G----Adin~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        257 LGFNPLYYSVSHNNRKIFEYLLQLG----GDINIITELGNTCLFTAFENESK  304 (489)
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC----CcccccCCCCCcHHHHHHHcCcH
Confidence            8999999999999999999999999    78999999999999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.65  E-value=6.9e-16  Score=139.70  Aligned_cols=102  Identities=14%  Similarity=-0.008  Sum_probs=85.5

Q ss_pred             HHHHHHHhccccccchhh-hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAK-ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNII  137 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~-~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~L  137 (313)
                      ++++.|+++| .+.+..+ ..+..|.||||+|+..|+.++++.|++.  +++++.++ ..|.||||+|+..|+.+++++|
T Consensus        47 eivk~LL~~G-AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~g~TpLh~Aa~~~~~eivklL  123 (300)
T PHA02884         47 DIIDAILKLG-ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEAKITPLYISVLHGCLKCLEIL  123 (300)
T ss_pred             HHHHHHHHCC-CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            6789999984 4443311 1256899999999999999999999988  88888864 5799999999999999999999


Q ss_pred             HcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          138 FNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       138 l~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      ++.|    ++++.+|.+|.||||+|++.++.
T Consensus       124 L~~G----Adin~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884        124 LSYG----ADINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             HHCC----CCCCCCCCCCCCHHHHHHHhCCh
Confidence            9998    78899999999999999987765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.65  E-value=8.9e-16  Score=156.62  Aligned_cols=117  Identities=21%  Similarity=0.153  Sum_probs=89.7

Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc--------------CCCChHHHHHHHcCCHHHHHHHHcCCcccc
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN--------------EDGDDIFHAAVKHRQENVFNIIFNMPKAQT  145 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  145 (313)
                      +..|.||||+||.+|+.++++.|+++  +++++.++              ..|+||||+|+..|+.+++++|++.+    
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~--GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g----  198 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLER--GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP----  198 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhC--CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC----
Confidence            35799999999999999999999998  77776543              36999999999999999999999998    


Q ss_pred             cccccccCCCCCHHHHHHhcCCCCC--------cchHHhhhhHHhh-----hhhhcCCCCChhhhhhHhh
Q 041572          146 FFVADIDVKGVNILHSAARSVPSSE--------VSGAALQMQRELQ-----WFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       146 ~~in~~d~~G~TpLH~Aa~~~~~~~--------i~~~~l~~~~~l~-----~~~~n~~G~Tp~dla~~~~  202 (313)
                      +++|.+|..|+||||+|+..+....        +...++.......     ....|++|.||+++|.+.+
T Consensus       199 adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       199 ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            6899999999999999999873210        0011111111000     0123899999999998753

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.64  E-value=6.6e-16  Score=145.40  Aligned_cols=149  Identities=9%  Similarity=-0.054  Sum_probs=114.3

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhccccccchh--hhhcCCC
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIATAA--KETENVL   83 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~~~~--~~~d~~g   83 (313)
                      .++.+.|+||.++.++.+.. -+..++++.+.....+  ...+..|.++    .++++.|+++|....+..  ...+..+
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~-eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~  188 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEI-DIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQ  188 (437)
T ss_pred             ccccccHHHHHHHHhcCCCH-HHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhc
Confidence            55678999999998655433 2235555666554321  1234556555    388999999953222111  1233457


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .|++|.|+..|+.++++.|++.  +++++.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|.||||+|+
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~--GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G----AdIN~~d~~G~TpLh~Aa  262 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPY--IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG----ANVNAVMSNGYTCLDVAV  262 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhC--cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHH
Confidence            8999999999999999999998  8889999999999999999999999999999998    789999999999999999


Q ss_pred             hcCC
Q 041572          164 RSVP  167 (313)
Q Consensus       164 ~~~~  167 (313)
                      ..|+
T Consensus       263 ~~g~  266 (437)
T PHA02795        263 DRGS  266 (437)
T ss_pred             HcCC
Confidence            9985

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.64  E-value=1.6e-16  Score=131.00  Aligned_cols=119  Identities=14%  Similarity=0.065  Sum_probs=85.7

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHh---hCCCCcccccCCCChHHHHHHHcCCHH---HHHHHHcCCcccccccccc
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIIS---YFPWSLSFSNEDGDDIFHAAVKHRQEN---VFNIIFNMPKAQTFFVADI  151 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~---~~~~~~~~~d~~G~t~Lh~A~~~g~~~---iv~~Ll~~~~~~~~~in~~  151 (313)
                      .+|.+|.||||+||+.|+.+.+......   ..+..++.+|.+|+||||+|+..|+.+   ++++|++.+    +++|.+
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g----adin~~   87 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG----ADINGK   87 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC----CCcccc
Confidence            3678899999999999984322111111   012234567899999999999999874   688999998    789999


Q ss_pred             c-CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          152 D-VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       152 d-~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      | .+|+||||+|+..++.+ +...++.. ........|+.|+||+++|...+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~-i~~~Ll~~-~g~d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYE-LATWLCNQ-PGVNMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHH-HHHHHHhC-CCCCCccccCCCCCHHHHHHHcC
Confidence            8 49999999999999873 33333321 12233344889999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=152.44  Aligned_cols=176  Identities=11%  Similarity=0.026  Sum_probs=115.3

Q ss_pred             CCCCCCCccccccccCCCcch-hhhhhhccCC-CCCchhHhhhhhccc-cHH----HHHHHHHHHhccccccchhhhhcC
Q 041572            9 SENADGDLEKQLSETSPFAFG-LYISYFYLNP-YYPPSIKSIRNTKLT-HKQ----TLEILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~k~~-~~~----~~~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      .+|.+|.||||.|+.++.... ..+....+.. +.. .+.   +.... +.+    -.++++.|+++ ..+++   .+|.
T Consensus        63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~---~~~~~~~~a~~~~~~e~vk~Ll~~-Gadin---~~d~  134 (661)
T PHA02917         63 HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIN---DFNIFSYMKSKNVDVDLIKVLVEH-GFDLS---VKCE  134 (661)
T ss_pred             ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCC---CcchHHHHHhhcCCHHHHHHHHHc-CCCCC---ccCC
Confidence            567788888888888776432 1111122211 110 000   11111 222    14889999999 45444   4788


Q ss_pred             CCCcHHHHH--HHhCcHHHHHHHHHhhCCCCcccccC---CC-----------ChHHHHHHH-----------cCCHHHH
Q 041572           82 VLKKPMFTA--AKFGIYEIVMEIIISYFPWSLSFSNE---DG-----------DDIFHAAVK-----------HRQENVF  134 (313)
Q Consensus        82 ~g~tpLh~A--a~~G~~~~v~~Ll~~~~~~~~~~~d~---~G-----------~t~Lh~A~~-----------~g~~~iv  134 (313)
                      +|+||||.|  +..|+.++++.|++.  +++++.+|.   .|           +||||+|+.           +++.+++
T Consensus       135 ~g~T~L~~~~a~~~~~~eivklLi~~--Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        135 NHRSVIENYVMTDDPVPEIIDLFIEN--GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             CCccHHHHHHHccCCCHHHHHHHHHc--CCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence            999999964  357899999999998  888876553   34           599999986           5689999


Q ss_pred             HHHHcCCcccccccccccCCCCCHHHHHHhcCCCC-CcchHHhhhhHHhhh--hhhcCCCCChhhhhh
Q 041572          135 NIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSS-EVSGAALQMQRELQW--FKLNDKDKTPRELFT  199 (313)
Q Consensus       135 ~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~-~i~~~~l~~~~~l~~--~~~n~~G~Tp~dla~  199 (313)
                      ++|++.|    +++|.+|.+|+||||+|++.|+.+ .+...+++ ..+...  ...|..|.||+.++.
T Consensus       213 ~~Li~~G----advn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        213 KCLINHG----IKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             HHHHHCC----CCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHH
Confidence            9999999    799999999999999999999863 13333221 111110  112445667666665

>PHA02917 ankyrin-like protein; Provisional

Probab=99.62  E-value=1.1e-15  Score=152.74  Aligned_cols=177  Identities=12%  Similarity=0.050  Sum_probs=121.0

Q ss_pred             CCCCCCCccccccccC---CCcchhhhhhhccCCCCCchhHhhhhhccccHHHH--------HHHHHHHhccccccchhh
Q 041572            9 SENADGDLEKQLSETS---PFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL--------EILRIICVGAVDIATAAK   77 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~--------~il~~l~~~~~~~~~~~~   77 (313)
                      ..|++|.||||.|+..   +....   .-.+++.+..+..+...+.++.|.++.        ++++.|++.+ ..   .+
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~---v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~-~~---~n   99 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEV---VKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEAT-GY---SN   99 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHH---HHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhcc-CC---CC
Confidence            4588999999997554   33333   333445555544444455566665553        4566776651 11   11


Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHH--HHcCCHHHHHHHHcCCcccccccccccC--
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAA--VKHRQENVFNIIFNMPKAQTFFVADIDV--  153 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~in~~d~--  153 (313)
                      ..  +..+++|.|+.+|+.++|+.|++.  +++++.+|.+|+||||.|  +.+|+.+++++|++.|    +++|.+|.  
T Consensus       100 ~~--~~~~~~~~a~~~~~~e~vk~Ll~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G----a~vn~~d~~~  171 (661)
T PHA02917        100 IN--DFNIFSYMKSKNVDVDLIKVLVEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG----CSVLYEDEDD  171 (661)
T ss_pred             CC--CcchHHHHHhhcCCHHHHHHHHHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC----CCcccccccc
Confidence            12  234678889999999999999998  999999999999999965  4578999999999999    67776553  


Q ss_pred             -CC-----------CCHHHHHHhc-----------CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          154 -KG-----------VNILHSAARS-----------VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       154 -~G-----------~TpLH~Aa~~-----------~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                       .|           .||||+|+..           ++. .+...++..  ..+....|.+|.||+++|.++..
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~-eiv~~Li~~--Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP-EVVKCLINH--GIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcH-HHHHHHHHC--CCCcccCCCCCCcHHHHHHHcCC
Confidence             34           5999999862           222 222333332  23344458999999999998654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.61  E-value=6.1e-16  Score=144.48  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCC-----------------------------
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWS-----------------------------  110 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~-----------------------------  110 (313)
                      +++++++++ ..+++.   .|.+||||||.|+..||..++++|++.  +++                             
T Consensus        87 e~v~~l~e~-ga~Vn~---~d~e~wtPlhaaascg~~~i~~~li~~--gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~  160 (527)
T KOG0505|consen   87 EMVKFLVEN-GANVNA---QDNEGWTPLHAAASCGYLNIVEYLIQH--GANLLAVNSDGNMPYDLAEDEATLDVLETEMA  160 (527)
T ss_pred             HHHHHHHHh-cCCccc---cccccCCcchhhcccccHHHHHHHHHh--hhhhhhccCCCCCccccccCcchhHHHHHHHH
Confidence            559999999 566654   789999999999999999999999986  221                             


Q ss_pred             ------------------------------cccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHH
Q 041572          111 ------------------------------LSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus       111 ------------------------------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH  160 (313)
                                                    .+.++..|.|.||+|+.+|..++.++|++.+    ..++.+|.+|+||||
T Consensus       161 r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag----~~~~~~D~dgWtPlH  236 (527)
T KOG0505|consen  161 RQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG----YSVNIKDYDGWTPLH  236 (527)
T ss_pred             HhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc----cCcccccccCCCccc
Confidence                                          2334556899999999999999999999998    789999999999999


Q ss_pred             HHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          161 SAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       161 ~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      .|+..|+.+ ....+++...++...  ++.|+||+|++.+
T Consensus       237 AAA~Wg~~~-~~elL~~~ga~~d~~--t~~g~~p~dv~de  273 (527)
T KOG0505|consen  237 AAAHWGQED-ACELLVEHGADMDAK--TKMGETPLDVADE  273 (527)
T ss_pred             HHHHhhhHh-HHHHHHHhhcccchh--hhcCCCCccchhh
Confidence            999999873 333444444433333  8899999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.60  E-value=2.3e-15  Score=136.30  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=92.9

Q ss_pred             hcCCCCcH-HHHHHHhCcHHHHHHHHHhhCCCCccccc----CCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc-
Q 041572           79 TENVLKKP-MFTAAKFGIYEIVMEIIISYFPWSLSFSN----EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-  152 (313)
Q Consensus        79 ~d~~g~tp-Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d----~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-  152 (313)
                      +|+.|+|+ ||.|++.|+.++++.|++.  +++++.+|    ..|.||||+|+..|+.+++++|++.|    +++|.++ 
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G----ADVN~~~~  101 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG----ADVNRYAE  101 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcCcccC
Confidence            67777775 5667777999999999998  78888874    58999999999999999999999999    7899864 


Q ss_pred             CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          153 VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       153 ~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ..|.||||+|+..++. .+...++....  .....|..|.||+++|.+..
T Consensus       102 ~~g~TpLh~Aa~~~~~-eivklLL~~GA--din~kd~~G~TpL~~A~~~~  148 (300)
T PHA02884        102 EAKITPLYISVLHGCL-KCLEILLSYGA--DINIQTNDMVTPIELALMIC  148 (300)
T ss_pred             CCCCCHHHHHHHcCCH-HHHHHHHHCCC--CCCCCCCCCCCHHHHHHHhC
Confidence            6899999999999987 33334443333  33344889999999998743

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.3e-15  Score=144.18  Aligned_cols=143  Identities=9%  Similarity=0.021  Sum_probs=103.0

Q ss_pred             CCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHH----------HHHHHHHHHhccccccchhhhhcC
Q 041572           12 ADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQ----------TLEILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus        12 ~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~----------~~~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      .+|.|+||+++..+.... -+..++++.+.....+. ...+..|..          ..++++.|+++| .++   +.+|.
T Consensus        33 ~~g~t~l~~~~~~~~~~~-~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~G-adi---n~~d~  106 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKI-KIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFG-ADI---NLKTF  106 (494)
T ss_pred             cCCCCHHHHHHhcCCCCh-HHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCC-CCC---CCCCC
Confidence            468999987655433211 11233334443332221 112333322          247899999994 444   44788


Q ss_pred             CCCcHHHHHHHh---CcHHHHHHHHHhhCCCCc-ccccCCCChHHHHHHHc--CCHHHHHHHHcCCccccccccc-ccCC
Q 041572           82 VLKKPMFTAAKF---GIYEIVMEIIISYFPWSL-SFSNEDGDDIFHAAVKH--RQENVFNIIFNMPKAQTFFVAD-IDVK  154 (313)
Q Consensus        82 ~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~-~~~d~~G~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~in~-~d~~  154 (313)
                      +|.||||.|+..   |+.++++.|+++  ++++ +.+|..|+||||+|+..  ++.+++++|++.|    ++++. .|..
T Consensus       107 ~g~tpL~~a~~~~~~~~~eiv~~Ll~~--Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G----adi~~~~~~~  180 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCDMLRFLLSK--GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG----VNLFEKTSLY  180 (494)
T ss_pred             CCCcHHHHHHHhcccCcHHHHHHHHHC--CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC----CCcccccccc
Confidence            999999988765   689999999998  8888 78999999999999864  6889999999999    67777 6889


Q ss_pred             CCCHHHHHHhcC
Q 041572          155 GVNILHSAARSV  166 (313)
Q Consensus       155 G~TpLH~Aa~~~  166 (313)
                      |.||||+|++.+
T Consensus       181 g~tpL~~a~~~~  192 (494)
T PHA02989        181 GLTPMNIYLRND  192 (494)
T ss_pred             CCChHHHHHhcc
Confidence            999999998765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.60  E-value=3e-15  Score=154.07  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      ++.++||.||..|+.++++.|++.  +.+++..|.+|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||||+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g----adin~~d~~G~TpL~~  597 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA----CNVHIRDANGNTALWN  597 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC----CCCCCcCCCCCCHHHH
Confidence            445666666666666666666655  5556666666666666666666666666666655    4566666666666666


Q ss_pred             HHhcCCC
Q 041572          162 AARSVPS  168 (313)
Q Consensus       162 Aa~~~~~  168 (313)
                      |+..|+.
T Consensus       598 A~~~g~~  604 (823)
T PLN03192        598 AISAKHH  604 (823)
T ss_pred             HHHhCCH
Confidence            6666654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.58  E-value=5.9e-15  Score=139.01  Aligned_cols=130  Identities=8%  Similarity=-0.083  Sum_probs=102.6

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccc-----cCCCChHHHHHHHcCCHHH
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFS-----NEDGDDIFHAAVKHRQENV  133 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~-----d~~G~t~Lh~A~~~g~~~i  133 (313)
                      .+++++|+++ ..+++.     .++.||||.|+..|+.++++.|+++ +....+..     +..|.|++|.|+.+++.++
T Consensus       131 ~eiV~~LI~~-GADIn~-----~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        131 IDIVDFMVDH-GAVIYK-----IECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             HHHHHHHHHC-CCCCCC-----CCCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHH
Confidence            3899999999 455433     3558999999999999999999998 32233322     2347899999999999999


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +++|++.|    +++|.+|.+|.||||+|+..|+. .+...+++...++  ...|..|.||+++|.+.+
T Consensus       204 ve~LIs~G----ADIN~kD~~G~TpLh~Aa~~g~~-eiVelLL~~GAdI--N~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        204 YKLCIPYI----EDINQLDAGGRTLLYRAIYAGYI-DLVSWLLENGANV--NAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHHHHhCc----CCcCcCCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcC
Confidence            99999998    78999999999999999999987 4444555444433  344899999999998765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.58  E-value=3.5e-15  Score=125.30  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCC
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGV  156 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~  156 (313)
                      +-.|+.|.|||.||+.+|++++|++||+.  ++++...-+..+++|.+|+..|..++|++|+..+    .++|.-|.+|-
T Consensus       154 N~~De~GfTpLiWAaa~G~i~vV~fLL~~--GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~----vdVNvyDwNGg  227 (296)
T KOG0502|consen  154 NACDEFGFTPLIWAAAKGHIPVVQFLLNS--GADPDALGKYRESALSLATRGGYTDIVELLLTRE----VDVNVYDWNGG  227 (296)
T ss_pred             cCccccCchHhHHHHhcCchHHHHHHHHc--CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC----CCcceeccCCC
Confidence            33788999999999999999999999998  8889888899999999999999999999999988    79999999999


Q ss_pred             CHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhhh
Q 041572          157 NILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGL  205 (313)
Q Consensus       157 TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~l  205 (313)
                      |||-+|++.+|. .+...++....++  ...+..|.+++|+|..-....
T Consensus       228 TpLlyAvrgnhv-kcve~Ll~sGAd~--t~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  228 TPLLYAVRGNHV-KCVESLLNSGADV--TQEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             ceeeeeecCChH-HHHHHHHhcCCCc--ccccccCCcHHHHHHHhhhHH
Confidence            999999999998 4444555443333  334889999999998754433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=2.1e-15  Score=138.87  Aligned_cols=147  Identities=12%  Similarity=0.064  Sum_probs=110.6

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhcc-CCCCCch---hHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYL-NPYYPPS---IKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l-~~~~~~~---~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      -|+.+|-+||-.|+..|....--....-. +-+-...   ..-...+-..|   .+++++|++++    .+.++.|..|+
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~---leivKyLvE~g----ad~~IanrhGh  151 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGH---LEIVKYLVEHG----ADPEIANRHGH  151 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcch---hHHHHHHHHcC----CCCcccccCCC
Confidence            45778888988888777776522211111 1110000   00111111222   48999999994    34567899999


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHh
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAAR  164 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~  164 (313)
                      |.||+||.+||.+++++|++.  ++++|.++.+|+|+||.+++.|+.+++++|++++.     .-.+|..|.|||-.|+.
T Consensus       152 TcLmIa~ykGh~~I~qyLle~--gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-----~i~~d~~GmtPL~~Aa~  224 (615)
T KOG0508|consen  152 TCLMIACYKGHVDIAQYLLEQ--GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-----KIDVDGHGMTPLLLAAV  224 (615)
T ss_pred             eeEEeeeccCchHHHHHHHHh--CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc-----eeeecCCCCchHHHHhh
Confidence            999999999999999999999  89999999999999999999999999999999983     23468889999999999


Q ss_pred             cCCCC
Q 041572          165 SVPSS  169 (313)
Q Consensus       165 ~~~~~  169 (313)
                      .|+.+
T Consensus       225 tG~~~  229 (615)
T KOG0508|consen  225 TGHTD  229 (615)
T ss_pred             hcchH
Confidence            99983

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.57  E-value=3.5e-15  Score=120.99  Aligned_cols=109  Identities=18%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      -+.+|+..+....|+.||+. .+..+|.+|.+|.||||-|+.+|+.+||+.|+..+    ++.+++..+|+||||-||+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g----An~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG----ANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHcc----CCcccccccCccchhhhhcc
Confidence            46789999999999999998 89999999999999999999999999999999998    78899999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ++. .+.+.+|+...++..  ..+...||++++...+
T Consensus       141 nN~-~va~~LLqhgaDVnA--~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  141 NNF-EVAGRLLQHGADVNA--QTKGLLTPLHLAAGNR  174 (228)
T ss_pred             cch-hHHHHHHhccCcccc--cccccchhhHHhhccc
Confidence            998 666777776655433  3666789999997654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.54  E-value=1.4e-14  Score=107.96  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+||+.|+.++++.|++.  +..++.    |+||||+|+.+|+.+++++|++.+    .+++.+|.+|+||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~--~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK--GADINL----GNTALHYAAENGNLEIVKLLLENG----ADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT--TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTT----TCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHC--cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhc----ccccccCCCCCCHHHHHHHcC
Confidence            6788888888888888887  444433    778888888888888888888877    577788888888888888877


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      +.
T Consensus        71 ~~   72 (89)
T PF12796_consen   71 NL   72 (89)
T ss_dssp             HH
T ss_pred             CH
Confidence            65

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.52  E-value=7e-14  Score=137.76  Aligned_cols=130  Identities=12%  Similarity=0.027  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCc----HHHHHHHHHhhCC-CCcccccCCCChHHHH---HHHcC
Q 041572           58 TLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGI----YEIVMEIIISYFP-WSLSFSNEDGDDIFHA---AVKHR  129 (313)
Q Consensus        58 ~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~----~~~v~~Ll~~~~~-~~~~~~d~~G~t~Lh~---A~~~g  129 (313)
                      ..++++.|+++ ..+++.    +..|+||||+|+..++    .++++.|+++ ++ .+++.+|..|+||||.   |...+
T Consensus       358 ~ieIvelLIs~-GAdIN~----k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        358 SIPILRCMLDN-GATMDK----TTDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             cHHHHHHHHHC-CCCCCc----CCCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhcc
Confidence            34788899988 455553    3689999999999885    8999999998 33 2688999999999994   33332


Q ss_pred             ---------CHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcC-CCCChhhhhh
Q 041572          130 ---------QENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLND-KDKTPRELFT  199 (313)
Q Consensus       130 ---------~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~-~G~Tp~dla~  199 (313)
                               ..+++++|++.|    +++|.+|..|+||||+|+..++. .+...++....++  ...|+ .|.||++.+.
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~G----ADINakD~~G~TPLh~Aa~~~~~-eive~LI~~GAdI--N~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYM----DDIDMIDNENKTLLYYAVDVNNI-QFARRLLEYGASV--NTTSRSIINTAIQKSS  504 (672)
T ss_pred             ccccccchhHHHHHHHHHhcc----cchhccCCCCCCHHHHHHHhCCH-HHHHHHHHCCCCC--CCCCCcCCcCHHHHHH
Confidence                     235699999999    78999999999999999999876 3444444433332  33365 5999999987


Q ss_pred             H
Q 041572          200 E  200 (313)
Q Consensus       200 ~  200 (313)
                      .
T Consensus       505 ~  505 (672)
T PHA02730        505 Y  505 (672)
T ss_pred             H
Confidence            5

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.51  E-value=2.5e-14  Score=124.59  Aligned_cols=93  Identities=19%  Similarity=0.190  Sum_probs=82.2

Q ss_pred             HHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC
Q 041572           61 ILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM  140 (313)
Q Consensus        61 il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  140 (313)
                      +++.|+.+ ...++.   .+....||||+||..||.++|+.||++  .+++|..+..|+||||+||..|+..+.+-|+..
T Consensus        49 ivemll~r-garvn~---tnmgddtplhlaaahghrdivqkll~~--kadvnavnehgntplhyacfwgydqiaedli~~  122 (448)
T KOG0195|consen   49 IVEMLLSR-GARVNS---TNMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPLHYACFWGYDQIAEDLISC  122 (448)
T ss_pred             HHHHHHhc-cccccc---ccCCCCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCchhhhhhhcHHHHHHHHHhc
Confidence            47888888 344433   556678999999999999999999998  888999999999999999999999999999999


Q ss_pred             CcccccccccccCCCCCHHHHHH
Q 041572          141 PKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus       141 ~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      |    +.++..+++|.|||.-|-
T Consensus       123 g----a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  123 G----AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             c----ceeeecccCCCCchhhhc
Confidence            9    789999999999998763

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=2.7e-14  Score=97.12  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             HHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572          102 IIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus       102 Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      ||+. .+.+++.+|..|+||||+||.+|+.+++++|++.+    ++++.+|.+|+||||+|
T Consensus         1 LL~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g----~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEH-GPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG----ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCcc-CcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc----CCCCCCcCCCCCHHHhC
Confidence            4565 45788888999999999999999999999999777    78888999999999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.48  E-value=1.6e-13  Score=102.22  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      .++++.|++. ..+++.       |+||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+.+|+.+++++|+
T Consensus        10 ~~~~~~ll~~-~~~~~~-------~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   79 (89)
T PF12796_consen   10 LEILKFLLEK-GADINL-------GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNLEIVKLLL   79 (89)
T ss_dssp             HHHHHHHHHT-TSTTTS-------SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHC-cCCCCC-------CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3678888887 333321       88999999999999999999998  7889999999999999999999999999999


Q ss_pred             cCCccccccccccc
Q 041572          139 NMPKAQTFFVADID  152 (313)
Q Consensus       139 ~~~~~~~~~in~~d  152 (313)
                      +.|    +++|.+|
T Consensus        80 ~~g----~~~~~~n   89 (89)
T PF12796_consen   80 EHG----ADVNIRN   89 (89)
T ss_dssp             HTT----T-TTSS-
T ss_pred             HcC----CCCCCcC
Confidence            998    6777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=1.6e-13  Score=107.08  Aligned_cols=114  Identities=21%  Similarity=0.232  Sum_probs=92.5

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      +|.+|.||||.|++.|+.++++.|++.  +...+.+|..|.||||.|+..++.++++.|++.+    ..++..|..|.||
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~~   76 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG----ADVNARDKDGNTP   76 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCH
Confidence            457899999999999999999999998  5555788999999999999999999999999988    5778889999999


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          159 LHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      +|+|++.++. .+...+++..  ......|..|.||++.+...
T Consensus        77 l~~a~~~~~~-~~~~~L~~~~--~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          77 LHLAARNGNL-DVVKLLLKHG--ADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HHHHHHcCcH-HHHHHHHHcC--CCCcccCCCCCCHHHHHHhc
Confidence            9999999875 2222222211  11222378899999998765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.47  E-value=3.8e-13  Score=104.91  Aligned_cols=117  Identities=21%  Similarity=0.270  Sum_probs=98.6

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHH
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFT   89 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~   89 (313)
                      +|.+|.||||.|++.+..                                ++++.+++. ....   ..++..|.||||.
T Consensus         3 ~~~~g~t~l~~a~~~~~~--------------------------------~~i~~li~~-~~~~---~~~~~~g~~~l~~   46 (126)
T cd00204           3 RDEDGRTPLHLAASNGHL--------------------------------EVVKLLLEN-GADV---NAKDNDGRTPLHL   46 (126)
T ss_pred             cCcCCCCHHHHHHHcCcH--------------------------------HHHHHHHHc-CCCC---CccCCCCCcHHHH
Confidence            568899999999866543                                237777777 2322   3477899999999


Q ss_pred             HHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           90 AAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        90 Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      |+..++.++++.|++.  +..++..+..|.||+|+|+..++.+++++|++.+    ..++..|..|.||||+|...++.
T Consensus        47 a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          47 AAKNGHLEIVKLLLEK--GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             HHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCCCHHHHHHhcCCH
Confidence            9999999999999998  5567888899999999999999999999999987    57788999999999999988654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.6e-13  Score=92.65  Aligned_cols=54  Identities=24%  Similarity=0.347  Sum_probs=45.2

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      |+||||+||+.|+.++++.|++.  +.+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999998  7789999999999999999999999999986

...

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.46  E-value=1e-13  Score=116.55  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=89.7

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      +++++|++.|    .+++...+...|+|.+|++.|..++|+.||.+  ..++|..|.+|-|||-+|++.||.+|++.|++
T Consensus       174 ~vV~fLL~~G----Adp~~lgk~resALsLAt~ggytdiV~lLL~r--~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  174 PVVQFLLNSG----ADPDALGKYRESALSLATRGGYTDIVELLLTR--EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             HHHHHHHHcC----CChhhhhhhhhhhHhHHhcCChHHHHHHHHhc--CCCcceeccCCCceeeeeecCChHHHHHHHHh
Confidence            5688888884    34455666778999999999999999999998  77899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .|    ++++..|..|++++.+|++.|+.
T Consensus       248 sG----Ad~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  248 SG----ADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             cC----CCcccccccCCcHHHHHHHhhhH
Confidence            99    89999999999999999999975

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=2.3e-13  Score=121.98  Aligned_cols=133  Identities=15%  Similarity=0.073  Sum_probs=108.3

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHH-----hCcHHHHHHHHHhhCCCCcccc-cCCCChHHHHHHHcCCHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAK-----FGIYEIVMEIIISYFPWSLSFS-NEDGDDIFHAAVKHRQENV  133 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~-----~G~~~~v~~Ll~~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~i  133 (313)
                      ++++.|+..+..++|..+   +-|.||+++||.     ..+.++|..|.+.  ++ +|.+ ...|+|+|++|+.+|+.++
T Consensus       282 ~VV~~LLDSgvC~VD~qN---rAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gn-VNaKAsQ~gQTALMLAVSHGr~d~  355 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQN---RAGYTPVMLAALAKLKQPADRTVVERLFKM--GD-VNAKASQHGQTALMLAVSHGRVDM  355 (452)
T ss_pred             HHHHHHhccCcccccccc---cccccHHHHHHHHhhcchhhHHHHHHHHhc--cC-cchhhhhhcchhhhhhhhcCcHHH
Confidence            568888888889998764   689999999886     3567899999987  54 4555 4689999999999999999


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhh
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKG  204 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~  204 (313)
                      |+.|+..+    +++|.+|.+|.|+|++|+..||. .|.+.+|- ....+..-.|++|-|++.+|.+..+.
T Consensus       356 vk~LLacg----AdVNiQDdDGSTALMCA~EHGhk-EivklLLA-~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  356 VKALLACG----ADVNIQDDDGSTALMCAAEHGHK-EIVKLLLA-VPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             HHHHHHcc----CCCccccCCccHHHhhhhhhChH-HHHHHHhc-cCcccceeecCCCchhhhhHHhcCch
Confidence            99999998    89999999999999999999998 45554442 22323333399999999999997543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.43  E-value=2.3e-13  Score=139.03  Aligned_cols=179  Identities=12%  Similarity=0.048  Sum_probs=115.2

Q ss_pred             CCCCCCCCCCCccccccccCCCcchhhhhhhccCC--CCCchhHhhhhhccccHHH-----HHHHHHHHhccccccchhh
Q 041572            5 PHLHSENADGDLEKQLSETSPFAFGLYISYFYLNP--YYPPSIKSIRNTKLTHKQT-----LEILRIICVGAVDIATAAK   77 (313)
Q Consensus         5 ~~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~k~~~~~~-----~~il~~l~~~~~~~~~~~~   77 (313)
                      |.-.++-.+++.++..|++.|.....   ...++.  +......+..+.+..|..|     .++++.|.+++ .      
T Consensus         8 ~~~~~~~~~~~~~~l~A~~~g~~~~v---~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g-~------   77 (743)
T TIGR00870         8 PAEESPLSDEEKAFLPAAERGDLASV---YRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLS-C------   77 (743)
T ss_pred             CccCCCCCHHHHHHHHHHHcCCHHHH---HHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCC-C------
Confidence            33344456677888888887766552   222232  3333334445566666333     27788888773 1      


Q ss_pred             hhcCCCCcHHHHHHHh---CcHHHHHHHHHhhCCC-----Ccc----cccCCCChHHHHHHHcCCHHHHHHHHcCCcccc
Q 041572           78 ETENVLKKPMFTAAKF---GIYEIVMEIIISYFPW-----SLS----FSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQT  145 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~-----~~~----~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  145 (313)
                       ++..|.||||.|+..   +..++++.+.+. .+.     ..+    ..+..|.||||+|+.+|+.+++++|++.|    
T Consensus        78 -~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G----  151 (743)
T TIGR00870        78 -RGAVGDTLLHAISLEYVDAVEAILLHLLAA-FRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG----  151 (743)
T ss_pred             -CCCcChHHHHHHHhccHHHHHHHHHHHhhc-ccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC----
Confidence             567899999999872   222333333333 211     011    12357999999999999999999999998    


Q ss_pred             ccccccc--------------CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          146 FFVADID--------------VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       146 ~~in~~d--------------~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +++|.++              ..|.||||+|+..|+. .+...+++...  +.+..|+.|.||+++|..+.
T Consensus       152 Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~-~iv~lLl~~ga--din~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       152 ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP-SIVALLSEDPA--DILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCH-HHHHHHhcCCc--chhhHhhhhhHHHHHHHhhh
Confidence            5565543              3699999999999987 33334444333  33445889999999998763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.43  E-value=5.1e-14  Score=136.18  Aligned_cols=118  Identities=15%  Similarity=0.067  Sum_probs=99.7

Q ss_pred             hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           76 AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        76 ~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      .+.+|.+|.|+||.||.+|+.++++.|++.  ...++..|.+|.+|||+|+++|+.+++++++..+    ..+|.+..+|
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~----d~~na~~~e~  115 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT----DILNAVNIEN  115 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhccCcceEEehhhcCcchHHHHHHhcc----cCCCcccccC
Confidence            455788999999999999999999999998  6778888999999999999999999999999887    6789999999


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .||||+|++.||. .++..+++.+.+  -+.+|+.++|++|+|.+-.
T Consensus       116 ~tplhlaaqhgh~-dvv~~Ll~~~ad--p~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen  116 ETPLHLAAQHGHL-EVVFYLLKKNAD--PFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             cCccchhhhhcch-HHHHHHHhcCCC--ccccCcccccHHHHHHHhh
Confidence            9999999999998 444444444332  3344999999999998753

>PHA02730 ankyrin-like protein; Provisional

Probab=99.41  E-value=6.3e-13  Score=131.06  Aligned_cols=135  Identities=7%  Similarity=-0.085  Sum_probs=99.1

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhC---cHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcC--CHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFG---IYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHR--QENVF  134 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G---~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv  134 (313)
                      ..++..++. ..+++  +.+|++|+||||+|+.+|   +.|+|+.||++  |++++.+|..|+||||+|+..+  +.+++
T Consensus        21 ~~~~~~~~~-~~~in--~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~--GAdin~kD~~G~TPLh~Aa~~~~~~~eIv   95 (672)
T PHA02730         21 KKIKLEIET-CHNLS--KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR--GVERLCRNNEGLTPLGVYSKRKYVKSQIV   95 (672)
T ss_pred             HHHHHHHHH-hcchh--hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC--CCCCcccCCCCCChHHHHHHcCCCcHHHH
Confidence            346666666 33444  347889999999999997   59999999988  9999999999999999999976  79999


Q ss_pred             HHHHcCCcccccccccccCCCCCHHHHHHh--cCCCCCcchHHhh-hhHHhhhh---hhcCCCCChhhhhhHhh
Q 041572          135 NIIFNMPKAQTFFVADIDVKGVNILHSAAR--SVPSSEVSGAALQ-MQRELQWF---KLNDKDKTPRELFTEEH  202 (313)
Q Consensus       135 ~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~--~~~~~~i~~~~l~-~~~~l~~~---~~n~~G~Tp~dla~~~~  202 (313)
                      ++|++.|.  .+..+..|+.|++|||.++.  .++.+ +...++. ...+..-.   ..|..|.+|+.++++..
T Consensus        96 ~~Ll~~~~--~~~~~~~~~~~d~~l~~y~~s~n~~~~-~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~  166 (672)
T PHA02730         96 HLLISSYS--NASNELTSNINDFDLYSYMSSDNIDLR-LLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNP  166 (672)
T ss_pred             HHHHhcCC--CCCcccccccCCchHHHHHHhcCCcHH-HHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCC
Confidence            99999873  24568899999999999988  44432 2222332 11111100   01247899999998754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.41  E-value=2.7e-13  Score=131.26  Aligned_cols=151  Identities=13%  Similarity=0.087  Sum_probs=118.1

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      -++.+|-|+||.|+-.|....   +...++..-.-.+.+.+..+..|.+++    ++++.++.+ ..   ..+..+.+|.
T Consensus        44 ~qd~~gfTalhha~Lng~~~i---s~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q-~d---~~na~~~e~~  116 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQI---SKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ-TD---ILNAVNIENE  116 (854)
T ss_pred             ccCccchhHHHHHHhcCchHH---HHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhc-cc---CCCcccccCc
Confidence            456789999999999888766   233334444444666777888888887    899999988 33   3344677899


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccc----ccccccccCCCCCHHH
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQ----TFFVADIDVKGVNILH  160 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~----~~~in~~d~~G~TpLH  160 (313)
                      ||||.||.+||.+++.+||++  +++.-.+|++++|+|-+|++.|+.++++.|++..-..    ...-..++-.+-+|||
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~--~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKK--NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             CccchhhhhcchHHHHHHHhc--CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence            999999999999999999998  7788889999999999999999999999998763111    0112345667889999


Q ss_pred             HHHhcCCC
Q 041572          161 SAARSVPS  168 (313)
Q Consensus       161 ~Aa~~~~~  168 (313)
                      +|+++||.
T Consensus       195 laakngh~  202 (854)
T KOG0507|consen  195 LAAKNGHV  202 (854)
T ss_pred             hhhhcchH
Confidence            99999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.40  E-value=4.2e-13  Score=131.20  Aligned_cols=115  Identities=15%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccc---------cC--------------CCChHHHHHHHcCCHHHHHHH
Q 041572           81 NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFS---------NE--------------DGDDIFHAAVKHRQENVFNII  137 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~---------d~--------------~G~t~Lh~A~~~g~~~iv~~L  137 (313)
                      ..|.||||+|..+.+.++|+.|++.  +++++.+         |.              .|+.||-+||..++.+++++|
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~--gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAA--GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHc--CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            4799999999999999999999998  6665532         11              378899999999999999999


Q ss_pred             HcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          138 FNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       138 l~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ++.+    +++|++|.+|||.||..+..-.. .....+++....-.....|++|.||+-+|.+..
T Consensus       260 l~~g----Ad~~aqDS~GNTVLH~lVi~~~~-~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  260 LAHG----ADPNAQDSNGNTVLHMLVIHFVT-EMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HhcC----CCCCccccCCChHHHHHHHHHHH-HHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            9988    89999999999999998876332 222333333322112233999999999998854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.32  E-value=7.2e-12  Score=122.56  Aligned_cols=126  Identities=8%  Similarity=-0.044  Sum_probs=97.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCC--ChHHHHHHHcCCHH---HH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDG--DDIFHAAVKHRQEN---VF  134 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G--~t~Lh~A~~~g~~~---iv  134 (313)
                      +++++|+++| ....     ...+..++|.||..|+.++++.|++.  +++++.+|..|  .||||+|+..+..+   ++
T Consensus       322 eiIK~LId~G-a~~~-----r~~~~n~~~~Aa~~gn~eIVelLIs~--GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        322 NVIKCMIDEG-ATLY-----RFKHINKYFQKFDNRDPKVVEYILKN--GNVVVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             HHHHHHHHCC-Cccc-----cCCcchHHHHHHHcCCHHHHHHHHHc--CCchhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence            5666776663 2221     12356679999999999999999998  88899888775  69999988877654   57


Q ss_pred             HHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          135 NIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       135 ~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      ++|++.|    +++|.+|..|+||||+|+..++. .+...+++...  .....|+.|.||+++|..
T Consensus       394 klLIs~G----ADIN~kD~~G~TPLh~Aa~~~n~-eivelLLs~GA--DIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        394 KLCKPYI----DDINKIDKHGRSILYYCIESHSV-SLVEWLIDNGA--DINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHhcC----CccccccccCcchHHHHHHcCCH-HHHHHHHHCCC--CCCCcCCCCCCHHHHHHH
Confidence            8889998    78999999999999999998886 44444444433  334458999999999865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=5.3e-12  Score=126.97  Aligned_cols=108  Identities=14%  Similarity=-0.009  Sum_probs=86.0

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHh
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAAR  164 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~  164 (313)
                      +.|+.||..|+.+.++.|++.  +.+++.+|..|+||||+||.+|+.+++++|++.|    +++|.+|.+|+||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G----advn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG----ADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHH
Confidence            358899999999999999998  7889999999999999999999999999999998    7899999999999999999


Q ss_pred             cCCCCCcchHHhhhh-----HHhhhhhhcCCCCChhhhhh
Q 041572          165 SVPSSEVSGAALQMQ-----RELQWFKLNDKDKTPRELFT  199 (313)
Q Consensus       165 ~~~~~~i~~~~l~~~-----~~l~~~~~n~~G~Tp~dla~  199 (313)
                      .|+. .+...++...     ........+..|++|+....
T Consensus       158 ~g~~-~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        158 NGFR-EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCcH-HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9987 3333333320     01111122666777766554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.28  E-value=1.1e-11  Score=106.55  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=93.3

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC-----HHHHHHHHcCCcccccccccccC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ-----ENVFNIIFNMPKAQTFFVADIDV  153 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~in~~d~  153 (313)
                      .+..+.+++|.++..|..++++.++..  +..++.+|..|.||||+|+.+++     .+++++|++.+.. ....+.+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~-~~~~~~~~~  145 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD-LDVNNLRDE  145 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC-CCCccccCC
Confidence            556688999999999999999999988  67779999999999999999999     9999999999821 026677799


Q ss_pred             CCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          154 KGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       154 ~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +|+||||+|+..|+. .+....+......  ...|..|.|+++.+....
T Consensus       146 ~g~tpl~~A~~~~~~-~~~~~ll~~~~~~--~~~~~~g~t~l~~a~~~~  191 (235)
T COG0666         146 DGNTPLHWAALNGDA-DIVELLLEAGADP--NSRNSYGVTALDPAAKNG  191 (235)
T ss_pred             CCCchhHHHHHcCch-HHHHHHHhcCCCC--cccccCCCcchhhhcccc
Confidence            999999999999987 3333333332222  222788999999987754

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=4.9e-12  Score=85.96  Aligned_cols=48  Identities=21%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHH
Q 041572           76 AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAA  125 (313)
Q Consensus        76 ~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A  125 (313)
                      .+.+|..|.||||+||++|+.+++++|++.  +.+++.+|.+|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            345889999999999999999999999965  999999999999999997

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.26  E-value=1.2e-11  Score=115.95  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=77.2

Q ss_pred             hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           76 AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        76 ~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      .+.++..|.|.||+|+.+|..++.+.|++.  +..++.+|.+||||||.|+..|+.++.++|++++    ++++.+...|
T Consensus       191 ~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a--g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g----a~~d~~t~~g  264 (527)
T KOG0505|consen  191 LDARHARGATALHVAAANGYTEVAALLLQA--GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG----ADMDAKTKMG  264 (527)
T ss_pred             ccccccccchHHHHHHhhhHHHHHHHHHHh--ccCcccccccCCCcccHHHHhhhHhHHHHHHHhh----cccchhhhcC
Confidence            344666699999999999999999999998  8889999999999999999999999999999999    7899999999


Q ss_pred             CCHHHHHHhc
Q 041572          156 VNILHSAARS  165 (313)
Q Consensus       156 ~TpLH~Aa~~  165 (313)
                      .||+-+|...
T Consensus       265 ~~p~dv~dee  274 (527)
T KOG0505|consen  265 ETPLDVADEE  274 (527)
T ss_pred             CCCccchhhh
Confidence            9999988753

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=2.7e-11  Score=104.08  Aligned_cols=100  Identities=16%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCc-----HHHHHHHHHhhCC--CCcccccCCCChHHHHHHHcCCHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGI-----YEIVMEIIISYFP--WSLSFSNEDGDDIFHAAVKHRQEN  132 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~-----~~~v~~Ll~~~~~--~~~~~~d~~G~t~Lh~A~~~g~~~  132 (313)
                      ++++.+...+ .   +...+|.+|.||||+|+..|+     .++++.|++. ..  +..+.+|..|+||||+|+..|+.+
T Consensus        87 ~~~~~l~~~~-~---~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g~tpl~~A~~~~~~~  161 (235)
T COG0666          87 KIVKLLLASG-A---DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDAD  161 (235)
T ss_pred             HHHHHHHHcC-C---CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCCCchhHHHHHcCchH
Confidence            4455666652 2   225589999999999999999     9999999999 44  377778999999999999999999


Q ss_pred             HHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          133 VFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       133 iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      ++++|++.+    +.++.+|..|.|+||+|+..++.
T Consensus       162 ~~~~ll~~~----~~~~~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         162 IVELLLEAG----ADPNSRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             HHHHHHhcC----CCCcccccCCCcchhhhcccchH
Confidence            999999998    67888899999999999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=99.24  E-value=2.8e-11  Score=118.51  Aligned_cols=96  Identities=7%  Similarity=0.040  Sum_probs=82.1

Q ss_pred             HHHHHHHHhccccccchhhhhcCC--CCcHHHHHHHhCcH---HHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHH
Q 041572           59 LEILRIICVGAVDIATAAKETENV--LKKPMFTAAKFGIY---EIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENV  133 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~--g~tpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  133 (313)
                      .++++.|+++ ..+++.   +|.+  +.||||.|+.....   ++++.|++.  +++++.+|..|+||||+|+..++.++
T Consensus       352 ~eIVelLIs~-GADIN~---kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~--GADIN~kD~~G~TPLh~Aa~~~n~ei  425 (631)
T PHA02792        352 PKVVEYILKN-GNVVVE---DDDNIINIMPLFPTLSIHESDVLSILKLCKPY--IDDINKIDKHGRSILYYCIESHSVSL  425 (631)
T ss_pred             HHHHHHHHHc-CCchhh---hcCCCCChhHHHHHHHhccHhHHHHHHHHHhc--CCccccccccCcchHHHHHHcCCHHH
Confidence            3889999999 455543   5555  46999998776654   457888887  88899999999999999999999999


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHh
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAAR  164 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~  164 (313)
                      +++|++.|    +++|.+|..|+||||+|+.
T Consensus       426 velLLs~G----ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        426 VEWLIDNG----ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHCC----CCCCCcCCCCCCHHHHHHH
Confidence            99999998    7899999999999999986

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.24  E-value=1.6e-11  Score=89.76  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=63.6

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH  160 (313)
                      .|++|||+||-.|..+++++|+..  +++++.+|+.|-|||.-|++.||.++|++|+++|    ++...+..+|.+.+.
T Consensus        33 ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~G----Adrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNG----ADRTIHAPDGTALIE  105 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcC----cccceeCCCchhHHh
Confidence            789999999999999999999998  8889999999999999999999999999999998    455566667766553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.21  E-value=1.8e-11  Score=82.50  Aligned_cols=47  Identities=19%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          118 GDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       118 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      |+||||+|+..|+.+++++|++.+    .++|.+|.+|+||||+|+..|+.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~----~din~~d~~g~t~lh~A~~~g~~   47 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG----ADINAQDEDGRTPLHYAAKNGNI   47 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT----SGTT-B-TTS--HHHHHHHTT-H
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHccCH
Confidence            789999999999999999999988    68999999999999999999976

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.21  E-value=1.5e-11  Score=89.93  Aligned_cols=105  Identities=16%  Similarity=0.073  Sum_probs=82.3

Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      -+.|+.++|..+-|+..+..  +.++|.. ..||+|||+|+-+|+.+++++|+..|    ++++.+|+.|-|||--|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~--g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iG----A~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE--GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIG----ANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc--cccHHHH-hCCcccchHhhhcchHHHHHHHHHhc----cccCCccccCCcHHHHHHHH
Confidence            46789999999999999988  6556543 38999999999999999999999999    79999999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      ||. .....++++..+  .....-+|.+..+.+.+
T Consensus        78 GH~-~cVklLL~~GAd--rt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   78 GHR-DCVKLLLQNGAD--RTIHAPDGTALIEATEE  109 (117)
T ss_pred             hhH-HHHHHHHHcCcc--cceeCCCchhHHhhccH
Confidence            998 444555554332  11124456666665543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=2.5e-11  Score=113.35  Aligned_cols=76  Identities=24%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      |.-|+..|..|+|+.++..  -.++...+..|-|+||-|+..||.+||++|++.|    +++|+.|.+||||||+|+.++
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g----anVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFG----ANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcC----CcccCccCCCCchhhhhhhcC
Confidence            3459999999999999987  5667778899999999999999999999999999    899999999999999999998


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      +.
T Consensus       628 nv  629 (752)
T KOG0515|consen  628 NV  629 (752)
T ss_pred             ch
Confidence            76

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=7.1e-11  Score=110.41  Aligned_cols=92  Identities=15%  Similarity=0.098  Sum_probs=74.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++..+.+    +++....+.+|.|+||-|+..||.+||++||+.  +.++|..|++||||||+|+..++..+++.|++
T Consensus       564 dlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe  637 (752)
T KOG0515|consen  564 DLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAASCNNVPMCKQLVE  637 (752)
T ss_pred             HHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhhhcCchHHHHHHHh
Confidence            445554444    344445778999999999999999999999998  99999999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHH
Q 041572          140 MPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH  160 (313)
                      .|+   +..-..=.++.||..
T Consensus       638 ~Ga---avfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  638 SGA---AVFASTLSDMETAAE  655 (752)
T ss_pred             ccc---eEEeeecccccchhh
Confidence            995   333444456666643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=1.9e-10  Score=115.85  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=83.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      +.++.|++. ..+.   +.+|.+|+||||+||.+|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++
T Consensus        96 ~~vk~LL~~-Gadi---n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~  169 (664)
T PTZ00322         96 VGARILLTG-GADP---NCRDYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENGFREVVQLLSR  169 (664)
T ss_pred             HHHHHHHHC-CCCC---CCcCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHh
Confidence            567888887 3443   34788999999999999999999999998  88899999999999999999999999999998


Q ss_pred             CCc---ccccccccccCCCCCHHHHHHh
Q 041572          140 MPK---AQTFFVADIDVKGVNILHSAAR  164 (313)
Q Consensus       140 ~~~---~~~~~in~~d~~G~TpLH~Aa~  164 (313)
                      ++.   ...+..+..+..|++|+-.+..
T Consensus       170 ~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        170 HSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             CCCcccccCCCCCccccCCCCccchhhh
Confidence            821   1225677788889888876654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.96  E-value=1.5e-09  Score=106.68  Aligned_cols=162  Identities=15%  Similarity=0.100  Sum_probs=116.0

Q ss_pred             CCCCCccccccccCCCcchhhhhhhcc--CCCC-C-chh-HhhhhhccccHHHH----HHHHHHHhccccccchh-----
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYL--NPYY-P-PSI-KSIRNTKLTHKQTL----EILRIICVGAVDIATAA-----   76 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l--~~~~-~-~~~-~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~-----   76 (313)
                      ..-|+|.||.+.-....-...++-..+  .|.. . +.+ .+-++++..|.+.+    ++++.|++. ..+++..     
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~F  218 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAF  218 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccc
Confidence            456889999887643332211111111  1111 1 111 34456777887766    899999999 4554421     


Q ss_pred             ----hhhc-----------CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           77 ----KETE-----------NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        77 ----~~~d-----------~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                          +.+.           .-|..||-+||.-++.|+++.|+++  +++++.+|++|+|.||.-+.+-..++.+++++.+
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~--gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g  296 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH--GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG  296 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc--CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC
Confidence                1111           1377899999999999999999998  9999999999999999999999999999999998


Q ss_pred             cccccccccccCCCCCHHHHHHhcCCCCCcchHHhhh
Q 041572          142 KAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQM  178 (313)
Q Consensus       142 ~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~  178 (313)
                      +.  .+...++++|-|||-+||+.|.. .+....++.
T Consensus       297 a~--~l~~v~N~qgLTPLtLAaklGk~-emf~~ile~  330 (782)
T KOG3676|consen  297 AN--ALEHVRNNQGLTPLTLAAKLGKK-EMFQHILER  330 (782)
T ss_pred             CC--ccccccccCCCChHHHHHHhhhH-HHHHHHHHh
Confidence            43  34788999999999999999987 343334443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.82  E-value=2.2e-08  Score=87.77  Aligned_cols=87  Identities=10%  Similarity=-0.037  Sum_probs=77.2

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccc-ccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSF-SNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      +.+|..|.|+|..|+.+|+.+.++.||+.  ++++|. .+..+.||||.|+..|+.++.++|++.|    +.....+.-|
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~--gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG----a~~~~vNsvg  112 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLEL--GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG----ARMYLVNSVG  112 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHh--CCCcCcccccccccHHHHHHHcCCchHHHHHHhcc----Cccccccchh
Confidence            45889999999999999999999999999  666654 4678999999999999999999999999    5566677789


Q ss_pred             CCHHHHHHhcCCCC
Q 041572          156 VNILHSAARSVPSS  169 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~  169 (313)
                      .|+-..|+.-|+.+
T Consensus       113 rTAaqmAAFVG~H~  126 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHE  126 (396)
T ss_pred             hhHHHHHHHhcchH
Confidence            99999999999873

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.76  E-value=1.6e-08  Score=88.56  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=88.7

Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccc-ccCCCCCHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVAD-IDVKGVNILHSA  162 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~-~d~~G~TpLH~A  162 (313)
                      ..||.-+.-+|..+-...||+.  -..+|.+|..|.|+|..|+..|+.+++++|++.|    +++|. ++..+.||||.|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g----aDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG----ADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC----CCcCcccccccccHHHHH
Confidence            4799999999999999999987  6668999999999999999999999999999999    66765 577899999999


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      +..|+. .+....++...+  ....|.-|+|+-++|.=
T Consensus        87 ALSGn~-dvcrllldaGa~--~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   87 ALSGNQ-DVCRLLLDAGAR--MYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             HHcCCc-hHHHHHHhccCc--cccccchhhhHHHHHHH
Confidence            999997 444444443322  22238889999888753

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.70  E-value=6.6e-09  Score=104.58  Aligned_cols=144  Identities=8%  Similarity=-0.070  Sum_probs=76.2

Q ss_pred             CCCccccccccCCCcch-hhhhhhccCCCC---CchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572           13 DGDLEKQLSETSPFAFG-LYISYFYLNPYY---PPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus        13 ~g~t~l~l~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      +.+|+|.+++..|..+. |+...+=.+...   ......|...+..|..++++   |+++ -.  +.+...|+.+.|+|-
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~---llk~-ha--~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQD---LLKA-HA--DVEAQSDRTKDTMLS  829 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHH---HHhh-hh--hhhhhcccccCceEE
Confidence            45777888877776644 222222111111   01122233444444443332   2333 11  112235566666666


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccc--cCCCCCHHHHHHhcC
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADI--DVKGVNILHSAARSV  166 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~--d~~G~TpLH~Aa~~~  166 (313)
                      +||..|..++|+.||..  +.+-+.++-...|||-+|...|..+++..|+..|    ..+|.+  .+.|-.||.+|+.+|
T Consensus       830 lacsggr~~vvelLl~~--gankehrnvsDytPlsla~Sggy~~iI~~llS~G----seInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNA--GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSG----SEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             EecCCCcchHHHHHHHh--hccccccchhhcCchhhhcCcchHHHHHHHhhcc----cccccccccccCcchhhhhhhcc
Confidence            66666666666666666  5555556666666666666666666666666666    334443  345666777776666


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      |.
T Consensus       904 h~  905 (2131)
T KOG4369|consen  904 HQ  905 (2131)
T ss_pred             cc
Confidence            65

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.65  E-value=2.1e-08  Score=98.60  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCC
Q 041572           76 AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVK  154 (313)
Q Consensus        76 ~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~  154 (313)
                      .+++|.-|+|+||+|+..|..++++.||++  +.++..+| ..|+||||-|+.+|+.+++.+|++.|    ..+..+|++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g----~SL~i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG----RSLRIKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHHHHhcC----CceEEeccc
Confidence            566899999999999999999999999999  88889998 58999999999999999999999999    688999999


Q ss_pred             CCCHHHHHHhc
Q 041572          155 GVNILHSAARS  165 (313)
Q Consensus       155 G~TpLH~Aa~~  165 (313)
                      |..||..-++-
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999998874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=2.3e-08  Score=92.76  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=76.9

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      ++.++.-++.+||+.|.+..++.+.-.  +.+++.+|.+.||+||+|+..|+.+++++|++..   +.+.+.+|.+|+||
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~---kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC---KVDPDPKDRWGRTP  576 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHH---cCCCChhhccCCCc
Confidence            445667789999999999999988877  8889999999999999999999999999999865   36789999999999


Q ss_pred             HHHHHhcCCC
Q 041572          159 LHSAARSVPS  168 (313)
Q Consensus       159 LH~Aa~~~~~  168 (313)
                      |.-|...+|.
T Consensus       577 lDdA~~F~h~  586 (622)
T KOG0506|consen  577 LDDAKHFKHK  586 (622)
T ss_pred             chHhHhcCcH
Confidence            9999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.59  E-value=4.4e-08  Score=98.88  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccH----HHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHK----QTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~----~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +..+||+|.+++.-|-...   ...+++.+....-+++.+......    ...++++.|+.. ..+++- ..-.+.|-+|
T Consensus       821 drtkdt~lSlacsggr~~v---velLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~-GseInS-rtgSklgisP  895 (2131)
T KOG4369|consen  821 DRTKDTMLSLACSGGRTRV---VELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINS-RTGSKLGISP  895 (2131)
T ss_pred             ccccCceEEEecCCCcchH---HHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhc-cccccc-ccccccCcch
Confidence            5667788888775554433   233334333333334444333322    234777777777 344332 1123457778


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccc-cCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFS-NEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |.+|+.+||.+.++.|++.  +.++|.. ..+.+|+|-+|+..|+.+++.+||...    +.+..+-+.|-|||.-++..
T Consensus       896 Lmlatmngh~~at~~ll~~--gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~----anvehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  896 LMLATMNGHQAATLSLLQP--GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ----ANVEHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             hhhhhhccccHHHHHHhcc--cchhccccccccccceeeccccCcchHHHHHHHHh----hhhhhhcccCCcccchhhcC
Confidence            8888888888888888877  5555543 356777888888888888888887765    56667777888888888887


Q ss_pred             CCC
Q 041572          166 VPS  168 (313)
Q Consensus       166 ~~~  168 (313)
                      |..
T Consensus       970 Gyv  972 (2131)
T KOG4369|consen  970 GYV  972 (2131)
T ss_pred             Ccc
Confidence            764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=8.5e-08  Score=57.50  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=17.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHcCCccccccccccc
Q 041572          118 GDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID  152 (313)
Q Consensus       118 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d  152 (313)
                      |+||||+|+.+|+.+++++|++.|    ++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG----ADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT----SCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc----CCCCCCC
Confidence            555555555555555555555555    4444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=8.8e-08  Score=56.11  Aligned_cols=24  Identities=13%  Similarity=0.290  Sum_probs=12.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHcCC
Q 041572          118 GDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus       118 G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      |+||||+||.+|+.+++++|++.|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            455555555555555555555544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=1.7e-07  Score=88.30  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |+|+++.....+-....+.......++.+|..|+||||+|+.-|+.+.++.|+..+    +++..+|++|++|||.|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~----Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG----ADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC----CCccccccccccHHHHHHHc
Confidence            47777766666555443322034456667777777777777777777777777776    56677777777777777777


Q ss_pred             CCC
Q 041572          166 VPS  168 (313)
Q Consensus       166 ~~~  168 (313)
                      |+.
T Consensus        99 g~~  101 (560)
T KOG0522|consen   99 GNE  101 (560)
T ss_pred             CCH
Confidence            765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=3.1e-07  Score=85.78  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             hcCCCCc------HHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccc
Q 041572           79 TENVLKK------PMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADI  151 (313)
Q Consensus        79 ~d~~g~t------pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~  151 (313)
                      +|.+|-+      -||-.++.|+.+..--||..  ++.+|..+ .+|.||||+|++.|+..-+++|+-.|    +++++.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG----AD~~a~  196 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG----ADPGAQ  196 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhcc----CCCCCC
Confidence            5555544      69999999999999999988  77788776 68999999999999999999999999    899999


Q ss_pred             cCCCCCHHHHHHhcCCCCCcchHHhhhh
Q 041572          152 DVKGVNILHSAARSVPSSEVSGAALQMQ  179 (313)
Q Consensus       152 d~~G~TpLH~Aa~~~~~~~i~~~~l~~~  179 (313)
                      |.+|.||+.+|-+.||- .+...+++.+
T Consensus       197 d~~GmtP~~~AR~~gH~-~laeRl~e~~  223 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHH-ELAERLVEIQ  223 (669)
T ss_pred             CCCCCcHHHHHHhcCch-HHHHHHHHHH
Confidence            99999999999999997 4443344433

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.50  E-value=1.7e-07  Score=56.13  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccC
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNE  116 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~  116 (313)
                      +|+||||+||.+|+.++++.|++.  +++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH--GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT--TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC--cCCCCCCCC
Confidence            589999999999999999999998  888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=1.8e-07  Score=54.74  Aligned_cols=29  Identities=24%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcc
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLS  112 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~  112 (313)
                      +|+||||+||+.|+.|++++||+.  +.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~--gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH--GADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc--CCCCC
Confidence            489999999999999999999998  66654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.48  E-value=9.8e-08  Score=88.71  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=61.1

Q ss_pred             hhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           75 AAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        75 ~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      +.+.+|.+.+|+||+||..|+++++++|++. +..+++.+|..|+|||--|...+|.+++++|-+..
T Consensus       531 D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  531 DLETKDYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cccccccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            3455889999999999999999999999999 99999999999999999999999999999997753

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.45  E-value=4.7e-07  Score=85.85  Aligned_cols=86  Identities=23%  Similarity=0.191  Sum_probs=76.1

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCC-CcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPW-SLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGV  156 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~-~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~  156 (313)
                      +++.+..+.||+|+..|+-|+|+++|++ .|. ..+..|..|+|+||-|+..++..+..+|++.|    +.+...|..|.
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh-~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag----asl~ktd~kg~  968 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDH-GPSELLDMADETGETALHKAACQRNRAVCQLLVDAG----ASLRKTDSKGK  968 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhc-CCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc----hhheecccCCC
Confidence            3677888999999999999999999998 553 45667899999999999999999999999998    67888999999


Q ss_pred             CHHHHHHhcCCC
Q 041572          157 NILHSAARSVPS  168 (313)
Q Consensus       157 TpLH~Aa~~~~~  168 (313)
                      ||-.-|-+.|++
T Consensus       969 tp~eraqqa~d~  980 (1004)
T KOG0782|consen  969 TPQERAQQAGDP  980 (1004)
T ss_pred             ChHHHHHhcCCc
Confidence            999999888877

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.40  E-value=9.4e-08  Score=94.06  Aligned_cols=95  Identities=14%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             HHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccC-CCCCHHHHHHhcCCCCCcchHHhh
Q 041572           99 VMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDV-KGVNILHSAARSVPSSEVSGAALQ  177 (313)
Q Consensus        99 v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~-~G~TpLH~Aa~~~~~~~i~~~~l~  177 (313)
                      ++.+++..|....+.+|..|||+||+|+..++.++++.|+++|    ++++.+|. .|.||||-|...|+.+ ....+|.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhG----idv~vqD~ESG~taLHRaiyyG~id-ca~lLL~  107 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHG----IDVFVQDEESGYTALHRAIYYGNID-CASLLLS  107 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcC----ceeeeccccccchHhhHhhhhchHH-HHHHHHh
Confidence            4444444378889999999999999999999999999999999    78999997 5999999999999983 3333343


Q ss_pred             hhHHhhhhhhcCCCCChhhhhhH
Q 041572          178 MQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       178 ~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      ..+.  +...|++|..|++....
T Consensus       108 ~g~S--L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRS--LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCc--eEEecccCCCHHHHHhh
Confidence            3333  33349999999998765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.27  E-value=1.9e-06  Score=82.06  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=54.3

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCc
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPK  142 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  142 (313)
                      -+.+|+|+||+||+.|++.+.+.|+ . ++.++..+|.+|+|+|.+|-..|..+++..|++.|.
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLi-W-yg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLI-W-YGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHH-H-hCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            4557899999999999999998888 3 588888999999999999999999999999999883

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.14  E-value=3.7e-06  Score=79.93  Aligned_cols=109  Identities=20%  Similarity=0.168  Sum_probs=82.3

Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      +..|+..+..--+++.-..  +.+...++.+..+.||+|+..|+.++|++++.++.  ...+++.|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence            4567777776666666655  66677889999999999999999999999999883  3478899999999999999887


Q ss_pred             CCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          167 PSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       167 ~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +. .+....++..  ..+.+.|.+|+||.+-|.+..
T Consensus       946 ~r-~vc~~lvdag--asl~ktd~kg~tp~eraqqa~  978 (1004)
T KOG0782|consen  946 NR-AVCQLLVDAG--ASLRKTDSKGKTPQERAQQAG  978 (1004)
T ss_pred             ch-HHHHHHHhcc--hhheecccCCCChHHHHHhcC
Confidence            75 3333333222  223444999999998876644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.07  E-value=6.3e-06  Score=78.02  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      .+|..|+||||+|+..|+.+.++.|+..  ++.+..+|.+||+|||-|+..|+.+++..++.+-
T Consensus        50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   50 RRDPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             cccCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            3788999999999999999999999998  7888899999999999999999998887776543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.05  E-value=8.5e-06  Score=76.42  Aligned_cols=59  Identities=12%  Similarity=0.036  Sum_probs=53.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      .-+.|.||||+||+.|+..-++.|+-+  +++++..|.+|.||+-+|-..||.++.+-|++
T Consensus       163 hpekg~TpLHvAAk~Gq~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  163 HPEKGNTPLHVAAKAGQILQAELLAVY--GADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcccCCchhHHHHhccchhhhhHHhhc--cCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            556899999999999999999888876  99999999999999999999999988777665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.04  E-value=3.8e-06  Score=85.25  Aligned_cols=82  Identities=12%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHH
Q 041572           81 NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH  160 (313)
                      ..|.|+||.|+..|..-.++.|++.  ++.++.+|..|+||||.+...|+...+..|++++    ++.++.|.+|.+||+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~----a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRG----ADPNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhcccc----ccccccCccCcchhh
Confidence            3578999999999999999999998  8889999999999999999999999999999988    678899999999999


Q ss_pred             HHHhcCCC
Q 041572          161 SAARSVPS  168 (313)
Q Consensus       161 ~Aa~~~~~  168 (313)
                      +|....+.
T Consensus       728 ~a~~~~~~  735 (785)
T KOG0521|consen  728 IAMEAANA  735 (785)
T ss_pred             HHhhhccc
Confidence            99877544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=3e-06  Score=85.95  Aligned_cols=117  Identities=12%  Similarity=-0.040  Sum_probs=83.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      ..-.|++-+|+++..|+..+++.+++. .+......|.+|...+|+ |..++.+..-+++...   ...++.+|.+|+||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~---~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISAD---GVAIDIRDRNGWTP  644 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeec---ccccccccCCCCcc
Confidence            445789999999999999999999985 344445567888888888 6677777777776654   26789999999999


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHHhh----hhhhcCCCCChhhhhhHh
Q 041572          159 LHSAARSVPSSEVSGAALQMQRELQ----WFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~l~----~~~~n~~G~Tp~dla~~~  201 (313)
                      ||||+..|+. .+...+...+++-.    ....+-.|.|+-+++..+
T Consensus       645 L~wAa~~G~e-~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  645 LHWAAFRGRE-KLVASLIELGADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             cchHhhcCHH-HHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence            9999999987 33222222221111    111145689999988754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.76  E-value=1.6e-05  Score=80.70  Aligned_cols=114  Identities=11%  Similarity=-0.046  Sum_probs=83.3

Q ss_pred             ccccHHHHHHHHHHHhcccccc--chhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcC
Q 041572           52 KLTHKQTLEILRIICVGAVDIA--TAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHR  129 (313)
Q Consensus        52 k~~~~~~~~il~~l~~~~~~~~--~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g  129 (313)
                      ...|..+.+.-..|+++ +.+.  ......|.+|.-.+|+ |..|+.+..-+++.. .+..++.+|.+||||||+|+.+|
T Consensus       576 lllhL~a~~lyawLie~-~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~-~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEK-VIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA-DGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             HHHHHHHHHhHHHHHHH-HhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee-cccccccccCCCCcccchHhhcC
Confidence            33454454444555555 3332  1223356677778888 666778888888877 78999999999999999999999


Q ss_pred             CHHHHHHHHcCCccccc--ccccccCCCCCHHHHHHhcCCC
Q 041572          130 QENVFNIIFNMPKAQTF--FVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~--~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +..++..|++.+.....  +.+..+..|.|+--+|...|+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            99999999988754333  3344556799999999999887

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.74  E-value=4.6e-05  Score=72.87  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCc--c--cccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSL--S--FSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~--~--~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      -|..|.....+..+-.||.+  +...  +  .-+.+|+|+||+||..|+..+.++|+-.+    +++-.+|.+|+|+|.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAh--g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg----~dv~~rda~g~t~l~y  700 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAH--GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG----VDVMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC----ccceecccCCchhhhh
Confidence            56678888888888888876  4322  2  23568899999999999999999999887    7899999999999999


Q ss_pred             HHhcCCC
Q 041572          162 AARSVPS  168 (313)
Q Consensus       162 Aa~~~~~  168 (313)
                      |-+.|..
T Consensus       701 ar~a~sq  707 (749)
T KOG0705|consen  701 ARQAGSQ  707 (749)
T ss_pred             HhhcccH
Confidence            9998876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.67  E-value=9.2e-05  Score=67.60  Aligned_cols=57  Identities=11%  Similarity=0.060  Sum_probs=52.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCc
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPK  142 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  142 (313)
                      .--|..||+.|.++.|+.|++.  +.++|.+|....+||.+|+..||.++|++|+++|+
T Consensus        37 f~elceacR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            3457899999999999999998  89999999999999999999999999999999995

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.45  E-value=0.00025  Score=59.06  Aligned_cols=64  Identities=16%  Similarity=0.055  Sum_probs=59.2

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      +.+|.-|||||..||..|+.+.+.+|+.+ ..+.+...|..|.+++.+|-+.|+.+++..|.+..
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgr-g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGR-GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhcc-CcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            45899999999999999999999999999 44889999999999999999999999999998764

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.40  E-value=0.00011  Score=74.87  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChh
Q 041572          116 EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPR  195 (313)
Q Consensus       116 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~  195 (313)
                      ..|.|+||.|+..+...++++|++++    +++|.+|..|+||||.+...|+. ......+..+...  ...|.+|++|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g----a~vn~~d~~g~~plh~~~~~g~~-~~~~~ll~~~a~~--~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG----ADVNALDSKGRTPLHHATASGHT-SIACLLLKRGADP--NAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC----CcchhhhccCCCcchhhhhhccc-chhhhhccccccc--cccCccCcchh
Confidence            45799999999999999999999999    68999999999999999999988 3333333322222  22389999999


Q ss_pred             hhhhHh
Q 041572          196 ELFTEE  201 (313)
Q Consensus       196 dla~~~  201 (313)
                      +++.+.
T Consensus       727 ~~a~~~  732 (785)
T KOG0521|consen  727 DIAMEA  732 (785)
T ss_pred             hHHhhh
Confidence            998654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.29  E-value=0.00055  Score=57.09  Aligned_cols=58  Identities=10%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             CCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          108 PWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       108 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      ..++|.+|..|||+|+.|+..|+.+++.+|+..|.   +.+...|..|++++.+|-+.|..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~   59 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQ   59 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChH
Confidence            34688999999999999999999999999999984   67889999999999999999976

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.073  Score=53.84  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=54.0

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCc----------ccccCCCChHHHHHHHc
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSL----------SFSNEDGDDIFHAAVKH  128 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~----------~~~d~~G~t~Lh~A~~~  128 (313)
                      .++.+.|+++. ..         . ..+|..|...|.++.|+.++..  +...          ...-..+-|||.+||..
T Consensus        75 le~~eLLl~~~-~~---------~-gdALL~aI~~~~v~~VE~ll~~--~~~~~~~~~~~d~~~~~ft~ditPliLAAh~  141 (822)
T KOG3609|consen   75 LELQELLLDTS-SE---------E-GDALLLAIAVGSVPLVELLLVH--FVDAPYLERSGDANSPHFTPDITPLMLAAHL  141 (822)
T ss_pred             HHHHHHHhcCc-cc---------c-chHHHHHHHHHHHHHHHHHHhc--ccccchhccccccCcccCCCCccHHHHHHHh
Confidence            46677777662 11         1 3589999999999999999987  3322          12234678999999999


Q ss_pred             CCHHHHHHHHcCCc
Q 041572          129 RQENVFNIIFNMPK  142 (313)
Q Consensus       129 g~~~iv~~Ll~~~~  142 (313)
                      ++.||+++|+..|.
T Consensus       142 NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  142 NNFEILQCLLTRGH  155 (822)
T ss_pred             cchHHHHHHHHcCC
Confidence            99999999999885

>smart00248 ANK ankyrin repeats

Probab=96.39  E-value=0.006  Score=33.35  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=13.7

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHh
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIIS  105 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~  105 (313)
                      |.||+|+|+..|+.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            45566666666666666666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.23  E-value=0.0071  Score=33.01  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCC
Q 041572          117 DGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus       117 ~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      +|.||+|+|+..++.++++.|++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4789999999999999999999876

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.19  E-value=0.0028  Score=63.68  Aligned_cols=84  Identities=8%  Similarity=-0.039  Sum_probs=62.3

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccc------cccc
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTF------FVAD  150 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~------~in~  150 (313)
                      +.+|.-|+++||+|..+.+.|+++.|++.  +...       ..+|.+|+..|..++|+.++.+......      .-..
T Consensus        56 nc~d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~  126 (822)
T KOG3609|consen   56 NCRDPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSP  126 (822)
T ss_pred             hccChHhhhceecccccccHHHHHHHhcC--cccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcc
Confidence            44788899999999999999999999887  4322       5678889999999999999886531100      0012


Q ss_pred             ccCCCCCHHHHHHhcCCCC
Q 041572          151 IDVKGVNILHSAARSVPSS  169 (313)
Q Consensus       151 ~d~~G~TpLH~Aa~~~~~~  169 (313)
                      .-..+-|||.+||..++.+
T Consensus       127 ~ft~ditPliLAAh~NnyE  145 (822)
T KOG3609|consen  127 HFTPDITPLMLAAHLNNFE  145 (822)
T ss_pred             cCCCCccHHHHHHHhcchH
Confidence            2346789999999999983

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.04  E-value=0.011  Score=56.21  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=23.0

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAV  126 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~  126 (313)
                      -.|+||+|+..|..++|.+||+.  ++++..+|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Lee--g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEE--GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHh--cCCchhcccCCCCcccccc
Confidence            34555555555555555555555  3555555555555555544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.78  E-value=0.028  Score=51.84  Aligned_cols=52  Identities=13%  Similarity=0.029  Sum_probs=45.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHh
Q 041572          120 DIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAAL  176 (313)
Q Consensus       120 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l  176 (313)
                      --|..||+.|..+.|+.|++.|    ..+|.+|...+.||-+|+-.||. .+.+.++
T Consensus        38 ~elceacR~GD~d~v~~LVetg----vnVN~vD~fD~spL~lAsLcGHe-~vvklLL   89 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETG----VNVNAVDRFDSSPLYLASLCGHE-DVVKLLL   89 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhC----CCcchhhcccccHHHHHHHcCcH-HHHHHHH
Confidence            3488999999999999999988    79999999999999999999998 3433333

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.49  E-value=0.047  Score=52.00  Aligned_cols=62  Identities=10%  Similarity=-0.032  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhhCCCCc------ccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           96 YEIVMEIIISYFPWSL------SFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        96 ~~~v~~Ll~~~~~~~~------~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      ...+++|.+.  ..+.      +..|..-.|+||+|+..|..++|.++|+.+    ++...+|..|.||..++.
T Consensus       404 p~~ie~lken--~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg----~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN--LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG----CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc--CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc----CCchhcccCCCCcccccc
Confidence            4556666665  3332      233455679999999999999999999998    788899999999999887

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.55  E-value=2.9  Score=29.68  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      .-+..|...|+.|+++.+++.  .. +   +   ...+..|+...+-++++.|++.-
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~--~~-~---~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK--NK-P---D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH--hc-c---H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            467899999999999999977  21 1   1   57799999999999999999854

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.89
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.89
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.89
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.89
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.89
2rfa_A	232	Transient receptor potential cation channel subfa	99.89
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.88
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.88
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.87
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.87
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.87
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.87
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.87
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.86
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.86
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.86
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.85
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.85
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.85
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.85
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.84
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.84
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.84
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.84
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.83
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.83
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.83
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.83
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.82
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
2rfa_A	232	Transient receptor potential cation channel subfa	99.82
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.81
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.81
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.8
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.8
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.8
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.8
2etb_A	256	Transient receptor potential cation channel subfam	99.79
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.79
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.78
2pnn_A	273	Transient receptor potential cation channel subfa	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.78
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.77
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.76
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.75
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.74
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.69
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.69
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.64
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.64
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.61
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.61
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.52
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.51

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.3e-24  Score=190.71  Aligned_cols=181  Identities=12%  Similarity=0.040  Sum_probs=123.3

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +...+.+|.|||+.++..+....  +...++..+..+...+-.+.+..|.++.    ++++.|++. ..+.   ..++.+
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~--~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~---~~~~~~  118 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQK--RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANA---GARNAD  118 (269)
T ss_dssp             --------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCT---TCCCTT
T ss_pred             ccccCccCCCHHHHHHHhCCHHH--HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCc---CccCCC
Confidence            35567889999999987665432  1233445555544445555666777665    789999988 3333   447889


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |.||+|+|+..|+.++++.|++.  +.+++.+|..|+||||+||..|+.+++++|++.|    +++|.+|.+|+||||+|
T Consensus       119 g~t~l~~a~~~~~~~~~~~Ll~~--g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g----advn~~~~~g~t~Lh~A  192 (269)
T 4b93_B          119 QAVPLHLACQQGHFQVVKCLLDS--NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHEA  192 (269)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT----CCTTCBCTTSCBHHHHH
T ss_pred             CCCccccccccChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCCCccccCCCcHHHHH
Confidence            99999999999999999999998  8889999999999999999999999999999998    78999999999999999


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +..|+. .+...+++...+  ....|++|+||+++|.++.
T Consensus       193 ~~~g~~-~~v~~Ll~~Gad--~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          193 VIEKHV-FVVELLLLHGAS--VQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHTTCH-HHHHHHHHTTCC--SCCCCTTSCCSGGGSCTTC
T ss_pred             HHcCCH-HHHHHHHHCCCC--CCCcCCCCCCHHHHHHhCC
Confidence            999987 444455544333  3344999999999997654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=4.4e-24  Score=188.08  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=141.3

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCc
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKK   85 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~t   85 (313)
                      .|.+|.||||.|+..+....   ..++++.+..+...+....+..|.++.    ++++.|++++...   .+.+|..|.|
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t  126 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDA---AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD---LDARMHDGTT  126 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC---TTCCCTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---ccccCCCCCc
Confidence            47899999999999987765   233334444444444455566666654    7899999883212   3447889999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|++.
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          127 PLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG----ANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             HHHHHHHHTCSSHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHC
Confidence            99999999999999999998  8889999999999999999999999999999998    78999999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |+. .+...+++...+  ....|..|+||+++|.++..
T Consensus       201 ~~~-~~v~~Ll~~ga~--~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          201 GSY-ETAKVLLDHFAN--RDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             TCH-HHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTC
T ss_pred             CCH-HHHHHHHHcCCC--ccccccCCCCHHHHHHHcCC
Confidence            987 344444443333  33348999999999988654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=1.1e-23  Score=175.35  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=111.6

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++++ .++   +.+|.+|+||||+|+..|+.++++.|++.  +.+++.+|.+|+||||+|+.+|+.+++++|++
T Consensus        18 ~~v~~Ll~~G-adv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~   91 (169)
T 4gpm_A           18 DRVKDLIENG-ADV---NASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLIS   91 (169)
T ss_dssp             HHHHHHHHTT-CCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCC-CCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            6789999983 443   45889999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .|    +++|.+|.+|+||||+|++.|+. .+...+++...  +....|++|+||+++|.+..
T Consensus        92 ~g----advn~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           92 KG----ADVNAKDSDGRTPLHHAAENGHK-EVVKLLISKGA--DVNTSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTT
T ss_pred             Cc----CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCC--CccccCCCCCCHHHHHHHcC
Confidence            98    78999999999999999999987 34444444333  33444999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.89  E-value=2.6e-24  Score=191.02  Aligned_cols=115  Identities=13%  Similarity=-0.009  Sum_probs=64.2

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccC-CCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNE-DGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      +|..|.||||+|+..|+.++++.|++.  +..++.++. .|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+|
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t  227 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG----ADPTARMYGGRT  227 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC----CCCcccccCCCC
Confidence            456677777777777777777777776  556666664 3777777777777777777777766    566777777777


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |||+|++.|+. .+...+++...+  ....|++|.||++.+....
T Consensus       228 pL~~A~~~~~~-~~v~~Ll~~ga~--~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          228 PLGSALLRPNP-ILARLLRAHGAP--EPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHTSSCH-HHHHHHHHTTCC--CCCCC--------------
T ss_pred             HHHHHHHcCCc-HHHHHHHHcCCC--cCcCCCcccccccccCCcc
Confidence            77777777665 233333332222  2233667777777766544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=4.5e-24  Score=175.50  Aligned_cols=154  Identities=17%  Similarity=0.142  Sum_probs=120.0

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      ..|.+|+|+|+.|++.+....                                ++.|++.+....   +..+..|+||||
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~--------------------------------v~~ll~~~~~~~---~~~~~~g~t~L~   47 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVET--------------------------------VKKLCTVQSVNC---RDIEGRQSTPLH   47 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHH--------------------------------HHHHCCTTTTTC---CCTTTTCCCHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHH--------------------------------HHHHHHcCCCCc---cccccCCCCHHH
Confidence            356777888888876654433                                677766522122   236778999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    +++|.+|.+|+||||+|+..|+.
T Consensus        48 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~  121 (165)
T 3twr_A           48 FAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG----AVVNVADLWKFTPLHEAAAKGKY  121 (165)
T ss_dssp             HHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC----CCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999998  7889999999999999999999999999999998    78999999999999999999987


Q ss_pred             CCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhhhh
Q 041572          169 SEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLV  206 (313)
Q Consensus       169 ~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~l~  206 (313)
                       .+...+++..  ......|.+|.||+++|.+.+.++.
T Consensus       122 -~~v~~Ll~~g--a~~~~~~~~g~t~l~~a~~~~~~i~  156 (165)
T 3twr_A          122 -EICKLLLQHG--ADPTKKNRDGNTPLDLVKDGDTDIQ  156 (165)
T ss_dssp             -HHHHHHHHTT--CCTTCCCTTSCCTGGGSCTTCHHHH
T ss_pred             -HHHHHHHHcC--CCCcccCCCCCChhHhHhcCChHHH
Confidence             3434444432  2334459999999999987555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=1.6e-23  Score=176.65  Aligned_cols=149  Identities=9%  Similarity=-0.005  Sum_probs=122.0

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      .+|.+|.||||.|+..+....                                ++.|+++ ...+   +.+|..|+||||
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~--------------------------------v~~Ll~~-~~~~---~~~~~~g~t~L~   73 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENA--------------------------------IDKLVEN-FDKL---EDKDIEGSTALI   73 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGG--------------------------------HHHHHHH-HCCT---TCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHH--------------------------------HHHHHHh-cccc---ccccccCccHHH
Confidence            467788888888887654433                                7777777 3333   347788999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.
T Consensus        74 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~  147 (192)
T 2rfm_A           74 WAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG----ANVNDRNLEGETPLIVASKYGRS  147 (192)
T ss_dssp             HHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999  7788999999999999999999999999999998    78999999999999999999987


Q ss_pred             CCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          169 SEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       169 ~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                       .+...+++..  ......|..|.||+++|....
T Consensus       148 -~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          148 -EIVKKLLELG--ADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             -HHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTT
T ss_pred             -HHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhC
Confidence             3333444332  233444889999999998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.89  E-value=1.1e-23  Score=182.06  Aligned_cols=180  Identities=15%  Similarity=0.064  Sum_probs=133.3

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ...|.+|.||||.|+..+....   ..++++.+..+..++....+..|.++.    ++++.|+++ ..+.   +.+|..|
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~---~~~~~~g  106 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEI---VEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHV---NAVNQNG  106 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHH---HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCT---TCCCTTS
T ss_pred             hcCCCCCCCHHHHHHHcCcHHH---HHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCC---CCCCCCC
Confidence            3457889999999998886655   222233333333333344455555543    788888888 3433   3467889


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    +++|.+|.+|+||||+|+
T Consensus       107 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~  180 (231)
T 3aji_A          107 CTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK----ASTNIQDTEGNTPLHLAC  180 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----CCccccCCCCCCHHHHHH
Confidence            9999999999999999999988  7788888999999999999999999999999988    688899999999999999


Q ss_pred             hcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          164 RSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       164 ~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      ..++. .+...+++...  .....|..|+||+++|.+.+.
T Consensus       181 ~~~~~-~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          181 DEERV-EEAKFLVTQGA--SIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HTTCH-HHHHHHHHTTC--CSCCCCTTSCCHHHHSCHHHH
T ss_pred             HCCCH-HHHHHHHHCCC--CCCCCCCCCCCHHHHHHhhHH
Confidence            99886 33334443322  233448899999999976544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=2.5e-23  Score=173.24  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=93.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.++++ ..++   +.+|.+|+||||+||+.|+.++++.|++.  +.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        51 ~~~~~ll~~-gad~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~  124 (169)
T 4gpm_A           51 EVVKLLISK-GADV---NAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLIS  124 (169)
T ss_dssp             HHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhc-ccch---hhhccCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            347777877 3333   44789999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQ  177 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~  177 (313)
                      .+    ++++.+|.+|+||||+|++.|+. .+...+++
T Consensus       125 ~g----ad~~~~d~~G~TpL~~A~~~g~~-~iv~~Ll~  157 (169)
T 4gpm_A          125 KG----ADVNTSDSDGRTPLDLAREHGNE-EVVKLLEK  157 (169)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHT
T ss_pred             cC----CCccccCCCCCCHHHHHHHcCCH-HHHHHHHH
Confidence            98    78999999999999999999987 34344443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.89  E-value=2.8e-23  Score=178.54  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=139.0

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCc
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKK   85 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~t   85 (313)
                      .|.+|.||||.|++.+....   ..++++.+..+...+....+..|.++.    ++++.|++++...   .+.++..|.|
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t   94 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDA---AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD---LDARMHDGTT   94 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC---TTCCCTTCCC
T ss_pred             cCCCCCchHHHHHHcCCHHH---HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCc
Confidence            47899999999999988765   233334443333334444555566553    8899999883112   2347889999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|++.
T Consensus        95 ~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A           95 PLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG----ANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHc--CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCcCHHHHHHHc
Confidence            99999999999999999998  7888999999999999999999999999999998    78899999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |+. .+...+++...+  ....|..|.||+++|.+...
T Consensus       169 ~~~-~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          169 GSY-ETAKVLLDHFAN--RDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             TCH-HHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTC
T ss_pred             CCH-HHHHHHHHcCCC--CccccccCCCHHHHHHHhcc
Confidence            987 333344443322  33348899999999987653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.89  E-value=2e-23  Score=181.28  Aligned_cols=181  Identities=12%  Similarity=0.019  Sum_probs=97.9

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      ..|.+|.||||.|+..+....   ..++++.+..+...+....+..|.++.    ++++.|++.+....-+.+.+|..|.
T Consensus        41 ~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  117 (241)
T 1k1a_A           41 IYNNLRQTPLHLAVITTLPSV---VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  117 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             cccccCCCHHHHHHHcCCHHH---HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCC
Confidence            345555666666655554433   111222222222222222333333332    5566665552110002233556677


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      ||||+|+..|+.++++.|++.  +..++.+| ..|+||||+|+.+|+.+++++|++.+    +++|.+|.+|+||||+|+
T Consensus       118 t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~  191 (241)
T 1k1a_A          118 TALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG----ANVNAQMYSGSSALHSAS  191 (241)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHH
Confidence            777777777777777777766  55556666 56777777777777777777777766    566677777777777777


Q ss_pred             hcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          164 RSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       164 ~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ..|+. .+...+++...  .....|..|+||+++|.+.
T Consensus       192 ~~~~~-~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          192 GRGLL-PLVRTLVRSGA--DSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             HHTCH-HHHHHHHHTTC--CTTCCCTTSCCTTTTCSSH
T ss_pred             HcCCH-HHHHHHHhcCC--CCCCcCCCCCCHHHHHHhc
Confidence            77665 23233333222  2223366777777777654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.89  E-value=1.8e-23  Score=184.13  Aligned_cols=182  Identities=15%  Similarity=0.078  Sum_probs=91.6

Q ss_pred             CCCCCCCCccccccccCCCcch----------hhhhhhccCCCCCchh-HhhhhhccccHHHH----HHHHHHHhccccc
Q 041572            8 HSENADGDLEKQLSETSPFAFG----------LYISYFYLNPYYPPSI-KSIRNTKLTHKQTL----EILRIICVGAVDI   72 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~----------~~~~~~~l~~~~~~~~-~~~~~~k~~~~~~~----~il~~l~~~~~~~   72 (313)
                      -.+|.+|.||||.|+.+|....          ..+...++..+..... .+..+.+..|.++.    ++++.|++++ .+
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~   82 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-AD   82 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            4578999999999999873211          1111222222221111 12233344455443    6777777762 32


Q ss_pred             cchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc
Q 041572           73 ATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID  152 (313)
Q Consensus        73 ~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d  152 (313)
                      .   +.+|..|+||||+|+..|+.++++.|++. .+..++.+|..|+||||+|+..|+.+++++|++.+    +++|.+|
T Consensus        83 ~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d  154 (253)
T 1yyh_A           83 A---NIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVD  154 (253)
T ss_dssp             T---TCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT----CCTTCBC
T ss_pred             C---CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC----CCCCCcC
Confidence            2   33566777777777777777777777776 44466777777777777777777777777777776    5677777


Q ss_pred             CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          153 VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       153 ~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      .+|+||||+|+..|+. .+...+++...+  ....|..|.||+++|.+.
T Consensus       155 ~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNV-DAAVVLLKNGAN--KDMQNNREETPLFLAARE  200 (253)
T ss_dssp             TTSCBHHHHHHHHTCH-HHHHHHHHTTCC--TTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCH-HHHHHHHHcCCC--CCCcCCCCCCHHHHHHHC
Confidence            7777777777777765 233333332222  223367777777777654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.89  E-value=2.4e-23  Score=179.38  Aligned_cols=180  Identities=12%  Similarity=0.034  Sum_probs=134.3

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCC--CCchh-HhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPY--YPPSI-KSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~--~~~~~-~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      ..|.+|.||||.|+..+......   +.++.+  ..... .+....+..|.++.    ++++.|+++ ....+ .+.+|.
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~---~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~-~~~~~~  105 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITS---FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPD-LNKITN  105 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHH---HHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCC-TTCCCT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHH---HHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc-cccCCc
Confidence            47889999999999988766522   222333  11111 22334445555543    789999988 31111 233778


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      .|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+.   +++|.+|.+|+||||+
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC---CCSCCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc---ccccCcCCCCCCHHHH
Confidence            899999999999999999999998  88899999999999999999999999999999873   5789999999999999


Q ss_pred             HHhcCCCCCcchHHh-hhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          162 AARSVPSSEVSGAAL-QMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       162 Aa~~~~~~~i~~~~l-~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |+..|+. .+...++ +.  ..+....|++|+||+++|.+.
T Consensus       181 A~~~~~~-~~v~~Ll~~~--ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          181 ALAEGHG-DAAVLLVEKY--GAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHTTCH-HHHHHHHHHH--CCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHcCCH-HHHHHHHHhc--CCCCCccCCCCCcHHHHHHHH
Confidence            9999987 3333333 22  223334489999999999653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.89  E-value=4.4e-23  Score=179.00  Aligned_cols=152  Identities=12%  Similarity=0.006  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhc
Q 041572            5 PHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETE   80 (313)
Q Consensus         5 ~~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d   80 (313)
                      .++-.+|.+|.||||.|+..|.....   .++++.+......+..+.+..|.++.    ++++.|+++ ....+   .+|
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~---~~~   74 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDIC---HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVD---PKD   74 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHH---HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCC---CCC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHH---HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCC---CCC
Confidence            34556666677777777666655431   11222222222112222233333332    555666555 22222   244


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHH
Q 041572           81 NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILH  160 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH  160 (313)
                      ..|.||||+|+..|+.++++.|++. .+..++..|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~  149 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG----SDINIRDNEENICLH  149 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTT-TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCccCCCCCCHHH
Confidence            4555555555555555555555555 33455555555555555555555555555555555    345555555555555


Q ss_pred             HHHhcCCC
Q 041572          161 SAARSVPS  168 (313)
Q Consensus       161 ~Aa~~~~~  168 (313)
                      +|+..|+.
T Consensus       150 ~A~~~~~~  157 (237)
T 3b7b_A          150 WAAFSGCV  157 (237)
T ss_dssp             HHHHHCCH
T ss_pred             HHHHCCCH
Confidence            55555544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.89  E-value=3e-23  Score=179.60  Aligned_cols=180  Identities=13%  Similarity=-0.006  Sum_probs=133.4

Q ss_pred             CCCccccccccCCCcchhhhhhhccCC-CCCchhHhhhhhccccHHHH----HHHHHHHhccccccc--hhhhhcCCCCc
Q 041572           13 DGDLEKQLSETSPFAFGLYISYFYLNP-YYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIAT--AAKETENVLKK   85 (313)
Q Consensus        13 ~g~t~l~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~--~~~~~d~~g~t   85 (313)
                      .|+||||.|++.|....   ...+++. +.....++..+.+..|.++.    ++++.|++++ ....  ....+|.+|+|
T Consensus         2 ~g~t~L~~A~~~g~~~~---v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t   77 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQA---LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQT   77 (232)
T ss_dssp             CTTCHHHHHHHTTCHHH---HHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTTTCC
T ss_pred             CCCCHHHHHHHcCCHHH---HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCCCcC
Confidence            58999999999887655   2223332 33333344455556666654    8899999883 3332  11346789999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccC-------------CCChHHHHHHHcCCHHHHHHHHcCCccccccccccc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNE-------------DGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID  152 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~-------------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d  152 (313)
                      |||+|+..|+.++++.|++.  +.+++.++.             .|+||||+|+..|+.+++++|++.|    +++|.+|
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d  151 (232)
T 2rfa_A           78 ALHIAVINQNVNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG----ADIRAQD  151 (232)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT----CCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCC
Confidence            99999999999999999998  777777665             7999999999999999999999998    7899999


Q ss_pred             CCCCCHHHHHHhcCCCCCcc---hHHhhhhHHhh----hhhhcCCCCChhhhhhHhh
Q 041572          153 VKGVNILHSAARSVPSSEVS---GAALQMQRELQ----WFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       153 ~~G~TpLH~Aa~~~~~~~i~---~~~l~~~~~l~----~~~~n~~G~Tp~dla~~~~  202 (313)
                      .+|+||||+|+..++.+.+.   ..+++......    ....|++|.||+++|.+..
T Consensus       152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            99999999999999873211   22222221110    0234889999999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.88  E-value=4.5e-23  Score=178.92  Aligned_cols=182  Identities=12%  Similarity=0.083  Sum_probs=143.7

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +-..|.+|.||||.|+..+....   ..++++.+..+...+....+..|.++.    ++++.|++++....   +.+|..
T Consensus        37 ~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~  110 (237)
T 3b7b_A           37 IDTCSEDQRTPLMEAAENNHLEA---VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV---NCQDDG  110 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHH---HHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT---TCCCTT
T ss_pred             cCccCCCCCCHHHHHHHhCCHHH---HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc---ccCCCC
Confidence            45578899999999999887655   334445555444444555566666654    89999998831232   347788


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |.||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|..|+||||+|
T Consensus       111 g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A  184 (237)
T 3b7b_A          111 GWTPMIWATEYKHVDLVKLLLSK--GSDINIRDNEENICLHWAAFSGCVDIAEILLAAK----CDLHAVNIHGDSPLHIA  184 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT----CCTTCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHH
Confidence            99999999999999999999998  7888999999999999999999999999999998    78999999999999999


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      ++.++. .+...+++...  .....|++|+||+++|....+
T Consensus       185 ~~~~~~-~~v~~Ll~~ga--d~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          185 ARENRY-DCVVLFLSRDS--DVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             HHTTCH-HHHHHHHTTTC--CTTCCCTTSCCHHHHSCTTCH
T ss_pred             HHhCCH-hHHHHHHHcCC--CCCccCCCCCCHHHHHHHHHH
Confidence            999987 33334444333  233449999999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=9e-23  Score=179.53  Aligned_cols=155  Identities=16%  Similarity=0.078  Sum_probs=118.9

Q ss_pred             CCCCCCccccccccC---CCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchh--------hh
Q 041572           10 ENADGDLEKQLSETS---PFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAA--------KE   78 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~--------~~   78 (313)
                      +|.+|.||||.|+..   +....                                ++.|++.+ ...+..        ..
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~--------------------------------v~~Ll~~g-~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNAC--------------------------------IMPLLQID-KDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTT--------------------------------HHHHHHHH-HHTTCSSCGGGCCCCS
T ss_pred             CCCCCCCHHHHHHHccccchHHH--------------------------------HHHHHhcC-Ccccchhhhccccccc
Confidence            789999999999976   44433                                66666662 222210        11


Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCC-------------CChHHHHHHHcCCHHHHHHHHc---CCc
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNED-------------GDDIFHAAVKHRQENVFNIIFN---MPK  142 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~-------------G~t~Lh~A~~~g~~~iv~~Ll~---~~~  142 (313)
                      +|..|+||||+|+..|+.++++.|++.  +.+++.+|..             |+||||+|+..|+.+++++|++   .+ 
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-  162 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-  162 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-
Confidence            456799999999999999999999998  7888888876             9999999999999999999999   77 


Q ss_pred             ccccccccccCCCCCHHHHHHhcCCCC-C-------cchHHhhhhHHhhh-----hhhcCCCCChhhhhhHhhh
Q 041572          143 AQTFFVADIDVKGVNILHSAARSVPSS-E-------VSGAALQMQRELQW-----FKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       143 ~~~~~in~~d~~G~TpLH~Aa~~~~~~-~-------i~~~~l~~~~~l~~-----~~~n~~G~Tp~dla~~~~~  203 (313)
                         +++|.+|.+|+||||+|+..++.. .       +...+++...++..     ...|.+|.||+++|.+...
T Consensus       163 ---a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          163 ---ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             ---CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             ---CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence               789999999999999999944321 1       33344443333310     4459999999999988653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.88  E-value=8.1e-23  Score=177.66  Aligned_cols=178  Identities=15%  Similarity=0.061  Sum_probs=120.5

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCC----CchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYY----PPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      .|.+|.||||.|+..|......   .++....    .....+..+.+..|.++.    ++++.|++++ .+.   +.+|.
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~---~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~---~~~~~   76 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTM---EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDP---ELRDF   76 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSS---CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCS---CCCCT
T ss_pred             CCCCCCchhHHHHHcCChhHHH---HHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCC---CCcCC
Confidence            5778889999888888765421   1222111    112223334455555553    7888888773 333   33677


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCC-----CCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccC-CC
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFP-----WSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDV-KG  155 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~-----~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~-~G  155 (313)
                      .|+||||+|+..|+.++++.|++. +.     ..++..|..|+||||+|+.+|+.+++++|++.+    ++++.+|. +|
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~g  151 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG----ADVNAQEPCNG  151 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCC
Confidence            888999999999999999888887 42     225677888889999999999999999888887    67888887 88


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +||||+|+..|+. .+...+++...  .....|..|.||+++|.+..
T Consensus       152 ~tpL~~A~~~~~~-~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          152 RTALHLAVDLQNP-DLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             CCHHHHHHHTTCH-HHHHHHHTTTC--CSCCCCTTCCCGGGGCTTSS
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHcCC--CCCcccCCCCCHHHHHHccC
Confidence            8999999888876 34444444322  23344888889988887653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=6e-23  Score=169.05  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=119.1

Q ss_pred             CCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHHHHH
Q 041572           13 DGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTAAK   92 (313)
Q Consensus        13 ~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~   92 (313)
                      +|.||||.|+..|....                                ++.|++. ...   .+.+|..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~--------------------------------v~~ll~~-~~~---~~~~~~~g~t~L~~A~~   45 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLY--------------------------------LATRIEQ-ENV---INHTDEEGFTPLMWAAA   45 (167)
T ss_dssp             TTCCCHHHHHHTTCHHH--------------------------------HHHHHHH-SSC---TTCCCTTSCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHH--------------------------------HHHHHHc-CCC---cCCCCCCCCCHHHHHHH
Confidence            57889999887765433                                7778777 333   34478899999999999


Q ss_pred             hCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcc
Q 041572           93 FGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVS  172 (313)
Q Consensus        93 ~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~  172 (313)
                      .|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+. .+.
T Consensus        46 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~-~~v  118 (167)
T 3v31_A           46 HGQIAVVEFLLQN--GADPQLLGKGRESALSLACSKGYTDIVKMLLDCG----VDVNEYDWNGGTPLLYAVHGNHV-KCV  118 (167)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCCCTTSCCHHHHHHHTTCH-HHH
T ss_pred             CCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC----CCCCcCCCCCCCHHHHHHHcCCH-HHH
Confidence            9999999999998  7888999999999999999999999999999988    78999999999999999999987 333


Q ss_pred             hHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          173 GAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       173 ~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ..+++..  ......|.+|.||+++|.+..
T Consensus       119 ~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A          119 KMLLESG--ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             HHHHHTT--CCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHcC--CCCCCcCCCCCCHHHHHHHcC
Confidence            3444332  223334889999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.88  E-value=5.1e-23  Score=182.67  Aligned_cols=180  Identities=14%  Similarity=0.055  Sum_probs=122.1

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCC---chhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhc
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYP---PSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETE   80 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d   80 (313)
                      -..|++|.||||.|++.|.......   +++.+..   ...++..+.+..|.++.    ++++.|+++ ..++   +.+|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~---~~~~   75 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDF---LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGV---LVAE   75 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHH---HHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCS---SCCC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHH---HHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC---CCCC
Confidence            4578999999999999887765222   1111111   11222334455565554    788888887 3433   3367


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhhCCC----------------------------------------------Ccccc
Q 041572           81 NVLKKPMFTAAKFGIYEIVMEIIISYFPW----------------------------------------------SLSFS  114 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~----------------------------------------------~~~~~  114 (313)
                      ..|+||||+|+..|+.++++.|++. .+.                                              .++.+
T Consensus        76 ~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (282)
T 1oy3_D           76 RGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE  154 (282)
T ss_dssp             TTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred             CCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence            7888888888888888888888875 221                                              25567


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCC-CCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCC
Q 041572          115 NEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVK-GVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKT  193 (313)
Q Consensus       115 d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~-G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~T  193 (313)
                      |..|+||||+|+..|+.+++++|++.+    ++++.+|.. |+||||+|++.|+. .+...+++..  ......|.+|.|
T Consensus       155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~g--ad~~~~d~~g~t  227 (282)
T 1oy3_D          155 NYDGHTPLHVAVIHKDAEMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAA-SVLELLLKAG--ADPTARMYGGRT  227 (282)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTSCC
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcCHHHHHHHcCCH-HHHHHHHHcC--CCCcccccCCCC
Confidence            778888888888888888888888877    677777754 88888888888876 3333444332  223334788888


Q ss_pred             hhhhhhHhh
Q 041572          194 PRELFTEEH  202 (313)
Q Consensus       194 p~dla~~~~  202 (313)
                      |+++|.+..
T Consensus       228 pL~~A~~~~  236 (282)
T 1oy3_D          228 PLGSALLRP  236 (282)
T ss_dssp             HHHHHHTSS
T ss_pred             HHHHHHHcC
Confidence            888887643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=5.3e-23  Score=178.86  Aligned_cols=185  Identities=12%  Similarity=0.080  Sum_probs=145.8

Q ss_pred             CCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhcccccc---chhhh
Q 041572            6 HLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIA---TAAKE   78 (313)
Q Consensus         6 ~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~---~~~~~   78 (313)
                      ++-..|.+|.||||+|+..+....   ..++++.+..+...+..+.+..|.++.    ++++.|++.+ ...   ...+.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~  112 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEI---AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC-TTPHLHSILKA  112 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHH---HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHST-TTTSSSCGGGC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHH---HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhHHHHhhc
Confidence            456778999999999999987655   455566666665556666777777764    8999999883 321   12345


Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccC-CCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNE-DGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      +|..|.||||+|+..|+.++++.|++.  +.+++.+|. .|+||||+|+..|+.+++++|++.|    ++++.+|..|.|
T Consensus       113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t  186 (236)
T 1ikn_D          113 TNYNGHTCLHLASIHGYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYS  186 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT----CCSCCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcccCCCCC
Confidence            788999999999999999999999999  888899997 9999999999999999999999998    789999999999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |||+|+..|+. .+...+++...+......|.+|+||.|...+.
T Consensus       187 pl~~A~~~~~~-~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          187 PYQLTWGRPST-RIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             GGGGCTTSSCH-HHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHccCch-HHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            99999999987 44445555444333334488999999876543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.87  E-value=1.6e-22  Score=168.64  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=108.8

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.+++++..   +.+.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        19 ~~v~~ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (179)
T 3f6q_A           19 VAVRLWLDNTEN---DLNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ   93 (179)
T ss_dssp             HHHHHHHHCTTS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCcc---cccccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            447788777222   2344788999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      .+    +++|.+|.+|+||||+|+..|+. .+...+++...  .....|.+|.||+++|.+...
T Consensus        94 ~g----~~~~~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           94 YK----ADINAVNEHGNVPLHYACFWGQD-QVAEDLVANGA--LVSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTC--CSSBCCTTSCCGGGGSCHHHH
T ss_pred             cC----CCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHCCC--CcchhccCCCCcHHHHHHHHH
Confidence            98    78999999999999999999987 33334444322  233348999999999987543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.87  E-value=2e-22  Score=177.60  Aligned_cols=118  Identities=12%  Similarity=0.024  Sum_probs=96.8

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc--------------CCCChHHHHHHHcCCHHHHHHHHc---CC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN--------------EDGDDIFHAAVKHRQENVFNIIFN---MP  141 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~---~~  141 (313)
                      +|..|+||||+||..|+.++++.|++.  +.+++.+|              ..|+||||+|+..|+.+++++|++   .+
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            456899999999999999999999998  78888888              689999999999999999999999   77


Q ss_pred             cccccccccccCCCCCHHHHHHhcCCCC--------CcchHHhhhhHHhhh-----hhhcCCCCChhhhhhHhh
Q 041572          142 KAQTFFVADIDVKGVNILHSAARSVPSS--------EVSGAALQMQRELQW-----FKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       142 ~~~~~~in~~d~~G~TpLH~Aa~~~~~~--------~i~~~~l~~~~~l~~-----~~~n~~G~Tp~dla~~~~  202 (313)
                          +++|.+|.+|+||||+|++.++..        .+...+++...++..     ...|.+|.||+++|.+..
T Consensus       167 ----a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          167 ----ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             ----CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence                789999999999999999888731        122233333233211     335899999999998865

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.87  E-value=2.7e-22  Score=165.95  Aligned_cols=130  Identities=15%  Similarity=0.077  Sum_probs=107.1

Q ss_pred             HHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC
Q 041572           61 ILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM  140 (313)
Q Consensus        61 il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  140 (313)
                      +++.+++++ ..  ..+.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.
T Consensus        17 ~v~~ll~~~-~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (172)
T 3v30_A           17 QLKEHLRKG-DN--LVNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLASTGGYTDIVGLLLER   91 (172)
T ss_dssp             HHHHHHTTC-SG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHcC-cc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHc
Confidence            377777773 21  2344788999999999999999999999998  788899999999999999999999999999999


Q ss_pred             CcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          141 PKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       141 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +    ++++.+|.+|+||||+|+..|+. .+...+++..  ......|.+|.||+++|....
T Consensus        92 g----~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           92 D----VDINIYDWNGGTPLLYAVRGNHV-KCVEALLARG--ADLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             T----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHT
T ss_pred             C----CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcC--CCccccCCCCCCHHHHHHHhC
Confidence            8    78999999999999999999987 3334444432  233344889999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.4e-22  Score=180.13  Aligned_cols=187  Identities=11%  Similarity=0.009  Sum_probs=132.0

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhc-cCCCCCch----hHhhhhhccccHHH-------HHHHHHHHhccccccch-
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFY-LNPYYPPS----IKSIRNTKLTHKQT-------LEILRIICVGAVDIATA-   75 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~-l~~~~~~~----~~~~~~~k~~~~~~-------~~il~~l~~~~~~~~~~-   75 (313)
                      ..|.+|.|+||.|++.|.......+... .+.+....    .++..+.+..|.++       .++++.|++++ ...+. 
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g-a~~~~~   86 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA-RKTDSL   86 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH-HHTTCH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh-ccccch
Confidence            4688899999999999887653322221 11111100    12233445556655       37899999883 32111 


Q ss_pred             -------hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccC--------------CCChHHHHHHHcCCHHHH
Q 041572           76 -------AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNE--------------DGDDIFHAAVKHRQENVF  134 (313)
Q Consensus        76 -------~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~--------------~G~t~Lh~A~~~g~~~iv  134 (313)
                             ...+|..|+||||+|+..|+.++++.|++.  +.+++.+|.              .|+||||+|+..|+.+++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                   011566899999999999999999999998  788888887              799999999999999999


Q ss_pred             HHHHc---CCcccccccccccCCCCCHHHHHHhcCCCC--------CcchHHhhhhHHhhh-----hhhcCCCCChhhhh
Q 041572          135 NIIFN---MPKAQTFFVADIDVKGVNILHSAARSVPSS--------EVSGAALQMQRELQW-----FKLNDKDKTPRELF  198 (313)
Q Consensus       135 ~~Ll~---~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~--------~i~~~~l~~~~~l~~-----~~~n~~G~Tp~dla  198 (313)
                      ++|++   .+    +++|.+|.+|+||||+|+..|+..        .+...+++...++..     ...|.+|.||+++|
T Consensus       165 ~~Ll~~~~~g----ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          165 KFLLQNSWQP----ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHCSSCC----CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHhcccCC----CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            99999   77    789999999999999999988741        122223333223221     12488999999999


Q ss_pred             hHhh
Q 041572          199 TEEH  202 (313)
Q Consensus       199 ~~~~  202 (313)
                      .+..
T Consensus       241 ~~~g  244 (273)
T 2pnn_A          241 ASSG  244 (273)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            8764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.87  E-value=1.3e-22  Score=164.94  Aligned_cols=130  Identities=16%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++++ ...+    .|..|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        16 ~~v~~Ll~~g-~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   88 (153)
T 1awc_B           16 DEVRILMANG-APFT----TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             HHHHHHHHHT-CCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcC-CCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH
Confidence            5588888883 3322    577899999999999999999999998  78889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      .+    +++|.+|.+|+||||+|+..|+. .+...+++..  ......|..|.||+++|.+...
T Consensus        89 ~g----~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           89 HG----ADVNAKDMLKMTALHWATEHNHQ-EVVELLIKYG--ADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cC----CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcC--CCccccCCCCCCHHHHHHHcCC
Confidence            98    78999999999999999999987 3333444332  2333448899999999987643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.87  E-value=1.7e-22  Score=173.99  Aligned_cols=178  Identities=15%  Similarity=-0.004  Sum_probs=131.0

Q ss_pred             CCccccccccCCCcchhhhhhhccCCCCCch-hHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572           14 GDLEKQLSETSPFAFGLYISYFYLNPYYPPS-IKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus        14 g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      |+||||.|++.|.......   +++.+.... ..+..+.+..|.++.    ++++.|+++ ....+....+|..|+||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQE---LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHH---HHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHH---HHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCCCHHH
Confidence            7899999999887655222   111111111 122233445555553    899999998 4444443337789999999


Q ss_pred             HHHHhCcHHHHHHHHHhhC-CCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCC
Q 041572           89 TAAKFGIYEIVMEIIISYF-PWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVP  167 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~-~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  167 (313)
                      +|+..|+.++++.|++. . +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+
T Consensus        78 ~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~  152 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG----ASVRIKDKFNQIPLHRAASVGS  152 (228)
T ss_dssp             HHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC----CCccccCCCCCCHHHHHHHcCC
Confidence            99999999999999998 2 2778889999999999999999999999999998    7899999999999999999998


Q ss_pred             CCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          168 SSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       168 ~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      . .+...+++.. .......|.+|.||+++|.+..
T Consensus       153 ~-~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~~  185 (228)
T 2dzn_A          153 L-KLIELLCGLG-KSAVNWQDKQGWTPLFHALAEG  185 (228)
T ss_dssp             H-HHHHHHHTTT-CCCSCCCCTTSCCHHHHHHHTT
T ss_pred             H-HHHHHHHhcC-cccccCcCCCCCCHHHHHHHcC
Confidence            7 3333333332 0222334889999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.87  E-value=3.3e-22  Score=169.13  Aligned_cols=179  Identities=9%  Similarity=-0.030  Sum_probs=131.6

Q ss_pred             CCCCccccccccCCCcchhhhhhhccCCCC-CchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcH
Q 041572           12 ADGDLEKQLSETSPFAFGLYISYFYLNPYY-PPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus        12 ~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      ..+.|+||.|+..+.....   ..++..+. .....+..+.+..|.++.    ++++.|+++ ..+.   +.+|..|+||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v---~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~---~~~~~~g~t~   75 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKV---KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADI---NLQNSISDSP   75 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHH---HHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCT---TCCCTTSCCH
T ss_pred             cccccHHHHHHHhccHHHH---HHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC---CCCCCCCCCH
Confidence            4578888888887766552   22222221 222223334445555543    789999998 3433   4478899999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+|+..|+.++++.|++. .+..++.+|..|+||||+|+..|+.+++++|++.+.   .+++.+|.+|+||||+|+..+
T Consensus        76 l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           76 YLYAGAQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC---CCTTCCCTTSCCHHHHHHHSS
T ss_pred             HHHHHHcCCHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcCCCCCCCCCHHHHHHHhc
Confidence            9999999999999999977 688899999999999999999999999999999873   578999999999999999988


Q ss_pred             CCC----CcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          167 PSS----EVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       167 ~~~----~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      +..    .+...+++..  ......|.+|.||+++|.+...
T Consensus       152 ~~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENG--ADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             CCSHHHHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             cchhhHHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCC
Confidence            731    2222333322  2233348899999999987643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=1.2e-22  Score=182.35  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCCh
Q 041572          115 NEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTP  194 (313)
Q Consensus       115 d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp  194 (313)
                      +..|+||||+|+.+|+.+++++|++.+    +++|.+|.+|+||||+|+..|+. .+...+++...+  ....|..|+||
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~d~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~gad--~~~~d~~g~t~  268 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKE-EACRILVENLCD--MEAVNKVGQTA  268 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCC--TTCCCTTSCCT
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHhcCCH-HHHHHHHHcCCC--CCCcCCCCCCH
Confidence            456889999999999999999999998    78999999999999999999987 344444444333  33449999999


Q ss_pred             hhhhhHhhhhhh
Q 041572          195 RELFTEEHKGLV  206 (313)
Q Consensus       195 ~dla~~~~~~l~  206 (313)
                      +++|.+...+.+
T Consensus       269 l~~A~~~~~~~l  280 (299)
T 1s70_B          269 FDVADEDILGYL  280 (299)
T ss_dssp             TTSCCSGGGHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999987654443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=180.39  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=81.0

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +..+|.+|.||||.|+..|....   ...+++.+......+..+.+..|.++.    ++++.|+++ ..++   +.+|.+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~---~~~~~~  124 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLS---LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQV---NGVTAD  124 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHH---HHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCS---SCCCTT
T ss_pred             ccCCCccCCCHHHHHHHcCCHHH---HHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCC---CCCCCC
Confidence            34567777777777777766544   222223333333333334444454443    666666666 2322   224555


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |+||||+|+..|+.++++.|++.  +..++. +..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYG----GNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTT----CCTTCCBTTTBCHHHHH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHH
Confidence            66666666666666666666655  333332 233666666666666666666666555    45555666666666666


Q ss_pred             HhcCCC
Q 041572          163 ARSVPS  168 (313)
Q Consensus       163 a~~~~~  168 (313)
                      +..|+.
T Consensus       198 ~~~~~~  203 (285)
T 3d9h_A          198 CENQQR  203 (285)
T ss_dssp             HHTTCH
T ss_pred             HHcCcH
Confidence            665554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.86  E-value=4.1e-22  Score=172.95  Aligned_cols=182  Identities=12%  Similarity=0.036  Sum_probs=132.3

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhh-ccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYF-YLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ..|++|.||||.|++.|.......... ....+......+..+.+..|.++.    ++++.|++++ ...   +.+|..|
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~---~~~~~~g   79 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASP---MALDRHG   79 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCT---TCCCTTS
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCc---cccCCCC
Confidence            468999999999999988765222211 111222222233334455565553    8899999883 333   3468899


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCC---CcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc-CCCCCHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPW---SLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-VKGVNIL  159 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~---~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-~~G~TpL  159 (313)
                      +||||+|+..|+.++++.|++. .+.   .++.+|..|+||||+|+..|+.+++++|++.+    .+++.+| ..|.|||
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~~g~t~L  154 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG----ADIDAVDIKSGRSPL  154 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTTCCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC----CCcccccccCCCcHH
Confidence            9999999999999999999998 431   67888999999999999999999999999988    6788888 8899999


Q ss_pred             HHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          160 HSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |+|++.|+. .+...+++..  ......|.+|.||+++|....
T Consensus       155 ~~A~~~~~~-~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          155 IHAVENNSL-SMVQLLLQHG--ANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             HHHHHTTCH-HHHHHHHHTT--CCTTCBCTTSCBHHHHHHHHT
T ss_pred             HHHHHcCCH-HHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcC
Confidence            999999987 3333444332  223344889999999997654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.86  E-value=2.4e-22  Score=166.15  Aligned_cols=131  Identities=17%  Similarity=0.106  Sum_probs=109.6

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..++   +.+|..|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        28 ~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  101 (169)
T 2y1l_E           28 DEVRILMAN-GADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK  101 (169)
T ss_dssp             HHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            568889888 3443   34788999999999999999999999998  78889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      .+    ++++.+|.+|+||||+|++.|+. .+...+++..  ......|..|.||+++|.+...
T Consensus       102 ~g----~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E          102 NG----ADVNANDMEGHTPLHLAAMFGHL-EIVEVLLKNG--ADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cC----CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhCC
Confidence            98    78999999999999999999987 3333444332  2233448899999999987643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=4.3e-22  Score=188.43  Aligned_cols=114  Identities=14%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      +|..|+||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+|..|+||
T Consensus       274 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~  347 (437)
T 1n11_A          274 GNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSP  347 (437)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT----CCTTCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC----CCCCCCCCCCCCH
Confidence            455566666666666666666666655  5555556666666666666666666666666655    4556666666666


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          159 LHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ||+|++.|+. .+...+++...  .....|.+|+||+++|.+.
T Consensus       348 L~~A~~~g~~-~iv~~Ll~~ga--~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          348 LHQAAQQGHT-DIVTLLLKNGA--SPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             HHHHHHTTCH-HHHHHHHHTTC--CSCCCCSSSCCHHHHHHHT
T ss_pred             HHHHHHCChH-HHHHHHHHCcC--CCCCCCCCCCCHHHHHHHc
Confidence            6666666654 22222332221  1222255666666666554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.86  E-value=5.8e-22  Score=180.90  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=74.8

Q ss_pred             CCCCcHHHHHHHh---CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           81 NVLKKPMFTAAKF---GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        81 ~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      ..|.||||+|+..   +..++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+|..|+|
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~n~~d~~g~t  282 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRK--GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG----AKMNALDSLGQT  282 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCC
Confidence            3455555555555   335555555555  5556667777777888888777777777777777    677777777888


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhhhhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVK  207 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~l~~  207 (313)
                      |||+|+..|+. .+...+++...+  ....|.+|.||++++.+.-.+++.
T Consensus       283 ~L~~A~~~~~~-~~v~~Ll~~gad--~~~~~~~g~tal~~a~~~~~~~l~  329 (351)
T 3utm_A          283 ALHRAALAGHL-QTCRLLLSYGSD--PSIISLQGFTAAQMGNEAVQQILS  329 (351)
T ss_dssp             HHHHHHHHTCH-HHHHHHHHTTCC--TTCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHHHHHcCcH-HHHHHHHHcCCC--CCCcCCCCCChhhhhhHHHHHHHH
Confidence            88888777776 333333333222  223377788888877655444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=2.2e-22  Score=186.17  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=133.0

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccc-cchhhh---
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDI-ATAAKE---   78 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~-~~~~~~---   78 (313)
                      +-.+|.+|.||||+|+..|........   ++.+...  ......+..|.++.    ++++.|++.+ .. -...+.   
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~L---l~~g~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~  119 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYL---ASVGEVH--SLWHGQKPIHLAVMANKTDLVVALVEGA-KERGQMPESLLN  119 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHH---HHHCCCC--CCBTTBCHHHHHHHTTCHHHHHHHHHHH-HHHTCCHHHHHT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHH---HHCCCCc--cccCCCCHHHHHHHcCCHHHHHHHHHhc-cccCCCHHHHHh
Confidence            345678888888888888776552222   1211110  11123334444443    6777777761 11 112222   


Q ss_pred             --------------hcCCCCcHHHHHHHhC--cHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCc
Q 041572           79 --------------TENVLKKPMFTAAKFG--IYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPK  142 (313)
Q Consensus        79 --------------~d~~g~tpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  142 (313)
                                    +|..|.||||+|+..|  +.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             CCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             hcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                          7789999999999999  99999999999  88899999999999999999999999999999873


Q ss_pred             c-cccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          143 A-QTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       143 ~-~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      . ...++|.+|.+|+||||+|+..|+. .+...+++...+  ....|.+|.||+++|.+..
T Consensus       198 ~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~gad--~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          198 SKSSLRLDYANKQGNSHLHWAILINWE-DVAMRFVEMGID--VNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             CSSSCCTTCCCTTCCCTTHHHHTTTCH-HHHHHHHTTTCC--TTCCCTTSCCHHHHHHHTC
T ss_pred             ccccccccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhC
Confidence            2 1223899999999999999999987 444445544333  3344899999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.86  E-value=3.8e-22  Score=178.49  Aligned_cols=152  Identities=14%  Similarity=0.088  Sum_probs=103.3

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHH
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      -..|.+|.||||.|+..+....                                ++.|++.+....   +.+|..|.|||
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~--------------------------------v~~Ll~~g~~~~---~~~~~~g~tpL  149 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPV--------------------------------VQQLLDSGVCKV---DKQNRAGYSPI  149 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHH--------------------------------HHHHHHTSCCCT---TCCCTTSCCHH
T ss_pred             cCCCCCCCCHHHHHHHCCCHHH--------------------------------HHHHHHCCCCcC---CCCCCCCCCHH
Confidence            3568889999999987765443                                667776631122   33667777888


Q ss_pred             HHHH-----HhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           88 FTAA-----KFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        88 h~Aa-----~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |+|+     ..|+.++++.|++.  +...+..|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||||+|
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g----ad~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACE----ADVNVQDDDGSTALMCA  223 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHH
Confidence            8777     66777777777777  5666667777788888888888888888887777    67777777888888888


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +..|+. .+...+++. ...+....|++|.||+++|.+..
T Consensus       224 ~~~g~~-~iv~~Ll~~-~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          224 CEHGHK-EIAGLLLAV-PSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             HHHTCH-HHHHHHHTS-TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHCCCH-HHHHHHHhc-CCCCCcCcCCCCCCHHHHHHHcC
Confidence            877775 333333320 12222333777788888777653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=2.6e-22  Score=163.23  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=105.4

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++..   .+.+.+|..|+||||+ |..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        16 ~~v~~ll~~~~---~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   89 (156)
T 1bd8_A           16 QEVRRLLHREL---VHPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTGFLDTLKVLVE   89 (156)
T ss_dssp             HHHHHHHHTTC---CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhC---cCccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            44777776611   1234478889999999 999999999999998  88899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .|    +++|.+|.+|+||||+|++.|+. .+...+++.   ......|.+|.||+++|.+..
T Consensus        90 ~g----~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A           90 HG----ADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAE---SDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             TT----CCSCCCCTTSCCHHHHHHHHTCH-HHHHHHHTT---SCTTCCCTTSCCHHHHHHHSC
T ss_pred             cC----CCCCCcCCCCCcHHHHHHHhChH-HHHHHHHhc---cCCCCcCCCCCCHHHHHHHcC
Confidence            88    78999999999999999999987 333344433   233444889999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=175.89  Aligned_cols=176  Identities=14%  Similarity=0.040  Sum_probs=124.2

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +-..|.+|.||||+|+..+....   ..++++.+......+....+..|.++.    ++++.|+++ ....+    .+.+
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~----~~~~  156 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSC---VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQ----PESD  156 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHH---HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSS----CSCT
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHH---HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCC----CCCC
Confidence            44567788888888888877655   223333344333344445555666554    788888887 33332    2345


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSA  162 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~A  162 (313)
                      |.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    +++| +|..|+||||+|
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~-~~~~g~t~L~~A  229 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQRACVKKLLESG----ADVN-QGKGQDSPLHAV  229 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT----CCTT-CCBTTBCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC----CCCC-CCCCCCCHHHHH
Confidence            88888888888888888888887  7778888888888888888888888888888887    5666 378888888888


Q ss_pred             HhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          163 ARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       163 a~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      ++.++. .+...+++.  ..+....|++|+||+++|.+
T Consensus       230 ~~~~~~-~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          230 VRTASE-ELACLLMDF--GADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HHTTCH-HHHHHHHHT--TCCTTCCCTTSCCGGGGSCT
T ss_pred             HHcCCH-HHHHHHHHC--CCCCCCcCCCCCCHHHHhcC
Confidence            888876 333344433  22334448888888888874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.85  E-value=1e-21  Score=162.46  Aligned_cols=165  Identities=12%  Similarity=-0.038  Sum_probs=114.5

Q ss_pred             CCccccccccCCCcchhhhhhhccCCCCC-chhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572           14 GDLEKQLSETSPFAFGLYISYFYLNPYYP-PSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus        14 g~t~l~l~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      +.||||.|+..|....   ...++..+.. ....+....+..|.++.    ++++.|++++ .+.   +.+|..|+||||
T Consensus         2 ~~~~L~~A~~~g~~~~---v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~---~~~~~~g~t~L~   74 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQ---LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADP---HILAKERESALS   74 (172)
T ss_dssp             --CCHHHHHHTTCHHH---HHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCT---TCCCTTCCCHHH
T ss_pred             chhhHHHHHHcCCHHH---HHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCc---hhhcccCCCHHH
Confidence            4567777777766554   2222222211 11122233344454443    7899999883 333   447889999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|++.|+.
T Consensus        75 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           75 LASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG----ADLTTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             HHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHhCcH
Confidence            99999999999999998  8889999999999999999999999999999998    78999999999999999999987


Q ss_pred             CCcchHHhhhhHHhhhhhhcCCCCCh
Q 041572          169 SEVSGAALQMQRELQWFKLNDKDKTP  194 (313)
Q Consensus       169 ~~i~~~~l~~~~~l~~~~~n~~G~Tp  194 (313)
                       .+...+++..  ......|..|.||
T Consensus       149 -~~~~~L~~~~--~~~~~~~~~~~~p  171 (172)
T 3v30_A          149 -KVQQVIENHI--LKLFQSNLVPADP  171 (172)
T ss_dssp             -HHHHHHHHHH--HHHSCC-------
T ss_pred             -HHHHHHHHHH--HHHhcccCCCCCC
Confidence             3333333332  2334447777776

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.85  E-value=3.1e-22  Score=163.66  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=104.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..+.   +.+|..|+||||+|+. |+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        19 ~~v~~Ll~~-~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   91 (162)
T 1ihb_A           19 EQLTSLLQN-NVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE   91 (162)
T ss_dssp             HHHHHHTTS-CCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCc---cccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            458888877 3333   3477889999999999 999999999998  78889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .+    +++|.+|.+|+||||+|++.|+. .+...+++.... .....|..|.||+++|.+..
T Consensus        92 ~g----~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           92 FQ----ADVNIEDNEGNLPLHLAAKEGHL-RVVEFLVKHTAS-NVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHSCC-CTTCCCTTSCCHHHHHHHTT
T ss_pred             cC----CCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHccCC-CCCCcCCCCCcHHHHHHHcC
Confidence            88    78899999999999999999987 333333332221 02333888999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.85  E-value=2.3e-22  Score=184.20  Aligned_cols=151  Identities=13%  Similarity=0.064  Sum_probs=111.1

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHH
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFT   89 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~   89 (313)
                      .|.+|.||||.|+..|..                                ++++.|++++ .++   +.+|.+|+||||+
T Consensus       127 ~d~~g~TpLh~Aa~~g~~--------------------------------~~v~~Ll~~G-ad~---n~~d~~g~TpLh~  170 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANL--------------------------------ELVKHLVKHG-SNR---LYGDNMGESCLVK  170 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCH--------------------------------HHHHHHHHTT-CCT---TBCCTTCCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCH--------------------------------HHHHHHHHcC-CCC---CCcCCCCCCHHHH
Confidence            577788888887766543                                4488888883 433   3478889999999


Q ss_pred             HHHhCc---HHHHHHHHHhhCCCCcccccCCCChHHHHHHH----cCCHHHHHHHHcCCcc-------------------
Q 041572           90 AAKFGI---YEIVMEIIISYFPWSLSFSNEDGDDIFHAAVK----HRQENVFNIIFNMPKA-------------------  143 (313)
Q Consensus        90 Aa~~G~---~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~----~g~~~iv~~Ll~~~~~-------------------  143 (313)
                      |+..|+   .++++.|++. ....++.+|..|+||||+|+.    .|+.+++++|++.+..                   
T Consensus       171 A~~~g~~~~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~  249 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES  249 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred             HHHhcccccHHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccC
Confidence            999888   6788888887 456788889999999999998    8899999988865310                   


Q ss_pred             -c---------------------ccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          144 -Q---------------------TFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       144 -~---------------------~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                       .                     +.++|.+|.+|+||||+|++.|+. .+...+++...+  ....|++|+||+++|.+
T Consensus       250 ~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~Gad--~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI-SIVDALLDYGAD--PFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             ----------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH-HHHHHHHHTTCC--TTCCCTTSCCGGGGTCC
T ss_pred             CcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC--CcccCCCCCCHHHHHHh
Confidence             0                     004788889999999999999887 344444443333  33448889999998865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=1.2e-21  Score=156.31  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=100.1

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      .+|.+|+||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK----ALVNTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CcccCcCCCCCC
Confidence            3788999999999999999999999998  7888999999999999999999999999999998    789999999999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |||+|++.|+. .+...+++..  ......|.+|.||+++|.+..
T Consensus        79 ~L~~A~~~~~~-~~v~~Ll~~g--a~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           79 PLHDAAKNGHV-DIVKLLLSYG--ASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTSCCGGGGCCCHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHcC--CCCCCCCCCCCCHHHHHhhcc
Confidence            99999999987 3434444332  233444999999999997654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.85  E-value=6.3e-22  Score=157.88  Aligned_cols=121  Identities=9%  Similarity=0.027  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCC
Q 041572            5 PHLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus         5 ~~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      +++...|.+|.||||.|++.+...                                +++.|+++ ..++   +.+|..|+
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~--------------------------------~v~~Ll~~-g~~~---~~~~~~g~   46 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVE--------------------------------TVRQLLEA-GADP---NALNRFGR   46 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHH--------------------------------HHHHHHHT-TCCT---TCCCTTCC
T ss_pred             CCccCCCCCCccHHHHHHHcCCHH--------------------------------HHHHHHHc-CCCc---CCcCCCCC
Confidence            356778888999999988765433                                37778777 3333   34678899


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCC-CChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNED-GDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      ||||+|+. |+.++++.|++.  +.+++.+|.. |+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+
T Consensus        47 t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~  119 (136)
T 1d9s_A           47 RPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG----ARLDVCDAWGRLPVDLAE  119 (136)
T ss_dssp             TTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC----CCCCCCSSSSSCHHHHHH
T ss_pred             CHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHH
Confidence            99999999 999999999988  7778888888 899999999999999999999888    678889999999999999


Q ss_pred             hcCCC
Q 041572          164 RSVPS  168 (313)
Q Consensus       164 ~~~~~  168 (313)
                      +.++.
T Consensus       120 ~~~~~  124 (136)
T 1d9s_A          120 EQGHR  124 (136)
T ss_dssp             HHTCH
T ss_pred             HcCCH
Confidence            88875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=2e-21  Score=171.95  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=99.7

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcH
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +..|.||||.|+..+....   ..+.++.+..+...+....+..|.++.    ++++.|+++ ..+.   +.+|..|+||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~---~~~~~~g~t~  108 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDI---VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADV---NECDFYGFTA  108 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCT---TCBCTTCCBH
T ss_pred             CCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC---CccCcccCCH
Confidence            6677788888887776554   222223333333333334444454442    667777776 2332   2355667777


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccc----------cCCCChHHHHHHHcCCHHHHHHHHcC-CcccccccccccCCC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFS----------NEDGDDIFHAAVKHRQENVFNIIFNM-PKAQTFFVADIDVKG  155 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~----------d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~in~~d~~G  155 (313)
                      ||+|+..|+.++++.|++.  +..++.+          +..|+||||+|+..|+.+++++|++. +    .+++.+|..|
T Consensus       109 L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g  182 (285)
T 1wdy_A          109 FMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG----ADVNACDNMG  182 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC----CCTTCCCTTS
T ss_pred             HHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcC----CCCCccCCCC
Confidence            7777777777777777766  4445544          56667777777777777777777665 4    4566666667


Q ss_pred             CCHHHHHHhcCCCCC---cchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          156 VNILHSAARSVPSSE---VSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~---i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      +||||+|+..++...   +...+++.  .......|..|.||+++|.+.
T Consensus       183 ~t~l~~a~~~~~~~~~~~i~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          183 RNALIHALLSSDDSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHT--TCCSSCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHccccchHHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHc
Confidence            777777766665311   11122221  222223355666666666554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.84  E-value=7.9e-22  Score=183.76  Aligned_cols=185  Identities=11%  Similarity=0.070  Sum_probs=139.3

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +-..|.+|.||||+|+..+....   ..++++.+..+...+....+..|.++.    ++++.|+++ .....+.+.+|..
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~i---v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~  234 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRL---VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRN  234 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHH---HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTT
T ss_pred             CcCCCCCCCCHHHHHHHcChHHH---HHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCC
Confidence            34568899999999999887765   333334444444444445556666654    889999887 2111123447889


Q ss_pred             CCcHHHHHHHhC---cHHHHHHHHHhhCCCCccc--------ccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccc
Q 041572           83 LKKPMFTAAKFG---IYEIVMEIIISYFPWSLSF--------SNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADI  151 (313)
Q Consensus        83 g~tpLh~Aa~~G---~~~~v~~Ll~~~~~~~~~~--------~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~  151 (313)
                      |.||||+|+..|   +.++++.|++.  +..++.        +|..|+||||+|+..|+.+++++|++.+.   +++|.+
T Consensus       235 g~t~L~~A~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---~~~n~~  309 (373)
T 2fo1_E          235 GMTALMIVAHNEGRDQVASAKLLVEK--GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG---SNKDKQ  309 (373)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC---CCTTCC
T ss_pred             CCCHHHHHHHhCCcchHHHHHHHHHC--CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC---CCccCc
Confidence            999999999998   99999999998  666654        67799999999999999999999997652   688999


Q ss_pred             cCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          152 DVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       152 d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |.+|+||||+|+..|+. .+...+++...  .....|..|.||+++|.+...
T Consensus       310 d~~g~TpL~~A~~~g~~-~iv~~Ll~~ga--d~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          310 DEDGKTPIMLAAQEGRI-EVVMYLIQQGA--SVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CTTCCCHHHHHHHHTCH-HHHHHHHHTTC--CSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCCH-HHHHHHHHcCC--CccCCCCCCCCHHHHHHHcCC
Confidence            99999999999999987 34444444332  233348999999999988643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=3.5e-22  Score=163.13  Aligned_cols=145  Identities=8%  Similarity=-0.070  Sum_probs=100.8

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      ....++.|.|+||.|++.+...                                +++.|+++ ..++   +.+|..|+||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~--------------------------------~v~~Ll~~-g~~~---~~~~~~g~t~   48 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVE--------------------------------EVRALLEA-GANP---NAPNSYGRRP   48 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHH--------------------------------HHHHHHTT-TCCT---TCCCSSSCCT
T ss_pred             ccCCCccchHHHHHHHHcCCHH--------------------------------HHHHHHHc-CCCC---CCCCCCCCCH
Confidence            3456778889999888665443                                37888887 3333   3477889999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCCh-HHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDD-IFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      ||+|+ .|+.++++.|++.  +.+++.+|..|+| |||+|+..|+.+++++|++.+    +++|.+|.+|+||||+|+..
T Consensus        49 L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~  121 (156)
T 1bi7_B           49 IQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEEL  121 (156)
T ss_dssp             TTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHh
Confidence            99985 8999999999988  7888999999999 999999999999999999988    78899999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPREL  197 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dl  197 (313)
                      |+. .+...+++...+  ....|..|.||.+-
T Consensus       122 ~~~-~~v~~Ll~~ga~--~~~~~~~g~t~~~~  150 (156)
T 1bi7_B          122 GHR-DVARYLRAAAGG--TRGSNHARIDAAEG  150 (156)
T ss_dssp             TCH-HHHHHHSSCC------------------
T ss_pred             CHH-HHHHHHHHcCCC--CCccCcCcCccccc
Confidence            887 333444443333  33337788887663

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.84  E-value=8.7e-22  Score=171.58  Aligned_cols=99  Identities=11%  Similarity=0.066  Sum_probs=87.2

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..++   +.+|..|+||||+||..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        35 ~~v~~Ll~~-g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~  108 (229)
T 2vge_A           35 EVVQQAVKE-MNDP---SQPNEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHCAASCNDTVICMALVQ  108 (229)
T ss_dssp             HHHHHHHHH-SSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            448888887 3333   44788999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CCccccccccccc-CCCCCHHHHH--HhcCCC
Q 041572          140 MPKAQTFFVADID-VKGVNILHSA--ARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d-~~G~TpLH~A--a~~~~~  168 (313)
                      .+    ++++.+| .+|+||||+|  +..|+.
T Consensus       109 ~g----a~~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A          109 HG----AAIFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             TT----CCTTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             cC----CCcccccCCCCCCHHHHHHHHhcChH
Confidence            98    7888887 6999999999  777766

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.84  E-value=5.4e-21  Score=167.11  Aligned_cols=178  Identities=12%  Similarity=0.066  Sum_probs=112.3

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcH
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +..|.||||.|++.+....   ....++.+...... -......|.++.    ++++.|+++ ..+.   +.+|..|+||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~---~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~---~~~d~~g~t~   73 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKT---GSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYE-VDDP---SLPNDEGITA   73 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSC---CCCCTTSCCH
T ss_pred             CccccccCchhhhhhhHHH---HHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHc-CCCC---CCcCCCCCCH
Confidence            3469999999999877765   22233433332211 112333444443    789999988 3333   4478899999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCC-CHHHHH--H
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGV-NILHSA--A  163 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~-TpLH~A--a  163 (313)
                      ||+||..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    ++++.+|..|. ||||+|  +
T Consensus        74 L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcceecCCCCcchHHHHHHh
Confidence            9999999999999999998  8889999999999999999999999999999998    78899998887 999999  6


Q ss_pred             hcCCCCCcchHHhhhhHHhhhhh-------hcCCCCChhhhhhHhhh
Q 041572          164 RSVPSSEVSGAALQMQRELQWFK-------LNDKDKTPRELFTEEHK  203 (313)
Q Consensus       164 ~~~~~~~i~~~~l~~~~~l~~~~-------~n~~G~Tp~dla~~~~~  203 (313)
                      ..|+. .+...+++...+.....       .+..|.+|.+++.+...
T Consensus       148 ~~g~~-~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          148 EEGYT-QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             STTCC-CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhccH-HHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            77776 44445555444433211       16778999998877554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=2.3e-21  Score=154.53  Aligned_cols=118  Identities=9%  Similarity=0.108  Sum_probs=103.1

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      .+|.+|.||||.|+..+..                                ++++.|+++ ..+.   +.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~--------------------------------~~~~~Ll~~-g~~~---~~~~~~g~t~L~   48 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDI--------------------------------PSVEYLLQN-GSDP---NVKDHAGWTPLH   48 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCH--------------------------------HHHHHHHHT-TCCS---CCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHHc-CCCC---CcCCCCCCCHHH
Confidence            6789999999999876543                                337888887 3333   347889999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..+..
T Consensus        49 ~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~  122 (137)
T 3c5r_A           49 EACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG----ASRNAVNIFGLRPVDYTDDESMK  122 (137)
T ss_dssp             HHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGCCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhccHH
Confidence            99999999999999998  8889999999999999999999999999999998    78999999999999999876643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.84  E-value=2.4e-21  Score=173.99  Aligned_cols=177  Identities=13%  Similarity=0.096  Sum_probs=132.8

Q ss_pred             CCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            6 HLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         6 ~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      ++-.+|.+|.||||.|+..|.....   .++++.+..+...  .+.+..|.++.    ++++.|+++ ..++   +.+|.
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v---~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~---~~~d~   93 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLV---CTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFS-GLDD---SQFDD   93 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHH---HHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHT-TCCT---TCCCT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHH---HHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHC-CCCC---CCcCC
Confidence            3457889999999999998887652   2222332222111  23445555543    889999998 3443   34788


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCC-ChHHHHHHHcCCHHHHHHHHcCCcccccccccccC-CCCCHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDG-DDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDV-KGVNIL  159 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G-~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~-~G~TpL  159 (313)
                      .|+||||+|+..|+.++++.|++.  +.+++.+|..| +||||+|+..|+.+++++|++.+.    ..  .|. .|.|||
T Consensus        94 ~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~----~~--~~~~~g~t~L  165 (285)
T 3kea_A           94 KGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----ST--FDLAILLSCI  165 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC----TT--CCCSTHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----cc--ccccCCccHH
Confidence            999999999999999999999999  88899999999 799999999999999999999883    22  333 899999


Q ss_pred             HHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCCh-hhhhhHhh
Q 041572          160 HSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTP-RELFTEEH  202 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp-~dla~~~~  202 (313)
                      |+|+..|+. .+...+++...  .....|..|.|| +++|.+..
T Consensus       166 ~~A~~~g~~-~~v~~Ll~~ga--d~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          166 HITIKNGHV-DMMILLLDYMT--STNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHH--HTCTTCCCBCCTTHHHHHHHT
T ss_pred             HHHHHcChH-HHHHHHHHcCC--CCCcccCCCCChHHHHHHHcC
Confidence            999999987 34444444433  344458899998 99998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=173.33  Aligned_cols=178  Identities=13%  Similarity=-0.032  Sum_probs=123.0

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCch--------hHhhhhhccccHHH-----HHHHHHHHhccccccch
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPS--------IKSIRNTKLTHKQT-----LEILRIICVGAVDIATA   75 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~k~~~~~~-----~~il~~l~~~~~~~~~~   75 (313)
                      -+|.++.++|+.|+..|....   ..++++.+..+.        ..+.......+..+     .++++.|++.+ .++  
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~---v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-adv--   79 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEM---VRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG-LGV--   79 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHH---HHHHHTCC----------------------------------------CC-CCT--
T ss_pred             ccCccchhHHHHHHHcCCHHH---HHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC-CCC--
Confidence            356678899999999988765   222333322111        11111222223222     24677777773 333  


Q ss_pred             hhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           76 AKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        76 ~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                       +.+|.+|+||||+||..|+.++++.|++.  +.+++.++..|+||+|+|+..++.+++++|++.+    +++|.+|.+|
T Consensus        80 -n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g----~~~n~~d~~g  152 (269)
T 4b93_B           80 -NVTSQDGSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSN----AKPNKKDLSG  152 (269)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSCCCCTTC
T ss_pred             -CCcCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCC----CCCCCCCCCC
Confidence             45889999999999999999999999998  7888999999999999999999999999999998    7899999999


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +||||+|++.|+. .+...+++...  .....|..|.||+++|....
T Consensus       153 ~TpL~~A~~~g~~-~~v~~Ll~~ga--dvn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          153 NTPLIYACSGGHH-ELVALLLQHGA--SINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             CCHHHHHHHTTCG-GGHHHHHHTTC--CTTCBCTTSCBHHHHHHHTT
T ss_pred             CCHHHHHHHCCCH-HHHHHHHHCCC--CCCccccCCCcHHHHHHHcC
Confidence            9999999999998 44445554433  33444889999999998654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.83  E-value=6.5e-21  Score=180.34  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      ++..|.||||+|+..|+.++++.|++.  +..++..|..|+||||+|+..|+.+++++|++.+    +++|.+|..|+||
T Consensus       241 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~  314 (437)
T 1n11_A          241 ESVQGVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG----VMVDATTRMGYTP  314 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCCCSSCCCH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----ccCCCCCCCCCCH
Confidence            444555555555555555555555555  4445555555556666666555555555555555    4555566666666


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          159 LHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ||+|+..|+. .+...+++...+  ....|+.|.||+++|.+.
T Consensus       315 L~~A~~~g~~-~~v~~Ll~~gad--~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          315 LHVASHYGNI-KLVKFLLQHQAD--VNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             HHHHHHSSCS-HHHHHHHHTTCC--TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCcH-HHHHHHHhcCCC--CCCCCCCCCCHHHHHHHC
Confidence            6666666555 222233322211  222355566666666554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.83  E-value=6.2e-21  Score=164.73  Aligned_cols=178  Identities=15%  Similarity=0.067  Sum_probs=128.5

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhccccccchhhhhcCCCCc
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIATAAKETENVLKK   85 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~~~~~~~d~~g~t   85 (313)
                      ++..++|+||.|++.|........... .+.. ....+....+..|.++    .++++.|+++ ....   +.+|..|+|
T Consensus         2 e~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~---~~~~~~g~t   75 (231)
T 3aji_A            2 EGCVSNIMICNLAYSGKLDELKERILA-DKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPV---NDKDDAGWS   75 (231)
T ss_dssp             -CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCS---CCCCTTSCC
T ss_pred             CCccccchHHHHHHhCCHHHHHHHHHh-chhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCC---CCcCCCCCC
Confidence            455689999999998876552221110 0000 0111222334445544    3789999988 3433   337788999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      |||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    .+++.+|..|.||||+|+..
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHHc
Confidence            99999999999999999998  7788899999999999999999999999999988    67889999999999999999


Q ss_pred             CCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          166 VPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       166 ~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |+. .+...+++...  .....|.+|.||+++|.+..
T Consensus       150 ~~~-~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~  183 (231)
T 3aji_A          150 GNL-KMVHILLFYKA--STNIQDTEGNTPLHLACDEE  183 (231)
T ss_dssp             TCH-HHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTT
T ss_pred             CCH-HHHHHHHhcCC--CccccCCCCCCHHHHHHHCC
Confidence            987 33333333222  22334888999999997654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=162.19  Aligned_cols=183  Identities=13%  Similarity=0.083  Sum_probs=131.1

Q ss_pred             CCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            6 HLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         6 ~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      |+...|+.|.|+|+.|++.|.....   ..+++.+......+....+..|.++.    ++++.|++++ ...+  ...+.
T Consensus         1 h~~~~d~~~~~~l~~A~~~g~~~~~---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~--~~~~~   74 (240)
T 3eu9_A            1 HMTHIDDYSTWDIVKATQYGIYERC---RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVD--QLGGD   74 (240)
T ss_dssp             -CCCCSCGGGCCHHHHHHTTCHHHH---HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTT--CCBTT
T ss_pred             CccccccccchHHHHHHHcCChHHH---HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-Ccch--hhcCC
Confidence            4566788999999999998887662   22333333333333344445555543    7899999883 3332  22445


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      .|.||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||+
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~g~t~l~~  148 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG----QDVDMMDQNGMTPLMW  148 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC----CCccccCCCCCcHHHH
Confidence            689999999999999999999988  7788889999999999999999999999999988    6788999999999999


Q ss_pred             HHhcCCCCCcchHHhhhhHHhhhhhhcC-CCCChhhhhhHhh
Q 041572          162 AARSVPSSEVSGAALQMQRELQWFKLND-KDKTPRELFTEEH  202 (313)
Q Consensus       162 Aa~~~~~~~i~~~~l~~~~~l~~~~~n~-~G~Tp~dla~~~~  202 (313)
                      |+..++...+...+++...+  ....+. .|.||+++|....
T Consensus       149 a~~~~~~~~~~~~L~~~~~~--~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          149 AAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             HHHHCCSSTTHHHHHHTTCC--TTCCCTTTCCCHHHHHHHHT
T ss_pred             HHHhCChHHHHHHHHhcCCC--cchhhccCCCcHHHHHHHcC
Confidence            99877743343333332222  222243 7888888887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.83  E-value=1e-20  Score=172.55  Aligned_cols=179  Identities=12%  Similarity=0.048  Sum_probs=93.8

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENV   82 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~   82 (313)
                      +..+|.+|.||||+|+..|....   ..++++.+..+...+....+..|.++.    ++++.|+++ ..+.   +.+|..
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~---~~~~~~  123 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRI---VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACV---NAMDLW  123 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT---TCCCTT
T ss_pred             cccCCCCCCCHHHHHHHcCCHHH---HHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCC---CCCCCC
Confidence            34456677777777777665544   122222222222222233334444432    566666665 2222   224556


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccc------------------------------------------------
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFS------------------------------------------------  114 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~------------------------------------------------  114 (313)
                      |+||||+|+..|+.++++.|++.  +..++..                                                
T Consensus       124 g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  201 (351)
T 3utm_A          124 QFTPLHEAASKNRVEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE  201 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhh
Confidence            66666666666666666666665  3333322                                                


Q ss_pred             ------cCCCChHHHHHHHc---CCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhh
Q 041572          115 ------NEDGDDIFHAAVKH---RQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWF  185 (313)
Q Consensus       115 ------d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~  185 (313)
                            +..|+||||+|+..   ++.+++++|++.+    +++|.+|.+|+||||+|++.|+. .+...+++..  ....
T Consensus       202 ~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g--a~~n  274 (351)
T 3utm_A          202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG----ANVNEKNKDFMTPLHVAAERAHN-DVMEVLHKHG--AKMN  274 (351)
T ss_dssp             CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTT--CCTT
T ss_pred             cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC----CCcCCcCCCCCCHHHHHHHcCCH-HHHHHHHHCC--CCCC
Confidence                  23455666666666   3355666666665    45666666666666666666665 2222333222  1222


Q ss_pred             hhcCCCCChhhhhhHh
Q 041572          186 KLNDKDKTPRELFTEE  201 (313)
Q Consensus       186 ~~n~~G~Tp~dla~~~  201 (313)
                      ..|..|.||+++|.+.
T Consensus       275 ~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          275 ALDSLGQTALHRAALA  290 (351)
T ss_dssp             CCCTTSCCHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHc
Confidence            2366667777766654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=6.1e-21  Score=149.34  Aligned_cols=112  Identities=15%  Similarity=0.039  Sum_probs=93.7

Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHH
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNIL  159 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpL  159 (313)
                      +..|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    +++|.+|.+|+|||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCTTSCCHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCHH
Confidence            45688999999999999999999998  7788999999999999999999999999999988    78999999999999


Q ss_pred             HHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          160 HSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      |+|+..++. .+...+++...+  ....|.+|.||+++|..
T Consensus        78 ~~A~~~~~~-~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           78 LSAVYEGHV-SCVKLLLSKGAD--KTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHTCH-HHHHHHHHTTCC--TTCCCTTSCCHHHHCCC
T ss_pred             HHHHHcCCH-HHHHHHHHcCCC--CCCcCCCCCCHHHHhCC
Confidence            999999987 343444443322  33448999999999953

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.83  E-value=8.1e-21  Score=160.49  Aligned_cols=152  Identities=12%  Similarity=0.046  Sum_probs=122.2

Q ss_pred             CCCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            6 HLHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         6 ~~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      ++-..|.+|.||||.|++.+....   ..+.++.+..+...+....+..|.++.    ++++.|+++....   .+.+|.
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~  104 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEI---AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD---LNKHNR  104 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHH---HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC---TTCCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHH---HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc---cccccC
Confidence            345678899999999999887655   333334444444344444555565553    8899998652222   344788


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC-----HHHHHHHHcCCcccccccccccCCCC
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ-----ENVFNIIFNMPKAQTFFVADIDVKGV  156 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~in~~d~~G~  156 (313)
                      .|.||||+|+..|+.++++.|++. .+.+++.+|..|+||||+|+..++     .+++++|++.|    ++++.+|.+|+
T Consensus       105 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g----a~~~~~~~~g~  179 (201)
T 3hra_A          105 YGGNALIPAAEKGHIDNVKLLLED-GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG----ADQSIKDNSGR  179 (201)
T ss_dssp             TSCCSHHHHHHTTCHHHHHHHHHH-CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT----CCTTCCCTTSC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC----CCCCccCCCCC
Confidence            999999999999999999999999 558899999999999999999998     99999999998    78999999999


Q ss_pred             CHHHHHHhcCCC
Q 041572          157 NILHSAARSVPS  168 (313)
Q Consensus       157 TpLH~Aa~~~~~  168 (313)
                      ||||+|++.|+.
T Consensus       180 t~l~~A~~~~~~  191 (201)
T 3hra_A          180 TAMDYANQKGYT  191 (201)
T ss_dssp             CHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCH
Confidence            999999999986

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.83  E-value=1.8e-20  Score=152.15  Aligned_cols=99  Identities=12%  Similarity=0.053  Sum_probs=90.1

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..+.   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++
T Consensus        48 ~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  121 (153)
T 1awc_B           48 STTEVLLRA-GVSR---DARTKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             HHHHHHHTT-TCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            668899888 3333   34788999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .+    ++++.+|.+|+||||+|+..|+.
T Consensus       122 ~g----a~~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B          122 YG----ADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cC----CCccccCCCCCCHHHHHHHcCCH
Confidence            98    78999999999999999999976

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=6e-21  Score=152.16  Aligned_cols=97  Identities=14%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             HHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           62 LRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        62 l~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      ++.|+++ ..++   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        30 v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  103 (136)
T 2jab_A           30 VRILMAN-GADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG  103 (136)
T ss_dssp             HHHHHHT-TCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHc-CCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5555555 2222   22455566666666666666666666655  4555555666666666666666666666666555


Q ss_pred             cccccccccccCCCCCHHHHHHhcCCC
Q 041572          142 KAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       142 ~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                          ++++.+|.+|+||||+|++.|+.
T Consensus       104 ----~~~~~~~~~g~tpl~~A~~~~~~  126 (136)
T 2jab_A          104 ----ADVNAQDKFGKTAFDISIGNGNE  126 (136)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ----CCCcCcCCCCCCHHHHHHHCCCH
Confidence                45555666666666666655544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.82  E-value=1.6e-20  Score=162.15  Aligned_cols=181  Identities=13%  Similarity=0.028  Sum_probs=135.8

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCch-hHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPS-IKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      +...+.+|.||||.|++.+.....   .++++.+.... .......+..|.++.    ++++.|++.+ ...   +.+|.
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v---~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~---~~~~~  107 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLV---KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADP---SLIDG  107 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHH---HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCT---TCCCT
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHH---HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCC---cccCC
Confidence            456788999999999999876652   22223222211 111123344454443    7899999883 333   34788


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC-HHHHHHHHcCCcccccccccccC-CCCCHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ-ENVFNIIFNMPKAQTFFVADIDV-KGVNIL  159 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~~in~~d~-~G~TpL  159 (313)
                      .|.||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..++ .+++++|++.+    .+++.++. .|+|||
T Consensus       108 ~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~----~~~~~~~~~~g~t~L  181 (240)
T 3eu9_A          108 EGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN----VSVNLGDKYHKNTAL  181 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT----CCTTCCCTTTCCCHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC----CCcchhhccCCCcHH
Confidence            999999999999999999999998  77889999999999999997776 89999999998    68888887 999999


Q ss_pred             HHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          160 HSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |+|+..|+. .+...+++..  ......|.+|.||+++|.+...
T Consensus       182 ~~A~~~~~~-~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          182 HWAVLAGNT-TVISLLLEAG--ANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             HHHHHHTCH-HHHHHHHHHT--CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHHcCCH-HHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCc
Confidence            999999987 3333444332  3334448999999999988643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=2.8e-20  Score=151.97  Aligned_cols=101  Identities=15%  Similarity=0.108  Sum_probs=89.8

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      .++++.|+++ ..+.   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|+
T Consensus        50 ~~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  123 (162)
T 1ihb_A           50 PEIARRLLLR-GANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLV  123 (162)
T ss_dssp             HHHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3678899888 3333   34788999999999999999999999998  7889999999999999999999999999999


Q ss_pred             cCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          139 NMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       139 ~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +.+.   ..++.+|.+|.||||+|+..|+.
T Consensus       124 ~~g~---~~~~~~~~~g~t~l~~A~~~~~~  150 (162)
T 1ihb_A          124 KHTA---SNVGHRNHKGDTACDLARLYGRN  150 (162)
T ss_dssp             HHSC---CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HccC---CCCCCcCCCCCcHHHHHHHcCCH
Confidence            9883   23689999999999999999986

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.82  E-value=2.5e-20  Score=164.85  Aligned_cols=84  Identities=13%  Similarity=0.089  Sum_probs=42.5

Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC----HHHHHHHHcCCcccccccccccCCC
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ----ENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      +..|.||||+|+..|+.++++.|++. .+..++.+|..|+||||+|+..++    .+++++|++.+    +++|.+|.+|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g----~~~~~~~~~g  219 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG----ADVNVRGERG  219 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT----CCSSCCCTTS
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC----CCCCCcCCCC
Confidence            34455555555555555555555544 444445555555555555555555    44555555544    3445555555


Q ss_pred             CCHHHHHHhcCCC
Q 041572          156 VNILHSAARSVPS  168 (313)
Q Consensus       156 ~TpLH~Aa~~~~~  168 (313)
                      +||||+|++.|+.
T Consensus       220 ~t~L~~A~~~~~~  232 (285)
T 1wdy_A          220 KTPLILAVEKKHL  232 (285)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCH
Confidence            5555555555443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=3.3e-20  Score=152.53  Aligned_cols=120  Identities=9%  Similarity=-0.006  Sum_probs=105.5

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +-..|.+|.||||.|+..+..                                ++++.|+++ ..+.   +.+|..|.||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~~-g~~~---~~~~~~g~t~   72 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQI--------------------------------AVVEFLLQN-GADP---QLLGKGRESA   72 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCH--------------------------------HHHHHHHHT-TCCT---TCCCTTCCCH
T ss_pred             cCCCCCCCCCHHHHHHHCCCH--------------------------------HHHHHHHHc-CCCC---CCcCCCCCcH
Confidence            556788999999999876543                                348888888 3333   3477899999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||+|+..|
T Consensus        73 L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           73 LSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999  8889999999999999999999999999999988    788999999999999999999


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      +.
T Consensus       147 ~~  148 (167)
T 3v31_A          147 YR  148 (167)
T ss_dssp             CH
T ss_pred             cH
Confidence            87

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=9e-21  Score=166.49  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=95.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      ++++.|++.     .+.+.+|..|+||||+||..|+.++++.|++.  +.+++.+| ..|+||||+|+.+|+.+++++|+
T Consensus        59 ~~v~~Ll~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  131 (244)
T 3ui2_A           59 QALSQLLED-----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALV  131 (244)
T ss_dssp             HHHHHTTTT-----CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcC-----CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            567777763     23344788999999999999999999999998  78888888 78999999999999999999999


Q ss_pred             cCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          139 NMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       139 ~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +.+    +++|.+|.+|+||||+|+..++                    +..|.||++.+.+..
T Consensus       132 ~~g----a~~~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g  171 (244)
T 3ui2_A          132 ELG----ADIEVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIG  171 (244)
T ss_dssp             HTT----CCTTCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHH
T ss_pred             HCC----CCCCCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcC
Confidence            998    7899999999999999997654                    345788888877643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=7e-21  Score=159.58  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN-EDGDDIFHAAVKHRQENVFNIIF  138 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll  138 (313)
                      ++++.|++.     .+.+.+|..|+||||+|+..|+.++++.|++.  +.+++.+| ..|+||||+|+..|+.+++++|+
T Consensus        58 ~~v~~Ll~~-----~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  130 (183)
T 3deo_A           58 QALSQLLED-----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALV  130 (183)
T ss_dssp             HHHHHHTTT-----SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhc-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHH
Confidence            456666652     12234677788888888888888888888877  66677777 77888888888888888888888


Q ss_pred             cCCcccccccccccCCCCCHHHHHHhcCC
Q 041572          139 NMPKAQTFFVADIDVKGVNILHSAARSVP  167 (313)
Q Consensus       139 ~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  167 (313)
                      +.+    ++++.+|.+|+||||+|++.++
T Consensus       131 ~~g----a~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          131 ELG----ADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHT----CCTTCCCTTSCCHHHHHHHHHH
T ss_pred             HcC----CCCcCCCCCCCCHHHHHHHhcc
Confidence            877    6777888888888888877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.1e-20  Score=147.78  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=84.8

Q ss_pred             HHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC
Q 041572           61 ILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM  140 (313)
Q Consensus        61 il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  140 (313)
                      +++.|+++ ..++   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.
T Consensus        22 ~v~~ll~~-~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           22 EVKDYVAK-GEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             HHHHHHHT-TCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHc-CCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            37788887 3333   44788999999999999999999999988  888999999999999999999999999999999


Q ss_pred             CcccccccccccCCCCCHHHHHHhc
Q 041572          141 PKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus       141 ~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      +    ++++.+|.+|+||||+|+..
T Consensus        96 g----a~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           96 G----ADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             T----CCTTCCCTTSCCHHHHCCCH
T ss_pred             C----CCCCCcCCCCCCHHHHhCCH
Confidence            8    78999999999999999544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.82  E-value=3.5e-20  Score=156.05  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +...|.+|.||||.|+..+..                                ++++.|+++ ..++   +.+|..|.||
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~~-g~~~---~~~~~~g~t~  104 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRL--------------------------------GIAEKLLSK-GSNV---NTKDFSGKTP  104 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCH--------------------------------HHHHHHHHH-TCCT---TCCCTTSCCH
T ss_pred             cccccccCccHHHHHHHcCCH--------------------------------HHHHHHHHC-CCCC---CCCCCCCCcH
Confidence            445788899999999866443                                348888887 3333   3478899999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||+|+..|
T Consensus       105 L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELG----ADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhC
Confidence            9999999999999999998  8889999999999999999999999999999998    789999999999999999999


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      +.
T Consensus       179 ~~  180 (192)
T 2rfm_A          179 RQ  180 (192)
T ss_dssp             CH
T ss_pred             cH
Confidence            86

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=4.2e-21  Score=153.08  Aligned_cols=116  Identities=15%  Similarity=0.006  Sum_probs=99.2

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCC-C
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVK-G  155 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~-G  155 (313)
                      +.+|..|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+. |+.+++++|++.+    +++|.+|.. |
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g----~~~~~~~~~~g   78 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG----AEPNCADPATL   78 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT----CCSSCCBTTTT
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC----CCCCCcCCCCC
Confidence            34788999999999999999999999998  78899999999999999999 9999999999988    789999999 9


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +||||+|+..|+. .+...+++...  .....|.+|.||+++|.+..
T Consensus        79 ~t~L~~A~~~~~~-~~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~~~  122 (136)
T 1d9s_A           79 TRPVHDAAREGFL-DTLVVLHRAGA--RLDVCDAWGRLPVDLAEEQG  122 (136)
T ss_dssp             BCHHHHHHHHTCH-HHHHHHHHTCC--CCCCCSSSSSCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHcCC--CCCccCCCCCCHHHHHHHcC
Confidence            9999999999987 33334443322  23334889999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.82  E-value=2.7e-20  Score=160.94  Aligned_cols=164  Identities=12%  Similarity=0.092  Sum_probs=119.8

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCc-----hhHhhhhhccccHHHH----HHHHHHHhccccccchhh
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPP-----SIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAK   77 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~   77 (313)
                      +-..|.+|.||||.|+..+........   ++.+...     ...+..+.+..|.++.    ++++.|+++ ..+.+...
T Consensus        30 ~~~~~~~g~t~L~~A~~~g~~~~v~~L---l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  105 (232)
T 2rfa_A           30 VHQRGAMGETALHIAALYDNLEAAMVL---MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARA  105 (232)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHH---HHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHH---HHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCccc
Confidence            456789999999999999877652222   1211111     1122234455565554    899999998 44443211


Q ss_pred             ----------hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHH----HHHHcCCcc
Q 041572           78 ----------ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVF----NIIFNMPKA  143 (313)
Q Consensus        78 ----------~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv----~~Ll~~~~~  143 (313)
                                ..|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++    ++|++.+..
T Consensus       106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~  183 (232)
T 2rfa_A          106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH--GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG  183 (232)
T ss_dssp             CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred             CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence                      1244799999999999999999999998  888999999999999999999999988    999998832


Q ss_pred             c--ccccccccCCCCCHHHHHHhcCCCCCcchHHhh
Q 041572          144 Q--TFFVADIDVKGVNILHSAARSVPSSEVSGAALQ  177 (313)
Q Consensus       144 ~--~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~  177 (313)
                      .  ....+.+|.+|+||||+|++.|+. .+...+++
T Consensus       184 ~~~~~~~~~~~~~g~tpl~~A~~~g~~-~~v~~Ll~  218 (232)
T 2rfa_A          184 DHLKSLELVPNNQGLTPFKLAGVEGNI-VMFQHLMQ  218 (232)
T ss_dssp             CSSCCGGGCCCTTSCCHHHHHHHHTCH-HHHHHHHH
T ss_pred             hhhhhhhccCCCCCCCHHHHHHHcCCH-HHHHHHHh
Confidence            1  111268999999999999999987 33334443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.81  E-value=5.5e-20  Score=151.90  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=113.5

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ...+..+.|+++.|++.|.....   .++++.+......+....+..|.++.    ++++.|+++ ..+.   +.+|..|
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~---~~~~~~g   80 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEV---RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADV---NAVDHAG   80 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHH---HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT---TCCCTTS
T ss_pred             ccCCCcccchHHHHHHcCCHHHH---HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC---CccCCCC
Confidence            34455667888888887776652   22223333322233334444555543    789999988 3433   3478899


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||+|+
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG----ADVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999998  8889999999999999999999999999999998    788999999999999999


Q ss_pred             hcCCC
Q 041572          164 RSVPS  168 (313)
Q Consensus       164 ~~~~~  168 (313)
                      +.|+.
T Consensus       155 ~~~~~  159 (169)
T 2y1l_E          155 DNGNE  159 (169)
T ss_dssp             HTTCH
T ss_pred             HhCCH
Confidence            99986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.81  E-value=8.7e-20  Score=148.20  Aligned_cols=98  Identities=14%  Similarity=0.129  Sum_probs=88.2

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..+.   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++
T Consensus        49 ~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  122 (156)
T 1bd8_A           49 AIALELLKQ-GASP---NVQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHC-CCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence            568888888 3433   44788999999999999999999999998  78899999999999999999999999999998


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .     ++++.+|.+|.||||+|+..|+.
T Consensus       123 ~-----~~~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A          123 E-----SDLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             T-----SCTTCCCTTSCCHHHHHHHSCCH
T ss_pred             c-----cCCCCcCCCCCCHHHHHHHcCcH
Confidence            6     36889999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=1.8e-20  Score=149.41  Aligned_cols=116  Identities=18%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      ....+.||||+||..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+|.+|+||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG----ADVNAVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCH
Confidence            344678999999999999999999998  7888999999999999999999999999999998    7899999999999


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          159 LHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      ||+|+..|+. .+...+++..  ......|.+|.||+++|.+...
T Consensus        84 L~~A~~~~~~-~~v~~Ll~~g--~~~~~~~~~g~tpl~~A~~~~~  125 (136)
T 2jab_A           84 LHLAAFIGHL-EIAEVLLKHG--ADVNAQDKFGKTAFDISIGNGN  125 (136)
T ss_dssp             HHHHHHHTCH-HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCH-HHHHHHHHcC--CCCcCcCCCCCCHHHHHHHCCC
Confidence            9999999987 3333444332  2233448899999999987643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.81  E-value=4.4e-21  Score=177.35  Aligned_cols=180  Identities=9%  Similarity=0.005  Sum_probs=135.7

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      -..|.+|.||||.|+..|....   ..++++.+..+...+....+..|.++.    ++++.|++++ ...     .+.+|
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~---v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~-----~~~~g   84 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDE---VRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVH-----SLWHG   84 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHH---HHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC-CCC-----CCBTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHH---HHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCc-----cccCC
Confidence            4568899999999999988766   233334444444444455666676664    8999999983 322     34579


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhC---CCCccc-----------------ccCCCChHHHHHHHcC--CHHHHHHHHcCC
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYF---PWSLSF-----------------SNEDGDDIFHAAVKHR--QENVFNIIFNMP  141 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~---~~~~~~-----------------~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~  141 (313)
                      .||||+|+..|+.++++.|++. .   +..++.                 +|..|+||||+|+..|  +.+++++|++.+
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEG-AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHH-HHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHh-ccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            9999999999999999999985 2   344444                 8889999999999999  999999999998


Q ss_pred             cccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHH---hhhhhhcCCCCChhhhhhHhh
Q 041572          142 KAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRE---LQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       142 ~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~---l~~~~~n~~G~Tp~dla~~~~  202 (313)
                          +++|.+|.+|.||||+|+..|+. .+...+++...+   ......|..|.||+++|....
T Consensus       164 ----a~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          164 ----ASPTAKDKADETPLMRAMEFRNR-EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             ----CCCcccCCCCCCHHHHHHHcCCH-HHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence                78999999999999999999987 344444443222   113334889999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.81  E-value=7.4e-20  Score=157.09  Aligned_cols=149  Identities=7%  Similarity=-0.056  Sum_probs=118.4

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCC-CchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYY-PPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      +-..|.+|.||||.|+..+.........   +.+. .....+....+..|.++.    ++++.|+++ ....   +.+|.
T Consensus        51 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~---~~~~~  123 (223)
T 2f8y_A           51 ANIQDNMGRTPLHAAVSADAQGVFQILI---RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADV---NAVDD  123 (223)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH---HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCT---TCBCT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHH---HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCC---cCcCC
Confidence            3457889999999999998776532222   2111 111222233344455443    789999988 3433   34788


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      .|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    ++++.+|..|.||||+
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~  197 (223)
T 2f8y_A          124 LGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF----ANRDITDHMDRLPRDI  197 (223)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC----CCCccccccCCCHHHH
Confidence            999999999999999999999998  8889999999999999999999999999999998    6889999999999999


Q ss_pred             HHhcCCC
Q 041572          162 AARSVPS  168 (313)
Q Consensus       162 Aa~~~~~  168 (313)
                      |++.++.
T Consensus       198 A~~~~~~  204 (223)
T 2f8y_A          198 AQERMHH  204 (223)
T ss_dssp             HHHTTCH
T ss_pred             HHHhcch
Confidence            9999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=4.3e-20  Score=143.81  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             HHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           62 LRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        62 l~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      ++.|+++ ..++   +.+|..|.||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        18 v~~Ll~~-~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (126)
T 1n0r_A           18 VKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (126)
T ss_dssp             HHHHHHH-TCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHc-CCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence            5666665 2222   23566677777777777777777777776  5666777777777777777777777777777766


Q ss_pred             cccccccccccCCCCCHHHHHHhcCCC
Q 041572          142 KAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       142 ~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                          ++++.+|.+|+||||+|+..++.
T Consensus        92 ----~~~~~~~~~g~t~l~~A~~~~~~  114 (126)
T 1n0r_A           92 ----ADVNAKDKNGRTPLHLAARNGHL  114 (126)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ----CCCcccCCCCCCHHHHHHHcCcH
Confidence                56677777777777777777654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=8.2e-20  Score=167.05  Aligned_cols=135  Identities=14%  Similarity=0.094  Sum_probs=95.7

Q ss_pred             HHHHHHHhccccccc-------hhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC--
Q 041572           60 EILRIICVGAVDIAT-------AAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ--  130 (313)
Q Consensus        60 ~il~~l~~~~~~~~~-------~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~--  130 (313)
                      ++++.++++ ..+++       .....+..|.||||+|++.|+.++++.||++ .+.+++.+|..|+|+||.++..++  
T Consensus       139 ~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~-~gad~n~~d~~g~t~l~~~~~~~~~~  216 (337)
T 4g8k_A          139 KALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-MGADVNACDNMGRNALIHALLSSDDS  216 (337)
T ss_dssp             HHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred             HHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc-cCCCcCccCCCCCcHHHHHHHHcCcc
Confidence            677777776 33332       1223566788889988888888888888876 678888888888888888776554  


Q ss_pred             --HHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          131 --ENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       131 --~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                        .+++++|++.|    +++|.+|.+|+||||+|++.|+.+.+ ..+++ .........|.+|.||+++|.+..
T Consensus       217 ~~~~i~~lLl~~g----ad~n~~d~~g~t~L~~a~~~~~~~~v-~~Ll~-~~~~~vn~~d~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          217 DVEAITHLLLDHG----ADVNVRGERGKTPLILAVEKKHLGLV-QRLLE-QEHIEINDTDSDGKTALLLAVELK  284 (337)
T ss_dssp             THHHHHHHHHHTT----CCTTCCCGGGCCHHHHHHHTTCHHHH-HHHHT-STTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cHHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhhhhHHH-HHHHH-hcCCcccCcCCCCCCHHHHHHHcC
Confidence              35778888887    67888999999999999988876322 22221 112233344888999999988754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.80  E-value=3.5e-20  Score=166.18  Aligned_cols=99  Identities=11%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..++   +.+|.+|.||||+||..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        54 ~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  127 (299)
T 1s70_B           54 EEVLRLLER-GADI---NYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (299)
T ss_dssp             HHHHHHHHH-CCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            558888887 3333   34778899999999999999999999998  78889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .+    ++++.+|.+|.||||+|+..++.
T Consensus       128 ~g----~~~~~~~~~g~t~l~~A~~~~~~  152 (299)
T 1s70_B          128 QG----AHVGAVNSEGDTPLDIAEEEAME  152 (299)
T ss_dssp             TT----CCTTCCCTTSCCHHHHCCSHHHH
T ss_pred             CC----CCCCCcCCCCCCHHHHHHhcchH
Confidence            88    67888999999999999877665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.80  E-value=1.1e-19  Score=149.20  Aligned_cols=119  Identities=8%  Similarity=0.032  Sum_probs=102.4

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      ....+.+|.||||.|+..+..                                ++++.|+++ ..++   +.+|..|+||
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~~-g~~~---~~~~~~g~t~   78 (165)
T 3twr_A           35 CRDIEGRQSTPLHFAAGYNRV--------------------------------SVVEYLLQH-GADV---HAKDKGGLVP   78 (165)
T ss_dssp             CCCTTTTCCCHHHHHHHTTCH--------------------------------HHHHHHHHT-TCCT---TCCCTTSCCH
T ss_pred             ccccccCCCCHHHHHHHcChH--------------------------------HHHHHHHhc-CCCC---CccCCCCCCH
Confidence            345677788999998866543                                348888888 3433   4478899999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcC
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSV  166 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~  166 (313)
                      ||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    ++++.+|.+|+||||+|+. +
T Consensus        79 L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG----ADPTKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTGGGSCT-T
T ss_pred             HHHHHHcCcHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCChhHhHhc-C
Confidence            9999999999999999998  8889999999999999999999999999999998    7899999999999999876 5


Q ss_pred             CC
Q 041572          167 PS  168 (313)
Q Consensus       167 ~~  168 (313)
                      +.
T Consensus       152 ~~  153 (165)
T 3twr_A          152 DT  153 (165)
T ss_dssp             CH
T ss_pred             Ch
Confidence            54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=8.1e-20  Score=135.96  Aligned_cols=81  Identities=22%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      +|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHH
Confidence            489999999999999999999998  8889999999999999999999999999999998    7899999999999999


Q ss_pred             HHhcCCC
Q 041572          162 AARSVPS  168 (313)
Q Consensus       162 Aa~~~~~  168 (313)
                      |++.|+.
T Consensus        75 A~~~~~~   81 (93)
T 1n0q_A           75 AARNGHL   81 (93)
T ss_dssp             HHHTTCH
T ss_pred             HHHcCCH
Confidence            9999986

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=2.6e-20  Score=173.48  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      +|.+|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+. ...+++.+|.+|.||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK-LKGDIEELDRNGMTA  238 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH-HHHTTSCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHC--CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCc-cccChhhcCCCCCCH
Confidence            566677777777777777777777766  56666666777777777777777777777766541 113566666677777


Q ss_pred             HHHHHhcC
Q 041572          159 LHSAARSV  166 (313)
Q Consensus       159 LH~Aa~~~  166 (313)
                      ||+|+..+
T Consensus       239 L~~A~~~~  246 (373)
T 2fo1_E          239 LMIVAHNE  246 (373)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHhC
Confidence            77766665

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.80  E-value=3.7e-20  Score=156.28  Aligned_cols=116  Identities=10%  Similarity=0.069  Sum_probs=94.2

Q ss_pred             CCCCcHHHHHHHhCcH----HHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC------HHHHHHHHcCCccccccccc
Q 041572           81 NVLKKPMFTAAKFGIY----EIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ------ENVFNIIFNMPKAQTFFVAD  150 (313)
Q Consensus        81 ~~g~tpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~------~~iv~~Ll~~~~~~~~~in~  150 (313)
                      ..|+||||+|+.+|+.    +++++||+.  +++++.+|..|+||||+|+..|+      .+++++|++.|    +++|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G----adin~  109 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG----ADITA  109 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT----CCSSS
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC----CCCCc
Confidence            6799999999999975    599999998  89999999999999999999997      57899999999    89999


Q ss_pred             ccCCCC-CHHHHHHhcCCCC----CcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          151 IDVKGV-NILHSAARSVPSS----EVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       151 ~d~~G~-TpLH~Aa~~~~~~----~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      +|.+|+ ||||+|+..+..+    .+...+++ +........|++|+||+++|.+...
T Consensus       110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~-~~gad~~~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A          110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS-QSGLQLLIKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT-STTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred             cCCCcCchHHHHHHHcCCChhhHHHHHHHHHH-hcCCCCcccCCCCCCHHHHHHHcCC
Confidence            999999 9999999965431    01122222 1233344459999999999988653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.80  E-value=4e-20  Score=154.06  Aligned_cols=145  Identities=13%  Similarity=0.016  Sum_probs=106.7

Q ss_pred             CCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHH
Q 041572           12 ADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus        12 ~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      .++.++|+.|++.|..........  .........+....+..|.++.    ++++.|+++ ..+.   +.+|..|+|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~---~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARI---NVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHH--CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT---TCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh--cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCC---CCcCCCCCCHH
Confidence            456677777777666554222111  1111111222223334444433    779999988 3443   34788999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCC
Q 041572           88 FTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVP  167 (313)
Q Consensus        88 h~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  167 (313)
                      |+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||+|+..++
T Consensus        77 ~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSSBCCTTSCCGGGGSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCcchhccCCCCcHHHHHHHHH
Confidence            999999999999999998  8889999999999999999999999999999998    7899999999999999998776


Q ss_pred             C
Q 041572          168 S  168 (313)
Q Consensus       168 ~  168 (313)
                      .
T Consensus       151 ~  151 (179)
T 3f6q_A          151 E  151 (179)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.80  E-value=1.5e-19  Score=140.68  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=95.6

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHS  161 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~  161 (313)
                      +|+||||+|++.|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    .+++.+|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCCcHHHH
Confidence            589999999999999999999999  7788999999999999999999999999999988    6889999999999999


Q ss_pred             HHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          162 AARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       162 Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |+..++. .+...+++..  ......|.+|.||+++|.+..
T Consensus        75 A~~~~~~-~~~~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~  112 (126)
T 1n0r_A           75 AARNGHL-EVVKLLLEAG--ADVNAKDKNGRTPLHLAARNG  112 (126)
T ss_dssp             HHHTTCH-HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcChH-HHHHHHHHcC--CCCcccCCCCCCHHHHHHHcC
Confidence            9999987 3333333322  223344889999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.79  E-value=7.9e-20  Score=160.63  Aligned_cols=125  Identities=17%  Similarity=0.167  Sum_probs=103.1

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCC-------
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENV-------   82 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~-------   82 (313)
                      +|.+|.||||.|+..+..                                ++++.|+++ ..+++.   +|..       
T Consensus        86 ~d~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~~-ga~~~~---~~~~~~~~~~~  129 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSL--------------------------------QCVKLLVEN-GADVHL---RACGRFFQKHQ  129 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCH--------------------------------HHHHHHHHT-TCCTTC---CCCSGGGSCCS
T ss_pred             ccccCCCHHHHHHHcCCH--------------------------------HHHHHHHHc-CCCCCc---ccccccccccc
Confidence            457799999999876643                                337778877 343332   4443       


Q ss_pred             ------CCcHHHHHHHhCcHHHHHHHHH---hhCCCCcccccCCCChHHHHHHH--cCCHH-------HHHHHHcCCccc
Q 041572           83 ------LKKPMFTAAKFGIYEIVMEIII---SYFPWSLSFSNEDGDDIFHAAVK--HRQEN-------VFNIIFNMPKAQ  144 (313)
Q Consensus        83 ------g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~~  144 (313)
                            |+||||+|+..|+.++++.|++   .  +.+++.+|..|+||||+|+.  +++.+       ++++|++.|   
T Consensus       130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~--ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g---  204 (256)
T 2etb_A          130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQ--PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG---  204 (256)
T ss_dssp             SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccc--CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC---
Confidence                  9999999999999999999999   7  88899999999999999999  88888       999999988   


Q ss_pred             cccc-------ccccCCCCCHHHHHHhcCCCCCcchHHhh
Q 041572          145 TFFV-------ADIDVKGVNILHSAARSVPSSEVSGAALQ  177 (313)
Q Consensus       145 ~~~i-------n~~d~~G~TpLH~Aa~~~~~~~i~~~~l~  177 (313)
                       +++       +.+|.+|+||||+|++.|+. .+...+++
T Consensus       205 -a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~-~~v~~Ll~  242 (256)
T 2etb_A          205 -ARLCPTVQLEEISNHQGLTPLKLAAKEGKI-EIFRHILQ  242 (256)
T ss_dssp             -HHHSTTCCGGGCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             -CCcccccccccccCCCCCCHHHHHHHhCCH-HHHHHHHh
Confidence             567       89999999999999999987 34344444

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=159.01  Aligned_cols=125  Identities=13%  Similarity=0.200  Sum_probs=106.0

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcH
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKP   86 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tp   86 (313)
                      +-..|.+|.||||+|+.....                           .....++++.|++.+    ......|..|+||
T Consensus       138 ~~~~~~~g~tpL~~a~~~~~~---------------------------~~~~~~~v~~Ll~~g----~~~~~~~~~g~tp  186 (276)
T 4hbd_A          138 VDKQNRAGYSPIMLTALATLK---------------------------TQDDIETVLQLFRLG----NINAKASQAGQTA  186 (276)
T ss_dssp             TTCCCTTSCCHHHHGGGCCCC---------------------------SHHHHHHHHHHHHHS----CTTCCCTTTCCCH
T ss_pred             CCCCCCCCCCHHHHHHHHHhh---------------------------hhhhHHHHHHHHHcC----CCccccCCCCCCH
Confidence            456789999999998743211                           123356788888883    2233467889999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc-CCcccccccccccCCCCCHHHHHHhc
Q 041572           87 MFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN-MPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        87 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      ||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++ .+    +++|.+|.+|+||||+|+..
T Consensus       187 Lh~A~~~g~~~~v~~Ll~~--gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g----ad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          187 LMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS----CDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT----CCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC----CCCcCcCCCCCCHHHHHHHc
Confidence            9999999999999999998  88899999999999999999999999999999 66    78999999999999999999


Q ss_pred             CCC
Q 041572          166 VPS  168 (313)
Q Consensus       166 ~~~  168 (313)
                      |+.
T Consensus       261 g~~  263 (276)
T 4hbd_A          261 GQS  263 (276)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.79  E-value=9.1e-20  Score=160.46  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhc------
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETE------   80 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d------   80 (313)
                      +..+|.+|.||||+|+..|..                                ++++.|+++ ..+++.   +|      
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~~-ga~~~~---~~~~~~~~  129 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCK--------------------------------HYVELLVEK-GADVHA---QARGRFFQ  129 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCH--------------------------------HHHHHHHHT-TCCTTC---CCEECCCS
T ss_pred             ccccccCCCCHHHHHHHcCCH--------------------------------HHHHHHHhC-CCCcCc---cccccccC
Confidence            344566899999999876544                                347788887 343332   33      


Q ss_pred             --------CCCCcHHHHHHHhCcHHHHHHHHH---hhCCCCcccccCCCChHHHHHHHcCC---------HHHHHHHHcC
Q 041572           81 --------NVLKKPMFTAAKFGIYEIVMEIII---SYFPWSLSFSNEDGDDIFHAAVKHRQ---------ENVFNIIFNM  140 (313)
Q Consensus        81 --------~~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~  140 (313)
                              ..|+||||+|+..|+.++++.|++   .  +.+++.+|..|+||||+|+..++         .+++++|++.
T Consensus       130 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  207 (260)
T 3jxi_A          130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK--QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK  207 (260)
T ss_dssp             SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc--CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence                    579999999999999999999999   7  88899999999999999999888         7999999998


Q ss_pred             Cccccccc-------ccccCCCCCHHHHHHhcCCCCCcchHHhh
Q 041572          141 PKAQTFFV-------ADIDVKGVNILHSAARSVPSSEVSGAALQ  177 (313)
Q Consensus       141 ~~~~~~~i-------n~~d~~G~TpLH~Aa~~~~~~~i~~~~l~  177 (313)
                      |    +++       +.+|.+|+||||+|++.|+. .+...+++
T Consensus       208 g----a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~-~~v~~Ll~  246 (260)
T 3jxi_A          208 C----AKLFPDTNLEALLNNDGLSPLMMAAKTGKI-GIFQHIIR  246 (260)
T ss_dssp             H----HHHCTTCCGGGCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             C----cccccccchhhcccCCCCCHHHHHHHcCCH-HHHHHHHH
Confidence            8    555       78999999999999999987 34444444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.79  E-value=7.3e-20  Score=157.70  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC-CcccccccccccCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM-PKAQTFFVADIDVKGV  156 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~in~~d~~G~  156 (313)
                      .++.+|.||||+||..|+.++++.|++.  +..++.+|..|+||||+||.+|+.+++++|++. +    +++|.+|.+|+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g----~~~~~~d~~g~  141 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN----IELNQQNKLGD  141 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT----CCCCCCCTTSC
T ss_pred             ccccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC----CCccccCCCCC
Confidence            3677899999999999999999999998  788999999999999999999999999999998 6    78999999999


Q ss_pred             CHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          157 NILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       157 TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      ||||+|+..|+. .+...+++..  ......|.+|.||+++|....
T Consensus       142 tpL~~A~~~~~~-~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~  184 (222)
T 3ehr_A          142 TALHAAAWKGYA-DIVQLLLAKG--ARTDLRNIEKKLAFDMATNAA  184 (222)
T ss_dssp             CHHHHHHHHTCH-HHHHHHHHHT--CCSCCCCTTSCCHHHHCCSHH
T ss_pred             CHHHHHHHcCCH-HHHHHHHHcC--CCCccccCCCCCHHHHhcchh
Confidence            999999999987 3444444432  223344899999999998643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.78  E-value=4.6e-20  Score=155.73  Aligned_cols=100  Identities=12%  Similarity=0.025  Sum_probs=88.2

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCc------HHHHHHHHHhhCCCCcccccCCCC-hHHHHHHHcCC-
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGI------YEIVMEIIISYFPWSLSFSNEDGD-DIFHAAVKHRQ-  130 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~------~~~v~~Ll~~~~~~~~~~~d~~G~-t~Lh~A~~~g~-  130 (313)
                      .++++.|+++ ..++   +.+|.+|+||||+|+..|+      .++++.|++.  +++++.+|..|+ ||||+|+..+. 
T Consensus        55 ~~iv~~Ll~~-Gadv---n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           55 YKISMFLINK-GADI---KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             HHHHHHHHHT-TCCS---SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             HHHHHHHHHC-CCCC---CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCC
Confidence            4679999998 4444   4478999999999999997      6889999998  899999999999 99999999554 


Q ss_pred             ----HHHHHHHHc-CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          131 ----ENVFNIIFN-MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       131 ----~~iv~~Ll~-~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                          .+++++|++ .|    +++|.+|.+|.||||+|++.|+.
T Consensus       129 ~~~~~~iv~~Ll~~~g----ad~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          129 ENEMIPLYKLIFSQSG----LQLLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             HHHHHHHHHHHHTSTT----CCTTCCCTTSCCHHHHHHTTTCH
T ss_pred             hhhHHHHHHHHHHhcC----CCCcccCCCCCCHHHHHHHcCCH
Confidence                569999999 88    79999999999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.78  E-value=1.5e-19  Score=160.54  Aligned_cols=148  Identities=17%  Similarity=0.114  Sum_probs=112.4

Q ss_pred             CCCCCCCccccccccC---CCcchhhhhhhc----------cCCCCCchhHhhhhhccccHHHH----HHHHHHHhcccc
Q 041572            9 SENADGDLEKQLSETS---PFAFGLYISYFY----------LNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVD   71 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~---~~~~~~~~~~~~----------l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~   71 (313)
                      .+|.+|.||||+|+.+   +...........          ++....  .++....+..|.++.    ++++.|+++ ..
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~--~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga  125 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT--DSYYKGQTALHIAIERRNMTLVTLLVEN-GA  125 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC--STTTTTCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc--cccCCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence            4688999999999975   655442211111          111000  012234455566554    899999998 44


Q ss_pred             ccchhhhhcC--------------CCCcHHHHHHHhCcHHHHHHHHH---hhCCCCcccccCCCChHHHHHHHcCC----
Q 041572           72 IATAAKETEN--------------VLKKPMFTAAKFGIYEIVMEIII---SYFPWSLSFSNEDGDDIFHAAVKHRQ----  130 (313)
Q Consensus        72 ~~~~~~~~d~--------------~g~tpLh~Aa~~G~~~~v~~Ll~---~~~~~~~~~~d~~G~t~Lh~A~~~g~----  130 (313)
                      +++.   ++.              .|.||||+|+..|+.++++.|++   .  +.+++.+|..|+||||+|+..|+    
T Consensus       126 ~~~~---~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--gad~~~~d~~g~tpLh~A~~~~~~~~~  200 (273)
T 2pnn_A          126 DVQA---AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ--PADISARDSVGNTVLHALVEVADNTVD  200 (273)
T ss_dssp             CTTC---CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             CcCc---cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC--CCCceeeCCCCCcHHHHHHHccCcchh
Confidence            4433   444              79999999999999999999999   7  88899999999999999999998    


Q ss_pred             -----HHHHHHHHcCCcccccccc-------cccCCCCCHHHHHHhcCCC
Q 041572          131 -----ENVFNIIFNMPKAQTFFVA-------DIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       131 -----~~iv~~Ll~~~~~~~~~in-------~~d~~G~TpLH~Aa~~~~~  168 (313)
                           .+++++|++.+    +++|       .+|.+|+||||+|++.|+.
T Consensus       201 ~~~~~~~~v~~Ll~~g----a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          201 NTKFVTSMYNEILILG----AKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhh----hhcccccccccccCCCCCCHHHHHHHhChH
Confidence                 79999999988    5565       5999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.2e-19  Score=157.97  Aligned_cols=126  Identities=20%  Similarity=0.135  Sum_probs=97.5

Q ss_pred             HHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCc
Q 041572           63 RIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPK  142 (313)
Q Consensus        63 ~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  142 (313)
                      +.|+++ ....+.....+.+|.||||+||..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+ 
T Consensus         2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-   77 (229)
T 2vge_A            2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAG-   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-
Confidence            344555 233333333567788999999999999999999998  7789999999999999999999999999999998 


Q ss_pred             ccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhh-cCCCCChhhhh
Q 041572          143 AQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKL-NDKDKTPRELF  198 (313)
Q Consensus       143 ~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~-n~~G~Tp~dla  198 (313)
                         +++|.+|.+|+||||+|+..|+. .+...+++...+  .... |.+|.||+++|
T Consensus        78 ---a~~n~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           78 ---ANVNSPDSHGWTPLHCAASCNDT-VICMALVQHGAA--IFATTLSDGATAFEKC  128 (229)
T ss_dssp             ---CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHTTTCC--TTCCCSSTTCCTGGGC
T ss_pred             ---CCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC--cccccCCCCCCHHHHH
Confidence               78999999999999999999987 343444443222  2223 46999999998

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.78  E-value=1.8e-19  Score=150.96  Aligned_cols=115  Identities=18%  Similarity=0.166  Sum_probs=96.6

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc-CCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-VKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-~~G~T  157 (313)
                      .+.+|.||||+|++.|+.++++.|++   +.+++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+| .+|+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~g~t  112 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG----ADLDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCSSSSCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCC
Confidence            45678999999999999999999997   4567889999999999999999999999999998    7889898 89999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |||+|+..|+. .+...+++..  ......|.+|.||+++|.+..+
T Consensus       113 pL~~A~~~~~~-~~v~~Ll~~g--a~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          113 ALHMAAGYVRP-EVVEALVELG--ADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHHH
T ss_pred             HHHHHHhcCcH-HHHHHHHHcC--CCCcCCCCCCCCHHHHHHHhcc
Confidence            99999999987 3434444432  3334459999999999987543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.1e-19  Score=138.73  Aligned_cols=109  Identities=16%  Similarity=0.087  Sum_probs=91.4

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      .+|.+|+||||+|+..|+.++++.|++.  +..++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG----ADVNARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT----CCTTCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCCC
Confidence            3688999999999999999999999998  7788999999999999999999999999999998    789999999999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPR  195 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~  195 (313)
                      |||+|+..++. .+...+++...+  ....+..|.||.
T Consensus        78 pl~~A~~~~~~-~~~~~Ll~~ga~--~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHH-EIVKLLDAKGAD--VNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCH-HHHHHHHTTSSS--HHHHSCCCC---
T ss_pred             HHHHHHHCCCH-HHHHHHHHcCCC--CCcCCccccccc
Confidence            99999999987 344444443333  344488888874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.78  E-value=1.2e-19  Score=147.89  Aligned_cols=114  Identities=15%  Similarity=0.002  Sum_probs=96.3

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC-
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN-  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T-  157 (313)
                      .+..|.||||+|++.|+.++++.|++.  +..++.+|..|+||||+|+ .|+.+++++|++.+    +++|.+|..|+| 
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g----~~~~~~d~~g~tt   80 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG----AEPNCADPATLTR   80 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT----CCCCCCCTTTCCC
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC----CCCCCcCCCCCcH
Confidence            567899999999999999999999998  7889999999999999995 99999999999998    789999999999 


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |||+|++.|+. .+...+++.  .......|..|.||+++|....
T Consensus        81 pL~~A~~~~~~-~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~  122 (156)
T 1bi7_B           81 PVHDAAREGFL-DTLVVLHRA--GARLDVRDAWGRLPVDLAEELG  122 (156)
T ss_dssp             HHHHHHHHTCH-HHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHCCCH-HHHHHHHHc--CCCCcccCCCCCCHHHHHHHhC
Confidence            99999999987 333344433  2233344889999999998764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=1.2e-19  Score=156.43  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=90.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++. ..++   +.+|..|+||||+||..|+.++++.|++. .+..++.+|..|+||||+|+..|+.+++++|++
T Consensus        87 ~~v~~Ll~~-g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  161 (222)
T 3ehr_A           87 SWLRECLDN-RVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLA  161 (222)
T ss_dssp             HHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            678899888 3433   34788999999999999999999999997 788999999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .|    ++++.+|.+|.||||+|+..++.
T Consensus       162 ~g----a~~~~~~~~g~t~l~~A~~~~~~  186 (222)
T 3ehr_A          162 KG----ARTDLRNIEKKLAFDMATNAACA  186 (222)
T ss_dssp             HT----CCSCCCCTTSCCHHHHCCSHHHH
T ss_pred             cC----CCCccccCCCCCHHHHhcchhHH
Confidence            98    78999999999999999987765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.77  E-value=6.7e-19  Score=159.62  Aligned_cols=127  Identities=15%  Similarity=0.055  Sum_probs=97.9

Q ss_pred             HHHHHHHhccccccchh---hhhcCCCCcHHHHHHHh---CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHH
Q 041572           60 EILRIICVGAVDIATAA---KETENVLKKPMFTAAKF---GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENV  133 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~---~~~d~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  133 (313)
                      +.++.+++. ..+++..   ..+|..|+||||+|+..   |+.+++++|++.  +.+++.+|..|+||||+|+..|+.++
T Consensus       165 ~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~  241 (301)
T 2b0o_E          165 LSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTALHYAALYNQPDC  241 (301)
T ss_dssp             HHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            456667776 3333221   01578899999999997   999999999999  88899999999999999999999999


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +++|++.|    ++++.+|.+|+||||+|+..|+. .+...+++..        ...|.||+++|.+..
T Consensus       242 v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~~~~-~iv~~Ll~~g--------a~~g~tpLh~A~~~g  297 (301)
T 2b0o_E          242 LKLLLKGR----ALVGTVNEAGETALDIARKKHHK-ECEELLEQAQ--------AGTFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHHTT----CCCSCCCTTSCCHHHHHHHHTCH-HHHHHHHHHH--------HHTTSSCCC------
T ss_pred             HHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHhc--------CCCCCChhHHHHhcC
Confidence            99999998    78999999999999999999987 3333332221        236899999998653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.76  E-value=3.1e-19  Score=155.89  Aligned_cols=125  Identities=17%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      +.++.|++++ ...+    .+..|.||||.|+..|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++
T Consensus        19 ~~~~~ll~~g-~~~~----~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   91 (239)
T 1ycs_B           19 KTGSERIAHG-MRVK----FNPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ   91 (239)
T ss_dssp             -----------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhccC-CCcc----cCchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5677888873 3332    235789999999999999999999998  77899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCC-Chhhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDK-TPRELF  198 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~-Tp~dla  198 (313)
                      .+    +++|.+|.+|+||||+|+..|+. .+...+++...+  ....|..|. ||+++|
T Consensus        92 ~g----a~~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~--~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           92 FG----VNVNAADSDGWTPLHCAASCNNV-QVCKFLVESGAA--VFAMTYSDMQTAADKC  144 (239)
T ss_dssp             HT----CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCC--TTCCCSSSCCCHHHHC
T ss_pred             cC----CCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC--cceecCCCCcchHHHH
Confidence            88    78999999999999999999987 344444443322  233365665 999998

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.76  E-value=1.8e-18  Score=155.11  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=40.6

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC-CCHHHH
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG-VNILHS  161 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G-~TpLH~  161 (313)
                      |+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|..| .||||+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~g~~t~L~~  135 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN----WRLMFYGKTGWKTSFYH  135 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC----GGGGGCSSSGGGSHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----CCCCccCCCCCCCHHHH
Confidence            45555555555555555555544  4444445555555555555555555555555544    3444555555 455555


Q ss_pred             HHhcCCC
Q 041572          162 AARSVPS  168 (313)
Q Consensus       162 Aa~~~~~  168 (313)
                      |+..|+.
T Consensus       136 A~~~~~~  142 (285)
T 3kea_A          136 AVMLNDV  142 (285)
T ss_dssp             HHHTTCH
T ss_pred             HHHcCCH
Confidence            5555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=7.9e-19  Score=163.44  Aligned_cols=131  Identities=11%  Similarity=0.037  Sum_probs=92.5

Q ss_pred             HHHHHHHhccccccchhhhhc--CCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETE--NVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNII  137 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d--~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  137 (313)
                      ++++.|+++ ..+++.   ++  ..|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|
T Consensus       214 ~~v~~LL~~-Gadvn~---~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  287 (368)
T 3jue_A          214 PTMADALAH-GADVNW---VNGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHHATILGHTGLACLF  287 (368)
T ss_dssp             HHHHHHHHT-TCCTTC---CCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHc-CCCCCc---cccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            568888888 344433   44  7899999999999999999999998  888999999999999999999999999999


Q ss_pred             HcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhh-HHhhhhhhcCCCCChhhhhhHh
Q 041572          138 FNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQ-RELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       138 l~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~-~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      ++.+    ++++.+|.+|+||||+|+..++. .+...+++.. .+......+..+.|+++++.+.
T Consensus       288 L~~G----ad~~~~d~~G~TpL~~A~~~g~~-~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          288 LKRG----ADLGARDSEGRDPLTIAMETANA-DIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHTT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHHC----------------------
T ss_pred             HHCc----CCCCCcCCCCCCHHHHHHHCCCH-HHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9998    78999999999999999999987 3333333221 1111112266789999988764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.75  E-value=8.9e-19  Score=160.29  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=83.4

Q ss_pred             HHHHHHHhccccccchhhh-hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCC---HHHHH
Q 041572           60 EILRIICVGAVDIATAAKE-TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQ---ENVFN  135 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~-~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~iv~  135 (313)
                      ++++.|.+. ..+   .+. +|.+|+||||+||..|+.++|+.||+.  +.+++.+|..|+||||+|+.+|+   .++++
T Consensus       111 ~~~~~l~~~-g~d---vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          111 EVNDAFPNT-QLN---LNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHCTTS-CCC---SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             HHHHHHHhc-CCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence            455555555 222   234 688999999999999999999999999  88999999999999999999999   67888


Q ss_pred             HHHcCCcccccccccccCCCCCHHHHHHh----cCCC
Q 041572          136 IIFNMPKAQTFFVADIDVKGVNILHSAAR----SVPS  168 (313)
Q Consensus       136 ~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~----~~~~  168 (313)
                      .|++.+.   ++++.+|.+|+||||+|++    .|+.
T Consensus       185 ~ll~~~~---~~~~~~d~~g~tpLh~A~~~~~~~g~~  218 (327)
T 1sw6_A          185 ALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCS  218 (327)
T ss_dssp             HHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCH
T ss_pred             HHHHhhh---ccccCCCCCCCCHHHHHHHHccccccH
Confidence            8887652   4689999999999999998    5655

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.74  E-value=1.1e-18  Score=159.43  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=109.3

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccC-CCCCchhHhhhhhccccHH--------HHHHHHHHHhccccccchhhhh
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLN-PYYPPSIKSIRNTKLTHKQ--------TLEILRIICVGAVDIATAAKET   79 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~k~~~~~--------~~~il~~l~~~~~~~~~~~~~~   79 (313)
                      ..+.+|.||||.|++.|.....-.   +++ .+..+..++....+..+..        ..++++.|++++ .++   +.+
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~---LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~---n~~  235 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKI---LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADV---NVR  235 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHH---HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCT---TCC
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHH---HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCC---CCc
Confidence            346789999999999887765222   221 1222111111222222221        235788888883 433   447


Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHH
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNIL  159 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpL  159 (313)
                      |.+|+||||+|+..|+.++++.|++. .+.+++.+|.+|+||||+|+.+|+.++|++|++.|    +++|.     .|||
T Consensus       236 d~~g~t~L~~a~~~~~~~~v~~Ll~~-~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G----Ad~n~-----~~~L  305 (337)
T 4g8k_A          236 GERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG----ASTDC-----GDLV  305 (337)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHTS-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS----CSSTT-----CCHH
T ss_pred             CCCCCCHHHHHHHhhhhHHHHHHHHh-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCC-----CCHH
Confidence            88999999999999999999999987 68889999999999999999999999999999998    55554     4699


Q ss_pred             HHHHhcCCCCCcchHHhhh
Q 041572          160 HSAARSVPSSEVSGAALQM  178 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~  178 (313)
                      |+|++.|+. .+...+++.
T Consensus       306 ~~A~~~~~~-~iv~~Ll~~  323 (337)
T 4g8k_A          306 MTARRNYDH-SLVKVLLSH  323 (337)
T ss_dssp             HHHHHTTCH-HHHHHHHHT
T ss_pred             HHHHHcCCH-HHHHHHHHC
Confidence            999999987 344444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.74  E-value=1.3e-18  Score=152.76  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=96.0

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc-CCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-VKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-~~G~T  157 (313)
                      .+.+|.||||+||+.|+.++++.|++   +.+++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+| ..|+|
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~g~t  113 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG----ADLDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CCTTCCCSSSCCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCCCcCCCCCCCC
Confidence            34568899999999999999999997   4568889999999999999999999999999998    7889998 88999


Q ss_pred             HHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          158 ILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       158 pLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |||+|+..|+. .+...+++..  ......|.+|.||+++|.+..
T Consensus       114 ~L~~A~~~g~~-~~v~~Ll~~g--a~~~~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A          114 ALHMAAGYVRP-EVVEALVELG--ADIEVEDERGLTALELAREIL  155 (244)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHCC--CCCCCCCCCCCcHHHHHHHHH
Confidence            99999999987 3444444433  233445899999999998753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=7.4e-18  Score=129.46  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      .|.+|.||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tp   93 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG----ADVXAQDKFGKTA   93 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccccCCCcH
Confidence            677899999999999999999999998  7889999999999999999999999999999998    7899999999999


Q ss_pred             HHHHHhcCCC
Q 041572          159 LHSAARSVPS  168 (313)
Q Consensus       159 LH~Aa~~~~~  168 (313)
                      ||+|+..|+.
T Consensus        94 l~~A~~~~~~  103 (110)
T 2zgd_A           94 FDISIDNGNE  103 (110)
T ss_dssp             HHHHHHHTCH
T ss_pred             HHHHHHcCCH
Confidence            9999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=7.2e-18  Score=151.08  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             hcCCCCcHHHHHHHh---CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           79 TENVLKKPMFTAAKF---GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      .|..|+||||+||..   |+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~g  238 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK----ASIEIANESG  238 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTS
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCccCCC
Confidence            578899999999999   999999999999  8889999999999999999999999999999998    7899999999


Q ss_pred             CCHHHHHHhcCCC
Q 041572          156 VNILHSAARSVPS  168 (313)
Q Consensus       156 ~TpLH~Aa~~~~~  168 (313)
                      .||||+|+..|+.
T Consensus       239 ~tpL~~A~~~~~~  251 (278)
T 1dcq_A          239 ETPLDIAKRLKHE  251 (278)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCH
Confidence            9999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=5e-18  Score=130.91  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=92.9

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      .+|.+|.|+||.|+..+..                                ++++.|+++ ..++   +.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~--------------------------------~~~~~Ll~~-g~~~---~~~d~~g~t~L~   47 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHA--------------------------------EEVKKLLSK-GADV---NARSKDGNTPLH   47 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCH--------------------------------HHHHHHTTT-TCCS---SCCCSSSCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHHc-CCCC---CCcCCCCCCHHH
Confidence            5789999999999866543                                337788877 3433   337889999999


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      +|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.|    +++|.++..|.||
T Consensus        48 ~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g----a~~n~~~~~~~~~  111 (115)
T 2l6b_A           48 LAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG----ADVNARSWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTS----SSHHHHSCCCC--
T ss_pred             HHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCCCcCCcccccc
Confidence            99999999999999998  7889999999999999999999999999999998    7899999999998

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.69  E-value=1.2e-17  Score=151.39  Aligned_cols=114  Identities=14%  Similarity=0.047  Sum_probs=89.5

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHH
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFT   89 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~   89 (313)
                      .+.+|.||||+|+..+..                             ...++++.|+++ ..++   +.+|.+|+||||+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~-----------------------------~~~~iv~~Ll~~-gadv---n~~d~~G~TpLh~  232 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQ-----------------------------ASLPLVDFIIQN-GGHL---DAKAADGNTALHY  232 (301)
T ss_dssp             SCSCEECHHHHHHHTCCT-----------------------------TTHHHHHHHHHH-SSCT---TCCCTTCCCHHHH
T ss_pred             cCCCCccHHHHHHHhccc-----------------------------CcHHHHHHHHhc-CCCC---CCCCCCCCCHHHH
Confidence            578899999999865321                             013568899988 3444   4478899999999


Q ss_pred             HHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           90 AAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        90 Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      |+..|+.++++.|++.  +++++.+|..|+||||+|+..|+.+++++|++.+    ++      .|+||||+|+..|+.
T Consensus       233 A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g----a~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQ----AG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH----HH------TTSSCCC--------
T ss_pred             HHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CC------CCCChhHHHHhcCCc
Confidence            9999999999999998  8889999999999999999999999999999976    22      689999999999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.69  E-value=4.2e-17  Score=121.10  Aligned_cols=76  Identities=14%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..++   +.+|..|+||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        16 ~~v~~Ll~~-g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~   89 (93)
T 1n0q_A           16 EVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   89 (93)
T ss_dssp             HHHHHHHHT-TCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            348888888 3443   44788999999999999999999999998  88899999999999999999999999999999


Q ss_pred             CC
Q 041572          140 MP  141 (313)
Q Consensus       140 ~~  141 (313)
                      .|
T Consensus        90 ~g   91 (93)
T 1n0q_A           90 AG   91 (93)
T ss_dssp             TT
T ss_pred             cC
Confidence            87

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.68  E-value=4.9e-17  Score=157.10  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             HHHHHHHhccccccchh---hhhcCCCCcHHHHHHH---hCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHH
Q 041572           60 EILRIICVGAVDIATAA---KETENVLKKPMFTAAK---FGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENV  133 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~---~~~d~~g~tpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  133 (313)
                      +.++.|+++ ..+++..   ...|..|+||||+||+   .|+.++++.|++.  +++++.+|..|+||||+|+.+|+.++
T Consensus       146 ~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~TpLh~A~~~g~~~~  222 (497)
T 3lvq_E          146 LSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTALHYAALYNQPDC  222 (497)
T ss_dssp             HHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCCHHHHHTTTTCHHH
T ss_pred             HHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHH
Confidence            678888888 3444321   1137789999999966   9999999999999  88999999999999999999999999


Q ss_pred             HHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          134 FNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       134 v~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +++|++.|    +++|.+|.+|+||||+|+..|+.
T Consensus       223 v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~  253 (497)
T 3lvq_E          223 LKLLLKGR----ALVGTVNEAGETALDIARKKHHK  253 (497)
T ss_dssp             HHHHHHTC----CCCSCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999998    78999999999999999999987

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.64  E-value=1.3e-16  Score=148.35  Aligned_cols=115  Identities=12%  Similarity=0.064  Sum_probs=96.9

Q ss_pred             hcCCCCcHHHHHHHh-CcHHHHHHHHHhhCCCCccccc--CCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           79 TENVLKKPMFTAAKF-GIYEIVMEIIISYFPWSLSFSN--EDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      .+..+.|+||.|+.. |+.++++.|++.  +.+++..|  ..|+||||+|+..|+.+++++|++.+    +++|.+|.+|
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G----advn~~d~~G  268 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG----ANVNQADSAG  268 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTS
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC----CCCCCCCCCC
Confidence            444567899999999 999999999998  78888888  89999999999999999999999998    7899999999


Q ss_pred             CCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          156 VNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       156 ~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +||||+|+..|+. .+...+++...  .....|.+|.||+++|.+..
T Consensus       269 ~TpLh~A~~~g~~-~~v~~LL~~Ga--d~~~~d~~G~TpL~~A~~~g  312 (368)
T 3jue_A          269 RGPLHHATILGHT-GLACLFLKRGA--DLGARDSEGRDPLTIAMETA  312 (368)
T ss_dssp             CCHHHHHHHHTCH-HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCcH-HHHHHHHHCcC--CCCCcCCCCCCHHHHHHHCC
Confidence            9999999999987 34444444332  33444899999999998754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.64  E-value=3.8e-18  Score=159.29  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCC---cccccCCCChHHHHHHHcCCHHHHHH
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWS---LSFSNEDGDDIFHAAVKHRQENVFNI  136 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~---~~~~d~~G~t~Lh~A~~~g~~~iv~~  136 (313)
                      ++++.|++++ ......+..+..|.||||+||+.|+.++|++|++.  +.+   .+..+.+ +||||+|+.+|+.+++++
T Consensus       106 e~v~~Ll~~g-a~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~  181 (376)
T 2aja_A          106 SALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHAFRLAAENGHLHVLNR  181 (376)
T ss_dssp             HHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcC-CcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCHHHHHHHCCCHHHHHH
Confidence            5666766662 21101111333456677777777777777777776  322   1222222 777777777777777777


Q ss_pred             HHcCCccccccccc--ccCCCCCHHHHHH-hcCCC
Q 041572          137 IFNMPKAQTFFVAD--IDVKGVNILHSAA-RSVPS  168 (313)
Q Consensus       137 Ll~~~~~~~~~in~--~d~~G~TpLH~Aa-~~~~~  168 (313)
                      |++.+    ++++.  +|.+|.||||+|+ ..|+.
T Consensus       182 Ll~~g----a~~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          182 LCELA----PTEATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             HHHSC----GGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHcC----CccchhccCCCCCCHHHHHHHHCCCH
Confidence            77776    45555  6677777777777 77765

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.61  E-value=2.5e-16  Score=152.15  Aligned_cols=110  Identities=16%  Similarity=0.118  Sum_probs=93.4

Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccc------cCCCChHHHHHHH---cCCHHHHHHHHcCCcccccccccccCC
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFS------NEDGDDIFHAAVK---HRQENVFNIIFNMPKAQTFFVADIDVK  154 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~------d~~G~t~Lh~A~~---~g~~~iv~~Ll~~~~~~~~~in~~d~~  154 (313)
                      .+.||.|+..|+.+.++.|++.  +.+++..      |..|+||||+||.   .|+.+++++|++.|    +++|.+|.+
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g----a~vn~~d~~  206 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG----GHLDAKAAD  206 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS----CCTTCCCSS
T ss_pred             HHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC----CCCCccCCC
Confidence            4689999999999999999998  7777776      8899999999977   99999999999998    789999999


Q ss_pred             CCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          155 GVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       155 G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |+||||+|+..|+. .+...+++...+  ....|++|.||+++|....
T Consensus       207 g~TpLh~A~~~g~~-~~v~~Ll~~ga~--~~~~d~~g~tpl~~A~~~~  251 (497)
T 3lvq_E          207 GNTALHYAALYNQP-DCLKLLLKGRAL--VGTVNEAGETALDIARKKH  251 (497)
T ss_dssp             SCCHHHHHTTTTCH-HHHHHHHHTCCC--CSCCCTTCCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCH-HHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcC
Confidence            99999999999987 344444443333  3344899999999998754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.61  E-value=8.5e-16  Score=137.54  Aligned_cols=113  Identities=14%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhhCCCC-----cccccCCCChHHHHHHHc---CCHHHHHHHHcCCcccccccccccCC
Q 041572           83 LKKPMFTAAKFGIYEIVMEIIISYFPWS-----LSFSNEDGDDIFHAAVKH---RQENVFNIIFNMPKAQTFFVADIDVK  154 (313)
Q Consensus        83 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~-----~~~~d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~in~~d~~  154 (313)
                      ..++||.|+..|+.+.++.+++. ..+.     ++..|..|+||||+|+..   |+.+++++|++.|    +++|.+|.+
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g----a~in~~d~~  204 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS----GNLDKQTGK  204 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC----SCTTCCCTT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC----CCccccCCC
Confidence            35799999999999999999998 3332     444588999999999999   8999999999998    789999999


Q ss_pred             CCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          155 GVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       155 G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      |+||||+|+..|+. .+...+++...  +....|++|.||+++|.+...
T Consensus       205 g~TpLh~A~~~g~~-~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          205 GSTALHYCCLTDNA-ECLKLLLRGKA--SIEIANESGETPLDIAKRLKH  250 (278)
T ss_dssp             CCCHHHHHHHTTCH-HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCH-HHHHHHHHcCC--CCCCccCCCCCHHHHHHHcCC
Confidence            99999999999987 34444444333  334459999999999987543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.52  E-value=9.5e-15  Score=111.92  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=74.6

Q ss_pred             CCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHH
Q 041572           10 ENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFT   89 (313)
Q Consensus        10 ~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~   89 (313)
                      .+.+|.|+||.|+..+..                                ++++.|+++ ..++   +.+|..|+||||+
T Consensus        20 ~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~~-g~~i---~~~d~~g~tpLh~   63 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQD--------------------------------DEVRILMAN-GADV---AAKDKNGSTPLHL   63 (110)
T ss_dssp             --CCHHHHHHHHHHHTCH--------------------------------HHHHHHHHT-TCCT---TCCCTTCCCHHHH
T ss_pred             cCCccchHHHHHHHcCCH--------------------------------HHHHHHHHc-CCCC---CccCCCCCCHHHH
Confidence            367778888888765443                                347888887 3433   3478899999999


Q ss_pred             HHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q 041572           90 AAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNII  137 (313)
Q Consensus        90 Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  137 (313)
                      |+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|
T Consensus        64 A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           64 AARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc--CCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999998  788999999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.51  E-value=7.1e-16  Score=143.91  Aligned_cols=154  Identities=9%  Similarity=-0.023  Sum_probs=110.4

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCch---hHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcC
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPS---IKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETEN   81 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~   81 (313)
                      ..+.++.||||.|++.|....   ..+.++.+....   ..+..+.+..|.++.    ++++.|+++ ..+....+..+.
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~---v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~  162 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSA---LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAE  162 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHH---HHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHH
T ss_pred             HcCCCcCCHHHHHHHcCCHHH---HHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCC
Confidence            345677899999999988776   233334332111   112233446666664    899999999 332221222333


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCccc--ccCCCChHHHHHH-HcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSF--SNEDGDDIFHAAV-KHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~--~d~~G~t~Lh~A~-~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      + +||||+||..|+.++++.|++.  +.+++.  .|..|+||||+|+ .+|+.+++++|++.+    +       .|+||
T Consensus       163 ~-~TpLh~Aa~~G~~eiv~~Ll~~--ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g----a-------~~~ta  228 (376)
T 2aja_A          163 N-YHAFRLAAENGHLHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP----V-------MLAYA  228 (376)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH----H-------HHHHH
T ss_pred             C-CCHHHHHHHCCCHHHHHHHHHc--CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC----C-------ccchH
Confidence            3 8999999999999999999998  666666  8889999999999 999999999999965    2       28999


Q ss_pred             HHHHHhcCCCCCcchHHhhhhHH
Q 041572          159 LHSAARSVPSSEVSGAALQMQRE  181 (313)
Q Consensus       159 LH~Aa~~~~~~~i~~~~l~~~~~  181 (313)
                      ||+|++.|+.+ +...+++...+
T Consensus       229 L~~Aa~~g~~e-vv~lL~~~ga~  250 (376)
T 2aja_A          229 EIHEFEYGEKY-VNPFIARHVNR  250 (376)
T ss_dssp             HHCTTTTTTTT-HHHHHHHHHHH
T ss_pred             HHHHHHCCCHH-HHHHHHhcCcc
Confidence            99999999984 55555544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.8
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.78
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.77
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.76
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.76
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.75
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.75
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.75
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.74
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.74
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.73
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.72
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.69
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.69
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.67
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.67
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.64
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.61
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.61
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.61
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.57

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=185.74  Aligned_cols=185  Identities=12%  Similarity=0.026  Sum_probs=137.9

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCC-ch---hHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYP-PS---IKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ...|.+|.||||+|+..|.....-........... ..   ..........+   .++++.|+++ ...+   +.+|.+|
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~Ll~~-~~d~---~~~d~~g  103 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR---DEIVKALLGK-GAQV---NAVNQNG  103 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC---HHHHHHHHHT-TCCT---TCCCTTC
T ss_pred             cCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc---cchhHHHhcc-Ccee---EeeCCCC
Confidence            56799999999999998877652222111111111 00   01111111112   3788999988 3433   4488999


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      +||||+|+..|+.++++.|++.  +.+++.+|..|.||||+|+..++.+++++|++.+    .++|.+|.+|+||||+|+
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~--g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~----~~i~~~d~~g~TpL~~Aa  177 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK----ASTNIQDTEGNTPLHLAC  177 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCccchhhhhcCCcchhhhhcccc----ceeeeccCCCCceecccc
Confidence            9999999999999999999988  7888999999999999999999999999999988    689999999999999999


Q ss_pred             hcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhhhhhh
Q 041572          164 RSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKE  208 (313)
Q Consensus       164 ~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~l~~~  208 (313)
                      +.|+. .+...+++..  .+....|++|+||+++|...+.+++++
T Consensus       178 ~~g~~-~~v~~LL~~G--ad~~~~d~~g~tpl~~A~~~~~~i~~~  219 (223)
T d1uoha_         178 DEERV-EEAKLLVSQG--ASIYIENKEEKTPLQVAKGGLGLILKR  219 (223)
T ss_dssp             HTTCH-HHHHHHHHTT--CCSCCCCTTSCCHHHHCCTTHHHHHHH
T ss_pred             ccCcH-HHHHHHHHCC--CCCCCCCCCCCCHHHHHHCCCHHHHhc
Confidence            99987 3444555443  333445999999999997666665543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.4e-22  Score=172.45  Aligned_cols=96  Identities=14%  Similarity=0.096  Sum_probs=54.5

Q ss_pred             CCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHH
Q 041572            9 SENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMF   88 (313)
Q Consensus         9 ~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh   88 (313)
                      .=+++|.||||.|++++....                                ++.|+++ ..+....+.+|..|+||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~--------------------------------v~~Ll~~-~a~~~~i~~~~~~g~TpL~   50 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPF--------------------------------LDFLLGF-SAGHEYLDLQNDLGQTALH   50 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHH--------------------------------HHHHHHH-HTTSGGGGCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHH--------------------------------HHHHHHc-CCCcccccCcCCCCCCccc
Confidence            347999999999998887654                                4444444 2222222334455555555


Q ss_pred             HHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           89 TAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        89 ~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      +||..|+.++++.|++.  +.+++.+|.+|+||||+|+..++.++++.|++
T Consensus        51 ~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          51 LAAILGEASTVEKLYAA--GAGVLVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             HHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             hHHhhcccccccccccc--cccccccccccchhhhhhhccCchHHHHHHHh
Confidence            55555555555555554  44455555555555555555555555555543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=5.9e-22  Score=153.12  Aligned_cols=108  Identities=16%  Similarity=0.037  Sum_probs=92.3

Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .|||++|+++|+.++++.|++.  +.+++.+|..|+||||+|+.+|+.+++++|++.+    +++|.+|.+|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g----~din~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS----CTTTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh--hhcccccccccccccccccccccccccccccccc----ceeeecccccccchhhhh
Confidence            3799999999999999999998  7889999999999999999999999999999988    789999999999999999


Q ss_pred             hcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhH
Q 041572          164 RSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTE  200 (313)
Q Consensus       164 ~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~  200 (313)
                      +.|+. .+...+++...  +....|++|.||+++|..
T Consensus        77 ~~~~~-~~v~~Ll~~Ga--d~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          77 YEGHV-SCVKLLLSKGA--DKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTTCC-HHHHHHHTTCC--CSSSSSSSTCCCCCTCSS
T ss_pred             hcCch-hhhhhhhcccc--cceeeCCCCCCHHHHHhH
Confidence            99987 34444444332  334459999999999843

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.4e-21  Score=166.02  Aligned_cols=86  Identities=15%  Similarity=-0.016  Sum_probs=74.6

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      .+|.+|.||||+||+.|+.++++.|++. .....+..+..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+|
T Consensus       153 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g----adin~~d~~g~t  227 (255)
T d1oy3d_         153 AENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG----ADPTARMYGGRT  227 (255)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             cccccCcccccccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHCC----CCCCCCCCCCCC
Confidence            3678899999999999999999999998 44444455778999999999999999999999987    788999999999


Q ss_pred             HHHHHHhcCCC
Q 041572          158 ILHSAARSVPS  168 (313)
Q Consensus       158 pLH~Aa~~~~~  168 (313)
                      |||+|++.++.
T Consensus       228 ~L~~A~~~~~~  238 (255)
T d1oy3d_         228 PLGSALLRPNP  238 (255)
T ss_dssp             HHHHHHTSSCH
T ss_pred             HHHHHHHCCCH
Confidence            99999999886

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2e-21  Score=150.06  Aligned_cols=95  Identities=13%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++++ .++   +.+|.+|+||||+|+..|+.++++.|++.  +.+++.+|.+|+||||+|+.+|+.+++++|++
T Consensus        16 ~~v~~Ll~~g-~d~---n~~~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~   89 (118)
T d1myoa_          16 DEVKDYVAKG-EDV---NRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKLLLS   89 (118)
T ss_dssp             HHHHHHHTTT-CCC---CCCSSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHT
T ss_pred             HHHHHHHHhh-hcc---ccccccccccccccccccccccccccccc--cceeeecccccccchhhhhhcCchhhhhhhhc
Confidence            5588999883 443   34788999999999999999999999998  78899999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAAR  164 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~  164 (313)
                      .|    +++|.+|.+|+||||+|..
T Consensus        90 ~G----ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          90 KG----ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TC----CCSSSSSSSTCCCCCTCSS
T ss_pred             cc----ccceeeCCCCCCHHHHHhH
Confidence            98    7899999999999999843

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.4e-20  Score=158.77  Aligned_cols=183  Identities=13%  Similarity=0.070  Sum_probs=132.3

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhh---hhccccHHH----HHHHHHHHhccccccchhhhh
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIR---NTKLTHKQT----LEILRIICVGAVDIATAAKET   79 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~k~~~~~~----~~il~~l~~~~~~~~~~~~~~   79 (313)
                      +-.+|.+|.||||+|+..|....   ..+.++.+..+......   .....+...    .++++.+... ....+. ...
T Consensus        27 ~~~~d~~G~TpL~~A~~~g~~~i---v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~  101 (229)
T d1ixva_          27 LLQKDQDGRIPLHWSVSFQAHEI---TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDL-NKI  101 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHH---HHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS-SSCCCT-TCC
T ss_pred             ccccCCCCCCHHHHHHHcCCccc---cchhhhhhccccccccccccccccccccccccccccccccccc-cccccc-ccc
Confidence            46789999999999999987655   33334443333222111   122222222    2566666555 222222 336


Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHH
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNIL  159 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpL  159 (313)
                      +..+.||++.++..++.++++.|++.  +...+.+|..|+||||+|+.+|+.+++++|++.+.   .++|.+|.+|+|||
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~---~~in~~d~~g~TpL  176 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPL  176 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC---CCSCCCCTTSCCHH
T ss_pred             ccccccccccccccchhhhhhhhhhh--cccccccCCCCCCccchhhhccccccccccccccc---ccccccccccCCch
Confidence            77899999999999999999999998  77788899999999999999999999999999873   57899999999999


Q ss_pred             HHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          160 HSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       160 H~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |+|+..|+. .+...+++ +...+....|++|+||+++|.+.
T Consensus       177 h~A~~~~~~-~~v~~Ll~-~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         177 FHALAEGHG-DAAVLLVE-KYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHHHHTTCH-HHHHHHHH-HHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             hhhcccccH-HHHHHHHH-hcCCCCCCcCCCCCCHHHHHhhH
Confidence            999999987 33333332 11223344599999999999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=154.67  Aligned_cols=177  Identities=15%  Similarity=0.049  Sum_probs=82.7

Q ss_pred             CCCccccccccCCCcchhhhhh-hccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHH
Q 041572           13 DGDLEKQLSETSPFAFGLYISY-FYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus        13 ~g~t~l~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      ||+||||+|+..|.......+. ++...+.....++..+.+..|.++.    ++++.|++++ .+.   ..+|..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g-~d~---~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDP---ELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCS---CCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccc-ccc---ccccccccccc
Confidence            4566666665555432211111 1111222222333344444454443    4555555542 222   23555566666


Q ss_pred             HHHHHhCcHHHHHHHHHhhCC-----CCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccc-cCCCCCHHHH
Q 041572           88 FTAAKFGIYEIVMEIIISYFP-----WSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADI-DVKGVNILHS  161 (313)
Q Consensus        88 h~Aa~~G~~~~v~~Ll~~~~~-----~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~-d~~G~TpLH~  161 (313)
                      |+|+..|+.++++.|++. ..     .........|+||||.|+..++.+++++|+..+    ..++.+ |.+|+||||+
T Consensus        77 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~----~~~~~~~~~~G~T~L~~  151 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG----ADVNAQEPCNGRTALHL  151 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHH
T ss_pred             ccccccccccccchhhhh-cccccccccccccccccchhhhHHhhcCChhheeeecccC----cccccccccCCCCcccc
Confidence            666666666666666553 11     112223345566666666666666666666554    233333 3456666666


Q ss_pred             HHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHh
Q 041572          162 AARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       162 Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~  201 (313)
                      |++.|+. .+...+++..  .+....|.+|+||+++|.+.
T Consensus       152 A~~~g~~-~~v~~Ll~~g--ad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         152 AVDLQNP-DLVSLLLKCG--ADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             HHHTTCH-HHHHHHHTTT--CCSCCCCTTCCCGGGGCTTS
T ss_pred             ccccccH-HHHHHHHhcC--CcccccCCCCCCHHHHHHHC
Confidence            6666655 2223333222  22333366666666666543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.9e-20  Score=152.96  Aligned_cols=81  Identities=15%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCCh
Q 041572          115 NEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTP  194 (313)
Q Consensus       115 d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp  194 (313)
                      +..|+++||.|+..+..++++.+++.+    ...+.+|.+|+||||+|+..|+. .+...+++...  +....|.+|.||
T Consensus       141 ~~~~~~~l~~a~~~~~~~~~~~~~~~~----~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~Ga--d~n~~d~~G~Tp  213 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNSLSMVQLLLQHG----ANVNAQMYSGSSALHSASGRGLL-PLVRTLVRSGA--DSSLKNCHNDTP  213 (228)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHTCH-HHHHHHHHTTC--CTTCCCTTSCCT
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhhhhc----cccccccccCcchHHHHHHcCCH-HHHHHHHHCCC--CCCCCCCCCCCH
Confidence            345677777777778888888887776    57788999999999999999987 34344444332  334458999999


Q ss_pred             hhhhhHhh
Q 041572          195 RELFTEEH  202 (313)
Q Consensus       195 ~dla~~~~  202 (313)
                      +++|.++.
T Consensus       214 L~~A~~~~  221 (228)
T d1k1aa_         214 LMVARSRR  221 (228)
T ss_dssp             TTTCSSHH
T ss_pred             HHHHHhCC
Confidence            99997654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=6.9e-20  Score=161.46  Aligned_cols=186  Identities=15%  Similarity=0.076  Sum_probs=130.6

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      -.+|.+|.||||.|+..|....   +.++++.+..............+..+    .++++.+++++ ..   .+..|.++
T Consensus        67 n~~d~~G~T~L~~A~~~g~~ei---v~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~-~~---~~~~~~~~  139 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDM---VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AH---VGAVNSEG  139 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CC---TTCCCTTS
T ss_pred             CccCCCCCcHHHHHHhcCCcee---eeeecccccccccccccccccccccccccccchhhcccccC-cc---cccccccC
Confidence            3578889999999999887665   22233333222221112222222222    36777887773 22   23467889


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCC--------------------------CcccccCCCChHHHHHHHcCCHHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPW--------------------------SLSFSNEDGDDIFHAAVKHRQENVFNII  137 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~--------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  137 (313)
                      .+|+++|+..|+.+.++.++.. .+.                          .....+..|.||||.|+..|+.++++.|
T Consensus       140 ~~~~~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  218 (291)
T d1s70b_         140 DTPLDIAEEEAMEELLQNEVNR-QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (291)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccchhccccccc-cccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccc
Confidence            9999999999999998888864 222                          2345678899999999999999999999


Q ss_pred             HcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhhhhhhh
Q 041572          138 FNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHKGLVKE  208 (313)
Q Consensus       138 l~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~~l~~~  208 (313)
                      ++.+    +++|.+|.+|+||||+|++.|+. .+...+++...+  ....|++|+||+++|.+.-.+++++
T Consensus       219 l~~g----~din~~~~~g~TpL~~A~~~g~~-~iv~lLl~~Gad--v~~~d~~G~TaL~~A~e~~~~~L~~  282 (291)
T d1s70b_         219 IQAR----YDVNIKDYDGWTPLHAAAHWGKE-EACRILVENLCD--MEAVNKVGQTAFDVADEDILGYLEE  282 (291)
T ss_dssp             HTTT----CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCC--TTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred             ccce----ecccccccCCCCHHHHHHHcCCH-HHHHHHHHCCCC--CCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            9988    68999999999999999999998 444555544333  3445999999999998754444433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=2e-19  Score=156.78  Aligned_cols=99  Identities=9%  Similarity=-0.002  Sum_probs=68.8

Q ss_pred             CCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHHHHH
Q 041572           11 NADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPMFTA   90 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~A   90 (313)
                      +++|.||||+|+..|.........                        ....+.++++| .++   +.+|.+|+||||+|
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll------------------------~~~~~~~l~~G-adv---n~~d~~G~TpLh~A   81 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLI------------------------VHEAKECIAAG-ADV---NAMDCDENTPLMLA   81 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHH------------------------HHHHHHHHHTC-CCT---TCCCTTSCCHHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHH------------------------hcchhHHHHcC-CCc---cccCCCCCeeeccc
Confidence            356899999999887665411100                        01123444442 233   34778888888888


Q ss_pred             HHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           91 AKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        91 a~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++.|+.++++.|+++  +++++.+|.+|+||||+|+..++.++++.+..
T Consensus        82 ~~~g~~~iv~~Ll~~--Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~  128 (277)
T d2fo1e1          82 VLARRRRLVAYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLN  128 (277)
T ss_dssp             HHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTT
T ss_pred             ccccccccccccccc--ccccccccccccccccchhhhcchhhhhhhhh
Confidence            888888888888887  77788888888888888888888777766654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-19  Score=154.22  Aligned_cols=152  Identities=13%  Similarity=0.085  Sum_probs=120.3

Q ss_pred             CCCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccc---hhhhh
Q 041572            7 LHSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIAT---AAKET   79 (313)
Q Consensus         7 ~~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~---~~~~~   79 (313)
                      +-.+|.+|.||||+|++.+....   +.+.++.+..+..++..+....+....    ++++.+++.+ ....   .....
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~i---v~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  107 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEI---AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC-TTPHLHSILKAT  107 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHH---HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHST-TTTSSSCGGGCC
T ss_pred             cccCCCCCCcccccccccccccc---ccccccccccccccccccccccccccccccccccchhhhhc-cccccccccccc
Confidence            34679999999999999887654   555667666666555666555565553    7788888762 2221   23335


Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccc-cCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFS-NEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      ..+|.||||.|+..|+.+.++.|++.  +..++.. +.+|+||||+|++.|+.+++++|++.|    +++|.+|.+|.||
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~--~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g----ad~~~~~~~G~tp  181 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSP  181 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT----CCSCCCCTTCCCG
T ss_pred             ccccchhhhHHhhcCChhheeeeccc--CcccccccccCCCCccccccccccHHHHHHHHhcC----CcccccCCCCCCH
Confidence            66789999999999999999999998  4445544 578999999999999999999999998    7899999999999


Q ss_pred             HHHHHhcCCC
Q 041572          159 LHSAARSVPS  168 (313)
Q Consensus       159 LH~Aa~~~~~  168 (313)
                      ||+|+..++.
T Consensus       182 l~~A~~~~~~  191 (221)
T d1iknd_         182 YQLTWGRPST  191 (221)
T ss_dssp             GGGCTTSSCH
T ss_pred             HHHHHHCCCH
Confidence            9999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=6.9e-20  Score=163.60  Aligned_cols=131  Identities=14%  Similarity=0.078  Sum_probs=77.5

Q ss_pred             HHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcH---HHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCH----H-
Q 041572           61 ILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIY---EIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQE----N-  132 (313)
Q Consensus        61 il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~----~-  132 (313)
                      +++.|+++ ..++   +.+|..|+||||.||..|+.   +.+..+++. ....++.+|..|+||||+++..+..    . 
T Consensus       122 ~v~~Ll~~-gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~-l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~  196 (301)
T d1sw6a_         122 LVKHLVKH-GSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGCSAA  196 (301)
T ss_dssp             HHHHHHHT-TCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHC-CCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHH-HhhhhhhcccccCCHHHHHHHHhCccccHHH
Confidence            37777777 3333   33677788888888876652   222233332 2334566677788888877765442    1 


Q ss_pred             -------HHHHHHcCCccc---------------------------------ccccccccCCCCCHHHHHHhcCCCCCcc
Q 041572          133 -------VFNIIFNMPKAQ---------------------------------TFFVADIDVKGVNILHSAARSVPSSEVS  172 (313)
Q Consensus       133 -------iv~~Ll~~~~~~---------------------------------~~~in~~d~~G~TpLH~Aa~~~~~~~i~  172 (313)
                             ++..+++.+...                                 ...+|.+|.+|+||||+|++.|+. .+.
T Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~-~iv  275 (301)
T d1sw6a_         197 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI-SIV  275 (301)
T ss_dssp             HHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH-HHH
T ss_pred             HHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCH-HHH
Confidence                   222333322100                                 112688888899999999888887 444


Q ss_pred             hHHhhhhHHhhhhhhcCCCCChhhhhh
Q 041572          173 GAALQMQRELQWFKLNDKDKTPRELFT  199 (313)
Q Consensus       173 ~~~l~~~~~l~~~~~n~~G~Tp~dla~  199 (313)
                      ..+++...++  ...|++|+||+|.|.
T Consensus       276 ~~Ll~~GAd~--~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         276 DALLDYGADP--FIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHTTCCT--TCCCTTSCCGGGGTC
T ss_pred             HHHHHCCCCC--CCCCCCCCCHHHHcC
Confidence            5555443333  334888899988874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-19  Score=151.89  Aligned_cols=147  Identities=11%  Similarity=0.041  Sum_probs=111.8

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ...++.+.++++.+...+....   ..++++.+..+...+..+.+..|.++.    ++++.|++++ .+.   +.+|..|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~i---~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~---~~~~~~~  136 (223)
T d1uoha_          64 NDKDDAGWSPLHIAASAGRDEI---VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANP---DAKDHYE  136 (223)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHH---HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCT---TCCCTTS
T ss_pred             ccccccccccccccccccccch---hHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCC-CCC---CCcCCCC
Confidence            4455667788888877766544   222223332222223333444455443    7899999884 333   4578899


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .||||+|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+
T Consensus       137 ~t~L~~a~~~~~~~~~~~L~~~--~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G----ad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         137 ATAMHRAAAKGNLKMIHILLYY--KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG----ASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHCC
T ss_pred             CccchhhhhcCCcchhhhhccc--cceeeeccCCCCceeccccccCcHHHHHHHHHCC----CCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999987  7789999999999999999999999999999998    789999999999999984


Q ss_pred             hcCCC
Q 041572          164 RSVPS  168 (313)
Q Consensus       164 ~~~~~  168 (313)
                       .|+.
T Consensus       211 -~~~~  214 (223)
T d1uoha_         211 -GGLG  214 (223)
T ss_dssp             -TTHH
T ss_pred             -CCCH
Confidence             4544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-19  Score=140.86  Aligned_cols=83  Identities=8%  Similarity=0.020  Sum_probs=45.4

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCC-hHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGD-DIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~-t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      +|.+|.||||.|+ .|+.++++.|++.  +.+++.+|..|. ||||+|+++|+.+++++|++.|    ++++.+|.+|+|
T Consensus        32 ~~~~g~t~l~~a~-~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g----a~~~~~d~~G~T  104 (125)
T d1bi7b_          32 PNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG----ARLDVRDAWGRL  104 (125)
T ss_dssp             CCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT----CCSSCCCTTCCC
T ss_pred             ccccccccccccc-ccccccccccccc--ccccccccccccccccccccccccccccccccccc----cccccccCCCCC
Confidence            4555555555442 4555555555555  444555554443 3555555555555555555555    455555555555


Q ss_pred             HHHHHHhcCCC
Q 041572          158 ILHSAARSVPS  168 (313)
Q Consensus       158 pLH~Aa~~~~~  168 (313)
                      |||+|++.|+.
T Consensus       105 ~l~~A~~~g~~  115 (125)
T d1bi7b_         105 PVDLAEELGHR  115 (125)
T ss_dssp             HHHHHHHHTCH
T ss_pred             HHHHHHHcCCH
Confidence            55555555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-19  Score=140.02  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             HHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhc
Q 041572           86 PMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARS  165 (313)
Q Consensus        86 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~  165 (313)
                      +||.||..|+.++|+.|+++  +.+++.+|.+|+||||+|+..|+.+++++|++.+    +++|.+|.+|+||||+|+..
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g----~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT----CCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCccccccccccccccccccccccccccccccc----cccccccccCcccccccchh
Confidence            45555555555555555555  4445555555555555555555555555555554    44555555555555555555


Q ss_pred             CCC
Q 041572          166 VPS  168 (313)
Q Consensus       166 ~~~  168 (313)
                      |+.
T Consensus        78 g~~   80 (130)
T d1ycsb1          78 NNV   80 (130)
T ss_dssp             TCH
T ss_pred             hHH
Confidence            554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=5.7e-19  Score=147.96  Aligned_cols=85  Identities=11%  Similarity=-0.008  Sum_probs=74.0

Q ss_pred             hhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCC
Q 041572           78 ETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVN  157 (313)
Q Consensus        78 ~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~T  157 (313)
                      .++..|+||||.|+..|..++++.+++.  +..++.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+|
T Consensus       118 ~~~~~~~t~l~~~~~~~~~~~~~~l~~~--~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g----ad~n~~d~~g~T  191 (209)
T d1ot8a_         118 AADNSGKTALHWAAAVNNTEAVNILLMH--HANRDAQDDKDETPLFLAAREGSYEASKALLDNF----ANREITDHMDRL  191 (209)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             ccCCCCCCcchhhcccCcceeeeeeccc--cccccccccccccccchhccccHHHHHHHHHHCC----CCCCCcCCCCCC
Confidence            3677888999999999999999888888  6677888888999999999999999999999888    678888999999


Q ss_pred             HHHHHHhcCCC
Q 041572          158 ILHSAARSVPS  168 (313)
Q Consensus       158 pLH~Aa~~~~~  168 (313)
                      |||+|++.|+.
T Consensus       192 pl~~A~~~~~~  202 (209)
T d1ot8a_         192 PRDVASERLHH  202 (209)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            99999998876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=6.5e-19  Score=147.57  Aligned_cols=134  Identities=17%  Similarity=0.147  Sum_probs=106.3

Q ss_pred             HHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCC------------------------------
Q 041572           59 LEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFP------------------------------  108 (313)
Q Consensus        59 ~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~------------------------------  108 (313)
                      .|+++.|+++| .+++.  ..|.+|.||||+||+.|+.++++.|++. ..                              
T Consensus         2 ~~~v~~Ll~~g-~din~--~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQG-AELNA--TMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHH-HHHHH--HHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCC-CCcCc--CcCCCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccccccccccccccccc
Confidence            47899999994 44432  2578999999999999999999999985 21                              


Q ss_pred             ------------------------------------CCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc
Q 041572          109 ------------------------------------WSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID  152 (313)
Q Consensus       109 ------------------------------------~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d  152 (313)
                                                          .+++.+|..|+||||.++.+++.++++.+++.+    ..+|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~----~~~~~~d  153 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH----ANRDAQD  153 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT----CCTTCCC
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc----ccccccc
Confidence                                                113557788899999999999999999999987    6789999


Q ss_pred             CCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          153 VKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       153 ~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      .+|+||||+|+..|+. .+...+++...+  .+..|++|.||+++|.++.+
T Consensus       154 ~~g~TpL~~A~~~g~~-~~v~~Ll~~gad--~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         154 DKDETPLFLAAREGSY-EASKALLDNFAN--REITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TTCCCHHHHHHHTTCH-HHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccchhccccHH-HHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999987 444555554433  33448999999999988654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-18  Score=135.14  Aligned_cols=99  Identities=14%  Similarity=0.073  Sum_probs=86.2

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..++   +.+|.+|+||||+|+..|+.++++.|++.  +.+++.+|.+|+||||+|+.+|+.+++++|++
T Consensus        15 ~~v~~Ll~~-g~d~---n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   88 (130)
T d1ycsb1          15 DLVQRIIYE-VDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE   88 (130)
T ss_dssp             HHHHHHTST-TSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCc---ccccccccccccccccccccccccccccc--ccccccccccCcccccccchhhHHHHHHHHHH
Confidence            679999998 3443   45889999999999999999999999998  78899999999999999999999999999999


Q ss_pred             CCcccccccccccC-CCCCHHHHH--HhcCCC
Q 041572          140 MPKAQTFFVADIDV-KGVNILHSA--ARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~-~G~TpLH~A--a~~~~~  168 (313)
                      .|    +++|.+|. +|+||++++  ++.|+.
T Consensus        89 ~g----a~v~~~~~~~~~~~~~~~~a~~~g~~  116 (130)
T d1ycsb1          89 SG----AAVFAMTYSDMQTAADKCEEMEEGYT  116 (130)
T ss_dssp             TT----CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             cC----CCcccccCCCCCCHHHHHHHHHcChH
Confidence            98    67887764 589988776  455666

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-19  Score=138.97  Aligned_cols=112  Identities=15%  Similarity=0.002  Sum_probs=93.1

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCC-CHHH
Q 041572           82 VLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGV-NILH  160 (313)
Q Consensus        82 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~-TpLH  160 (313)
                      .+.++||+||++|+.++++.|+++  +.+++.+|..|+||||+|+ .|+.+++++|++.+    +++|.+|..|. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG----AEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT----CCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc--CCccccccccccccccccc-cccccccccccccc----cccccccccccccccc
Confidence            356899999999999999999998  7889999999999999775 79999999999998    68899999876 6999


Q ss_pred             HHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          161 SAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       161 ~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      +|++.|+. .+...+++.  ..+....|.+|+||+++|.+.+.
T Consensus        75 ~A~~~g~~-~~v~~Ll~~--ga~~~~~d~~G~T~l~~A~~~g~  114 (125)
T d1bi7b_          75 DAAREGFL-DTLVVLHRA--GARLDVRDAWGRLPVDLAEELGH  114 (125)
T ss_dssp             HHHHHTCH-HHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             cccccccc-ccccccccc--ccccccccCCCCCHHHHHHHcCC
Confidence            99999987 333344433  23334459999999999987653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.1e-18  Score=140.81  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=78.5

Q ss_pred             hcCCCCcHHHHHHHh---CcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCC
Q 041572           79 TENVLKKPMFTAAKF---GIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKG  155 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G  155 (313)
                      .+..|+||||+|++.   |+.++++.|++.  +.+++.+|.+|+||||+||..|+.+++++|++.|    ++++.+|.+|
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g  114 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK----ASIEIANESG  114 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTS
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccccccccccccccccccccccC----ccccccCCCC
Confidence            467799999999974   788999999999  7889999999999999999999999999999998    7899999999


Q ss_pred             CCHHHHHHhcCCC
Q 041572          156 VNILHSAARSVPS  168 (313)
Q Consensus       156 ~TpLH~Aa~~~~~  168 (313)
                      .||||+|++.|+.
T Consensus       115 ~tpL~~A~~~~~~  127 (154)
T d1dcqa1         115 ETPLDIAKRLKHE  127 (154)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCH
Confidence            9999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.9e-19  Score=140.20  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++++ ...+    .|..|+||||+|+..++.++++.++..  +......+..+.+++|.++...+.+++++++.
T Consensus        16 ~~v~~LL~~g-a~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (153)
T d1awcb_          16 DEVRILMANG-APFT----TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             HHHHHHHHHT-CCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcC-CCcc----cccCCCccccccccccccccccccccc--cccccccccccccccccccccccceeeecccc
Confidence            4588888883 3332    578899999999999999999999887  55556677888999999999999999999998


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEHK  203 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~~  203 (313)
                      .+    .+.+.+|.+|+||||+|+..|+. .+....++...+  ....|++|.||+++|.++..
T Consensus        89 ~~----~~~~~~~~~g~T~L~~A~~~g~~-~iv~~ll~~gad--~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          89 HG----ADVNAKDMLKMTALHWATEHNHQ-EVVELLIKYGAD--VHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTC
T ss_pred             cC----CccccccccCchHHHhhhhcchh-heeeeccccccC--CcccCCCCCCHHHHHHHcCC
Confidence            88    67888999999999999999987 344444444333  33449999999999987654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5e-18  Score=136.53  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             HHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC
Q 041572           61 ILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM  140 (313)
Q Consensus        61 il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  140 (313)
                      +++.|++++..   +.+.+|..|+||||+|+ .|+.++++.|++.  +.+++..+..|.+|++.++..++.++++.+++.
T Consensus        17 ~vk~lL~~~~~---~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~   90 (156)
T d1bd8a_          17 EVRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             HHHHHHHTTCC---CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHhCCC---CCCccCCCCCccccccc-ccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence            36666654212   22346777888888775 4777778888776  556777777788888888888888888888777


Q ss_pred             CcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          141 PKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       141 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      +    .++|.+|.+|+||||+|++.|+.+ +...++   ........|.+|+||+++|.+.+
T Consensus        91 ~----~~~n~~~~~~~t~L~~A~~~~~~~-i~~~L~---~~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          91 G----ADVNVPDGTGALPIHLAVQEGHTA-VVSFLA---AESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             T----CCSCCCCTTSCCHHHHHHHHTCHH-HHHHHH---TTSCTTCCCTTSCCHHHHHHHSC
T ss_pred             c----cccccccCCCCeeecccccccccc-cccccc---ccccccccCCCCCCHHHHHHHcC
Confidence            6    567777778888888888877763 333222   23334445777888888877654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-18  Score=157.41  Aligned_cols=130  Identities=13%  Similarity=0.085  Sum_probs=106.9

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.+.+. ....   +..|..|.||||.|++.|+.++++.|++.  +.+++..+..+.||||.|+..++.++++.+++
T Consensus       245 ~~~~~~~~~-~~~~---~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~--g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~  318 (408)
T d1n11a_         245 EMVALLLSK-QANG---NLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  318 (408)
T ss_dssp             HHHHHHHTT-TCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             hHhhhhhcc-cccc---ccccCCCCChhhhhhhcCcHHHHHHHHHC--CCccccccccccccchhhcccCcceeeeeecc
Confidence            455665555 2222   33678899999999999999999999998  78889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .+    +++|.+|.+|+||||+|++.|+. .+...+++...  +++.+|++|+||+++|.+.+
T Consensus       319 ~g----~~in~~d~~G~T~Lh~A~~~g~~-~iv~~Ll~~GA--d~n~~d~~G~t~L~~A~~~~  374 (408)
T d1n11a_         319 HQ----ADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLG  374 (408)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTC--CSCCCCSSSCCHHHHHHHTT
T ss_pred             cc----ccccccCCCCCCHHHHHHHcCCH-HHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcC
Confidence            88    78999999999999999999987 44445554433  34455999999999998864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-18  Score=138.27  Aligned_cols=138  Identities=12%  Similarity=0.052  Sum_probs=107.0

Q ss_pred             cccccccCCCcchhhhhhhcc-CCCCCchhHhhhhhccccHH---HHHHHHHHHhccccccchhhhhcCCCCcHHHHHHH
Q 041572           17 EKQLSETSPFAFGLYISYFYL-NPYYPPSIKSIRNTKLTHKQ---TLEILRIICVGAVDIATAAKETENVLKKPMFTAAK   92 (313)
Q Consensus        17 ~l~l~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~k~~~~~---~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~   92 (313)
                      +|+.|+..|.....   ..++ .....+..++-.+.+..|.+   ..++++.|+++ ..+.   +.++..|.+|++.|+.
T Consensus         5 ~L~~Aa~~g~~~~v---k~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~-~~~~---~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAAARGDVQEV---RRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ-GASP---NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHTCHHHH---HHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHT-TCCT---TCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHH---HHHHHhCCCCCCccCCCCCcccccccccccccccccccc-cccc---cccccccccccccccc
Confidence            38888888766552   1122 22333333444445555543   24888889888 3443   4467789999999999


Q ss_pred             hCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           93 FGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        93 ~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .++.++++.+++.  +.+++.+|..|+||||+|+..|+.+++++|++ +    ++++.+|.+|+||||+|++.|+.
T Consensus        78 ~~~~~~~~~~l~~--~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~----~~~~~~d~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_          78 TGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E----SDLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             TTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T----SCTTCCCTTSCCHHHHHHHSCCH
T ss_pred             ccccccccccccc--ccccccccCCCCeeeccccccccccccccccc-c----ccccccCCCCCCHHHHHHHcCCH
Confidence            9999999999998  67789999999999999999999999999884 4    57899999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-18  Score=156.47  Aligned_cols=148  Identities=12%  Similarity=0.137  Sum_probs=109.1

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHH----HHHHHHHHhccccccchhhhhcCCC
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQT----LEILRIICVGAVDIATAAKETENVL   83 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~----~~il~~l~~~~~~~~~~~~~~d~~g   83 (313)
                      ..++.+|.||++.|+..+.......   ...........+..+....+..+    .++++.|++++ .+.   +..+..+
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~---~~~~~~~  297 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAEMVAL---LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMV---DATTRMG  297 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHH---HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCT---TCCCSSC
T ss_pred             cccCCCCCCHHHHHHHhCcHhHhhh---hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCC-Ccc---ccccccc
Confidence            4556667777777776665543211   11211111111111111122222    37888888873 333   3467789


Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHH
Q 041572           84 KKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAA  163 (313)
Q Consensus        84 ~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa  163 (313)
                      .||||.|+..|+.++++.+++.  +.+++.+|.+|+||||+|+++|+.++|++|++.|    +++|.+|.+|+||||+|+
T Consensus       298 ~t~L~~~~~~~~~~~~~~ll~~--g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G----Ad~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         298 YTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCSSSCCHHHHHH
T ss_pred             cccchhhcccCcceeeeeeccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999998  8889999999999999999999999999999999    789999999999999999


Q ss_pred             hcCCC
Q 041572          164 RSVPS  168 (313)
Q Consensus       164 ~~~~~  168 (313)
                      +.|+.
T Consensus       372 ~~~~~  376 (408)
T d1n11a_         372 RLGYI  376 (408)
T ss_dssp             HTTCH
T ss_pred             HcCCH
Confidence            99987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=139.63  Aligned_cols=130  Identities=15%  Similarity=0.083  Sum_probs=105.5

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|++++ .++   +.+|.+|+||||+|+ .|+.++++.|++.  +.+++.++..|.++|+.++..++.+.++.|++
T Consensus        15 ~~v~~Ll~~g-~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~   87 (156)
T d1ihba_          15 EQLTSLLQNN-VNV---NAQNGFGRTALQVMK-LGNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE   87 (156)
T ss_dssp             HHHHHHTTSC-CCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHCC-CCc---CccCCcccccccccc-ccccccccccccc--ccccccccccCccccccccccccccccccccc
Confidence            6699999983 443   458899999999886 7999999999998  77889999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      .+    ..++..|..|.+|||+|++.++.+ +....++.. .......|++|+||+++|.+.+
T Consensus        88 ~~----~~~~~~~~~~~~~l~~a~~~~~~~-~~~~Ll~~~-~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          88 FQ----ADVNIEDNEGNLPLHLAAKEGHLR-VVEFLVKHT-ASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             TT----CCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cc----cccccccccccccccccccccccc-ccccccccc-cccccccCCCCCCHHHHHHHcC
Confidence            87    578899999999999999999872 222222221 1123444889999999998764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.72  E-value=2e-18  Score=150.34  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      .+..|+||||+++..|+.++++.++.. .+...+.+|..|+||||+||..|+.+++++|++.|    +++|.+|.+|+||
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g----adin~~d~~G~T~  257 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVGE-KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTA  257 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHH-SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSSCCCSSSCCH
T ss_pred             cccCCCCcccccccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc----CCCCCcCCCCCCH
Confidence            566899999999999999999998887 78888999999999999999999999999999998    7899999999999


Q ss_pred             HHHHHhcCCC
Q 041572          159 LHSAARSVPS  168 (313)
Q Consensus       159 LH~Aa~~~~~  168 (313)
                      ||+|++.|+.
T Consensus       258 L~~A~~~~~~  267 (277)
T d2fo1e1         258 RQLAQANNHH  267 (277)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHcCCH
Confidence            9999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5e-17  Score=129.46  Aligned_cols=140  Identities=11%  Similarity=0.008  Sum_probs=102.3

Q ss_pred             CccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHH----HHHHHHHhccccccchhhhhcCCCCcHHHHH
Q 041572           15 DLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTL----EILRIICVGAVDIATAAKETENVLKKPMFTA   90 (313)
Q Consensus        15 ~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~----~il~~l~~~~~~~~~~~~~~d~~g~tpLh~A   90 (313)
                      .|||+.|++.|.....-.   .++.+.. ...+..+.+..|..+.    ++++.+... ...   ....+..+.+++|.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~---LL~~ga~-~~~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRI---LMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRA-GVS---RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHH---HHHHTCC-CCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCC---TTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHH---HHHcCCC-cccccCCCccccccccccccccccccccc-ccc---ccccccccccccccc
Confidence            366777776666554222   2222211 1122333444444332    456666555 121   223566788999999


Q ss_pred             HHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCHHHHHHhcCCC
Q 041572           91 AKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus        91 a~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      +...+.+.++.++..  +...+.+|.+|+||||+|+..|+.+++++|++.|    +++|.+|.+|.||||+|+..|+.
T Consensus        75 ~~~~~~~~~~~l~~~--~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g----ad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          75 ASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccceeeeccccc--CCccccccccCchHHHhhhhcchhheeeeccccc----cCCcccCCCCCCHHHHHHHcCCH
Confidence            999999999999988  6778889999999999999999999999999998    78999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.4e-17  Score=139.85  Aligned_cols=154  Identities=10%  Similarity=0.007  Sum_probs=110.5

Q ss_pred             CCCCCC-CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHH----HHHHHHHHHhccccccchh
Q 041572            2 GPHPHL-HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQ----TLEILRIICVGAVDIATAA   76 (313)
Q Consensus         2 ~~~~~~-~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~----~~~il~~l~~~~~~~~~~~   76 (313)
                      |+.+.. -..|..|.+++|++...+.............. ..............+..    ..++++.+++.+ ...   
T Consensus        57 ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~---  131 (229)
T d1ixva_          57 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASV---  131 (229)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCS---
T ss_pred             hcccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhhc-ccc---
Confidence            566554 35688999999999987766542221111110 00000001111111111    136778887773 332   


Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcC-CcccccccccccCCC
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNM-PKAQTFFVADIDVKG  155 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~in~~d~~G  155 (313)
                      ..+|.+|+||||+|+..|+.++++.|++. .+..++.+|.+|+||||+|+.+|+.+++++|++. |    ++++.+|.+|
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g----ad~~~~d~~g  206 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG----AEYDLVDNKG  206 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----CCSCCCCTTS
T ss_pred             cccCCCCCCccchhhhccccccccccccc-ccccccccccccCCchhhhcccccHHHHHHHHHhcC----CCCCCcCCCC
Confidence            33788999999999999999999999998 7788899999999999999999999999999964 6    7899999999


Q ss_pred             CCHHHHHHhc
Q 041572          156 VNILHSAARS  165 (313)
Q Consensus       156 ~TpLH~Aa~~  165 (313)
                      +||||+|+..
T Consensus       207 ~t~l~~A~~~  216 (229)
T d1ixva_         207 AKAEDVALNE  216 (229)
T ss_dssp             CCTGGGCSCH
T ss_pred             CCHHHHHhhH
Confidence            9999999853

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.5e-17  Score=131.27  Aligned_cols=99  Identities=11%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CCCCCCCCccccccccCCCcchhhhhhhccCCCCCchhHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCCcHH
Q 041572            8 HSENADGDLEKQLSETSPFAFGLYISYFYLNPYYPPSIKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLKKPM   87 (313)
Q Consensus         8 ~~~n~~g~t~l~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~tpL   87 (313)
                      ...+..|+||||+|++.+...                             ..++++.|++++ .++   +.+|.+|+|||
T Consensus        39 ~~~~~~g~t~Lh~A~~~~~~~-----------------------------~~~iv~~Ll~~g-adi---n~~d~~g~TpL   85 (154)
T d1dcqa1          39 ANGHEPDETALHLAVRSVDRT-----------------------------SLHIVDFLVQNS-GNL---DKQTGKGSTAL   85 (154)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTT-----------------------------THHHHHHHHHHC-SCT---TCCCTTCCCHH
T ss_pred             ccCCCCCCchHHHHHHhcCCC-----------------------------CHHHHHHHHHcC-CCh---hhhhhhhcccc
Confidence            345778899999988543211                             135688888883 433   45889999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCC
Q 041572           88 FTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMP  141 (313)
Q Consensus        88 h~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  141 (313)
                      |+||+.|+.++++.|++.  +.+++.+|.+|+||||+|+++|+.+++++|++.+
T Consensus        86 h~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccccc--CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999998  8889999999999999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=127.89  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=88.4

Q ss_pred             HHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHc
Q 041572           60 EILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFN  139 (313)
Q Consensus        60 ~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  139 (313)
                      ++++.|+++ ..+   .+.++..|.++++.++..|+.+.++.|++.  ...++..|..|.+|||+|+..++.+++++|++
T Consensus        47 ei~~~Ll~~-~a~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  120 (156)
T d1ihba_          47 EIARRLLLR-GAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK  120 (156)
T ss_dssp             HHHHHHHHT-TCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccc-ccc---cccccccCcccccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            457888887 333   345788999999999999999999999988  66788999999999999999999999999999


Q ss_pred             CCcccccccccccCCCCCHHHHHHhcCCC
Q 041572          140 MPKAQTFFVADIDVKGVNILHSAARSVPS  168 (313)
Q Consensus       140 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  168 (313)
                      .+.   .+.+.+|.+|.||||+|++.++.
T Consensus       121 ~~~---~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_         121 HTA---SNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HSC---CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccc---ccccccCCCCCCHHHHHHHcCCH
Confidence            873   47899999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.7e-17  Score=134.03  Aligned_cols=84  Identities=10%  Similarity=-0.003  Sum_probs=78.1

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      .+..|.+|||.|+..+..++++.+++.  +...+.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||
T Consensus       140 ~~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G----ad~n~~d~~G~Tp  213 (228)
T d1k1aa_         140 DIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDTP  213 (228)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCT
T ss_pred             cccchhhHHHHHHHhhhhhhhhhhhhh--ccccccccccCcchHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCH
Confidence            445789999999999999999999998  7788999999999999999999999999999998    7899999999999


Q ss_pred             HHHHHhcCCC
Q 041572          159 LHSAARSVPS  168 (313)
Q Consensus       159 LH~Aa~~~~~  168 (313)
                      ||+|++.|+.
T Consensus       214 L~~A~~~~~~  223 (228)
T d1k1aa_         214 LMVARSRRVI  223 (228)
T ss_dssp             TTTCSSHHHH
T ss_pred             HHHHHhCCCc
Confidence            9999988764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.64  E-value=1.6e-18  Score=157.77  Aligned_cols=114  Identities=12%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhccccccchhhhhcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCccccc--CCCChHHHHHHHcCCHHHH
Q 041572           57 QTLEILRIICVGAVDIATAAKETENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSN--EDGDDIFHAAVKHRQENVF  134 (313)
Q Consensus        57 ~~~~il~~l~~~~~~~~~~~~~~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~iv  134 (313)
                      ..+++++.|++. ...+   +.+|.+|+||||+||++||.++|+.|++.  +.+++..|  .+|+||||+||.+||.++|
T Consensus       104 ~~~~~~~~L~~~-~~~i---n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~--g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv  177 (346)
T d2ajaa1         104 SALDTLCLLLTS-DEIV---KVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAENYHAFRLAAENGHLHVL  177 (346)
T ss_dssp             HHHHHHTTC--C-CSSC---C--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhC-CCcc---cccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCccccccccCCCChhHHHHHHhhHHHH
Confidence            334445556666 2333   33667788888888888888888888887  55566554  4588888888888888888


Q ss_pred             HHHHcCCcccccccccccCCCCCHHHHHHhcCCCCCcchHHhhh
Q 041572          135 NIIFNMPKAQTFFVADIDVKGVNILHSAARSVPSSEVSGAALQM  178 (313)
Q Consensus       135 ~~Ll~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~i~~~~l~~  178 (313)
                      ++|++.+.. ....+.++.+|.||||.|++.|+. .+...+++.
T Consensus       178 ~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~-~iv~~Ll~~  219 (346)
T d2ajaa1         178 NRLCELAPT-EATAMIQAENYYAFRWAAVGRGHH-NVINFLLDC  219 (346)
T ss_dssp             HHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCH-HHHHHHTTS
T ss_pred             HHHHHcCCc-ccccccccCCCcchhhHHhhcCHH-HHHHHHHhC
Confidence            888887632 123455566677777788888876 344444443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.9e-16  Score=133.79  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=93.7

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcC----CHHHHHHHHcCCcccccccccccCC
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHR----QENVFNIIFNMPKAQTFFVADIDVK  154 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g----~~~iv~~Ll~~~~~~~~~in~~d~~  154 (313)
                      .+..|.||||+|+++|+.++++.|++. .+.+++.+|..|+++++.+...+    ..++++.|++.+    +++|.+|..
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g----a~~n~~~~~  218 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG----ADVNVRGER  218 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT----CCSSCCCTT
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhc-cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCC----CCCCccCCC
Confidence            666799999999999999999999988 78889999999999888776544    346889999988    678999999


Q ss_pred             CCCHHHHHHhcCCCCCcchHHhhhhHHhhhhhhcCCCCChhhhhhHhh
Q 041572          155 GVNILHSAARSVPSSEVSGAALQMQRELQWFKLNDKDKTPRELFTEEH  202 (313)
Q Consensus       155 G~TpLH~Aa~~~~~~~i~~~~l~~~~~l~~~~~n~~G~Tp~dla~~~~  202 (313)
                      |.||||+|++.|+.+ +....++. ........|.+|.||+++|.+..
T Consensus       219 g~t~L~~a~~~~~~~-~v~~lL~~-~g~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         219 GKTPLILAVEKKHLG-LVQRLLEQ-EHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             SCCHHHHHHHTTCHH-HHHHHHHS-SSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCccchhhhcCcHH-HHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcC
Confidence            999999999999873 32233321 12334445889999999998865

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.6e-16  Score=134.66  Aligned_cols=134  Identities=10%  Similarity=-0.028  Sum_probs=92.2

Q ss_pred             CCCCCccccccccCCCcchhhhhh--hccCCCCCch----hHhhhhhccccHHHHHHHHHHHhccccccchhhhhcCCCC
Q 041572           11 NADGDLEKQLSETSPFAFGLYISY--FYLNPYYPPS----IKSIRNTKLTHKQTLEILRIICVGAVDIATAAKETENVLK   84 (313)
Q Consensus        11 n~~g~t~l~l~~~~~~~~~~~~~~--~~l~~~~~~~----~~~~~~~k~~~~~~~~il~~l~~~~~~~~~~~~~~d~~g~   84 (313)
                      +..|.||||.|++.+.....-...  .-.+++....    ...............++++.|+++ ..++   +.+|..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~-ga~~---n~~~~~g~  220 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADV---NVRGERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCS---SCCCTTSC
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC-CCCC---CccCCCCC
Confidence            567899999999988655422111  0011111110    000001111122234678888887 3443   34778899


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccC
Q 041572           85 KPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDV  153 (313)
Q Consensus        85 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~  153 (313)
                      ||||+|++.|+.++++.||+. ++.+++.+|.+|+||||+|+++|+.+++++|++.|    +++|.+|.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~-~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G----Ad~n~~d~  284 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG----ASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHS-SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----SCSCCSSC
T ss_pred             CccchhhhcCcHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCcccC
Confidence            999999999999999999987 78888999999999999999999999999999998    78888773

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=3e-16  Score=137.72  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             hcCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCcccccccccccCCCCCH
Q 041572           79 TENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADIDVKGVNI  158 (313)
Q Consensus        79 ~d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d~~G~Tp  158 (313)
                      .+..|.||||.|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.++|++|+++|    +++|.+|.+|+||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~--g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G----adv~~~d~~G~Ta  268 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTA  268 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccc--eecccccccCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCH
Confidence            667899999999999999999999988  7889999999999999999999999999999998    7899999999999


Q ss_pred             HHHHHh
Q 041572          159 LHSAAR  164 (313)
Q Consensus       159 LH~Aa~  164 (313)
                      ||+|++
T Consensus       269 L~~A~e  274 (291)
T d1s70b_         269 FDVADE  274 (291)
T ss_dssp             TTSCCS
T ss_pred             HHHHHH
Confidence            999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.59  E-value=2.3e-17  Score=150.13  Aligned_cols=118  Identities=11%  Similarity=-0.012  Sum_probs=89.5

Q ss_pred             hhhcCCCCcHHHHHHHhCcHHHHHH---HHHhhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHcCCccccccccccc-
Q 041572           77 KETENVLKKPMFTAAKFGIYEIVME---IIISYFPWSLSFSNEDGDDIFHAAVKHRQENVFNIIFNMPKAQTFFVADID-  152 (313)
Q Consensus        77 ~~~d~~g~tpLh~Aa~~G~~~~v~~---Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~in~~d-  152 (313)
                      ..++.+|+||||+||++|+.++++.   |++.  +..++.+|..|+||||+||.+||.++|++|++.|    ++++.+| 
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g----~~~~~~~~  157 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA----PTEIMAMI  157 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC----TTTHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCcccccc
Confidence            4478899999999999999988776   5565  8889999999999999999999999999999998    5667665 


Q ss_pred             -CCCCCHHHHHHhcCCCCCcchHHhhhhHHh-hhhhhcCCCCChhhhhhHh
Q 041572          153 -VKGVNILHSAARSVPSSEVSGAALQMQREL-QWFKLNDKDKTPRELFTEE  201 (313)
Q Consensus       153 -~~G~TpLH~Aa~~~~~~~i~~~~l~~~~~l-~~~~~n~~G~Tp~dla~~~  201 (313)
                       .+|+||||+|++.|+. .+...+++..... .....+.+|.||+..|.+.
T Consensus       158 ~~~g~t~L~~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~  207 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHL-HVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  207 (346)
T ss_dssp             SHHHHHHHHHHHHTTCH-HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             ccCCCChhHHHHHHhhH-HHHHHHHHcCCcccccccccCCCcchhhHHhhc
Confidence             5699999999999998 4545555433221 1122245567888888664

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.7e-15  Score=134.60  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             cCCCCcHHHHHHHhCcHHHHHHHHHhhCCCCcccccCCCChHHHHHHHcCCH-------HHHHHHHcCCccccccccccc
Q 041572           80 ENVLKKPMFTAAKFGIYEIVMEIIISYFPWSLSFSNEDGDDIFHAAVKHRQE-------NVFNIIFNMPKAQTFFVADID  152 (313)
Q Consensus        80 d~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~~~~in~~d  152 (313)
                      |.+|+||||+||..|+.++|+.||+.  +++++.+|..|+||||.||..++.       ++++++.       ..++.+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~-------~~~~~~d  174 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-------PCLILED  174 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG-------GGGGEEC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh-------hhhhhcc
Confidence            88999999999999999999999998  889999999999999999987752       3344332       3467789


Q ss_pred             CCCCCHHHHHHhcCCC
Q 041572          153 VKGVNILHSAARSVPS  168 (313)
Q Consensus       153 ~~G~TpLH~Aa~~~~~  168 (313)
                      ..|+||||.++..+..
T Consensus       175 ~~g~t~lh~~~~~~~~  190 (301)
T d1sw6a_         175 SMNRTILHHIIITSGM  190 (301)
T ss_dssp             TTCCCHHHHHHHHHTS
T ss_pred             cccCCHHHHHHHHhCc
Confidence            9999999998876654