Citrus Sinensis ID: 041573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDDEETS
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHccccEEEEcc
Coil and Loop (DISEMBL)
MGNREEELHAAARSGDLKAVQSILIsnplsvnsrdkhsrtplhlaawSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGvsikactrkglnplhyavQGSHLELVKYLLRKGAsltaktkagktpldlaRNEEIRSFLEEWEqsskkpnlngkekagesetklgdsgvevsasspdgkrdenlkrkgdeddikeeassepKKAKLVLKHLVseddtqddeets
Flexible Loop (DISEMBL)
MGNREEELHAAARSGDLKAVQSILISNplsvnsrdkhSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASltaktkagktpldlarNEEIRSFLeeweqsskkpnlngkekagesetklgdsgvevsasspdgkrdenlkrkgdeddikeeassepkkaklvlkhlvseddtqddeets
Low Complexity Region (SEG)
MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGDEDDIkeeassepkkakLVLKHLVSeddtqddeetS
Disordered region (IsUnstruct)
*****************************************LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT***********************************************************************************************************
Disordered Region (DISOPRED)
MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDT*D***T*
Disordered Region (DISEMBL)
*************SGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE*************************************************************KKAKLVLKHLV************
Disordered Region (DISPRO)
**NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDDEETS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.584	0.117	0.407	3e-21
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	no	0.554	0.030	0.422	1e-19
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.659	0.080	0.384	2e-19
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.579	0.074	0.374	6e-19
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.575	0.034	0.368	2e-18
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.571	0.072	0.408	2e-18
Q5F478	990	Serine/threonine-protein	no	no	0.890	0.214	0.294	5e-18
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	no	no	0.592	0.106	0.372	6e-18
O95271	1327	Tankyrase-1 OS=Homo sapie	no	no	0.592	0.106	0.372	6e-18
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.584	0.035	0.342	7e-18

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/140 (40%), Positives = 82/140 (58%), Gaps = 1/140 (0%)

Query: 5    EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
            E  LH AA+SG+L  V + LI N   ++++     T LH AA SG   +V++L KNKAD+
Sbjct: 899  ETILHFAAKSGNLNLV-NWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADI 957

Query: 65   GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
             A      + +HFA++ G+L +V  L+ +G  I   T  GL  LHYAV+  +L LV  L+
Sbjct: 958  HAKTNSGETILHFAAESGNLNLVSLLIHNGTDINTKTDDGLTALHYAVESGNLNLVSLLI 1017

Query: 125  RKGASLTAKTKAGKTPLDLA 144
             KG  + AKT +G+T L  A
Sbjct: 1018 HKGIDVNAKTNSGETILHFA 1037

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 3/135 (2%)

Query: 11  AARSGDL-KAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM 69
           AAR+G L KA+    I N + +N  +++    LHLA+  G  EVVS L + +A+V AA  
Sbjct: 48  AARAGHLEKALD--YIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATK 105

Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
              +A+H AS  G  EVV+ LV++G ++ A ++ G  PL+ A Q +HLE+VK+LL  GAS
Sbjct: 106 KGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGAS 165

Query: 130 LTAKTKAGKTPLDLA 144
            +  T+ G TPL +A
Sbjct: 166 QSLATEDGFTPLAVA 180

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H AA  G +  V S L+ +  S N+ +    T LH+AA SGQ EVV YL ++ A V A 
Sbjct: 420 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAK 478

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH A +  H ++  +LL  G
Sbjct: 479 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHG 538

Query: 128 ASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQSSKKPNLNGK 168
           ASL+  TK G TPL +A      E+ S L    Q S  P+  GK
Sbjct: 539 ASLSITTKKGFTPLHVAAKYGKLEVASLL---LQKSASPDAAGK 579

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 1/139 (0%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N    LH AA+   ++  +S+L     S N+      TPLHLAA  G TE+V+ L   +A
Sbjct: 597 NGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQA 655

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           +        ++ +H  SQ+GH+ V   L+  GV++ A TR G  PLH A    +++LVK+
Sbjct: 656 NGNLGNKSGLTPLHLVSQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKF 715

Query: 123 LLRKGASLTAKTKAGKTPL 141
           LL+  A + AKTK G +PL
Sbjct: 716 LLQHQADVNAKTKLGYSPL 734

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 7/144 (4%)

Query: 8   LHAAARSGDLKAVQSIL-------ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
           LH AAR  D K+   +L       + + + VN   +   TPLH+AA  G   V + L   
Sbjct: 196 LHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 255

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
            A V   A + ++ +H AS++G+  +V+ L+  G  I A TR GL PLH A +  H ++V
Sbjct: 256 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVV 315

Query: 121 KYLLRKGASLTAKTKAGKTPLDLA 144
           + LL +GA L A+TK G +PL +A
Sbjct: 316 ELLLERGAPLLARTKNGLSPLHMA 339

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+  G L  V+++L     S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct: 408 LHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 466

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A DD + +H A++ GH  +V+ L+ +  +    T  G  PLH A +  H+E V  LL K 
Sbjct: 467 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 526

Query: 128 ASLTAKTKAGKTPLDLA 144
           AS    TK G TPL +A
Sbjct: 527 ASQACMTKKGFTPLHVA 543

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 26/238 (10%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N +  LH AA +  LK  + I+I    SVN  D+  RT LH AA +G  E+V+ L    A
Sbjct: 106 NWQTPLHVAAANKALKCAE-IIIPMLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGA 164

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           ++ A    D  A+H+A+  GHLEVV  L++ G  +    +KG  PLH A     + +VK+
Sbjct: 165 NINAFDKKDRRALHWAAYMGHLEVVALLINHGAEVTCKDKKGYTPLHAAASNGQINIVKH 224

Query: 123 LLRKGASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNGKEKAGESETK-- 177
           LL  G  +      G T L +A     + + + L ++  +  +PN NG      +     
Sbjct: 225 LLNLGVEIDEMNIYGNTALHIACYNGQDSVVNELIDYGANVNQPNNNGFTPLHFAAASTH 284

Query: 178 -------LGDSGVEVSASSPDGK-------------RDENLKRKGDEDDIKEEASSEP 215
                  L ++G +V+  S DGK             R + L + G E D  ++  + P
Sbjct: 285 GALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTP 342

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSYLCKNKADVGAAA 68
           AA+ G L  VQ +    P ++N RD   R  TPLHLAA     EV  YL ++ ADV A  
Sbjct: 803 AAKKGCLARVQKL--CTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGADVNAQD 860

Query: 69  MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
              +  +H A+  GH+++   L+     + A  +    PLH A Q    +L   LL  GA
Sbjct: 861 KGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALLLAHGA 920

Query: 129 SLTAKTKAGKTPLDLARNEEIRSFL 153
             T K + G+TPLDLA  ++IR+ L
Sbjct: 921 DPTMKNQEGQTPLDLATADDIRALL 945

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSYLCKNKADVGAAA 68
           AA+ G L  VQ +    P ++N RD   R  TPLHLAA     EV  YL ++ ADV A  
Sbjct: 810 AAKKGCLARVQKL--CTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGADVNAQD 867

Query: 69  MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
              +  +H A+  GH+++   L+     + A  +    PLH A Q    +L   LL  GA
Sbjct: 868 KGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALLLAHGA 927

Query: 129 SLTAKTKAGKTPLDLARNEEIRSFL 153
             T K + G+TPLDLA  ++IR+ L
Sbjct: 928 DPTMKNQEGQTPLDLATADDIRALL 952

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 85/140 (60%), Gaps = 1/140 (0%)

Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           E  LH AAR+G ++ V+ +L +  L V++R +  +TPLH+A+  G+TE+V  L ++ A  
Sbjct: 465 ETALHMAARAGQVEVVRCLLRNGAL-VDARAREEQTPLHIASRLGKTEIVQLLLQHMAHP 523

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
            AA  +  + +H ++++G ++V   L+ +G +    T+KG  PLH A +   L++ K LL
Sbjct: 524 DAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLL 583

Query: 125 RKGASLTAKTKAGKTPLDLA 144
           ++ A+  +  K G TPL +A
Sbjct: 584 QRRAAADSAGKNGLTPLHVA 603

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224074506	249	predicted protein [Populus trichocarpa]	0.953	0.911	0.709	3e-86
224139114	250	predicted protein [Populus trichocarpa]	0.957	0.912	0.697	5e-86
118484962	250	unknown [Populus trichocarpa]	0.957	0.912	0.693	1e-85
356496455	251	PREDICTED: putative ankyrin repeat prote	0.987	0.936	0.658	6e-81
357484621	266	Ankyrin repeat domain-containing protein	0.957	0.857	0.650	2e-80
356531509	249	PREDICTED: ankyrin-2-like [Glycine max]	0.983	0.939	0.649	2e-79
255557701	249	ankyrin repeat-containing protein, putat	0.949	0.907	0.676	7e-79
449437799	269	PREDICTED: ankyrin-3-like [Cucumis sativ	0.974	0.862	0.641	2e-75
225427500	282	PREDICTED: tankyrase-1 isoform 1 [Vitis	0.970	0.819	0.571	3e-74
449494715	269	PREDICTED: ankyrin-3-like [Cucumis sativ	0.974	0.862	0.637	3e-74

>gi|224074506|ref|XP_002304382.1| predicted protein [Populus trichocarpa] gi|222841814|gb|EEE79361.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/234 (70%), Positives = 193/234 (82%), Gaps = 7/234 (2%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           ELHAAARSGD+KAV+SI+ SNPL++NSRDKHSRTPLHLAAWSGQ EVVSYLCK+KADVGA
Sbjct: 15  ELHAAARSGDMKAVESIVSSNPLAINSRDKHSRTPLHLAAWSGQAEVVSYLCKHKADVGA 74

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
           AAMDDM AIHFA+QKGH EVVRTL+SSG SIKA TRKGL PLHYAVQGSHLELVKYL+RK
Sbjct: 75  AAMDDMGAIHFAAQKGHSEVVRTLLSSGASIKASTRKGLTPLHYAVQGSHLELVKYLVRK 134

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK--AGESETKLGD---- 180
           GASL  +TKAG TPLDLA NEEI  FLEE E++ KK  L+GK+K  A E +T L D    
Sbjct: 135 GASLNVRTKAGMTPLDLATNEEIHVFLEESERTPKKGTLDGKDKPEASEPKTSLQDKSEN 194

Query: 181 SGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDD 234
           SG E +A   + + + N+KRKG+EDD K E SSEPK+A++ L HL+S DDTQ++
Sbjct: 195 SGGEANAGEHEEQENRNVKRKGEEDDAK-ETSSEPKRARVALNHLLSADDTQEE 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139114|ref|XP_002326771.1| predicted protein [Populus trichocarpa] gi|222834093|gb|EEE72570.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 195/235 (82%), Gaps = 7/235 (2%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           ELHAA+RSGD+KA+++I+ SNPL++NSRDKHSRTPLHLAAWSGQ E V+YLCK+KADVGA
Sbjct: 15  ELHAASRSGDMKAMETIVSSNPLAINSRDKHSRTPLHLAAWSGQAEAVTYLCKHKADVGA 74

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
           AAMDDM AIHFASQKGHLEVVRTL+SSG SIKA TRKGL PLHY VQGSHLELVKYL++K
Sbjct: 75  AAMDDMGAIHFASQKGHLEVVRTLLSSGASIKASTRKGLTPLHYGVQGSHLELVKYLVKK 134

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKA--GESETKLGD---- 180
           GASLT +TKAG TPLDLA NEEIR FLEE E++SKK  LNGK+KA   E +T L D    
Sbjct: 135 GASLTVRTKAGMTPLDLATNEEIRLFLEESEKTSKKETLNGKDKAEVSEPKTSLEDKSEY 194

Query: 181 SGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDDE 235
           SG E +A   + + +E++KRKG+ DD K E SSE K+A++ L HL+S DDTQ++E
Sbjct: 195 SGGEATAGEHEEQVNESVKRKGEADDTK-ETSSELKRARVALNHLLSADDTQEEE 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484962|gb|ABK94346.1| unknown [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 195/235 (82%), Gaps = 7/235 (2%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           ELHAA+RSGD+KA+++I+ SNPL++NSRDKHSRTPLHLAAWSGQ E V+YLCK+KADVGA
Sbjct: 15  ELHAASRSGDMKAMETIVSSNPLAINSRDKHSRTPLHLAAWSGQAEAVTYLCKHKADVGA 74

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
           AAMDDM AIHFASQKGHLEVVRTL+SSG SIKA TRKGL PLHY VQGSHLELVKYL++K
Sbjct: 75  AAMDDMGAIHFASQKGHLEVVRTLLSSGASIKASTRKGLTPLHYGVQGSHLELVKYLVKK 134

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKA--GESETKLGD---- 180
           GASLT +TKAG TPLDLA NEEIR FLEE E++SKK  LNGK+KA   E +T L D    
Sbjct: 135 GASLTVRTKAGMTPLDLATNEEIRLFLEESEKTSKKETLNGKDKAEVSEPKTSLEDKSEY 194

Query: 181 SGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDDE 235
           SG E +A   + + +E++KRKG+ DD K E S+E K+A++ L HL+S DDTQ++E
Sbjct: 195 SGGEATAGEHEEQVNESVKRKGEADDTK-ETSTELKRARVALNHLLSADDTQEEE 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496455|ref|XP_003517083.1| PREDICTED: putative ankyrin repeat protein RF_0381-like [Glycine max]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 194/249 (77%), Gaps = 14/249 (5%)

Query: 1   MGN-----REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVS 55
           MGN       +ELH AARSGDL AV SIL SNPL+VNSRDKHSRTPLHLAA+SGQ EVV+
Sbjct: 1   MGNPRKPSTADELHTAARSGDLIAVNSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVT 60

Query: 56  YLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS 115
           YLCK KADVGA+AMDDM+AIHFASQKGHLEVVR L+S+G S+KA TRKG+  LHYAVQGS
Sbjct: 61  YLCKQKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKATTRKGMTSLHYAVQGS 120

Query: 116 HLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLN--GKEKAGE 173
           H+ELVKYL +KGA+L AKTKAGKTPLDLA NEEIRSFLEE+E+S+K   L    K+KA E
Sbjct: 121 HMELVKYLAKKGANLGAKTKAGKTPLDLATNEEIRSFLEEYEKSAKNGELGKKDKDKAEE 180

Query: 174 SETKL------GDSGVEVSASSPDGKRDENLKR-KGDEDDIKEEASSEPKKAKLVLKHLV 226
           S+ K       GD   E +A++ D + +   KR KG+ED  +EE SS+PKKA++ L HL 
Sbjct: 181 SDPKTSTLGSEGDLSSEPAAAAIDEEDNVGEKRKKGNEDGTREEESSQPKKARVNLSHLQ 240

Query: 227 SEDDTQDDE 235
           S DDTQ++E
Sbjct: 241 SSDDTQEEE 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484621|ref|XP_003612598.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355513933|gb|AES95556.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|388518069|gb|AFK47096.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/252 (65%), Positives = 190/252 (75%), Gaps = 24/252 (9%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           +LHAAARSGDL AVQSILISNPL+VNSRDKHSRTPLHLAA+SGQTEVVSYLCKNKADVGA
Sbjct: 14  DLHAAARSGDLIAVQSILISNPLAVNSRDKHSRTPLHLAAFSGQTEVVSYLCKNKADVGA 73

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
           +AMDDM+AIHFA+QKGHLEVVR LVS+G S KA TRKG+ PLH+AVQGSHLELVKYL +K
Sbjct: 74  SAMDDMAAIHFAAQKGHLEVVRALVSAGASFKASTRKGVTPLHFAVQGSHLELVKYLSKK 133

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK---------------KPNLNGKEKA 171
           GASLT KTKAGKTPLDLA N+E+R+FLE +E+S+K               K N     KA
Sbjct: 134 GASLTIKTKAGKTPLDLATNDEVRAFLEGFEKSAKNGESKNEDKTEGSDPKENEESDPKA 193

Query: 172 GE-----SETKLGDSG---VEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLK 223
            E     + + LG  G    E  A+S D +  E  KRKG+EDD +E  SS PKKA++ L 
Sbjct: 194 AEESDPKASSSLGSEGNLSCEPPAASVDEESGEKEKRKGNEDDAREN-SSHPKKARVQLS 252

Query: 224 HLVSEDDTQDDE 235
           HL S DD Q++E
Sbjct: 253 HLQSSDDVQEEE 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531509|ref|XP_003534320.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/248 (64%), Positives = 190/248 (76%), Gaps = 14/248 (5%)

Query: 1   MGN-----REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVS 55
           MGN       +ELH AARSGDL AV SIL SNPL+VNSRDKHSRTPLHLAA+SGQ EVV+
Sbjct: 1   MGNPRKPSTADELHMAARSGDLIAVNSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVT 60

Query: 56  YLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS 115
           YL K+KADVGA+AMDDM+AIHFASQKGHLEVVR L+S+G S+KA TRKG+  LHYAVQGS
Sbjct: 61  YLSKHKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKAATRKGMTSLHYAVQGS 120

Query: 116 HLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESE 175
           H+ELVKYL +KGASL AKTKAGKTPLDLA N EIRSFLE++E+S+K   L  K+K    E
Sbjct: 121 HMELVKYLAKKGASLGAKTKAGKTPLDLATNGEIRSFLEDFEKSTKNGELGNKDKDKAEE 180

Query: 176 TKL--------GDSGVEVSASSPDGKRDENLKRKGDEDDIKEEASSEPKKAKLVLKHLVS 227
           + L        GD   E +A++ D   +E  KRKG+E D  EE SS+PKKA++ L HL S
Sbjct: 181 SDLKTSTLGSEGDLSSEPAAAAVDEDDNEREKRKGNEVDATEE-SSQPKKARVNLSHLQS 239

Query: 228 EDDTQDDE 235
            DDTQ++E
Sbjct: 240 SDDTQEEE 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557701|ref|XP_002519880.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223540926|gb|EEF42484.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/232 (67%), Positives = 181/232 (78%), Gaps = 6/232 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LHAAARSGDL AVQSIL  NPL+VNSRDKHSRTPLHLAAWSG   VV+YL + KADV AA
Sbjct: 18  LHAAARSGDLNAVQSILSLNPLAVNSRDKHSRTPLHLAAWSGHVHVVNYLSQQKADVSAA 77

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           AMDDM AIHFA+QKGHL+VVRTL+SSGVS+KA TRKGL PLHYA QGS+L+LVKYL++KG
Sbjct: 78  AMDDMGAIHFAAQKGHLDVVRTLLSSGVSVKATTRKGLTPLHYAAQGSNLDLVKYLVKKG 137

Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETK--LGDSGVEV 185
           ASL  KTKAGKTPLDLA NEEI  FLE+ EQSS+K NLN KEK  ES+ K  + D     
Sbjct: 138 ASLATKTKAGKTPLDLASNEEIHLFLEKSEQSSEKANLNAKEKLEESDPKPAMPDKSEIA 197

Query: 186 SASSPDGKRD--ENLKRKGDEDDIKEEASSEPKKAKLVLKHLVSEDDTQDDE 235
              +P  +    EN+KRKG+ED   +E S E K+ K+ L HL+S DDTQ+DE
Sbjct: 198 DGEAPGSEEQEAENVKRKGEED--TKETSGEQKRRKITLNHLLSADDTQEDE 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437799|ref|XP_004136678.1| PREDICTED: ankyrin-3-like [Cucumis sativus]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/254 (64%), Positives = 194/254 (76%), Gaps = 22/254 (8%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           ++LHAAAR+GDL +V SIL SNP SVNSRDKHSRTPLHLAAWSGQ EV++YLCKNKADVG
Sbjct: 17  DQLHAAARNGDLSSVISILASNPSSVNSRDKHSRTPLHLAAWSGQAEVINYLCKNKADVG 76

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           AAAMDDM+AIHFASQKGHLEVVRTL+S G S+KA TRKG+ PLHYAVQGS+LELVKYL +
Sbjct: 77  AAAMDDMAAIHFASQKGHLEVVRTLISCGGSLKASTRKGMTPLHYAVQGSYLELVKYLAK 136

Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEV 185
           KGA+L+A+TKAG+TPLDLA NEEIR FLEE+E+SSKK     K KAG++ ++   SG E 
Sbjct: 137 KGANLSARTKAGETPLDLASNEEIRLFLEEYEKSSKKEEPKDKGKAGKTHSQPTVSG-ED 195

Query: 186 SASSPDGKRDEN--------LKRKGDEDD-------------IKEEASSEPKKAKLVLKH 224
            A SP     EN         K++ DE+D             I EEA S+PKKAK+ L H
Sbjct: 196 EAPSPKANETENEEDPGVEQSKKQSDEEDQGDEQSKRKSDGTIGEEALSKPKKAKVALGH 255

Query: 225 LVSEDDTQDDEETS 238
           L++ DDTQ+D+E S
Sbjct: 256 LLTSDDTQEDDENS 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427500|ref|XP_002263861.1| PREDICTED: tankyrase-1 isoform 1 [Vitis vinifera]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/271 (57%), Positives = 189/271 (69%), Gaps = 40/271 (14%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           E++H AARSGDL  +QSI  SNPL+VNSRDKHSRTPLHLAAW+GQT+VV+YLCK+KADVG
Sbjct: 10  EDIHNAARSGDLLKLQSICSSNPLAVNSRDKHSRTPLHLAAWAGQTQVVTYLCKHKADVG 69

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           AAAMDDM AIHFA+QKGHLEVVRTL+SSG S+KA TRKG+ PLHYA QGSHL+L KYL+R
Sbjct: 70  AAAMDDMGAIHFAAQKGHLEVVRTLLSSGASVKAITRKGMTPLHYAAQGSHLDLAKYLVR 129

Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESE---------- 175
           KG SL+AK+KAGKTPLDLA +EE R+ L E E+ S+K + N K+K  ESE          
Sbjct: 130 KGGSLSAKSKAGKTPLDLAGSEEFRTVLVECERLSRKGDKNVKDKVEESEEPKPSILEKA 189

Query: 176 -------------TKLGDSGVEVSA---------------SSPDG--KRDENLKRKGDED 205
                         +  D+ V+  A               +  DG  + D ++KRK DED
Sbjct: 190 ENSDGKAAADGDGEEHEDTDVKRKADEDSEEHEDTDVKRKADEDGEVQEDTDVKRKADED 249

Query: 206 DIKEEASSEPKKAKLVLKHLVSEDDTQDDEE 236
             KEEAS  PKKA++ L HL+S D TQ++EE
Sbjct: 250 GTKEEASKVPKKARVALNHLLSADYTQENEE 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494715|ref|XP_004159626.1| PREDICTED: ankyrin-3-like [Cucumis sativus]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/254 (63%), Positives = 193/254 (75%), Gaps = 22/254 (8%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           ++LHAAAR+GDL +V SIL SNP SVNSRDKHSRTPLHLAAWSGQ EV++YLCKNKADVG
Sbjct: 17  DQLHAAARNGDLSSVISILASNPSSVNSRDKHSRTPLHLAAWSGQAEVINYLCKNKADVG 76

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           AAAMDDM+AIHFASQKGHLEVV TL+S G S+KA TRKG+ PLHYAVQGS+LELVKYL +
Sbjct: 77  AAAMDDMAAIHFASQKGHLEVVCTLISCGGSLKASTRKGMTPLHYAVQGSYLELVKYLAK 136

Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEV 185
           KGA+L+A+TKAG+TPLDLA NEEIR FLEE+E+SSKK     K KAG++ ++   SG E 
Sbjct: 137 KGANLSARTKAGETPLDLASNEEIRLFLEEYEKSSKKEEPKDKGKAGKTHSQPTVSG-ED 195

Query: 186 SASSPDGKRDEN--------LKRKGDEDD-------------IKEEASSEPKKAKLVLKH 224
            A SP     EN         K++ DE+D             I EEA S+PKKAK+ L H
Sbjct: 196 EAPSPKANETENEEDPGVEQSKKQSDEEDQGDEQSKRKSDGTIGEEALSKPKKAKVALGH 255

Query: 225 LVSEDDTQDDEETS 238
           L++ DDTQ+D+E S
Sbjct: 256 LLTSDDTQEDDENS 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2134786	243	AT4G19150 [Arabidopsis thalian	0.815	0.798	0.637	3.8e-62
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.668	0.084	0.382	2.5e-20
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.668	0.139	0.388	4.4e-20
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.668	0.085	0.376	6.3e-20
UNIPROTKB|E1BNC9	3342	ANK3 "Uncharacterized protein"	0.672	0.047	0.372	1.5e-19
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.659	0.080	0.384	1.5e-19
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.836	0.117	0.336	2e-19
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.836	0.114	0.336	2.1e-19
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.836	0.109	0.336	2.2e-19
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.663	0.147	0.378	2.3e-19

TAIR|locus:2134786 AT4G19150 [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 130/204 (63%), Positives = 160/204 (78%)

Query:     2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK 61
             G    +LH+AARSGDL AVQSI+ SNPL+VNSRDKHSRTPLHLAAW+G  EVVSYLCKNK
Sbjct:    14 GGASADLHSAARSGDLAAVQSIISSNPLAVNSRDKHSRTPLHLAAWAGHNEVVSYLCKNK 73

Query:    62 ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
             ADVGAAA DDM AIHFASQKGHLEVVRTL+S+G S+K+ TRKGL PLHYA QGSH E+VK
Sbjct:    74 ADVGAAAGDDMGAIHFASQKGHLEVVRTLLSAGGSVKSITRKGLTPLHYAAQGSHFEIVK 133

Query:   122 YLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDS 181
             YL++KGAS+ A TKAGK+P D+A N E ++FLEE E+ ++K  +N ++K     T++   
Sbjct:   134 YLVKKGASVRATTKAGKSPADVAGNAETQNFLEECEEQARKAKVNNEKK-----TEI--- 185

Query:   182 GVEVSASSPDGKRDENLKRKGDED 205
              V+  + S +G   ++LKRK  ED
Sbjct:   186 -VKPESCSNEGDV-KDLKRKDSED 207

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 62/162 (38%), Positives = 86/162 (53%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             LH A+  G L  V+++L     S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct:   441 LHVASFMGHLPIVKNLL-QRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 499

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H A++ GH  +V+ L+ +  +    T  G  PLH A +  H+E    LL KG
Sbjct:   500 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKG 559

Query:   128 ASLTAKTKAGKTPLDLA-RNEEIRSFLEEWEQSSKKPNLNGK 168
             AS    TK G TPL +A +  ++R   E   +    PN  GK
Sbjct:   560 ASQACMTKKGFTPLHVAAKYGKVR-VAELLLEHDAHPNAAGK 600

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 63/162 (38%), Positives = 86/162 (53%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             LH A+  G L  V+S+L     S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct:   407 LHVASFMGHLPIVKSLL-QREASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 465

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H A++ GH  +V+ L+ +  +    T  G  PLH A +  H+E    LL K 
Sbjct:   466 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKE 525

Query:   128 ASLTAKTKAGKTPLDLA-RNEEIRSFLEEWEQSSKKPNLNGK 168
             AS T  TK G TPL +A +  ++R   E   +    PN  GK
Sbjct:   526 ASQTCMTKKGFTPLHVAAKYGKVR-MAELLLEHDAHPNAAGK 566

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
 Identities = 61/162 (37%), Positives = 85/162 (52%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             LH A+  G L  V+++L     S N  +    TPLH+AA +G TEV  YL +NKA   A 
Sbjct:   404 LHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKANAK 462

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H A++ GH  +V+ L+ +G S    T  G  PLH A +  H++    LL K 
Sbjct:   463 AKDDQTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTALALLEKE 522

Query:   128 ASLTAKTKAGKTPLDLA-RNEEIRSFLEEWEQSSKKPNLNGK 168
             AS    TK G TPL +A +  ++R   E   +    PN  GK
Sbjct:   523 ASQACMTKKGFTPLHVAAKYGKVR-LAELLLEHDAHPNAAGK 563

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|E1BNC9 ANK3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 60/161 (37%), Positives = 84/161 (52%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             +H AA  G +  V S L+ +  S N+ +    T LH+AA SGQ EVV YL ++ A V A 
Sbjct:   408 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAK 466

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH A +  H ++  +LL  G
Sbjct:   467 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHG 526

Query:   128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK 168
             ASL   TK G TPL +A             Q S  P+  GK
Sbjct:   527 ASLAITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGK 567

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             +H AA  G +  V S L+ +  S N+ +    T LH+AA SGQ EVV YL ++ A V A 
Sbjct:   420 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAK 478

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH A +  H ++  +LL  G
Sbjct:   479 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHG 538

Query:   128 ASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQSSKKPNLNGK 168
             ASL+  TK G TPL +A      E+ S L    Q S  P+  GK
Sbjct:   539 ASLSITTKKGFTPLHVAAKYGKLEVASLLL---QKSASPDAAGK 579

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 71/211 (33%), Positives = 105/211 (49%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             +H AA  G +  V S L+ +  S N+ +    T LH+AA +GQTEVV YL +N A V A 
Sbjct:   395 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAK 453

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH + +  H ++   LL  G
Sbjct:   454 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHG 513

Query:   128 ASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQS---SKKPNLNGKEKAGESETK---- 177
             ASL   TK G TPL +A      E+ + L +   S   S K  L     A   + +    
Sbjct:   514 ASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDASGKSGLTPLHVAAHYDNQKVAL 573

Query:   178 -LGDSGVEVSASSPDGKRDENLKRKGDEDDI 207
              L D G    AS+ +G    ++  K ++ DI
Sbjct:   574 LLLDQGASPHASAKNGYTPLHIAAKKNQMDI 604

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 71/211 (33%), Positives = 105/211 (49%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             +H AA  G +  V S L+ +  S N+ +    T LH+AA +GQTEVV YL +N A V A 
Sbjct:   395 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAK 453

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH + +  H ++   LL  G
Sbjct:   454 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHG 513

Query:   128 ASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQS---SKKPNLNGKEKAGESETK---- 177
             ASL   TK G TPL +A      E+ + L +   S   S K  L     A   + +    
Sbjct:   514 ASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDASGKSGLTPLHVAAHYDNQKVAL 573

Query:   178 -LGDSGVEVSASSPDGKRDENLKRKGDEDDI 207
              L D G    AS+ +G    ++  K ++ DI
Sbjct:   574 LLLDQGASPHASAKNGYTPLHIAAKKNQMDI 604

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 71/211 (33%), Positives = 105/211 (49%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             +H AA  G +  V S L+ +  S N+ +    T LH+AA +GQTEVV YL +N A V A 
Sbjct:   395 IHVAAFMGHVNIV-SQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAK 453

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             A DD + +H +++ G  ++V+ L+  G S  A T  G  PLH + +  H ++   LL  G
Sbjct:   454 AKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVASVLLEHG 513

Query:   128 ASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQS---SKKPNLNGKEKAGESETK---- 177
             ASL   TK G TPL +A      E+ + L +   S   S K  L     A   + +    
Sbjct:   514 ASLAIITKKGFTPLHVAAKYGKIEVANLLLQKNASPDASGKSGLTPLHVAAHYDNQKVAL 573

Query:   178 -LGDSGVEVSASSPDGKRDENLKRKGDEDDI 207
              L D G    AS+ +G    ++  K ++ DI
Sbjct:   574 LLLDQGASPHASAKNGYTPLHIAAKKNQMDI 604

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 62/164 (37%), Positives = 89/164 (54%)

Query:     8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             LH AA +   + V+++L  +  S+N  D+  R PLH AA SG  E+V  L    A++ A+
Sbjct:   111 LHIAAANRATRCVETLL-PHVSSLNMADRTGRAPLHHAAQSGYQEMVKLLLNKGANLSAS 169

Query:    68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRK 126
                D   IH+A+  GHLEVV+ LVS G S K+C  ++G  PLH A    H+++VKYLLR 
Sbjct:   170 DKKDRQPIHWAAYLGHLEVVKLLVSQG-SDKSCKDKRGYTPLHAAAASGHVDVVKYLLRN 228

Query:   127 GASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNG 167
             GA +      G T L +A     E + + L     +  +PN  G
Sbjct:   229 GAEIDEPNAFGNTALHVACYTGQEAVANELVNRGANVNQPNHRG 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_III000813	hypothetical protein (249 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00051320	SubName- Full=Auxin-regulated protein-like protein; (261 aa)			•						0.501
	grail3.0053014401	hypothetical protein (105 aa)			•						0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-34
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-14
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-05
smart00248	30	smart00248, ANK, ankyrin repeats	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (314), Expect = 2e-36
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 3/125 (2%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           N+RD+  RTPLHLAA +G  EVV  L +N ADV A   D  + +H A++ GHLE+V+ L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEE 148
             G  + A  + G  PLH A +  +L++VK LL+ GA + A+ K G+TPL LA    + E
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 149 IRSFL 153
           +   L
Sbjct: 121 VVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (296), Expect = 7e-34
 Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA +G L+ V+ +L+ N   VN++D   RTPLHLAA +G  E+V  L +  ADV A 
Sbjct: 11  LHLAASNGHLEVVK-LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
             D  + +H A++ G+L+VV+ L+  G  + A  + G  PLH A +  HLE+VK LL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 92.3 bits (230), Expect = 2e-24
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 42  LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT 101
           LHLAA +G  E+V  L +  ADV     D  +A+H A++ G+LE+V+ L+  G  + A  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 102 RKGLNPLHYAVQGSHLELVKYLLRKGASLTAK 133
           + G   LH A +  +LE+VK LL  GA +  K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 8  LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
          LH AA++G+L+ V+ +L+     VN  D    T LHLAA +G  E+V  L ++ ADV A 
Sbjct: 1  LHLAAKNGNLELVK-LLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
            D  +A+H A++ G+LE+V+ L+  G  I
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 86.6 bits (215), Expect = 9e-20
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 20/160 (12%)

Query: 16  DLKAVQSILISNPLSVNSRDKHSRTPLHLAAW--SGQTEVVSYLCKNKADVGAAAMDDMS 73
           D+K +  +L+    +VN+ D +  TPL  A    S    +V YL  N A+V     D  +
Sbjct: 84  DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN 143

Query: 74  AIHFASQKGH--LEVVRTLVSSGVSIKACTR----------------KGLNPLHYAVQGS 115
            +H   +     L++++ L+  GV I A  R                 G  PLHYAV  +
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNN 203

Query: 116 HLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
           + E VKYLL  GA+     K G TPL +A     +   + 
Sbjct: 204 NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 75  IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
           +H A++ G+LE+V+ L+  G  +          LH A +  +LE+VK LL  GA + AK 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 135 KAGKTPLDLA 144
           K G T L LA
Sbjct: 59  KDGNTALHLA 68

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
           +I      +   K    PL+LA  +   +VV  L  N AD+ ++  ++ + +H+ S   +
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 84  -----LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS--HLELVKYLLRKGASLTAKTKA 136
                 E+V+ L+  G ++ A    G+ PL YA+        +V+YLL  GA++  K   
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140

Query: 137 GKTPLDLA 144
           G+  L L 
Sbjct: 141 GENLLHLY 148

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 20  VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
           +++IL    + VN +D   +T LH A   G  E +  L +  ADV     +    IH A 
Sbjct: 107 IKTILDCG-IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 80  QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKT 139
           +    ++++ L+  G         G +PLH A +      +K L+  G  +  K K G T
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT 225

Query: 140 PLDLA 144
           PL  A
Sbjct: 226 PLHNA 230

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 35/169 (20%)

Query: 20  VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
           +  +L+     VN++D +  TP+H AA  G  ++V+ L    ADV   A+DD+S +  A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 80  QKGHLEVVRTLV-----------------------------SSGVSIKACTRKGLNPLHY 110
              +++ ++ ++                              +G S+ +       PLH+
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 111 AVQGSHL-ELVKYLLRKGASLTAKTKAGKTPLDL-ARN----EEIRSFL 153
           A Q   L  LV  LL +GA + AK   G+TPL L A+N    E IR+ +
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI 328

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.0 bits (160), Expect = 5e-13
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 8/187 (4%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
             L  A       +   + +     + +RD   R PLH AA  G  ++V  L  + ADV 
Sbjct: 41  LYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN 100

Query: 66  AAAMDDMSAIHFASQKGHL-----EVVRTLVSSGVSIKACTRKGLN---PLHYAVQGSHL 117
           A   D  + +H A+  G+      EV + L+ +G  +     +  +   PLH+A      
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 118 ELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETK 177
           ++V+ LL  GA   ++   G T LD A        ++         +L      G +   
Sbjct: 161 DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANAN 220

Query: 178 LGDSGVE 184
           +    + 
Sbjct: 221 VSKRNIL 227

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 61.5 bits (150), Expect = 5e-13
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 72  MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
            +A+H A+  G LE+V+ L+  GV I      G   LH A +  +LE++K LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 63.9 bits (155), Expect = 7e-12
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           E ELH A   GD+KAV+ +L     + +   K   TPLHLA    + +++  L    AD 
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR----KGLNPLHYAVQGSHLELV 120
                D  S +H A   G ++ +  L+      KAC       G  PL  A+    + + 
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDH----KACLDIEDCCGCTPLIIAMAKGDIAIC 184

Query: 121 KYLLRKGASLTAKTKAG 137
           K LL  GA++    K G
Sbjct: 185 KMLLDSGANIDYFGKNG 201

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSGQ---TEVVSYLCKNKADVGAAAMDDMSAIH-FAS 79
           L++    VN R ++ +TPLHL          ++V  L +  ADV A      + +H +  
Sbjct: 33  LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLY 92

Query: 80  QKGHLEVVRTLVSSGVSIKACTRKGLNPLH-Y-AVQGSHLELVKYLLRKGASLTAKTKAG 137
               L+V++ L+ +G  + A  + G  PLH Y +    + ++++ LLRKGA + A    G
Sbjct: 93  NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG 152

Query: 138 KTPLD 142
            TPL 
Sbjct: 153 MTPLA 157

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 13  RSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTE-VVSYLCKNKADVGAAAMDD 71
            S  +K +  +L+     VN+ ++   TPLHL  ++  T  V+  L K  ADV A     
Sbjct: 58  SSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG 117

Query: 72  MSAIH--FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH---LELVKYLLRK 126
            + +H   +    + +V+R L+  G  + A    G+ PL   +  S    +EL++ L+  
Sbjct: 118 RTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL-KSRNANVELLRLLIDA 176

Query: 127 GASLTAKTKAGKTPLD 142
           GA + A     ++ L 
Sbjct: 177 GADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 23  ILISNPLSVNSRDKHSRTPLHLAAWSGQT--EVVSYLCKNKADVGAAAMDDMSA--IHFA 78
           +L+     VN+ D +  TPL +   S     E++  L    ADV A      S    H  
Sbjct: 137 LLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ 196

Query: 79  SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLE--LVKYLLRKGASLTAKTKA 136
           S K    +VR L+ +G    A    G  PLH    GS  +  LV  LL  G S+ A+ + 
Sbjct: 197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRY 256

Query: 137 GKTPLDLA 144
           G+TPL  A
Sbjct: 257 GQTPLHYA 264

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.0 bits (128), Expect = 6e-10
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 8  LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
          LH AA SG L+ V+  L+   + +N  D+   T LH+AA +G  EV+  L
Sbjct: 5  LHKAAISGRLELVKY-LLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 8   LHAAA--RSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ--TEVVSYLCKNKAD 63
           L  A   +S     V   L+ N  +VN ++      LHL   S +   +++  L     D
Sbjct: 110 LLYAISKKSNSYSIV-EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168

Query: 64  VGAA--------------AMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP 107
           + A                 D    + +H+A    + E V+ L+  G +     + G  P
Sbjct: 169 INAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 228

Query: 108 LHYAVQGSHLELVKYLLRKGAS 129
           LH A+  ++ E+ K LL  G S
Sbjct: 229 LHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           A RSGD K V+ + I +   +N  +     PL  A   G  +++  L  N  D     + 
Sbjct: 42  AIRSGDAKIVE-LFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIP 100

Query: 71  DM-----------------------SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP 107
            +                       + +H+A +KG LE ++ L   G  +      G  P
Sbjct: 101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP 160

Query: 108 LHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
           +H A++ +  +++K LL KGA    K   G++PL
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+     K +   L+    +VN+RD   +TP+H AA      +++ L    AD+ A 
Sbjct: 345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404

Query: 68  AMDDMSAIHFA-SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS-HLELVKYLLR 125
           +    +A+HFA         V+TL+  G ++ +  +    PLHYA + +  L++++ LL 
Sbjct: 405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464

Query: 126 KGASLTAKTKAGKTPLDLA 144
            GA + A     + PL +A
Sbjct: 465 NGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 102 RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
             G  PLH A +   LELV++LL+ G  L  +   G T LDLA
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 23  ILISNPLSVNSRDKHS-RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK 81
           +L+S    +N +D+H   T LH A  +    +   L    A+V      + S +H A + 
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 82  GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL--ELVKYLLRKGASLTAK-TKAGK 138
            +  +V  L+ +G S  A  + G  PLH +V G     +++K LL  G  + AK    G 
Sbjct: 212 YNKPIVHILLENGASTDARDKCGNTPLHISV-GYCKDYDILKLLLEHGVDVNAKSYILGL 270

Query: 139 TPLDLA-RNEEIRSFLEEW 156
           T L  + ++E     L E+
Sbjct: 271 TALHSSIKSERKLKLLLEY 289

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ-TEVVSYLCKNKADVGAAAM 69
           A R+ DL+    +L     SVNS D    TPLH A+ +   + +V  L +  ADV A  +
Sbjct: 247 AIRNEDLET-SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI 305

Query: 70  DDMSAIHFASQKGH-LEVVRTLVSSGVSIKACTRKGLNPLHYA-VQGSHLELVKYLLRKG 127
              + ++  ++ G+  E +RTL+  G  + A  R  + PLH A     + ++V  LL  G
Sbjct: 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG 365

Query: 128 ASLTAKTKAGKTPLDLA 144
           A++ A+    KTP+  A
Sbjct: 366 ANVNARDYCDKTPIHYA 382

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 36/173 (20%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGA 66
           LH A+++  L  +   L+     VN+++    TPL+L A +G  TE +  L    ADV A
Sbjct: 277 LHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA 336

Query: 67  A--------------------------------AMD--DMSAIHFASQKGHLEVVRTLVS 92
           A                                A D  D + IH+A+ + ++ ++ TL+ 
Sbjct: 337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396

Query: 93  SGVSIKACTRKGLNPLHYAVQGSHLEL-VKYLLRKGASLTAKTKAGKTPLDLA 144
            G  I+A ++K    LH+A+ G++  + VK L+ +GA++ +K K   TPL  A
Sbjct: 397 YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 39 RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
          RT LH AA SG+ E+V YL +   D+     D  +A+H A++ G+LEV++ L+
Sbjct: 2  RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 22/165 (13%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLH--LAAWSGQTEVVSYLCKNKADVG 65
           LH    +     V  +LI     VN++DK  RTPLH  L+ ++   +V+  L +  ADV 
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 66  AAAMDDMSAIH-FASQKG-HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLE----- 118
           A  +  M+ +      +  ++E++R L+ +G  + A   +  + LH+     HL+     
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH-----HLQSFKPR 201

Query: 119 --LVKYLLRKGASLTAKTKAGKTPLDLA------RNEEIRSFLEE 155
             +V+ L+R G    A    G TPL         +   +   L  
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA 246

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 24 LISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFA 78
          L+ + P+ +N+ D +  TPLHLAA  G  E+V +L K   D+     D ++A+  A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A + GDL++++ +L      VN  D +   P+H+A      +++  L +  A     
Sbjct: 128 LHYAIKKGDLESIK-MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK 186

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  S +H A++ G    ++ L+  G  I    + G  PLH A+   H      LL   
Sbjct: 187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI--IHNRSAIELLINN 244

Query: 128 ASLTAKTKAGKTPLDLARN 146
           AS+  +   G TPL  A N
Sbjct: 245 ASINDQDIDGSTPLHHAIN 263

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 50  QTEVVSYLCKNKADVGAAAMD-DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
           + E+   L    AD+         +A+H+A++     +   L+S G ++    +   +PL
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 109 HYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           H+AV+  +  +V  LL  GAS  A+ K G TPL ++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK 135
            G  PLH A +  HLE+VK LL  GA + A+ K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL   A SGD    + IL++     N RD   RTPLH+A  +G  +VV  L +  AD   
Sbjct: 85  ELCQLAASGDAVGAR-ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL 143

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVS 92
              D  + +  A + G  EVV+ L  
Sbjct: 144 LDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 23/154 (14%)

Query: 14  SGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-- 71
           SGD++A++ I+ +    +N     + TPL  A  SG  ++V    K+ AD+         
Sbjct: 11  SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70

Query: 72  --MSAIHFASQK-------------------GHLEVVRTLVSSGVSIKACTRKGLNPLHY 110
             ++AI   +                        ++++T++  G+ +     +    LHY
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130

Query: 111 AVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           A++   LE +K L   GA +  +   G  P+ +A
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA 164

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 104 GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           G   LH A     LELVKYLL KG  +    + G T L +A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 8   LHAAARSGDLKA--VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH+ A     K   V  +LI+  +S+N+R+++ +TPLH AA          L    AD+ 
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVS---SGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           A + D  + +    +  +   VR  ++   S  ++ A               +    V  
Sbjct: 285 AVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAATLNTASVAGGDIPSDATRLCVAK 344

Query: 123 -LLRKGASLTAK 133
            +LR   SL  +
Sbjct: 345 VVLRGAFSLLPE 356

Length = 471

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 20  VQSILISNPLSVNSRDKHSRTPLHLAAWSG---QTEVVSYLCKNKADVGAAAMDDMSAIH 76
           +  ILI N   +N ++    TPL+    +G     E++ ++ +N AD      D  + + 
Sbjct: 91  IVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQ 150

Query: 77  FASQKGH---LEVVRTLVSSGVSIKACTRK-GLNPLH----YAVQGSHLELVKYLLRKGA 128
              Q  H   +E+++ L+  GV I     K   + LH    Y +     +++K  +  G 
Sbjct: 151 VYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF 210

Query: 129 SLTAKTKAGKTPL 141
            +  + K+ K   
Sbjct: 211 IINKENKSHKKKF 223

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 32/143 (22%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKADV------GAAAM-DDMSAIH----------- 76
           D   RTPLH+AA  G  + V  L K+  +V      G  A+ + +SA H           
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614

Query: 77  -------------FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
                         A+++  L  ++ L+  G+++ +   +G   L  A+   H+++V+ L
Sbjct: 615 SISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Query: 124 LRKGASLT-AKTKAGKTPLDLAR 145
           +  GA +  A T    +P +L  
Sbjct: 675 IMNGADVDKANTDDDFSPTELRE 697

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 39 RTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           TPLHLAA +G  EVV  L +  ADV A
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 72  MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
            + +H A++ G LE+V+ L+  GV +      GL  L  A
Sbjct: 17  NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 47/195 (24%), Positives = 68/195 (34%), Gaps = 36/195 (18%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC--KNKADVG 65
           LH A  + +L  V+S+L +   +VN  D    TPLH+         +  +    NK  V 
Sbjct: 41  LHQAVEARNLDVVKSLL-TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 66  AA--AMDDM---------SAIHFASQKG------------------HLEVVRTLVSSGVS 96
               A+ D            I     K                     E+ + L+S G  
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 97  IKACTRKGLN-PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSF 152
           I    R   N  LHYA +     L + LL  GA++    K   +PL  A    N+ I   
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 153 LEEWEQSSKKPNLNG 167
           L E   S+   +  G
Sbjct: 220 LLENGASTDARDKCG 234

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 33/68 (48%)

Query: 87  VRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARN 146
            R L++ G         G  PLH A    H+++V+ LL  GA  T   K GKTPL+LA  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 147 EEIRSFLE 154
              R  ++
Sbjct: 158 NGFREVVQ 165

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AA+  DL A++ +L    L+V+S D    T L +A      ++V  L  N ADV  A  D
Sbjct: 629 AAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687

Query: 71  D 71
           D
Sbjct: 688 D 688

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
            G  PLH A +  +LE+VK LL KGA + A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 8  LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLA 45
          LH AA+ G L+ VQ  L+   + +N RD    T L LA
Sbjct: 20 LHLAAKYGALELVQ-WLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 37 HSRTPLHLAAWSGQTEVVSYLCKNKADV 64
            RTPLHLAA +G  EVV  L    AD+
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 39 RTPLHLAAWSGQTEVVSYLCKNKADV 64
           TPLHLAA +G  E+V  L ++ AD+
Sbjct: 3  NTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
           D  + +H A++ GHLEVV+ L+ +G  + A  +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
            G  PLH A +  +LELVK LL  GA + A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 15/169 (8%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N E  LH AA  GD   ++ +LI +   + ++ K+  TPLH A    ++ +   L  N A
Sbjct: 189 NGESPLHNAAEYGDYACIK-LLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE--LLINNA 245

Query: 63  DVGAAAMDDMSAIHFASQ-KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQG-SHLELV 120
            +    +D  + +H A      ++++  L+     I     KG NP+  A +  +   ++
Sbjct: 246 SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVI 305

Query: 121 KYLLRKGASLTAKTKAGKTP-------LDLARNEEIRSFLEEWEQSSKK 162
           K ++   A+     +A K         +++  N+E   F++E  +  + 
Sbjct: 306 KDII---ANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNEEIED 351

Length = 434

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 31  VNSRDKHSRTPLH--LAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHF---ASQKGHL 84
           VN  +    TP+   L       E++ +L +N ADV     D+ +SA+H     ++    
Sbjct: 44  VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP 103

Query: 85  EVVRTLVSSGVSIKACTRKGLNPLH-YAVQGS-HLELVKYLLRKGASLTAKTKAGK---- 138
           E+++ L+ SG SI      G N LH Y    +  + ++K L+  G S   K         
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163

Query: 139 TPLDLARNEEIRSFLEE 155
           + +    +++I  FL  
Sbjct: 164 SYILFHSDKKIFDFLTS 180

Length = 209

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 36/138 (26%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A +  +   V  IL+ N  S ++RDK   TPLH++        V Y CK+       
Sbjct: 205 LHHAVKHYNKPIVH-ILLENGASTDARDKCGNTPLHIS--------VGY-CKD------- 247

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA-CTRKGLNPLHYAVQGSHLELVKYLLRK 126
                            ++++ L+  GV + A     GL  LH +++      +K LL  
Sbjct: 248 ----------------YDILKLLLEHGVDVNAKSYILGLTALHSSIKSE--RKLKLLLEY 289

Query: 127 GASLTAKTKAGKTPLDLA 144
           GA + +      TPL  A
Sbjct: 290 GADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 84  LEVVRTLVSSGVSIKACTRKGLN--PLHYAVQGSH---LELVKYLLRKGASLTAKTKAGK 138
           +E VR L+++G  +    R      PLH  +  S     ++V+ LL  GA + A  + G 
Sbjct: 27  VEEVRRLLAAGADVN--FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGF 84

Query: 139 TPLDL 143
           TPL L
Sbjct: 85  TPLHL 89

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 70 DDMSAIHFASQKGHLEVVRTLVSSGVSI 97
          D  + +H A++ G+LEVV+ L+  G  I
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG-------- 82
           +N  D   RT L+ A ++G  ++VS+L +N A+V A   +  + +  A  +G        
Sbjct: 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRET 273

Query: 83  HLEVVRTLVSSGVSIKACTRKGLN 106
           HL+++  L+   +SI       LN
Sbjct: 274 HLKILEILLREPLSIDCIKLAILN 297

Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
PHA02741	169	hypothetical protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.78
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.66
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.64
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.61
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.6
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.59
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.59
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.59
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.55
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.22
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.15
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.11
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.08
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.06
PF13606	30	Ank_3: Ankyrin repeat	99.04
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.02
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.98
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.96
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.91
KOG0522	560	consensus Ankyrin repeat protein [General function	98.88
KOG0522	560	consensus Ankyrin repeat protein [General function	98.86
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.86
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.85
KOG0511	516	consensus Ankyrin repeat protein [General function	98.72
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.7
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.62
KOG2384	223	consensus Major histocompatibility complex protein	98.61
KOG2384	223	consensus Major histocompatibility complex protein	98.58
KOG0511	516	consensus Ankyrin repeat protein [General function	98.55
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.53
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.4
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.27
KOG2505	591	consensus Ankyrin repeat protein [General function	98.06
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.54
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.39
KOG2505	591	consensus Ankyrin repeat protein [General function	97.28
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.99
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.83
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.92
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.73
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.56

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-37  Score=223.90  Aligned_cols=166  Identities=30%  Similarity=0.443  Sum_probs=156.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN-KADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      +|+||||+||..|+.+++..||...+..+|.+|..||||||+||..|+.++|+.|+.+ |+++|..+..|.||||||+..
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK  116 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC
Confidence            7899999999999999999888788899999999999999999999999999999999 999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |..+++++|+++|+.++.+|..|.||||-|+..|..+++++|+..|+.+|.+|..|+||||.|.-.+..+.-.+|...++
T Consensus       117 ~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA  196 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA  196 (226)
T ss_pred             ChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999977778888888888887


Q ss_pred             CCCCCCC
Q 041573          162 KPNLNGK  168 (238)
Q Consensus       162 ~~~~~~~  168 (238)
                      +.....+
T Consensus       197 d~~~edk  203 (226)
T KOG4412|consen  197 DTDREDK  203 (226)
T ss_pred             ceeeccc
Confidence            6655544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-34  Score=208.51  Aligned_cols=151  Identities=29%  Similarity=0.415  Sum_probs=143.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .||||||.||..|+.++|+.|+.+.+.++|..+..|.|+||||+..|..+++++|+++|+.++++|..|.||||-|+..|
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc
Confidence            69999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                      ..+++++|+..|+.+|.+|+.|+||||.|...|+.++..+|+++|++++..|..| ||+.+|+..=...+.+
T Consensus       151 klkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  151 KLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             chhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988 9999887654443333

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=218.71  Aligned_cols=163  Identities=20%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCc-hHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM-SAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~   81 (238)
                      +++||||.|+..|+.++++ +|...|++++.+|..|.||||+|+..|+.+++++|+.+|++++..+..|+ ||||+|+..
T Consensus        60 d~~TpLh~Aa~~g~~eiV~-lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVK-ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHc
Confidence            3567777777777777776 44456677777777777777777777777777777777777776666663 677777777


Q ss_pred             CCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCH-HHhhcchhHHHHHHHHHhh
Q 041573           82 GHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTP-LDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tp-l~~A~~~~~~~~~~~l~~~  159 (238)
                      |+.+++++|+.++.+.  .+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..+..+++++|+..
T Consensus       139 g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        139 NDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             CCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            7777777777765432  12 246777777777777777777777777777777777766 7777777777777777777


Q ss_pred             cCCCCCCCC
Q 041573          160 SKKPNLNGK  168 (238)
Q Consensus       160 ~~~~~~~~~  168 (238)
                      +.+.+....
T Consensus       217 Ga~in~~~~  225 (284)
T PHA02791        217 DINIYSVNL  225 (284)
T ss_pred             CCCCccCcc
Confidence            776655443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-31  Score=213.81  Aligned_cols=161  Identities=17%  Similarity=0.159  Sum_probs=146.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+|+..|+.++++ +|...+++++..+  |.||||+|+..|+.+++++|+..|++++.+|..|+||||+|+..|
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~-~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVC-TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHH-HHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            6899999999999999999 5557788888764  789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCC-cHHHHHHHCCCHHHHHHHHhcCCCccccC-CCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGL-NPLHYAVQGSHLELVKYLLRKGASLTAKT-KAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      +.+++++|+.+|++++.++..|+ ||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..+..+++++|++.+
T Consensus       106 ~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g  183 (284)
T PHA02791        106 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYM  183 (284)
T ss_pred             CHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999998885 8999999999999999999997653  23 35899999999999999999999999


Q ss_pred             CCCCCCCC
Q 041573          161 KKPNLNGK  168 (238)
Q Consensus       161 ~~~~~~~~  168 (238)
                      ++++....
T Consensus       184 Ad~n~~d~  191 (284)
T PHA02791        184 TSTNTNNS  191 (284)
T ss_pred             CCCCcccC
Confidence            88776544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.5e-30  Score=199.06  Aligned_cols=165  Identities=21%  Similarity=0.223  Sum_probs=146.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCcCccc-cCCchHHHHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG--QTEVVSYLCKNKADVGAAA-MDDMSAIHFA   78 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A   78 (238)
                      +...+|||.|+..|++++|+.|+..    ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            4578999999999999999977643    5677889999999999854  8999999999999999997 4899999998


Q ss_pred             HHc---CCHHHHHHHHHCCCCccccccCCCcHHHHHHH--CCCHHHHHHHHhcCCCccccCCCCCCHHHh-hcchhHHHH
Q 041573           79 SQK---GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ--GSHLELVKYLLRKGASLTAKTKAGKTPLDL-ARNEEIRSF  152 (238)
Q Consensus        79 ~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~-A~~~~~~~~  152 (238)
                      +..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||. |+..+..++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            764   47999999999999999999999999999986  468999999999999999999999999996 566778999


Q ss_pred             HHHHHhhcCCCCCCCCCc
Q 041573          153 LEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       153 ~~~l~~~~~~~~~~~~~~  170 (238)
                      +++|+..+.+++.....+
T Consensus       175 v~~Ll~~Gadi~~~d~~g  192 (209)
T PHA02859        175 FDFLTSLGIDINETNKSG  192 (209)
T ss_pred             HHHHHHcCCCCCCCCCCC
Confidence            999999998877655443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=219.89  Aligned_cols=166  Identities=20%  Similarity=0.238  Sum_probs=124.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcC-ccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG-AAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   81 (238)
                      +|.||||.|+..|+.++++ +|...|++++..+..+.||||+|+..|+.+++++|++.|+.++ ..+..|.||||+|+..
T Consensus        34 ~g~tpL~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  112 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIK-LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL  112 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence            5677777777777777776 4445666666666666666777766666666666666665543 3345677888888888


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.|++.+.
T Consensus       113 ~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga  192 (413)
T PHA02875        113 KKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA  192 (413)
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCCCCCCC
Q 041573          162 KPNLNGKE  169 (238)
Q Consensus       162 ~~~~~~~~  169 (238)
                      +++.....
T Consensus       193 ~~n~~~~~  200 (413)
T PHA02875        193 NIDYFGKN  200 (413)
T ss_pred             CCCcCCCC
Confidence            77655443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.9e-30  Score=222.98  Aligned_cols=163  Identities=26%  Similarity=0.363  Sum_probs=144.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCH--------------------------------
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQT--------------------------------   51 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~--------------------------------   51 (238)
                      +.||||.||..|+.++|+.|+ ..|+++|.+|..|.||||+||..|+.                                
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll-~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLL-TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            568999999999999998554 67899999999999999999876543                                


Q ss_pred             --------------------------------HHHHHHHHCCCCcCccccC-CchHHHHHHHcCCHHHHHHHHHCCCCcc
Q 041573           52 --------------------------------EVVSYLCKNKADVGAAAMD-DMSAIHFASQKGHLEVVRTLVSSGVSIK   98 (238)
Q Consensus        52 --------------------------------~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   98 (238)
                                                      +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n  195 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN  195 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC
Confidence                                            2677778889999999888 9999999999999999999999999999


Q ss_pred             ccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcch-hHHHHHHHHHhhcCCCCCCC
Q 041573           99 ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE-EIRSFLEEWEQSSKKPNLNG  167 (238)
Q Consensus        99 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~l~~~~~~~~~~~  167 (238)
                      ..|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. +..+++++|++.+.+.+...
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            9999999999999999999999999999999999999999999999865 68899999999988876544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=6.8e-31  Score=221.38  Aligned_cols=159  Identities=33%  Similarity=0.483  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-cCCchHHHHHHHcCCHH
Q 041573            7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-MDDMSAIHFASQKGHLE   85 (238)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~   85 (238)
                      .++.|++.|.++.|+.++...+.+++..|.+|-|+||+|+.+++.+++++|+++|+++|... ..+.||||+|+++|+..
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence            34455555555555544443355555555555555555555555555555555555555554 33455555555555555


Q ss_pred             HHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCC
Q 041573           86 VVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNL  165 (238)
Q Consensus        86 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~  165 (238)
                      +|.+|+++|++++.+|..|.||||+|++.|+.-+|-+|+.+|++++.+|.+|+|||++|+.++....+..|+..+.....
T Consensus       127 vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~  206 (600)
T KOG0509|consen  127 VVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLL  206 (600)
T ss_pred             HHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccc
Confidence            55555555555555555555555555555555555555555555555555555555555555544444444444444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=217.45  Aligned_cols=165  Identities=25%  Similarity=0.374  Sum_probs=146.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA--------------------   62 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~--------------------   62 (238)
                      .|.||||.|+..|+.++|+ +|...|++++..+..|.||||+|+..|+.+++++|+++|+                    
T Consensus        34 ~~~tpL~~A~~~g~~~iv~-~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVE-LFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            5789999999999999998 4557889999999999999999999999998888887654                    


Q ss_pred             ---CcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCC
Q 041573           63 ---DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKT  139 (238)
Q Consensus        63 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t  139 (238)
                         +++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t  192 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES  192 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence               46677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHhhcCCCCCCCC
Q 041573          140 PLDLARNEEIRSFLEEWEQSSKKPNLNGK  168 (238)
Q Consensus       140 pl~~A~~~~~~~~~~~l~~~~~~~~~~~~  168 (238)
                      |||+|+..+..+++++|++.+...+....
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~  221 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNHIMNKCK  221 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence            99999999999999999988877654443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.6e-30  Score=216.93  Aligned_cols=164  Identities=25%  Similarity=0.326  Sum_probs=151.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.||||.|+..|+.++++.|+.......+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~  146 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG  146 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence            57899999999999999996665443344556678999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCC-CHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGK-TPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..+..+++++|+..+.
T Consensus       147 ~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga  226 (413)
T PHA02875        147 DIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA  226 (413)
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence            99999999999999999999999999999999999999999999999999998875 89999999999999999999999


Q ss_pred             CCCCC
Q 041573          162 KPNLN  166 (238)
Q Consensus       162 ~~~~~  166 (238)
                      +++..
T Consensus       227 d~n~~  231 (413)
T PHA02875        227 DCNIM  231 (413)
T ss_pred             CcchH
Confidence            88754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.5e-29  Score=194.05  Aligned_cols=146  Identities=18%  Similarity=0.243  Sum_probs=132.5

Q ss_pred             CchHHHHHHHHcC--CHHHHHHHHHhCCCCcccCC-CCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCccccCCchHHH
Q 041573            3 NREEELHAAARSG--DLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAAAMDDMSAIH   76 (238)
Q Consensus         3 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~L~   76 (238)
                      .|.||||.|+..+  +.++++ +|.+.|++++.++ ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||
T Consensus        50 ~g~TpLh~a~~~~~~~~eiv~-~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh  128 (209)
T PHA02859         50 LYETPIFSCLEKDKVNVEILK-FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLH  128 (209)
T ss_pred             cCCCHHHHHHHcCCCCHHHHH-HHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            5889999999865  899998 6668899999997 5899999998764   4799999999999999999999999999


Q ss_pred             HHHH--cCCHHHHHHHHHCCCCccccccCCCcHHHH-HHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhH
Q 041573           77 FASQ--KGHLEVVRTLVSSGVSIKACTRKGLNPLHY-AVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEI  149 (238)
Q Consensus        77 ~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  149 (238)
                      +|+.  .++.+++++|++.|++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|+|||++|...+.
T Consensus       129 ~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        129 MYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             HHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhhh
Confidence            9876  468999999999999999999999999996 567889999999999999999999999999999987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-29  Score=218.50  Aligned_cols=169  Identities=28%  Similarity=0.369  Sum_probs=139.0

Q ss_pred             CchHHHHHHH--HcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAA--RSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG--QTEVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      .|.||||.|+  ..|+.++++ +|...|++++..+..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+|
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A  183 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVE-YLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIA  183 (480)
T ss_pred             CCCchhhHHHhcccChHHHHH-HHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence            4778888888  888888888 445678888888888888888888888  88888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHCCCCccccccCC------CcHHHHHHHCCC--HHHHHHHHhcCCCccccCCCCCCHHHhhcchhHH
Q 041573           79 SQKGHLEVVRTLVSSGVSIKACTRKG------LNPLHYAVQGSH--LELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR  150 (238)
Q Consensus        79 ~~~~~~~~v~~Ll~~g~~~~~~~~~g------~t~L~~A~~~g~--~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  150 (238)
                      +..|+.+++++|+++|++++..+..|      .||||+|+..|+  .+++++|+++|++++.+|..|.||||+|+..+..
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~  263 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP  263 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            88888888888888888888887777      788888888888  8888888888888888888888888888888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCcCC
Q 041573          151 SFLEEWEQSSKKPNLNGKEKAG  172 (238)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~~~~~  172 (238)
                      ++++.|++.+.+++.....+..
T Consensus       264 ~iv~~Ll~~gad~n~~d~~g~t  285 (480)
T PHA03100        264 EFVKYLLDLGANPNLVNKYGDT  285 (480)
T ss_pred             HHHHHHHHcCCCCCccCCCCCc
Confidence            8888888888876665544433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.6e-29  Score=216.27  Aligned_cols=149  Identities=25%  Similarity=0.292  Sum_probs=121.5

Q ss_pred             HHhCCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q 041573           24 LISNPLSVNSRDKH-SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR  102 (238)
Q Consensus        24 l~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  102 (238)
                      |...|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|.
T Consensus       153 Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~  232 (477)
T PHA02878        153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK  232 (477)
T ss_pred             HHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Confidence            33456777777777 88888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCcHHHHHHHC-CCHHHHHHHHhcCCCccccCC-CCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCcc
Q 041573          103 KGLNPLHYAVQG-SHLELVKYLLRKGASLTAKTK-AGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGES  174 (238)
Q Consensus       103 ~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (238)
                      .|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|+  +..+++++|++.+++++.....+..+.
T Consensus       233 ~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~~~~v~~Ll~~gadin~~d~~g~TpL  304 (477)
T PHA02878        233 CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KSERKLKLLLEYGADINSLNSYKLTPL  304 (477)
T ss_pred             CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            888888888865 688888888888888888875 7888888884  445778888888888777666554443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-29  Score=218.09  Aligned_cols=161  Identities=34%  Similarity=0.507  Sum_probs=154.4

Q ss_pred             CchHHHHHHHHcC--CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCC------chH
Q 041573            3 NREEELHAAARSG--DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD------MSA   74 (238)
Q Consensus         3 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g------~t~   74 (238)
                      .|.||||.|+..|  +.++++ +|...|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|      .||
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~-~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~  218 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILK-LLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETP  218 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHH-HHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhH
Confidence            6899999999999  999998 6667899999999999999999999999999999999999999999888      899


Q ss_pred             HHHHHHcCC--HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHH
Q 041573           75 IHFASQKGH--LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF  152 (238)
Q Consensus        75 L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  152 (238)
                      ||+|+..|+  .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..++
T Consensus       219 l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~i  298 (480)
T PHA03100        219 LHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEI  298 (480)
T ss_pred             HHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHH
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC
Q 041573          153 LEEWEQSSKKPN  164 (238)
Q Consensus       153 ~~~l~~~~~~~~  164 (238)
                      ++.|++.+.+.+
T Consensus       299 v~~Ll~~g~~i~  310 (480)
T PHA03100        299 FKLLLNNGPSIK  310 (480)
T ss_pred             HHHHHhcCCCHH
Confidence            999999987654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=212.02  Aligned_cols=166  Identities=29%  Similarity=0.341  Sum_probs=153.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|-++||+|+.+|++++++ +|+.+++++|... .-+.||||+|++.|++.++.+|+++||+++.+|.+|.+|||+|+..
T Consensus        77 ~g~tlLHWAAiNNrl~v~r-~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen   77 EGVTLLHWAAINNRLDVAR-YLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             CCccceeHHHHcCcHHHHH-HHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence            5789999999999999999 6668899999998 6789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC-CCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT-KAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      |+..+|-+|+.+|++++.+|.+|+||||+|+..|+...++.|+..|+.+...| ..|.||||+|+-.++...+.++++.+
T Consensus       156 ~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~  235 (600)
T KOG0509|consen  156 GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG  235 (600)
T ss_pred             CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcC
Confidence            99999999999999999999999999999999999888999999999999998 99999999999999999999666665


Q ss_pred             CCCCCCCCC
Q 041573          161 KKPNLNGKE  169 (238)
Q Consensus       161 ~~~~~~~~~  169 (238)
                      ........+
T Consensus       236 ~~~d~~~~~  244 (600)
T KOG0509|consen  236 ADLDKTNTN  244 (600)
T ss_pred             CcccccccC
Confidence            655555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.2e-29  Score=212.40  Aligned_cols=169  Identities=21%  Similarity=0.328  Sum_probs=151.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.||||.|+..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~-~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g  201 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIK-MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG  201 (434)
T ss_pred             CCccHHHHHHHCCCHHHHH-HHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            5889999999999999999 555789999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchh-HHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE-IRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~-~~~~~~~l~~~~~  161 (238)
                      +.+++++|++.|++++.++..|.||||+|+..+. .++.+|+ .|++++.+|..|.||||+|+..+ ..+++++|+..+.
T Consensus       202 ~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga  279 (434)
T PHA02874        202 DYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA  279 (434)
T ss_pred             CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC
Confidence            9999999999999999999999999999998875 4566655 68999999999999999998764 7789999999988


Q ss_pred             CCCCCCCCcCCcc
Q 041573          162 KPNLNGKEKAGES  174 (238)
Q Consensus       162 ~~~~~~~~~~~~~  174 (238)
                      +.+.....+..+.
T Consensus       280 d~n~~d~~g~TpL  292 (434)
T PHA02874        280 DISIKDNKGENPI  292 (434)
T ss_pred             CCCCCCCCCCCHH
Confidence            8877766555443

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=5.9e-29  Score=212.85  Aligned_cols=165  Identities=18%  Similarity=0.272  Sum_probs=136.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCcCc-cccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG--QTEVVSYLCKNKADVGA-AAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~   79 (238)
                      +|+||||+|+..|+.++++ +|+..|+++|.+|..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||| |+
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~-lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVA-MLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence            6889999999999999998 555678999999999999999988765  47889999999999885 5788899997 55


Q ss_pred             HcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCC--CHHHHHHHHhcCCCccccCCCCCCHHHhhcchh--HHHHHHH
Q 041573           80 QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS--HLELVKYLLRKGASLTAKTKAGKTPLDLARNEE--IRSFLEE  155 (238)
Q Consensus        80 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~--~~~~~~~  155 (238)
                      ..++.+++++|+..|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..+  ..+++++
T Consensus       149 ~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l  228 (446)
T PHA02946        149 TDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL  228 (446)
T ss_pred             HCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence            668889999999999999999999999999988654  468999999999999999999999999998764  7778887


Q ss_pred             HHhhcCCCCCCCCCc
Q 041573          156 WEQSSKKPNLNGKEK  170 (238)
Q Consensus       156 l~~~~~~~~~~~~~~  170 (238)
                      |+. +.+.+.....+
T Consensus       229 Ll~-gadin~~d~~G  242 (446)
T PHA02946        229 LLP-STDVNKQNKFG  242 (446)
T ss_pred             HHc-CCCCCCCCCCC
Confidence            774 55554444333

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=1e-28  Score=218.94  Aligned_cols=171  Identities=19%  Similarity=0.202  Sum_probs=150.4

Q ss_pred             CchHHHHHHHHc--CCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARS--GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ--TEVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      .|.||||.|+..  ++.++++ +|...|+++|.+|..|.||||+|+..|+  .+++++|+++|++++.++..|+||||+|
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVk-lLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~A  254 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILE-WLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTY  254 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            589999998754  6789998 6668899999999999999999999995  5899999999999999999999999975


Q ss_pred             -------------------------------------HHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHH--CCCHHH
Q 041573           79 -------------------------------------SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ--GSHLEL  119 (238)
Q Consensus        79 -------------------------------------~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~g~~~~  119 (238)
                                                           +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.++
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eI  334 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDI  334 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchH
Confidence                                                 34578899999999999999999999999999864  568999


Q ss_pred             HHHHHhcCCCccccCCCCCCHHHhhcc--------------hhHHHHHHHHHhhcCCCCCCCCCcCCcc
Q 041573          120 VKYLLRKGASLTAKTKAGKTPLDLARN--------------EEIRSFLEEWEQSSKKPNLNGKEKAGES  174 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~~g~tpl~~A~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (238)
                      +++|+++|++++.+|..|+||||+|+.              .+..+++++|++.+.+++.....+..+.
T Consensus       335 VklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPL  403 (764)
T PHA02716        335 IKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL  403 (764)
T ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChH
Confidence            999999999999999999999999854              3678999999999988877666554444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=5.3e-29  Score=203.11  Aligned_cols=154  Identities=30%  Similarity=0.472  Sum_probs=146.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|-+||..|+..||+++|+ +|.+.++++|.......|||..||..|+++++++|+++|+|+++.|+.|.|+||+||..|
T Consensus        83 egappLWaAsaAGHl~vVk-~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVK-LLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKG  161 (615)
T ss_pred             CCCchhhHHhccCcHHHHH-HHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccC
Confidence            4678999999999999999 666778999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHh
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      +.+++++|++.|+|+|.++..|+|+||.|+..|+++++++|+.+|+.+.. |..|.|||..|+..|...+++.|++
T Consensus       162 h~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  162 HVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999999999999999999998855 5569999999999999999999986

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=4e-29  Score=203.82  Aligned_cols=167  Identities=27%  Similarity=0.366  Sum_probs=155.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCC--------CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCch
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRD--------KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS   73 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--------~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t   73 (238)
                      .+|.|||..||.+|+.++|++||...++++....        ..|.+||..|+..|++++|+.|+.+|+++|..+....|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            3788999999999999999988887777655442        47889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHH
Q 041573           74 AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL  153 (238)
Q Consensus        74 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~  153 (238)
                      ||-.||.-|+.+++++|+++|+|++..|..|.|.||+||..|+.+|+++|++.|+|+|.++..|+|+||.|+..|..+++
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCC
Q 041573          154 EEWEQSSKKPNLNGK  168 (238)
Q Consensus       154 ~~l~~~~~~~~~~~~  168 (238)
                      ++|+..+......+.
T Consensus       200 q~Ll~~ga~i~~d~~  214 (615)
T KOG0508|consen  200 QLLLKHGAKIDVDGH  214 (615)
T ss_pred             HHHHhCCceeeecCC
Confidence            999998887755544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2e-27  Score=198.55  Aligned_cols=161  Identities=15%  Similarity=0.137  Sum_probs=144.4

Q ss_pred             CchHHHHHHHH--cCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc------cCCchH
Q 041573            3 NREEELHAAAR--SGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA------MDDMSA   74 (238)
Q Consensus         3 ~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~------~~g~t~   74 (238)
                      +++|+||.|+.  .|+.++++ +|..+|++++..  ++.||||+|+..++.+++++|+.+|++.....      ..+.++
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV~-~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIVD-FMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR  191 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHHH-HHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence            56899999999  89999999 666899999874  45899999999999999999999998543222      347899


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchh------
Q 041573           75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE------  148 (238)
Q Consensus        75 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~------  148 (238)
                      +|.|+..++.+++++|+.+|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+      
T Consensus       192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999776      


Q ss_pred             --HHHHHHHHHhhcCCCCCC
Q 041573          149 --IRSFLEEWEQSSKKPNLN  166 (238)
Q Consensus       149 --~~~~~~~l~~~~~~~~~~  166 (238)
                        +.+++++|+..+...+..
T Consensus       272 ~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCch
Confidence              568999999887766543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-27  Score=208.11  Aligned_cols=160  Identities=25%  Similarity=0.383  Sum_probs=90.9

Q ss_pred             CchHHHHHHHHc-----CCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCcCccccCCchH
Q 041573            3 NREEELHAAARS-----GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG---QTEVVSYLCKNKADVGAAAMDDMSA   74 (238)
Q Consensus         3 ~~~t~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~~~~~~~g~t~   74 (238)
                      .|.||||.|+..     +..++++ +|...|+++|.+|..|.||||+|+..+   +.+++++|+++|++++.+|..|.||
T Consensus        70 ~g~TpL~~~~~n~~~~~~~~~iv~-~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tp  148 (489)
T PHA02798         70 EYSTPLCTILSNIKDYKHMLDIVK-ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM  148 (489)
T ss_pred             CCCChHHHHHHhHHhHHhHHHHHH-HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcH
Confidence            455666655542     4455555 344555666666666666666665543   4556666666666666666666666


Q ss_pred             HHHHHHcCC---HHHHHHHHHCCCCcccc---------------------------------------------------
Q 041573           75 IHFASQKGH---LEVVRTLVSSGVSIKAC---------------------------------------------------  100 (238)
Q Consensus        75 L~~A~~~~~---~~~v~~Ll~~g~~~~~~---------------------------------------------------  100 (238)
                      ||+|+..++   .+++++|+++|++++..                                                   
T Consensus       149 L~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH
Confidence            666665554   55555555555554433                                                   


Q ss_pred             --------------------------ccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573          101 --------------------------TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus       101 --------------------------~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                                                |..|+||||+|+..|+.+++++|++.|++++.+|..|+|||++|+..+...+++
T Consensus       229 ~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~  308 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFN  308 (489)
T ss_pred             HHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHH
Confidence                                      334556666666666666666666666666666666666666666555555555


Q ss_pred             HHHhhcCCC
Q 041573          155 EWEQSSKKP  163 (238)
Q Consensus       155 ~l~~~~~~~  163 (238)
                      .+++.+.+.
T Consensus       309 ~lL~~~~~~  317 (489)
T PHA02798        309 SILNKKPNK  317 (489)
T ss_pred             HHHccCCCH
Confidence            555554443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=207.72  Aligned_cols=157  Identities=20%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHHHhCCCCc-ccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCcCc-cccCCchHH
Q 041573            3 NREEELHAAARS---GDLKAVQSILISNPLSV-NSRDKHSRTPLHLAAWS--GQTEVVSYLCKNKADVGA-AAMDDMSAI   75 (238)
Q Consensus         3 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~~~-~~~~g~t~L   75 (238)
                      .|.||||.|+..   |+.++++ +|...|+++ +.++..|.||||+|+..  ++.+++++|+++|++++. .+..|.|||
T Consensus       107 ~g~tpL~~a~~~~~~~~~eiv~-~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL  185 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCDMLR-FLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPM  185 (494)
T ss_pred             CCCcHHHHHHHhcccCcHHHHH-HHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChH
Confidence            456676666544   4566666 444566666 56666677777766543  466677777777776666 455666777


Q ss_pred             HHHHHcC----CHHHHHHHHHCCCCccc--------------------------------------cccCCCcHHHHHHH
Q 041573           76 HFASQKG----HLEVVRTLVSSGVSIKA--------------------------------------CTRKGLNPLHYAVQ  113 (238)
Q Consensus        76 ~~A~~~~----~~~~v~~Ll~~g~~~~~--------------------------------------~~~~g~t~L~~A~~  113 (238)
                      |+|+..+    +.+++++|+++|++++.                                      +|..|+||||+|+.
T Consensus       186 ~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~  265 (494)
T PHA02989        186 NIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAK  265 (494)
T ss_pred             HHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence            6665543    56666666666655433                                      33446677777777


Q ss_pred             CCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573          114 GSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus       114 ~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+..++++.+++..
T Consensus       266 ~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        266 VDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             hcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            77777777777777777777777777777777666677766666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-27  Score=206.55  Aligned_cols=130  Identities=22%  Similarity=0.345  Sum_probs=113.3

Q ss_pred             CchHHHHHHHHc--CCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCcCccccCCchHH
Q 041573            3 NREEELHAAARS--GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWS-----GQTEVVSYLCKNKADVGAAAMDDMSAI   75 (238)
Q Consensus         3 ~~~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~g~~~~~~~~~g~t~L   75 (238)
                      .+.|+++.+...  ++.++|+ +|...|+++|..+..|.||||+|+..     +..+++++|+++|+++|.+|..|.|||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~-~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpL  113 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVK-LFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL  113 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHH-HHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHH
Confidence            456766645444  4789998 66688999999999999999999864     678999999999999999999999999


Q ss_pred             HHHHHcC---CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC---HHHHHHHHhcCCCcccc
Q 041573           76 HFASQKG---HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH---LELVKYLLRKGASLTAK  133 (238)
Q Consensus        76 ~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~g~~~~~~  133 (238)
                      |+|+..+   +.+++++|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++.+
T Consensus       114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798        114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             HHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence            9999876   7899999999999999999999999999999987   88888888887766443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=3.1e-27  Score=216.15  Aligned_cols=164  Identities=21%  Similarity=0.272  Sum_probs=152.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      +.++||.||..|+.++++.| ...|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~L-l~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEEL-LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            46899999999999999954 57899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      .+++++|+..++..+.  ..|.++||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|+..+++.
T Consensus       604 ~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        604 HKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             HHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence            9999999998876654  45779999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCc
Q 041573          164 NLNGKEK  170 (238)
Q Consensus       164 ~~~~~~~  170 (238)
                      +.....+
T Consensus       682 ~~~~~~g  688 (823)
T PLN03192        682 DKANTDD  688 (823)
T ss_pred             CCCCCCC
Confidence            7665544

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=203.93  Aligned_cols=167  Identities=22%  Similarity=0.282  Sum_probs=131.4

Q ss_pred             CchHHHHHHHHcC---CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARSG---DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      .|.||||.|+..|   +.++++ +|...|+++|.++..|.||||+|+..| ..+++++|+++|++++..+..|.||||+|
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~-~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a  124 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVR-LLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY  124 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            4788888888888   788887 555778888888888888888888888 58888888888888888888888888888


Q ss_pred             H--HcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCC--CHHHHHHHHhcCCCccccCCCCCCHHHhhcc--hhHHHH
Q 041573           79 S--QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS--HLELVKYLLRKGASLTAKTKAGKTPLDLARN--EEIRSF  152 (238)
Q Consensus        79 ~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~--~~~~~~  152 (238)
                      +  ..++.+++++|++.|++++..+..|.||||+|+..+  ..+++++|+++|++++..+..|.||||+|+.  .+...+
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i  204 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI  204 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHH
Confidence            8  455778888888888888888888888888887765  5677888888888777777777788777764  356666


Q ss_pred             HHHHHhhcCCCCCCCCCc
Q 041573          153 LEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       153 ~~~l~~~~~~~~~~~~~~  170 (238)
                      ++.|+..+.+++.....+
T Consensus       205 ~~~Ll~~g~~~~~~d~~g  222 (471)
T PHA03095        205 VRELIRAGCDPAATDMLG  222 (471)
T ss_pred             HHHHHHcCCCCcccCCCC
Confidence            777766666665544433

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=204.55  Aligned_cols=170  Identities=27%  Similarity=0.336  Sum_probs=119.5

Q ss_pred             CchHHHHHHHHcC-CHHHHHHHHHhCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSG-DLKAVQSILISNPLSVNSRDKHSRTPLHLAA--WSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   79 (238)
                      +|.||||+|+..| +.++++ +|...|++++.++..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~-lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~  160 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIK-LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL  160 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHH-HHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            5778888888888 477776 555677888888888888888887  445677777777777777777777777777665


Q ss_pred             HcC--CHH-----------------------------------HHHHHHHCCCCccccccCCCcHHHHHHHCCCH--HHH
Q 041573           80 QKG--HLE-----------------------------------VVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL--ELV  120 (238)
Q Consensus        80 ~~~--~~~-----------------------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--~~~  120 (238)
                      ..+  ..+                                   +++.|+..|++++.+|..|+||||+|+..|+.  .++
T Consensus       161 ~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v  240 (471)
T PHA03095        161 KSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV  240 (471)
T ss_pred             HcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHH
Confidence            543  234                                   44444455555555666666666666666643  466


Q ss_pred             HHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCc
Q 041573          121 KYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       121 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  173 (238)
                      +.|+..|++++.+|..|+||||+|+..+..++++.|++.+++++.....+..+
T Consensus       241 ~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        241 LPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            67777788888888888888888888888888888888887776665554433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=212.17  Aligned_cols=170  Identities=28%  Similarity=0.346  Sum_probs=114.9

Q ss_pred             CchHHHHHHHHcC-CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcCccccCCchHHHHHHH
Q 041573            3 NREEELHAAARSG-DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWS-GQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ   80 (238)
Q Consensus         3 ~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   80 (238)
                      +|.||||.|+..| +.+.++ +|...|++++..+..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+.
T Consensus       306 ~g~TpLh~Aa~~g~~~~~v~-~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        306 KGETPLYLMAKNGYDTENIR-TLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCCHHHHHHHhCCCHHHHH-HHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            3455555555555 244443 33444555555555555555555553 34566666666677777777777777777777


Q ss_pred             cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC-HHHHHHHHhcCCCccccCCCCCCHHHhhcchh-HHHHHHHHHh
Q 041573           81 KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH-LELVKYLLRKGASLTAKTKAGKTPLDLARNEE-IRSFLEEWEQ  158 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~-~~~~~~~l~~  158 (238)
                      .|+.+++++|+++|++++..+..|.||||+|+..+. ..++++|+++|++++.+|..|+||||+|+..+ ..+++++|++
T Consensus       385 ~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        385 RNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             cCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            777777777777777777777777777777766554 45677888888888888889999999998765 5788899988


Q ss_pred             hcCCCCCCCCCcCCc
Q 041573          159 SSKKPNLNGKEKAGE  173 (238)
Q Consensus       159 ~~~~~~~~~~~~~~~  173 (238)
                      .+.+++.....+..+
T Consensus       465 ~Gad~n~~d~~g~tp  479 (682)
T PHA02876        465 NGADVNAINIQNQYP  479 (682)
T ss_pred             CCCCCCCCCCCCCCH
Confidence            888877666555444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2.3e-27  Score=210.40  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=140.0

Q ss_pred             CchHHHHHHHHcCC--HHHHHHHHHhCCCCcccCCCCCCcHHHHH-----------------------------------
Q 041573            3 NREEELHAAARSGD--LKAVQSILISNPLSVNSRDKHSRTPLHLA-----------------------------------   45 (238)
Q Consensus         3 ~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-----------------------------------   45 (238)
                      .|+||||.|+..|+  .++|+ +|+..|+++|.++..|.||||+|                                   
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVk-lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIK-KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            68999999999996  48888 66688999999999999999975                                   


Q ss_pred             --HHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHH--cCCHHHHHHHHHCCCCccccccCCCcHHHHHHH--------
Q 041573           46 --AWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ--KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ--------  113 (238)
Q Consensus        46 --~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--------  113 (238)
                        +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.        
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence              34578899999999999999999999999999864  467899999999999999999999999999875        


Q ss_pred             ------CCCHHHHHHHHhcCCCccccCCCCCCHHHh----hcchhHHHHHHHHHhhcC
Q 041573          114 ------GSHLELVKYLLRKGASLTAKTKAGKTPLDL----ARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       114 ------~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~----A~~~~~~~~~~~l~~~~~  161 (238)
                            .++.+++++|+++|++++.+|..|+||||.    |...+..+++++|+..+.
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence                  368999999999999999999999999994    234567899999887654

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=8.3e-27  Score=199.63  Aligned_cols=167  Identities=21%  Similarity=0.228  Sum_probs=146.2

Q ss_pred             chHHHHHHHHc--CCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            4 REEELHAAARS--GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         4 ~~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      +.++||.++..  ++.++++ +|...|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~-~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVE-ELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHH-HHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            36889987743  3678888 55578999999999999999999999999999999999999999999999999999887


Q ss_pred             CC--HHHHHHHHHCCCCccc-cccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcch--hHHHHHHHH
Q 041573           82 GH--LEVVRTLVSSGVSIKA-CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE--EIRSFLEEW  156 (238)
Q Consensus        82 ~~--~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~--~~~~~~~~l  156 (238)
                      +.  .+++++|+++|++++. .+..|.|||| |+..|+.+++++|++.|++++.+|..|+||||+|+..  +..+++++|
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L  194 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWM  194 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHH
Confidence            64  7899999999999995 6889999997 6677999999999999999999999999999998754  446889999


Q ss_pred             HhhcCCCCCCCCCcCC
Q 041573          157 EQSSKKPNLNGKEKAG  172 (238)
Q Consensus       157 ~~~~~~~~~~~~~~~~  172 (238)
                      +..+.+++.....+..
T Consensus       195 l~~Gadin~~d~~G~T  210 (446)
T PHA02946        195 MKLGISPSKPDHDGNT  210 (446)
T ss_pred             HHcCCCCcccCCCCCC
Confidence            9999888766655443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.1e-27  Score=202.70  Aligned_cols=171  Identities=18%  Similarity=0.277  Sum_probs=138.7

Q ss_pred             CchHHHHHHHHcC------CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCc-CccccCCc
Q 041573            3 NREEELHAAARSG------DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWS---GQTEVVSYLCKNKADV-GAAAMDDM   72 (238)
Q Consensus         3 ~~~t~L~~A~~~g------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-~~~~~~g~   72 (238)
                      .+.||||.|+..+      +.++++ +|...|+++|.++..|.||||+|+..   ++.+++++|+++|+++ +..+..|+
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~-~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVK-LLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence            4678999887654      356776 66688899999999999999987765   5789999999999999 78888999


Q ss_pred             hHHHHHHHc--CCHHHHHHHHHCCCCccc-cccCCCcHHHHHHHCC----CHHHHHHHHhcCCCccc-------------
Q 041573           73 SAIHFASQK--GHLEVVRTLVSSGVSIKA-CTRKGLNPLHYAVQGS----HLELVKYLLRKGASLTA-------------  132 (238)
Q Consensus        73 t~L~~A~~~--~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g----~~~~~~~Ll~~g~~~~~-------------  132 (238)
                      ||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++.             
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFL  226 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHH
Confidence            999988754  578999999999999988 5778999999887654    78889998888876543             


Q ss_pred             -------------------------cCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCcc
Q 041573          133 -------------------------KTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGES  174 (238)
Q Consensus       133 -------------------------~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (238)
                                               +|..|+||||+|+..++.+++++|++.+++++.....+..+.
T Consensus       227 ~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL  293 (494)
T PHA02989        227 DNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVL  293 (494)
T ss_pred             HhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHH
Confidence                                     445689999999999999999999999988877766554443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3e-27  Score=203.59  Aligned_cols=168  Identities=29%  Similarity=0.403  Sum_probs=150.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCC--------------CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPL--------------SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA   68 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--------------~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~   68 (238)
                      ++.+|||.|+..|++++++.+|.....              -+|..|.+|.||||+||+.|+.+++..|+..|++++.++
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn  303 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN  303 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence            688999999999999999977743221              255678899999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHH-CC-CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCcc---ccCCCCCCHHHh
Q 041573           69 MDDMSAIHFASQKGHLEVVRTLVS-SG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT---AKTKAGKTPLDL  143 (238)
Q Consensus        69 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~---~~~~~g~tpl~~  143 (238)
                      .++.||||.|+.+|++..|+.||+ .| ...+..|..|.||||+|+..||..++++|++.|+...   ..|.+|.||||.
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH
Confidence            999999999999999999999999 43 4567788899999999999999999999999999987   459999999999


Q ss_pred             hcchhHHHHHHHHHhhcCCCCCCCCCc
Q 041573          144 ARNEEIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       144 A~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      |+.+|+..+++.|+.++++....++.+
T Consensus       384 Aa~~g~~~av~~Li~~Ga~I~~~n~~g  410 (929)
T KOG0510|consen  384 AAKYGNTSAVQKLISHGADIGVKNKKG  410 (929)
T ss_pred             HHHhccHHHHHHHHHcCCceeeccccc
Confidence            999999999999999999885544443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3e-26  Score=206.63  Aligned_cols=171  Identities=25%  Similarity=0.289  Sum_probs=153.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|+||||+|+..|+...+..+|...|++++.+|..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            58999999999999865555788899999999999999999999999 69999999999999999999999999999985


Q ss_pred             -CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcch-hHHHHHHHHHhh
Q 041573           82 -GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE-EIRSFLEEWEQS  159 (238)
Q Consensus        82 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~l~~~  159 (238)
                       +..+++.+|+..|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. +...+++.|+..
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~  431 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDR  431 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC
Confidence             578899999999999999999999999999999999999999999999999999999999999754 456678899999


Q ss_pred             cCCCCCCCCCcCCc
Q 041573          160 SKKPNLNGKEKAGE  173 (238)
Q Consensus       160 ~~~~~~~~~~~~~~  173 (238)
                      +.+.+.....+..+
T Consensus       432 gadin~~d~~G~Tp  445 (682)
T PHA02876        432 GANVNSKNKDLSTP  445 (682)
T ss_pred             CCCCCcCCCCCChH
Confidence            98887766655443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.8e-27  Score=176.97  Aligned_cols=153  Identities=29%  Similarity=0.358  Sum_probs=140.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      +++|+..++...+++.+..+   ....+|..|.+|.|||+||+.+|++++|++|++.|++++.......++|++|+..|+
T Consensus       129 p~s~~slsVhql~L~~~~~~---~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggy  205 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLL---VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGY  205 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHH---hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCCh
Confidence            67889999998888877532   245689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      .++|++|+..+.++|..|.+|-|||-+|++.|+.+|++.|+..|++++..+..|++++++|+..|++ +++..++..
T Consensus       206 tdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  206 TDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             HHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998888 555544443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=2e-26  Score=204.66  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=135.2

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC------------------------------
Q 041573            3 NREEELHAAARS---GDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG------------------------------   49 (238)
Q Consensus         3 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g------------------------------   49 (238)
                      +|+||||+|+..   |+.++++ +|+..|++++..+..|.||||+|+..|                              
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~-~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~  109 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVK-LLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYM  109 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHH-HHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHH
Confidence            689999997555   8899999 555789999999999999999887643                              


Q ss_pred             -----CHHHHHHHHHCCCCcCccccCCchHHHHHH--HcCCHHHHHHHHHCCCCcccccc---CC-----------CcHH
Q 041573           50 -----QTEVVSYLCKNKADVGAAAMDDMSAIHFAS--QKGHLEVVRTLVSSGVSIKACTR---KG-----------LNPL  108 (238)
Q Consensus        50 -----~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~---~g-----------~t~L  108 (238)
                           +.+++++|+++|++++.+|..|+||||+++  ..|+.+++++|+++|++++..|.   .|           .|||
T Consensus       110 a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L  189 (661)
T PHA02917        110 KSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVL  189 (661)
T ss_pred             HhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHH
Confidence                 457888899999999999999999999543  57899999999999999986653   34           5999


Q ss_pred             HHHHH-----------CCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHH--HHHHHHHhhcCC
Q 041573          109 HYAVQ-----------GSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR--SFLEEWEQSSKK  162 (238)
Q Consensus       109 ~~A~~-----------~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~--~~~~~l~~~~~~  162 (238)
                      |+|+.           +++.+++++|+++|++++.+|..|.||||+|+..+..  ++++.|+. +.+
T Consensus       190 ~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d  255 (661)
T PHA02917        190 HLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID  255 (661)
T ss_pred             HHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence            99986           5689999999999999999999999999999988764  79998875 543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=4.4e-27  Score=186.40  Aligned_cols=158  Identities=26%  Similarity=0.351  Sum_probs=143.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCcCccc-cCCchHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWS-----GQTEVVSYLCKNKADVGAAA-MDDMSAI   75 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~g~~~~~~~-~~g~t~L   75 (238)
                      +||+|+||||+..+||++|+.||...-++++.++.-|.||+++|+..     .+.++|..|+..| ++|.+- ..|.|+|
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTAL  344 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhh
Confidence            59999999999999999999899888899999999999999999875     4678999999887 566655 4599999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc-CCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573           76 HFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus        76 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                      ++|+..|..++|+.||.+|+|+|.+|.+|.|+|++|+.+||.+++++||.. ++|+...|.+|-|+|.+|-..|+.+|--
T Consensus       345 MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~  424 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAV  424 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHH
Confidence            999999999999999999999999999999999999999999999999976 8999999999999999999888888866


Q ss_pred             HHHhhc
Q 041573          155 EWEQSS  160 (238)
Q Consensus       155 ~l~~~~  160 (238)
                      +|-.+.
T Consensus       425 mlYa~~  430 (452)
T KOG0514|consen  425 MLYAHM  430 (452)
T ss_pred             HHHHHH
Confidence            654443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=9.9e-26  Score=168.65  Aligned_cols=133  Identities=19%  Similarity=0.297  Sum_probs=62.8

Q ss_pred             hHHHHHHHHcCCHHHHHH---HHHhCCCCcccCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCcCccc-cCCchHHHH
Q 041573            5 EEELHAAARSGDLKAVQS---ILISNPLSVNSRDKHSRTPLHLAAWSGQTEV---VSYLCKNKADVGAAA-MDDMSAIHF   77 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---~~~Ll~~g~~~~~~~-~~g~t~L~~   77 (238)
                      .++||.||..|+...+..   +|...+..++..|..|+||||+|+..|+.++   +++|+..|++++.++ ..|.||||+
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~  100 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHI  100 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHH
Confidence            344455555555432221   2223444444444455555555555444322   445555555555444 245555555


Q ss_pred             HHHcCCHHHHHHHHH-CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCC
Q 041573           78 ASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG  137 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  137 (238)
                      |+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+.+|++++.++..|
T Consensus       101 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743        101 AASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             HHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            555555555555542 455555555555555555555555555555555555554444433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=168.34  Aligned_cols=142  Identities=19%  Similarity=0.203  Sum_probs=127.8

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH---HHHHHHHCCCCccc
Q 041573           27 NPLSVNSRDKHSRTPLHLAAWSGQT----EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE---VVRTLVSSGVSIKA   99 (238)
Q Consensus        27 ~~~~~~~~~~~g~t~L~~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~g~~~~~   99 (238)
                      ++++++..+..+.++||.||+.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.+   ++++|+..|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4567777788899999999999998    6677888899999999999999999999998765   48999999999999


Q ss_pred             cc-cCCCcHHHHHHHCCCHHHHHHHHh-cCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCC
Q 041573          100 CT-RKGLNPLHYAVQGSHLELVKYLLR-KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK  168 (238)
Q Consensus       100 ~~-~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~  168 (238)
                      ++ ..|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..+..+++++|+.++...+.+..
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            98 589999999999999999999995 8999999999999999999999999999999999877755443

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=168.17  Aligned_cols=132  Identities=21%  Similarity=0.323  Sum_probs=120.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHH------CCCCcCccccCCchHHHHHHHcCC----HHHHHHHHHCCCCcccc
Q 041573           31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCK------NKADVGAAAMDDMSAIHFASQKGH----LEVVRTLVSSGVSIKAC  100 (238)
Q Consensus        31 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~  100 (238)
                      ++.++..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+..|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34567889999999999999999999854      368899999999999999999998    58999999999999999


Q ss_pred             cc-CCCcHHHHHHHCCCHHHHHHHHh-cCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573          101 TR-KGLNPLHYAVQGSHLELVKYLLR-KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       101 ~~-~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +. .|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|...+..+++++|.+....
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            85 89999999999999999999997 5999999999999999999999999999999887655

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.8e-25  Score=190.14  Aligned_cols=155  Identities=26%  Similarity=0.369  Sum_probs=93.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH-----CCCCcCccccCCchHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK-----NKADVGAAAMDDMSAIHF   77 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~   77 (238)
                      +|.||||.||..++.+ .+.+|+..++++-..|.+|.+|+|.|++.|..++.+.++.     ++..+|..+..|.||||.
T Consensus       153 ~~~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhl  231 (929)
T KOG0510|consen  153 NGFTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHL  231 (929)
T ss_pred             CCCchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhh
Confidence            4455555555555555 3234445555555555555555555555555555555554     344455555555556666


Q ss_pred             HHHcCCHHHHHHHHHCCCC---------------ccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHH
Q 041573           78 ASQKGHLEVVRTLVSSGVS---------------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD  142 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~  142 (238)
                      |+..|+.++++.+|+.|..               ++..|.+|.||||+|++.|+.+++..|+..|++++.++.++.||||
T Consensus       232 Ave~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH  311 (929)
T KOG0510|consen  232 AVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLH  311 (929)
T ss_pred             hhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchH
Confidence            6666666666666655432               3345666777777777777777777777777777777777777777


Q ss_pred             hhcchhHHHHHHHHHh
Q 041573          143 LARNEEIRSFLEEWEQ  158 (238)
Q Consensus       143 ~A~~~~~~~~~~~l~~  158 (238)
                      .|+.+|....++.|++
T Consensus       312 ~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  312 FAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHHHcccHHHHHHHHh
Confidence            7777777777777666

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=8.4e-25  Score=164.25  Aligned_cols=128  Identities=21%  Similarity=0.373  Sum_probs=117.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHH-----hCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCcCcccc-CCc
Q 041573            3 NREEELHAAARSGDLKAVQSILI-----SNPLSVNSRDKHSRTPLHLAAWSGQ----TEVVSYLCKNKADVGAAAM-DDM   72 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~g~~~~~~~~-~g~   72 (238)
                      .|.|+||+|+..|+.++++.|+.     ..+.+++.+|..|.||||+|+..|+    .+++++|+..|++++.++. .|+
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~   99 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD   99 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence            58999999999999999997653     2367899999999999999999998    5899999999999999985 899


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCc
Q 041573           73 SAIHFASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL  130 (238)
Q Consensus        73 t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~  130 (238)
                      ||||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|+++++..
T Consensus       100 TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        100 TALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999997 59999999999999999999999999999999987653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.93  E-value=1.2e-24  Score=156.34  Aligned_cols=147  Identities=29%  Similarity=0.397  Sum_probs=133.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHH
Q 041573            7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEV   86 (238)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   86 (238)
                      -+..|+..|.+..|+.||......+|.+|.+|.||||.|+..|+.++++.|+..|++++.++..|+||||-||.-.+.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCccccccCCCcHHHHHHHCCCH-HHHHHHH-hcCCCccccCCCCCCHHHhhcchhHHHHH
Q 041573           87 VRTLVSSGVSIKACTRKGLNPLHYAVQGSHL-ELVKYLL-RKGASLTAKTKAGKTPLDLARNEEIRSFL  153 (238)
Q Consensus        87 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~-~~~~~Ll-~~g~~~~~~~~~g~tpl~~A~~~~~~~~~  153 (238)
                      +-+||++|+|+|+......||||+|+...+. ..+++|+ ..++++-.++..+.||+.+|.+.+....+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~l  214 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYL  214 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHH
Confidence            9999999999999999999999999977654 4455555 45889999999999999999877655443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=2.2e-25  Score=201.82  Aligned_cols=160  Identities=30%  Similarity=0.416  Sum_probs=128.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.|+||.|+..|+.+.+. ++...+...+.....+-+++|.|...+...+++.++++|++++.++..|.||||.|+.+|
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~-llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQ-LLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             ccCcchhhhhccCCchHHH-HhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcC
Confidence            3455555555555555554 333333444444445555555555555555566666678888888999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ++.+|++|+++|++++.+++.|+||||.||..|+.+|+++|+++|+++|..|.+|.|||++|+..+...+++.+...+..
T Consensus       552 ~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  552 NVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             C
Q 041573          163 P  163 (238)
Q Consensus       163 ~  163 (238)
                      +
T Consensus       632 ~  632 (1143)
T KOG4177|consen  632 P  632 (1143)
T ss_pred             c
Confidence            4

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.4e-24  Score=197.27  Aligned_cols=144  Identities=19%  Similarity=0.300  Sum_probs=133.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.|+..|+.++++ +|...|+++|.+|.+|+||||+|+..|+.+++++|+..++..+.  ..+.++||+|+..|
T Consensus       557 ~G~TpLh~Aa~~g~~~~v~-~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g  633 (823)
T PLN03192        557 KGRTPLHIAASKGYEDCVL-VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRN  633 (823)
T ss_pred             CCCCHHHHHHHcChHHHHH-HHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhC
Confidence            6899999999999999998 56678999999999999999999999999999999998876653  35679999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCC-CCHHHhhcchhH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG-KTPLDLARNEEI  149 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-~tpl~~A~~~~~  149 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..| .||++++.....
T Consensus       634 ~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        634 DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888 999998865433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.8e-25  Score=169.55  Aligned_cols=156  Identities=31%  Similarity=0.432  Sum_probs=137.6

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHH
Q 041573            9 HAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVR   88 (238)
Q Consensus         9 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   88 (238)
                      +.=|..|+.-.|+..|....-++|.-|..|.+|||+||+.|+..+++.|+.+|+.+|..+....||||+|+..|+.++|+
T Consensus         5 f~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHH
Confidence            34456666666665666777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCC
Q 041573           89 TLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN  164 (238)
Q Consensus        89 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  164 (238)
                      .|++..+|+|+.+.+|+|||||||..|...+++-|+..|+.+++.|..|.|||+.|.-.-...+.+.....+..++
T Consensus        85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999975544445555555555554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=7.8e-24  Score=177.08  Aligned_cols=162  Identities=12%  Similarity=0.002  Sum_probs=144.5

Q ss_pred             HHHHcCCHHHHHHHHHhCCCCcc------cCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573           10 AAARSGDLKAVQSILISNPLSVN------SRDKHSRTPLHLAAW--SGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus        10 ~A~~~g~~~~v~~ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|+..+..++++ +|...+++++      .++..++|+||+++.  .|+.+++++|+.+||+++..  .+.||||.|+..
T Consensus        83 ~~~~~~~k~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIIS-ALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHH-HHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            788899999998 7778899988      778889999999999  89999999999999999974  458999999999


Q ss_pred             CCHHHHHHHHHCCCCcccc------ccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHH
Q 041573           82 GHLEVVRTLVSSGVSIKAC------TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE  155 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~  155 (238)
                      ++.+++++|+.+|++....      +..+.|++|.|+..++.+++++|+.+|++++.+|..|.||||+|+..+..+++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVel  239 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSW  239 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999854322      1347899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCcCCcc
Q 041573          156 WEQSSKKPNLNGKEKAGES  174 (238)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~  174 (238)
                      |++.+++.+.....+....
T Consensus       240 LL~~GAdIN~~d~~G~TpL  258 (437)
T PHA02795        240 LLENGANVNAVMSNGYTCL  258 (437)
T ss_pred             HHHCCCCCCCcCCCCCCHH
Confidence            9999999887776554443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.1e-23  Score=167.99  Aligned_cols=149  Identities=14%  Similarity=0.101  Sum_probs=111.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccCCchHHHHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRD----KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA-AMDDMSAIHFA   78 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A   78 (238)
                      ..++||.|+..|+.++++ +|...|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|
T Consensus        33 ~~~lL~~A~~~~~~eivk-~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~A  111 (300)
T PHA02884         33 IANILYSSIKFHYTDIID-AILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYIS  111 (300)
T ss_pred             CCHHHHHHHHcCCHHHHH-HHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHH
Confidence            346677777778888887 5557788888763    47888888888888888888888888888875 45688888888


Q ss_pred             HHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHh
Q 041573           79 SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus        79 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      +..++.+++++|+.+|++++.+|..|.||||+|+..++..++.++.  |..   .+..+.+|++++.   ..++++.|..
T Consensus       112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---n~ei~~~Lis  183 (300)
T PHA02884        112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI---NFDILKILVS  183 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc---cHHHHHHHHH
Confidence            8888888888888888888888888888888888877777776664  322   3555667777653   3556666655


Q ss_pred             hcC
Q 041573          159 SSK  161 (238)
Q Consensus       159 ~~~  161 (238)
                      +..
T Consensus       184 h~v  186 (300)
T PHA02884        184 HFI  186 (300)
T ss_pred             HHH
Confidence            554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=3.2e-24  Score=158.81  Aligned_cols=96  Identities=19%  Similarity=0.271  Sum_probs=46.8

Q ss_pred             CCCCCcHHHHHHHcCCH---HHHHHHHHCCCCcCccc-cCCchHHHHHHHcCCHHHHHHHHH-CCCCccccccCCCcHHH
Q 041573           35 DKHSRTPLHLAAWSGQT---EVVSYLCKNKADVGAAA-MDDMSAIHFASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLH  109 (238)
Q Consensus        35 ~~~g~t~L~~A~~~g~~---~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~  109 (238)
                      |..|.||||+|+..|+.   +++++|+..|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            44455555555544443   23444455555555444 245555555555555555555544 24455555555555555


Q ss_pred             HHHHCCCHHHHHHHHhcCCCc
Q 041573          110 YAVQGSHLELVKYLLRKGASL  130 (238)
Q Consensus       110 ~A~~~g~~~~~~~Ll~~g~~~  130 (238)
                      +|+..|+.+++++|+.+|++.
T Consensus       132 ~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        132 VACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHcCCHHHHHHHHHcCCCC
Confidence            555555555555555554443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=5.8e-24  Score=192.72  Aligned_cols=175  Identities=30%  Similarity=0.409  Sum_probs=155.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.|++|.|+..|.+..+-.++...+.++|.....|.||||.|+..|+.+++..|++.++..+.....+.+++|.+...+
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence            46888888888884333333667788888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ....++.++.+|++++.++..|+||||+|+.+|+..+|++|+++|++++.+++.|+||||.|+..+..+++++|.+++..
T Consensus       519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCccccc
Q 041573          163 PNLNGKEKAGESETK  177 (238)
Q Consensus       163 ~~~~~~~~~~~~~~~  177 (238)
                      ++....++.+.....
T Consensus       599 vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIA  613 (1143)
T ss_pred             CCcccccCcchhHHH
Confidence            998888877665444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=3.3e-24  Score=158.75  Aligned_cols=132  Identities=21%  Similarity=0.230  Sum_probs=112.8

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-------CcCccccCCchHHHHHHHcCCH---HHHHHHHHCCCCcccc
Q 041573           31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-------DVGAAAMDDMSAIHFASQKGHL---EVVRTLVSSGVSIKAC  100 (238)
Q Consensus        31 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-------~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~  100 (238)
                      .+.+|..|.||||+||+.|+.  +.+++..+.       .++.+|..|.||||+|+..|+.   +++++|+..|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            455678899999999999984  333332222       2345688999999999999987   4689999999999999


Q ss_pred             c-cCCCcHHHHHHHCCCHHHHHHHHh-cCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCC
Q 041573          101 T-RKGLNPLHYAVQGSHLELVKYLLR-KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN  164 (238)
Q Consensus       101 ~-~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  164 (238)
                      + ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..+..+++++|+..+...+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8 489999999999999999999998 599999999999999999999999999999998886653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=178.30  Aligned_cols=146  Identities=35%  Similarity=0.514  Sum_probs=131.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcc---------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA---------------   67 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---------------   67 (238)
                      +|.|+||.||...+.++|+ ++..+++++|..|..||||||.|+..|+..++++|+.+|+++-.+               
T Consensus        72 DglTalhq~~id~~~e~v~-~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVK-FLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEA  150 (527)
T ss_pred             ccchhHHHHHhcccHHHHH-HHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcc
Confidence            6899999999999999999 666889999999999999999999999999999999887765333               


Q ss_pred             --------------------------------------------ccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccC
Q 041573           68 --------------------------------------------AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK  103 (238)
Q Consensus        68 --------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  103 (238)
                                                                  +..|.|.||.|+..|+.++.++|+++|.+++.+|.+
T Consensus       151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d  230 (527)
T KOG0505|consen  151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD  230 (527)
T ss_pred             hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc
Confidence                                                        224669999999999999999999999999999999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhH
Q 041573          104 GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEI  149 (238)
Q Consensus       104 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  149 (238)
                      ||||||.|+.+|..+++++|+++|++++..+..|.||+++|.....
T Consensus       231 gWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  231 GWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL  276 (527)
T ss_pred             CCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence            9999999999999999999999999999999999999999976544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.7e-23  Score=179.12  Aligned_cols=155  Identities=15%  Similarity=0.194  Sum_probs=134.9

Q ss_pred             HHHHHHHcC---CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CcCccccCCchHHHH
Q 041573            7 ELHAAARSG---DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ----TEVVSYLCKNKA--DVGAAAMDDMSAIHF   77 (238)
Q Consensus         7 ~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~g~--~~~~~~~~g~t~L~~   77 (238)
                      .||.-...+   +.++++ +|..+|+++|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIve-lLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILR-CMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHH-HHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhH
Confidence            567777766   588998 777899999986 799999999998875    899999999997  689999999999984


Q ss_pred             ---HHHcC---------CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCC-CCCCHHHhh
Q 041573           78 ---ASQKG---------HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK-AGKTPLDLA  144 (238)
Q Consensus        78 ---A~~~~---------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~tpl~~A  144 (238)
                         |...+         ..+++++|+.+|++++.+|..|+||||+|+..++.+++++|+.+|++++.++. .|.||||+|
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence               33232         23579999999999999999999999999999999999999999999999997 599999999


Q ss_pred             cc--hhHHHHHHHHHhhcCCC
Q 041573          145 RN--EEIRSFLEEWEQSSKKP  163 (238)
Q Consensus       145 ~~--~~~~~~~~~l~~~~~~~  163 (238)
                      +.  .+..++++.|++.++..
T Consensus       504 a~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        504 SYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             HHhhcCcHHHHHHHHHcCCCH
Confidence            86  36789999999888655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.1e-23  Score=165.36  Aligned_cols=126  Identities=18%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             cccCCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCcCccc----cCCchHHHHHHHcCCHHHHHHHHHCCCCccccc-cCC
Q 041573           31 VNSRDKHSRT-PLHLAAWSGQTEVVSYLCKNKADVGAAA----MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-RKG  104 (238)
Q Consensus        31 ~~~~~~~g~t-~L~~A~~~g~~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g  104 (238)
                      +..+|..|+| +||.|+..|+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+.+|++++.++ ..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4456677766 5677777899999999999999999874    589999999999999999999999999999874 579


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573          105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus       105 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      .||||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..+...+...+
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence            9999999999999999999999999999999999999999877666665444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=1e-22  Score=181.11  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=130.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCcCcccc---CC---------
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAA--WSGQTEVVSYLCKNKADVGAAAM---DD---------   71 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~~~~~~---~g---------   71 (238)
                      ++++.|+..|+.++|+ +|...|+++|..|..|+||||+|+  ..|+.+++++|+++|++++..+.   .|         
T Consensus       105 ~~~~~a~~~~~~e~vk-~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        105 IFSYMKSKNVDVDLIK-VLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             hHHHHHhhcCCHHHHH-HHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            4556677777888888 556889999999999999999654  57899999999999999986653   23         


Q ss_pred             --chHHHHHHH-----------cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCH--HHHHHHHhcCCCcc----c
Q 041573           72 --MSAIHFASQ-----------KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL--ELVKYLLRKGASLT----A  132 (238)
Q Consensus        72 --~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--~~~~~Ll~~g~~~~----~  132 (238)
                        .||||+|+.           .++.+++++|+.+|++++.+|..|+||||+|+..|+.  ++|++|+. |++++    .
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~  262 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYI  262 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccc
Confidence              599999986           4689999999999999999999999999999999985  79999975 88875    5


Q ss_pred             cCCCCCCHHHhhcchh---------HHHHHHHHHhhcCC
Q 041573          133 KTKAGKTPLDLARNEE---------IRSFLEEWEQSSKK  162 (238)
Q Consensus       133 ~~~~g~tpl~~A~~~~---------~~~~~~~l~~~~~~  162 (238)
                      .|..|.+|+++|+..+         ..+++++|+..++.
T Consensus       263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            6778889999987321         67899999999975

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=2.6e-23  Score=154.81  Aligned_cols=167  Identities=23%  Similarity=0.257  Sum_probs=147.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+++++.|+-.|+...+. .++.++...|..+.-+++|+.+++...+.+.+..+...  .+|..|..|+|||++|+..|
T Consensus        95 ~g~~~~~v~ap~~s~~k~s-ttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVS-TTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             hhhhhhhhcCCCCCcceee-eeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcC
Confidence            4788888888888777776 55577778888888899999999988877776665544  56788999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ++.+|++|++.|++++..-+.-.|+|++|+..|..++|++|+.++.|+|+.|++|-|||-||++-++.+|++.|+..++.
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd  251 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD  251 (296)
T ss_pred             chHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcCC
Q 041573          163 PNLNGKEKAG  172 (238)
Q Consensus       163 ~~~~~~~~~~  172 (238)
                      +......++-
T Consensus       252 ~t~e~dsGy~  261 (296)
T KOG0502|consen  252 VTQEDDSGYW  261 (296)
T ss_pred             cccccccCCc
Confidence            8766655543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.5e-22  Score=167.94  Aligned_cols=169  Identities=26%  Similarity=0.315  Sum_probs=150.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHH
Q 041573            7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEV   86 (238)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   86 (238)
                      .+..|+..|+++-+..|| ..+.+++..+.+|.|+||-+|...+.+||++|+++|++||..|..|+||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll-~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLL-NRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHh-ccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            356788889999999666 5678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCC-----------------------------------------------------------ccccccCCCcH
Q 041573           87 VRTLVSSGVS-----------------------------------------------------------IKACTRKGLNP  107 (238)
Q Consensus        87 v~~Ll~~g~~-----------------------------------------------------------~~~~~~~g~t~  107 (238)
                      +.+|+.+|++                                                           .+..+..|.|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            9999987655                                                           33444457799


Q ss_pred             HHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCcccc
Q 041573          108 LHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESET  176 (238)
Q Consensus       108 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  176 (238)
                      ||+|+..|..++.++|+++|.+++++|.+|+||||.|+.-+...+.++|.+++...+.....+......
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv  270 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDV  270 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999887777666555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=7.8e-22  Score=172.48  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             CchHHHHHHHHcC---CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCc--CccccCCchHH
Q 041573            3 NREEELHAAARSG---DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG--QTEVVSYLCKNKADV--GAAAMDDMSAI   75 (238)
Q Consensus         3 ~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~--~~~~~~g~t~L   75 (238)
                      .|+||||+|+..|   +.++|+ +|+.+|++++.+|..|+||||+|+..+  +.+++++|+..|+++  +..+.-+.+||
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivk-lLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l  118 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVR-LLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL  118 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHH-HHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence            6899999999997   589998 566899999999999999999999976  799999999996544  55555566777


Q ss_pred             HHHHH--cCCHHHHHHHHH-CCCCcccccc-----CCCcHHHHHHHCCCHHHHHHHHhcCCCc
Q 041573           76 HFASQ--KGHLEVVRTLVS-SGVSIKACTR-----KGLNPLHYAVQGSHLELVKYLLRKGASL  130 (238)
Q Consensus        76 ~~A~~--~~~~~~v~~Ll~-~g~~~~~~~~-----~g~t~L~~A~~~g~~~~~~~Ll~~g~~~  130 (238)
                      |.++.  .++.+++++|+. .+++++....     .|.+|++++...++.++|++|++.|+++
T Consensus       119 ~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        119 YSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             HHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            76666  666666666664 4455544322     4555666666666666655555555555

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=4.2e-22  Score=143.21  Aligned_cols=120  Identities=34%  Similarity=0.427  Sum_probs=109.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHH
Q 041573           41 PLHLAAWSGQTEVVSYLCKNKAD-VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL  119 (238)
Q Consensus        41 ~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  119 (238)
                      .+.+|+..+....|+.||+..++ +|.+|.+|.||||-|+..|+.+||+.|+..|++++.+...||||||.||.+.+.+|
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            46789999999999999998666 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCCHHHhhcch-hHHHHHHHHHhhc
Q 041573          120 VKYLLRKGASLTAKTKAGKTPLDLARNE-EIRSFLEEWEQSS  160 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~l~~~~  160 (238)
                      +-+|+++|+|+++......||||+|+.. +.+..+.+|+...
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dr  187 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDR  187 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhcc
Confidence            9999999999999999999999999854 4555566665443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=5.3e-22  Score=170.34  Aligned_cols=170  Identities=24%  Similarity=0.298  Sum_probs=151.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|.|.||.|+.+|+..+++ ||..+...++..+..|.+|||+|++.|+.+++++|+..+..+|..+..|.||||.|+..|
T Consensus        48 ~gfTalhha~Lng~~~is~-llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISK-LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHG  126 (854)
T ss_pred             cchhHHHHHHhcCchHHHH-HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhc
Confidence            6899999999999999998 666778888888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCc--------cccCCCCCCHHHhhcchhHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL--------TAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~--------~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                      +.+++.+|+.+|+++-.++..+.|+|.+|++.|..++++.|++...++        ..++..+-+|||+|++++..++++
T Consensus       127 h~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  127 HLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             chHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence            999999999999999999999999999999999999999998763222        345566889999999999999999


Q ss_pred             HHHhhcCCCCCCCCCcCCc
Q 041573          155 EWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       155 ~l~~~~~~~~~~~~~~~~~  173 (238)
                      .|++.+.+.+....+...-
T Consensus       207 ~ll~ag~din~~t~~gtal  225 (854)
T KOG0507|consen  207 ALLEAGFDINYTTEDGTAL  225 (854)
T ss_pred             HHHhcCCCcccccccchhh
Confidence            9999998888777665433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1e-21  Score=178.79  Aligned_cols=125  Identities=26%  Similarity=0.231  Sum_probs=110.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc--------------cCCchHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 041573           36 KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA--------------MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT  101 (238)
Q Consensus        36 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  101 (238)
                      ..|.||||+|+..|+.+++++|+++|++++.+.              ..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            469999999999999999999999999998653              358899999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHCC---------CHHHHHHHHhcCCCc-------cccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573          102 RKGLNPLHYAVQGS---------HLELVKYLLRKGASL-------TAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus       102 ~~g~t~L~~A~~~g---------~~~~~~~Ll~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      ..|+||||+|+..+         ...|.++++..++..       ++.|.+|.||||+|+..+..++++.+++..
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            99999999999987         344667777765554       678999999999999999999999998854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.87  E-value=2.9e-21  Score=129.63  Aligned_cols=89  Identities=36%  Similarity=0.686  Sum_probs=74.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHH
Q 041573           42 LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK  121 (238)
Q Consensus        42 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~  121 (238)
                      ||+||+.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6888888888888888888887776    778888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCccccC
Q 041573          122 YLLRKGASLTAKT  134 (238)
Q Consensus       122 ~Ll~~g~~~~~~~  134 (238)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            8888888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.1e-22  Score=158.31  Aligned_cols=154  Identities=23%  Similarity=0.264  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHhCC--------CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCcCccccCCchHHHHHHHc-----
Q 041573           16 DLKAVQSILISNP--------LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGAAAMDDMSAIHFASQK-----   81 (238)
Q Consensus        16 ~~~~v~~ll~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~-----   81 (238)
                      +.+.|..+|....        .-+|..|.+|+|+|||++.++++++|+.||+.| |+++..++-|+||+++++..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            4566665553322        237888999999999999999999999999996 89999999999999999864     


Q ss_pred             CCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           82 GHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      .+..+|..|+.. .++|++- ..|.|+|++|+.+|..++|+.||.-|+|+|++|.+|-|+|+.|+.+|+.+++++|+...
T Consensus       318 ~d~~vV~~LF~m-gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  318 ADRTVVERLFKM-GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhHHHHHHHHhc-cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            457789999887 4677664 57999999999999999999999999999999999999999999999999999998665


Q ss_pred             C-CCCCCCCCc
Q 041573          161 K-KPNLNGKEK  170 (238)
Q Consensus       161 ~-~~~~~~~~~  170 (238)
                      . +..+...++
T Consensus       397 ~cd~sLtD~Dg  407 (452)
T KOG0514|consen  397 SCDISLTDVDG  407 (452)
T ss_pred             cccceeecCCC
Confidence            3 333444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=5.8e-21  Score=173.83  Aligned_cols=145  Identities=26%  Similarity=0.327  Sum_probs=108.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHh-CCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCC-------------------
Q 041573            4 REEELHAAARSGDLKAVQSILIS-NPLSVNSRDKHSRTPLH-LAAWSGQTEVVSYLCKNKA-------------------   62 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~~Ll~~g~-------------------   62 (238)
                      ++..++.||..|+.+.++.++.. .+.++|..|..|.|||| .|+..++.+++++|+..|+                   
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence            45666677777777766655432 25666666666777777 6666666666666666552                   


Q ss_pred             -------------C------cC----ccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc--------------cCCC
Q 041573           63 -------------D------VG----AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT--------------RKGL  105 (238)
Q Consensus        63 -------------~------~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~  105 (238)
                                   .      ++    .....|.||||+|+..|+.++|++|+++|++++.++              ..|.
T Consensus        97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~  176 (743)
T TIGR00870        97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGE  176 (743)
T ss_pred             HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccc
Confidence                         0      00    012358899999999999999999999999998653              2588


Q ss_pred             cHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchh
Q 041573          106 NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE  148 (238)
Q Consensus       106 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  148 (238)
                      ||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..+
T Consensus       177 tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       177 SPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            9999999999999999999999999999999999999998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.86  E-value=3.2e-21  Score=167.12  Aligned_cols=158  Identities=26%  Similarity=0.287  Sum_probs=141.0

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHHHhCCCCcccC----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-------
Q 041573            3 NREEELHAAARS---GDLKAVQSILISNPLSVNSR----DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-------   68 (238)
Q Consensus         3 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-------   68 (238)
                      -|+|+||.|..+   ++.++++.||...+--+|..    ...|.||||+|+.+.+.++|++|++.|||++.+-       
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~  221 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP  221 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc
Confidence            489999999974   45688887887666444432    2679999999999999999999999999997651       


Q ss_pred             ----------------cCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC--c
Q 041573           69 ----------------MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS--L  130 (238)
Q Consensus        69 ----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--~  130 (238)
                                      ..|..||.+|+-.++.+++++|+++|+|++++|..|+|.||..+.+-..++..+++++|++  .
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~  301 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALE  301 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence                            1367899999999999999999999999999999999999999999889999999999999  8


Q ss_pred             cccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573          131 TAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus       131 ~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      .++|.+|.|||.+|++.+..++++.+++..
T Consensus       302 ~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  302 HVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             cccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            999999999999999999999999999884

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.9e-20  Score=162.37  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=140.6

Q ss_pred             CchHHHHHHHHcC-------CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHC-------------
Q 041573            3 NREEELHAAARSG-------DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG--QTEVVSYLCKN-------------   60 (238)
Q Consensus         3 ~~~t~L~~A~~~g-------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~-------------   60 (238)
                      .|.||||+|+..+       +.++++ +|+.+|++++..|..|.||||+|+...  ..+++++|++.             
T Consensus       174 ~g~t~L~~~i~~~s~~~~~~~~~v~k-~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~  252 (631)
T PHA02792        174 MGKTVLYYYIITRSQDGYATSLDVIN-YLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSN  252 (631)
T ss_pred             CCCchHHHHHhhCCcccccCCHHHHH-HHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHH
Confidence            6999999999999       899998 778999999999999999999999998  77888888741             


Q ss_pred             ------------------------------------------------------------------------------CC
Q 041573           61 ------------------------------------------------------------------------------KA   62 (238)
Q Consensus        61 ------------------------------------------------------------------------------g~   62 (238)
                                                                                                    |+
T Consensus       253 y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga  332 (631)
T PHA02792        253 YLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGA  332 (631)
T ss_pred             HHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCC
Confidence                                                                                          11


Q ss_pred             CcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCC--CcHHHHHHHCCCH---HHHHHHHhcCCCccccCCCC
Q 041573           63 DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG--LNPLHYAVQGSHL---ELVKYLLRKGASLTAKTKAG  137 (238)
Q Consensus        63 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~---~~~~~Ll~~g~~~~~~~~~g  137 (238)
                      ++.  ...+..+++.|+..|+.+++++|+.+|++++.+|..|  .||||+|+.....   +++++|+.+|++++.+|..|
T Consensus       333 ~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G  410 (631)
T PHA02792        333 TLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHG  410 (631)
T ss_pred             ccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccC
Confidence            111  1123456888999999999999999999999998775  6999998877654   46888999999999999999


Q ss_pred             CCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCC
Q 041573          138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAG  172 (238)
Q Consensus       138 ~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~  172 (238)
                      .||||+|+..+..+++++|+..+.+.+.....+..
T Consensus       411 ~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~T  445 (631)
T PHA02792        411 RSILYYCIESHSVSLVEWLIDNGADINITTKYGST  445 (631)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            99999999999999999999999887766554443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=5e-20  Score=159.77  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=129.9

Q ss_pred             HHHHHHHcC--CHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCC--chHHHHHHHcC
Q 041573            7 ELHAAARSG--DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKG   82 (238)
Q Consensus         7 ~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~   82 (238)
                      .||.-...+  ++++++ +|...|++.+  ...+..+++.|+..|+.+++++|+++|++++.+|..|  .||||+|+...
T Consensus       309 ~l~~Yl~~~~v~ieiIK-~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        309 LLSEYVSYHTVYINVIK-CMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHHhcCCccHHHHH-HHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence            456666666  688888 6667888765  2235667999999999999999999999999998775  69999988766


Q ss_pred             CH---HHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcc----------hhH
Q 041573           83 HL---EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARN----------EEI  149 (238)
Q Consensus        83 ~~---~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~----------~~~  149 (238)
                      ..   +++++|+.+|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|..          ...
T Consensus       386 ~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~  465 (631)
T PHA02792        386 ESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELY  465 (631)
T ss_pred             cHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHH
Confidence            54   46899999999999999999999999999999999999999999999999999999999964          334


Q ss_pred             HHHHHHHHhhcCCC
Q 041573          150 RSFLEEWEQSSKKP  163 (238)
Q Consensus       150 ~~~~~~l~~~~~~~  163 (238)
                      .++++.+++.+...
T Consensus       466 ~~il~lLLs~~p~i  479 (631)
T PHA02792        466 IKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHHhcCCCh
Confidence            56788888777554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=7.8e-20  Score=129.57  Aligned_cols=123  Identities=41%  Similarity=0.668  Sum_probs=109.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHH
Q 041573           34 RDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ  113 (238)
Q Consensus        34 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  113 (238)
                      .+..|.||||+|+..++.+++++|+..|.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999888888899999999999999999999999998888888889999999999


Q ss_pred             CCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573          114 GSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus       114 ~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      .++.+++++|+..|.+++..+..|.||+++|...+...+++.|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            9999999999999988888999999999999888777777765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-20  Score=161.26  Aligned_cols=155  Identities=30%  Similarity=0.370  Sum_probs=146.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCC------------CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCc
Q 041573            5 EEELHAAARSGDLKAVQSILISNP------------LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM   72 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~   72 (238)
                      .+-|..|+..|+++.+..+|...+            ..+|..|.+|.|+||.||..|+.+++++|+++.+-++..+..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            467889999999999997875432            46888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHH
Q 041573           73 SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF  152 (238)
Q Consensus        73 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  152 (238)
                      +|||+|+..|+.+++++|+.++..+|+.+..|.||||.|+++|+.+++.+|+.+|+++-++|+++.|||++|+..|...+
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~V  163 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEV  163 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 041573          153 LEEWEQS  159 (238)
Q Consensus       153 ~~~l~~~  159 (238)
                      ++.|++.
T Consensus       164 vq~ll~~  170 (854)
T KOG0507|consen  164 VQMLLQK  170 (854)
T ss_pred             HHHHhhh
Confidence            9999877

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=9.3e-20  Score=122.27  Aligned_cols=89  Identities=33%  Similarity=0.549  Sum_probs=80.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHH
Q 041573            8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVV   87 (238)
Q Consensus         8 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   87 (238)
                      ||.||..|+.++++.|+. .+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            799999999999996665 7777765    89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCccccc
Q 041573           88 RTLVSSGVSIKACT  101 (238)
Q Consensus        88 ~~Ll~~g~~~~~~~  101 (238)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=1.6e-18  Score=122.73  Aligned_cols=121  Identities=40%  Similarity=0.657  Sum_probs=113.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.||||.|+..|+.++++.+ ...+.+.+..+..|.+|||+|+..++.+++++|+..|+.++..+..|.||+|+|+..+
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~l-i~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLL-LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHH-HHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            589999999999999999854 4667777888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL  124 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  124 (238)
                      +.+++++|+..|.+++..+..|.||+++|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.80  E-value=3.4e-19  Score=115.08  Aligned_cols=112  Identities=26%  Similarity=0.430  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHH
Q 041573           41 PLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV  120 (238)
Q Consensus        41 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~  120 (238)
                      -+.+++.+|.++-|+..+..|.++|.. ..|++|||||+-+|+.+++++|+..|++++.+|+.|-|||..|+..||.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            467788888888888888888777744 3789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCCHHHhhcchhHHHHH
Q 041573          121 KYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL  153 (238)
Q Consensus       121 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~  153 (238)
                      ++|++.|++..++..+|.+.+..+.....++++
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence            999999999999999998888877766665544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.5e-19  Score=138.93  Aligned_cols=128  Identities=32%  Similarity=0.461  Sum_probs=110.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      -|.+|||+||+.|+..++. .|+..|+-+|..+....||||+|+.+|+.++|+.|+++.+++|..+..|+|||||||.-|
T Consensus        33 hgfsplhwaakegh~aive-mll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwg  111 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVE-MLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWG  111 (448)
T ss_pred             cCcchhhhhhhcccHHHHH-HHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhc
Confidence            3789999999999999998 666779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCcc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT  131 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~  131 (238)
                      +-.+++-|+.+|+.++..++.|.|||..|--.-...+.+..-++|.+++
T Consensus       112 ydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  112 YDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999998732211122222233566665

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.78  E-value=1.3e-17  Score=129.99  Aligned_cols=132  Identities=29%  Similarity=0.429  Sum_probs=123.7

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC-----HHHHHHHHHCCC---Ccccc
Q 041573           29 LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH-----LEVVRTLVSSGV---SIKAC  100 (238)
Q Consensus        29 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~---~~~~~  100 (238)
                      ......+..+.++++.++..+...++.+++..|++++..+..|.||||+|+..++     .+++++|+..|+   ..+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            3444556678999999999999999999999999999999999999999999999     999999999999   66777


Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573          101 TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus       101 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      +..|+||||+|+..|+.+++++|+..|++++.++..|.||+++|+..+...++..+...+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999998876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=6.4e-17  Score=126.17  Aligned_cols=123  Identities=34%  Similarity=0.500  Sum_probs=116.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CcCccccCCchHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ-----TEVVSYLCKNKA---DVGAAAMDDMSAI   75 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~g~---~~~~~~~~g~t~L   75 (238)
                      +.+++|.++..++..++. ++...+.+++.++..|.||||+|+..++     .++++.|++.|+   ..+..+..|.|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIVK-LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHHH-HHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            678999999999999996 6667899999999999999999999999     999999999999   6676799999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC
Q 041573           76 HFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG  127 (238)
Q Consensus        76 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  127 (238)
                      |+|+..|+.+++.+|+..|++++..+..|.|++++|+..++..++..++..+
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999976

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=7.5e-17  Score=140.28  Aligned_cols=123  Identities=24%  Similarity=0.314  Sum_probs=114.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCC-----------------------CCCCcHHHHHHHcCCHHHHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRD-----------------------KHSRTPLHLAAWSGQTEVVSYLCK   59 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------------~~g~t~L~~A~~~g~~~~~~~Ll~   59 (238)
                      -|.|+||.|+.+.+.+.|+ +|...|+|++.+-                       +.|..||-+||..++.+++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~-lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVR-LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHH-HHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            3899999999999999999 6678899888651                       247889999999999999999999


Q ss_pred             CCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCC--ccccccCCCcHHHHHHHCCCHHHHHHHHhc
Q 041573           60 NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS--IKACTRKGLNPLHYAVQGSHLELVKYLLRK  126 (238)
Q Consensus        60 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  126 (238)
                      +|+|++.+|+.|+|.||..+..-..+|.++++.+|++  ...+|..|-|||.+|+..|..++.+.+++.
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999899999999999999  889999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=7.7e-17  Score=104.22  Aligned_cols=104  Identities=22%  Similarity=0.307  Sum_probs=92.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE   85 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   85 (238)
                      ..+.+++++|.++.|+..+.. +.++|.. ..|++|||||+-+|..+++++|+..|++++.+|..|-|||..|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            567899999999999987755 4777755 48999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCccccccCCCcHHHHH
Q 041573           86 VVRTLVSSGVSIKACTRKGLNPLHYA  111 (238)
Q Consensus        86 ~v~~Ll~~g~~~~~~~~~g~t~L~~A  111 (238)
                      +|++|+++|++-....-+|.+.+-.+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999888777776655443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.69  E-value=2e-16  Score=141.66  Aligned_cols=105  Identities=29%  Similarity=0.366  Sum_probs=99.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHH
Q 041573           41 PLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV  120 (238)
Q Consensus        41 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~  120 (238)
                      .|+.|+..|+.+++++|+..|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-------CCCccccCCCCCCHHHhhc
Q 041573          121 KYLLRK-------GASLTAKTKAGKTPLDLAR  145 (238)
Q Consensus       121 ~~Ll~~-------g~~~~~~~~~g~tpl~~A~  145 (238)
                      ++|+.+       |++++..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999998       9999998988888876553

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.67  E-value=6.2e-17  Score=144.24  Aligned_cols=167  Identities=26%  Similarity=0.349  Sum_probs=147.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCc-cccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA-AAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   81 (238)
                      |=.|+|..||..|+.+++. ||...|.++..+|..|.+||.+|+..|+..+|+.|+++.++++. .|+.+.|+|.+||..
T Consensus       756 n~~t~LT~acaggh~e~ve-llv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVE-LLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccccCccHHHHH-HHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            4468899999999999997 67778999999999999999999999999999999999988877 467789999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC--CCCCCHHHhhcchhHHHHHHHHHhh
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT--KAGKTPLDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~--~~g~tpl~~A~~~~~~~~~~~l~~~  159 (238)
                      |..++|++||..|++-..++....|||.+|...|..+++.+|+..|+.++.+.  ..|-.||++|...++....+.|++.
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~  914 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP  914 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc
Confidence            99999999999999998888888999999999999999999999998888776  5688999999999999999998888


Q ss_pred             cCCCCCCCCCc
Q 041573          160 SKKPNLNGKEK  170 (238)
Q Consensus       160 ~~~~~~~~~~~  170 (238)
                      +.+.+...+.+
T Consensus       915 gsdiNaqIeTN  925 (2131)
T KOG4369|consen  915 GSDINAQIETN  925 (2131)
T ss_pred             cchhccccccc
Confidence            88877665544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=7.5e-17  Score=98.10  Aligned_cols=55  Identities=42%  Similarity=0.671  Sum_probs=28.1

Q ss_pred             HHHCC-CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhh
Q 041573           90 LVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA  144 (238)
Q Consensus        90 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A  144 (238)
                      |+++| ++++.+|..|+||||+|+..|+.+++++|++.|++++++|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77788888888888888888888888888888888888888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=1.2e-15  Score=118.37  Aligned_cols=123  Identities=24%  Similarity=0.276  Sum_probs=111.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-cCCchHHHHHHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-MDDMSAIHFASQ   80 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~   80 (238)
                      ..-.++|..++..|+.+....||.. --.+|.+|..|+++|..|+..|+.+.+++||+.|+|+|... ..+.||||+|+.
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            3567899999999999999877754 44689999999999999999999999999999999999754 558999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHh
Q 041573           81 KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR  125 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~  125 (238)
                      .|+.+++++|++.|+.+...+.-|+|+-..|+.-|+.+||..+-.
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999999999999999999987743

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=1.9e-15  Score=135.44  Aligned_cols=106  Identities=32%  Similarity=0.386  Sum_probs=97.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE   85 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   85 (238)
                      ..|+.|+..|+.+.++ +|...|+++|.+|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk-~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGAR-ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            3588999999999998 555789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHC-------CCCccccccCCCcHHHHHH
Q 041573           86 VVRTLVSS-------GVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        86 ~v~~Ll~~-------g~~~~~~~~~g~t~L~~A~  112 (238)
                      ++++|+.+       |++++..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999998       8888888888887776554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=1.4e-15  Score=126.60  Aligned_cols=121  Identities=24%  Similarity=0.329  Sum_probs=107.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHH
Q 041573           42 LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK  121 (238)
Q Consensus        42 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~  121 (238)
                      |.-|+..|-+++|+..+..--|+..-+..|-|+||-|+-.||.+||++|+++|+++|..|.+||||||+|+.++++-+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            45578889999999999998899888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccC-CCCCCHHHhhc--chhHHHHHHHHHhhcCC
Q 041573          122 YLLRKGASLTAKT-KAGKTPLDLAR--NEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       122 ~Ll~~g~~~~~~~-~~g~tpl~~A~--~~~~~~~~~~l~~~~~~  162 (238)
                      .|++.|+.+-+.. .++.||..-+.  ..|...|.++|......
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqes  677 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQES  677 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHh
Confidence            9999999887665 67889988885  67788888887654433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.61  E-value=4e-15  Score=115.47  Aligned_cols=120  Identities=22%  Similarity=0.268  Sum_probs=110.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHCCC
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSH  116 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~  116 (238)
                      -..||.-++-.+..+-+..||..--.+|.+|..|+++|..|+..|+.++|++|++.|+|+|... ..+.||||.|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            4678999999999999999998877799999999999999999999999999999999999754 578999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573          117 LELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus       117 ~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                      .++.++|++.|+.+...|.-|+|+-++|+-.|+-+++..+-
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999999999999999999999999999877777766543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.60  E-value=9e-16  Score=93.31  Aligned_cols=54  Identities=39%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             HHCC-CCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHH
Q 041573           58 CKNK-ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA  111 (238)
Q Consensus        58 l~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  111 (238)
                      |++| ++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            3444 55555555555555555555555555555555555555555555555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.59  E-value=4.9e-15  Score=89.51  Aligned_cols=53  Identities=40%  Similarity=0.688  Sum_probs=23.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHH
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL   90 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   90 (238)
                      |+||||+||..|+.+++++|++.|++++.+|.+|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34445555555555555555544444444444444455544444444444444

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=6e-15  Score=122.82  Aligned_cols=118  Identities=26%  Similarity=0.309  Sum_probs=103.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHH
Q 041573            7 ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEV   86 (238)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   86 (238)
                      .|.-|+..|-+++|+.++.+ -.|+...+..|.|+||-|+..|+++||++||+.|+++|..|.+||||||+|+..+++.|
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            46789999999999977643 45677778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCccccc-cCCCcHHHHHH--HCCCHHHHHHHHh
Q 041573           87 VRTLVSSGVSIKACT-RKGLNPLHYAV--QGSHLELVKYLLR  125 (238)
Q Consensus        87 v~~Ll~~g~~~~~~~-~~g~t~L~~A~--~~g~~~~~~~Ll~  125 (238)
                      ++.|++.|+-+.+.. .++.|+..-|-  ..|...|..+|..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999887765 46788877764  5678899999854

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.59  E-value=5e-15  Score=89.49  Aligned_cols=54  Identities=37%  Similarity=0.765  Sum_probs=40.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHH
Q 041573           71 DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL  124 (238)
Q Consensus        71 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  124 (238)
                      |+||||+|+..|+.+++++|++.|.+++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888888888888888888888888888888888875

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.55  E-value=4.9e-15  Score=132.41  Aligned_cols=166  Identities=25%  Similarity=0.318  Sum_probs=124.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|.+||..|+-.||..+|..|| ..-++++.. |..+.|+|.+||..|+.+++++||..|++-..++....|||.+|...
T Consensus       789 kgf~plImaatagh~tvV~~ll-k~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg  867 (2131)
T KOG4369|consen  789 KGFVPLIMAATAGHITVVQDLL-KAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG  867 (2131)
T ss_pred             ccchhhhhhcccCchHHHHHHH-hhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc
Confidence            4678888888888888888554 444555543 56788888888888888888888888888877877788888888888


Q ss_pred             CCHHHHHHHHHCCCCccccc--cCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC-CCCCCHHHhhcchhHHHHHHHHHh
Q 041573           82 GHLEVVRTLVSSGVSIKACT--RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT-KAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      |++++|..|+..|..+|.+.  +.|-.||++|..+|+...++.|++.|-++|..- .+.+|+|.+|+..+..+++.+|+.
T Consensus       868 gy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa  947 (2131)
T KOG4369|consen  868 GYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA  947 (2131)
T ss_pred             chHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH
Confidence            88888888888887777654  567788888888888888888888887777654 456677777777777777777776


Q ss_pred             hcCCCCCCCCC
Q 041573          159 SSKKPNLNGKE  169 (238)
Q Consensus       159 ~~~~~~~~~~~  169 (238)
                      +......+-+.
T Consensus       948 ~~anvehRakt  958 (2131)
T KOG4369|consen  948 AQANVEHRAKT  958 (2131)
T ss_pred             Hhhhhhhhccc
Confidence            66555444443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.22  E-value=6.4e-12  Score=109.97  Aligned_cols=83  Identities=25%  Similarity=0.378  Sum_probs=63.8

Q ss_pred             cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCcccccc-CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHH
Q 041573           64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR-KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD  142 (238)
Q Consensus        64 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~  142 (238)
                      .|++|..|+|+||+++..+...++++|+++|++++.+|. .|+||||-|+.+|+.+|+-+|+.+|+.+.++|.+|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            566777777788877777777777888877777777774 5778888888888888888888888777777877887777


Q ss_pred             hhcc
Q 041573          143 LARN  146 (238)
Q Consensus       143 ~A~~  146 (238)
                      ...+
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-10  Score=96.34  Aligned_cols=80  Identities=29%  Similarity=0.406  Sum_probs=71.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHH
Q 041573           74 AIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF  152 (238)
Q Consensus        74 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  152 (238)
                      -||..++.|+.+.+-.||..|+++|..+ ..|.||||+|++.|+..-+++|+-+|||+...|.+|.||+.+|...|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4899999999999999999999999988 469999999999999999999999999999999999999999976555444


Q ss_pred             H
Q 041573          153 L  153 (238)
Q Consensus       153 ~  153 (238)
                      .
T Consensus       216 a  216 (669)
T KOG0818|consen  216 A  216 (669)
T ss_pred             H
Confidence            3

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.11  E-value=4e-10  Score=93.76  Aligned_cols=93  Identities=28%  Similarity=0.365  Sum_probs=81.8

Q ss_pred             cCCCCCCcH------HHHHHHcCCHHHHHHHHHCCCCcCcccc-CCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCC
Q 041573           33 SRDKHSRTP------LHLAAWSGQTEVVSYLCKNKADVGAAAM-DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGL  105 (238)
Q Consensus        33 ~~~~~g~t~------L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  105 (238)
                      .+|.+|-+.      ||..++.|+.+..-.||..|+++|.-+. .|.||||.|++.|+..-+++|+-+|+|++..|..|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            345555543      8999999999999999999999998775 489999999999999999999999999999999999


Q ss_pred             cHHHHHHHCCCHHHHHHHHh
Q 041573          106 NPLHYAVQGSHLELVKYLLR  125 (238)
Q Consensus       106 t~L~~A~~~g~~~~~~~Ll~  125 (238)
                      ||+.+|-..||.++.+-|++
T Consensus       202 tP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHH
Confidence            99999999999888777765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.09  E-value=1.2e-10  Score=96.35  Aligned_cols=101  Identities=24%  Similarity=0.394  Sum_probs=88.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc-CCCccccCCCCCCHHHhhcchh
Q 041573           70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGKTPLDLARNEE  148 (238)
Q Consensus        70 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~  148 (238)
                      .+..++++|++.|.+..++.+.-.|.|++.+|.+.+|+||+|+..|+++++++|++. +.+++.+|..|+|||+-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            456789999999999999999999999999999999999999999999999999986 8999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCc
Q 041573          149 IRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       149 ~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      +.+++++|.+..........+.
T Consensus       585 h~~v~k~L~~~~~~y~~~~~~~  606 (622)
T KOG0506|consen  585 HKEVVKLLEEAQYPYTLMPEQD  606 (622)
T ss_pred             cHHHHHHHHHHhcccccCchhh
Confidence            9999999887776555444433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.08  E-value=7.1e-11  Score=103.61  Aligned_cols=96  Identities=23%  Similarity=0.364  Sum_probs=84.9

Q ss_pred             HHHHHHHhC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccC-CchHHHHHHHcCCHHHHHHHHHCCCC
Q 041573           19 AVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-DMSAIHFASQKGHLEVVRTLVSSGVS   96 (238)
Q Consensus        19 ~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~   96 (238)
                      .++.++.+. +--.|..|..|+|+||+|+..+..+++++||++|++++.+|.. |+||||-|+.+|+++++.+||.+|+.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            355455332 2237788999999999999999999999999999999999964 99999999999999999999999999


Q ss_pred             ccccccCCCcHHHHHHHC
Q 041573           97 IKACTRKGLNPLHYAVQG  114 (238)
Q Consensus        97 ~~~~~~~g~t~L~~A~~~  114 (238)
                      +..+|+.|..||...++-
T Consensus       112 L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             eEEecccCCCHHHHHhhc
Confidence            999999999999988773

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.06  E-value=2e-10  Score=95.13  Aligned_cols=93  Identities=28%  Similarity=0.339  Sum_probs=86.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHH-CCCCccccccCCCcHHHHHHHC
Q 041573           36 KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQG  114 (238)
Q Consensus        36 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  114 (238)
                      .++..++++|+..|.+..++.+.-.|.|++.+|.+.+|+||.|+..|+++++++|++ .+.+++.+|.+|+|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            345678999999999999999999999999999999999999999999999999997 5899999999999999999999


Q ss_pred             CCHHHHHHHHhcCC
Q 041573          115 SHLELVKYLLRKGA  128 (238)
Q Consensus       115 g~~~~~~~Ll~~g~  128 (238)
                      +|.+++++|-++..
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999988644

>PF13606 Ank_3: Ankyrin repeat

Probab=99.04  E-value=3.7e-10  Score=58.98  Aligned_cols=29  Identities=45%  Similarity=0.823  Sum_probs=21.7

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCcc
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLT  131 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~  131 (238)
                      +|+||||+|+..|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.02  E-value=5.2e-10  Score=60.03  Aligned_cols=32  Identities=47%  Similarity=0.829  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCccccC
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKT  134 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~  134 (238)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            46788888888888888888888888877766

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.00  E-value=2.5e-09  Score=90.55  Aligned_cols=94  Identities=28%  Similarity=0.377  Sum_probs=45.6

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcH
Q 041573           30 SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD--VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP  107 (238)
Q Consensus        30 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  107 (238)
                      ++..++.+..+.||+|+..|+-++|+++|++|..  +++.+..|.|+||-|+..++..++.+|++.|+.+...|..|.||
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP  970 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence            3444444555555555555555555555555432  33344444445554444444444444444444444444444444


Q ss_pred             HHHHHHCCCHHHHHHH
Q 041573          108 LHYAVQGSHLELVKYL  123 (238)
Q Consensus       108 L~~A~~~g~~~~~~~L  123 (238)
                      -.-|-+.|..+++-+|
T Consensus       971 ~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  971 QERAQQAGDPDLAAYL  986 (1004)
T ss_pred             HHHHHhcCCchHHHHH
Confidence            4444444444444444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.00  E-value=1.6e-09  Score=91.78  Aligned_cols=88  Identities=25%  Similarity=0.323  Sum_probs=49.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCc----cccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCH
Q 041573           42 LHLAAWSGQTEVVSYLCKNKADVGA----AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL  117 (238)
Q Consensus        42 L~~A~~~g~~~~~~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  117 (238)
                      |..|+...++..+-+||.+|.....    -+.+|.|+||+||..|++.+.++|+-+|+|+..+|.+|+|+|+||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            3444444455555555555433221    123455666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCC
Q 041573          118 ELVKYLLRKGAS  129 (238)
Q Consensus       118 ~~~~~Ll~~g~~  129 (238)
                      +|+.+|+++|+.
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            666666666554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.98  E-value=8.6e-10  Score=57.57  Aligned_cols=29  Identities=52%  Similarity=0.779  Sum_probs=19.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcC
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKNKADVG   65 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~   65 (238)
                      +|+||||+||..|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36666666666666666666666666665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.96  E-value=3.2e-09  Score=89.92  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=102.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCC--ccccccCCCcHHHHHHHCCCHHH
Q 041573           42 LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS--IKACTRKGLNPLHYAVQGSHLEL  119 (238)
Q Consensus        42 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~  119 (238)
                      +..|+..+++--+.-+-..|.++-.++.+..+.||+|+..|+-++|++++.+|..  ++..+..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3445555555555555567888888888999999999999999999999999864  56677899999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          120 VKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      ..+|++.|+.+...|..|.||-.-|...+..++..+|.....
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            999999999999999999999999999999988888875543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.91  E-value=2.7e-09  Score=57.21  Aligned_cols=31  Identities=42%  Similarity=0.622  Sum_probs=18.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcCccc
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADVGAAA   68 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~   68 (238)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666665544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.88  E-value=6.6e-09  Score=87.38  Aligned_cols=85  Identities=29%  Similarity=0.408  Sum_probs=46.5

Q ss_pred             HHHHHHcCCHHHHHHHH-HhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHH
Q 041573            8 LHAAARSGDLKAVQSIL-ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEV   86 (238)
Q Consensus         8 L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   86 (238)
                      +|.++...+.+.+...+ ......++.+|..|.||||+|+..|+..+++.|+..|+++-.++..|++|||-|+..|+.++
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~  103 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQI  103 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHH
Confidence            55555555554443322 22334455555555666666666666666666666666555555556666666655555555


Q ss_pred             HHHHHH
Q 041573           87 VRTLVS   92 (238)
Q Consensus        87 v~~Ll~   92 (238)
                      +..++.
T Consensus       104 i~~vlr  109 (560)
T KOG0522|consen  104 ITEVLR  109 (560)
T ss_pred             HHHHHH
Confidence            555544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.86  E-value=5.4e-09  Score=87.92  Aligned_cols=87  Identities=24%  Similarity=0.389  Sum_probs=76.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHH--CCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCH
Q 041573           40 TPLHLAAWSGQTEVVSYLCK--NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL  117 (238)
Q Consensus        40 t~L~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  117 (238)
                      -|+|++......+-+..++.  .+..++.+|..|.||||+|+..|+...++.|+.+|+++..+|..||+|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45999999888876665443  3667888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 041573          118 ELVKYLLRK  126 (238)
Q Consensus       118 ~~~~~Ll~~  126 (238)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            988888776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.86  E-value=1.6e-08  Score=89.56  Aligned_cols=123  Identities=24%  Similarity=0.316  Sum_probs=102.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNP---LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ   80 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   80 (238)
                      ++--...|+..|+...|+..|....   .++|..|.-|+++|+.|+.+-+.+++++|++.....       ..+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            4455678999999999998886543   588999999999999999999999999999997655       358899999


Q ss_pred             cCCHHHHHHHHHCCCCc----------cccccCCCcHHHHHHHCCCHHHHHHHHhcCCCcccc
Q 041573           81 KGHLEVVRTLVSSGVSI----------KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK  133 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~  133 (238)
                      .|..++|++++.+-...          ...-..+-|||++||..++.+|+++|+.+|+.+...
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            99999999999864332          122234679999999999999999999999987543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.85  E-value=2.1e-08  Score=85.16  Aligned_cols=92  Identities=20%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCc----cccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHH
Q 041573           75 IHFASQKGHLEVVRTLVSSGVSI----KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR  150 (238)
Q Consensus        75 L~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  150 (238)
                      |.-|+...+...+-+||.+|...    ...+.+|+|+||+||..|++.+.++|+=+|+|+.++|..|+|||.||...+..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            55666777788889999988543    23456789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCC
Q 041573          151 SFLEEWEQSSKKPNLN  166 (238)
Q Consensus       151 ~~~~~l~~~~~~~~~~  166 (238)
                      +++..|++++-....-
T Consensus       708 ec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDECG  723 (749)
T ss_pred             HHHHHHHHcCCCcccc
Confidence            9999999999765433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.72  E-value=7.4e-08  Score=78.15  Aligned_cols=83  Identities=29%  Similarity=0.332  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHH
Q 041573           41 PLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV  120 (238)
Q Consensus        41 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~  120 (238)
                      -|..||+.|..+.|++|++.|.++|.+|.+..+||.+|+..||..+|++|+++|+-...-...|.-+ |+++.+  ..|-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn--d~IR  115 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN--DRIR  115 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh--HHHH
Confidence            3677888888888888888888888888888888888888888888888888887554433445443 333332  2444


Q ss_pred             HHHHhc
Q 041573          121 KYLLRK  126 (238)
Q Consensus       121 ~~Ll~~  126 (238)
                      ++|+.+
T Consensus       116 ~mllsy  121 (516)
T KOG0511|consen  116 RMLLSY  121 (516)
T ss_pred             HHHHHH
Confidence            555554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.70  E-value=9.9e-09  Score=92.73  Aligned_cols=84  Identities=31%  Similarity=0.442  Sum_probs=77.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhH
Q 041573           70 DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEI  149 (238)
Q Consensus        70 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  149 (238)
                      .|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+...|+...+..|+.+|+++++.+..|.+|+++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999964444


Q ss_pred             HHHH
Q 041573          150 RSFL  153 (238)
Q Consensus       150 ~~~~  153 (238)
                      ..+.
T Consensus       735 ~d~~  738 (785)
T KOG0521|consen  735 ADIV  738 (785)
T ss_pred             ccHH
Confidence            4333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.62  E-value=3e-08  Score=89.57  Aligned_cols=124  Identities=25%  Similarity=0.252  Sum_probs=99.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           34 RDKHSRTPLHLAAWSGQTEVVSYLCKN-KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        34 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      ....|++.+|+++..+..-.++.+++. |-.....+.+|...+|+++..|..-.+..+.-.|..++.+|..||||||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            345789999999999999999999997 7777778888888999966655544444555679999999999999999999


Q ss_pred             HCCCHHHHHHHHhcCCCc------cccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573          113 QGSHLELVKYLLRKGASL------TAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus       113 ~~g~~~~~~~Ll~~g~~~------~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                      ..|+..++..|+..|++.      .-.+..|.|+-.+|...+...+--+|.
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            999999999999887754      334556999999997666555544443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.61  E-value=1.5e-07  Score=69.47  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             CCCcCccccCCchHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCc
Q 041573           61 KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL  130 (238)
Q Consensus        61 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~  130 (238)
                      +.++|.+|..|+|++++|+..|..+.+.+|+.+| +.+...|..|.+++.+|-+.|..+++..|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4577888888888888888888888888888888 778888888888888888888888888888774443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.58  E-value=1.7e-07  Score=69.16  Aligned_cols=71  Identities=30%  Similarity=0.358  Sum_probs=65.5

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCcc
Q 041573           28 PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK   98 (238)
Q Consensus        28 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   98 (238)
                      +.++|.+|.+|||+|++|+..|+.+.+.+|+.+| +.+...|..+.+.+.+|-..|..+++..|.+.-.+-.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            4689999999999999999999999999999999 9999999999999999999999999999998744433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=3.6e-07  Score=74.28  Aligned_cols=122  Identities=26%  Similarity=0.395  Sum_probs=80.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE   85 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   85 (238)
                      -.|..||+.|+.+.|+.|+ ..|.++|..|.+..+||.+|+..||.+++++|+++|+.-..-..+|..+ ||++.+.  .
T Consensus        38 ~elceacR~GD~d~v~~LV-etgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd--~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLV-ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND--R  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHH-HhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH--H
Confidence            4578999999999999666 4899999999999999999999999999999999998777666667654 4444432  3


Q ss_pred             HHHHHHHCCCCccccccCCCcHHHHHHHCCC-----HHHHHHHHhcCCCccc
Q 041573           86 VVRTLVSSGVSIKACTRKGLNPLHYAVQGSH-----LELVKYLLRKGASLTA  132 (238)
Q Consensus        86 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~g~~~~~  132 (238)
                      +-+.|+.+... .+.|...-.+-|+.....+     ..=+-++.+.|+..++
T Consensus       114 IR~mllsydi~-KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~a  164 (516)
T KOG0511|consen  114 IRRMLLSYDIL-KAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDA  164 (516)
T ss_pred             HHHHHHHHHHH-HHhhccCCcchHHHHHhhccccccccchHHHhhccccccH
Confidence            33444443211 1122222223344443322     2235667777877643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.53  E-value=1.1e-07  Score=86.06  Aligned_cols=97  Identities=26%  Similarity=0.312  Sum_probs=85.5

Q ss_pred             CCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCC
Q 041573           28 PLSVNSRD--KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGL  105 (238)
Q Consensus        28 ~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  105 (238)
                      ++.+|+.+  ..|.|+||.|+..|..-..++|+++|+++|.+|..|.+|||.+...|+...+.+|++.|+++++.+..|.
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~  723 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGK  723 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCc
Confidence            34444432  4679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHCCCHHHHHHHH
Q 041573          106 NPLHYAVQGSHLELVKYLL  124 (238)
Q Consensus       106 t~L~~A~~~g~~~~~~~Ll  124 (238)
                      +||++|....+.+++-++.
T Consensus       724 ~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  724 LPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             chhhHHhhhccccHHHHHh
Confidence            9999998776666655543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.40  E-value=1.4e-06  Score=77.67  Aligned_cols=129  Identities=18%  Similarity=0.135  Sum_probs=105.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC----CCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKN----KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      .+.--+..|+..|+...|+..++.    ..++|.+|.-|.++|++|..+.+.+++++|++++...       ..+|-+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            344567889999999999999886    2578899999999999999999999999999987665       35889999


Q ss_pred             HCCCHHHHHHHHhcCCCc----------cccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCC
Q 041573          113 QGSHLELVKYLLRKGASL----------TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAG  172 (238)
Q Consensus       113 ~~g~~~~~~~Ll~~g~~~----------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~  172 (238)
                      ..|.+.+|++++.+-...          ...-..+-||+.+|+..++.+|++.|+..+......-.....
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~  166 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCE  166 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccC
Confidence            999999999999873322          122345789999999999999999999999877655554433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.27  E-value=1e-06  Score=79.96  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCcCccccCCchHHHHHHHcC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK-NKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      |++.+|.++..++.-.+..++.-.+......|.+|.-.+|++ ..+++++.-+|+. .|..++.+|..|+||||+|+.+|
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            678999999999998888777644555555667777778884 4555665555554 59999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccc------cccCCCcHHHHHHHCCCHHHHHHHHhc
Q 041573           83 HLEVVRTLVSSGVSIKA------CTRKGLNPLHYAVQGSHLELVKYLLRK  126 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~~~~Ll~~  126 (238)
                      +..++..|+..|++...      ..-.|.|+-.+|...|+..+.-+|-+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999988766543      334589999999999998888777654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.06  E-value=1.3e-05  Score=67.58  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=63.9

Q ss_pred             HHHHHHHHHCCCCccc------cccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573           84 LEVVRTLVSSGVSIKA------CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                      ...+++|.+++++.|.      .+..-.|+||+|+..|...||.+||+.|+|+..+|..|+||+.++.+.....++....
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~~  483 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIARR  483 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHHHH
Confidence            5577888888777653      2334569999999999999999999999999999999999999999988888887544


Q ss_pred             hhc
Q 041573          158 QSS  160 (238)
Q Consensus       158 ~~~  160 (238)
                      ..+
T Consensus       484 ~l~  486 (591)
T KOG2505|consen  484 VLN  486 (591)
T ss_pred             Hhc
Confidence            333

>smart00248 ANK ankyrin repeats

Probab=97.54  E-value=0.00019  Score=35.82  Aligned_cols=27  Identities=52%  Similarity=0.838  Sum_probs=18.7

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhcCCCc
Q 041573          104 GLNPLHYAVQGSHLELVKYLLRKGASL  130 (238)
Q Consensus       104 g~t~L~~A~~~g~~~~~~~Ll~~g~~~  130 (238)
                      |.||+|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777766654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.39  E-value=0.00042  Score=34.46  Aligned_cols=27  Identities=56%  Similarity=0.741  Sum_probs=14.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCc
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADV   64 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~   64 (238)
                      |.||||+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.28  E-value=0.00037  Score=59.02  Aligned_cols=62  Identities=15%  Similarity=0.220  Sum_probs=53.0

Q ss_pred             HHHHHHHHHCCCCcCcc------ccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           51 TEVVSYLCKNKADVGAA------AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        51 ~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      ...+++|.+++...|..      +..--|+||+|+..|...+|.+||..|+|+..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788888887665432      333569999999999999999999999999999999999999987

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.99  E-value=0.11  Score=38.87  Aligned_cols=135  Identities=17%  Similarity=0.088  Sum_probs=88.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHH
Q 041573            8 LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVV   87 (238)
Q Consensus         8 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   87 (238)
                      |-.|+..+-+++++.+-....-.    -...++.+-.||+..+.++|+++-+.=...+     -.+.+-.|....+.++.
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i~~-----~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHIYN-----PEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCCCC-----chhhhhhhhhccchhHH
Confidence            45677888888887553221111    1345678889999999999999844322222     22455677777776652


Q ss_pred             ----HHHHHCCCCcccccc--CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573           88 ----RTLVSSGVSIKACTR--KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus        88 ----~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                          .+++.+...-...|.  --..-|..|+..|...-+--.+++|.+++.      ++|..|+.++.+.++.+++
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence                223333211101010  011357889999999999999999998864      8999999999999999876

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.83  E-value=0.064  Score=41.45  Aligned_cols=111  Identities=17%  Similarity=0.345  Sum_probs=64.8

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC----CCcCccccCCchHHHHHHH--cC
Q 041573            9 HAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK----ADVGAAAMDDMSAIHFASQ--KG   82 (238)
Q Consensus         9 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~--~~   82 (238)
                      --|+..-+++.+..++...+        .-.+++.+++..+..+++-+|+.+-    .++-.. ..+.--+-|+..  ..
T Consensus       158 edAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  158 EDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCC
Confidence            34555556655554442211        2345777777777778888877651    111000 112223444433  23


Q ss_pred             CHHHHHHHHHCC-CCcccc---ccCCCcHHHHHHHCCCHHHHHHHHhcCC
Q 041573           83 HLEVVRTLVSSG-VSIKAC---TRKGLNPLHYAVQGSHLELVKYLLRKGA  128 (238)
Q Consensus        83 ~~~~v~~Ll~~g-~~~~~~---~~~g~t~L~~A~~~g~~~~~~~Ll~~g~  128 (238)
                      ...++++++..| +++|.+   -..|.|-|.-|++++..+++.+|+++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            456777777777 445543   3457788888888888888888888877

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.17  E-value=0.15  Score=38.09  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCcCccccC--CchHHHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVV----SYLCKNKADVGAAAMD--DMSAIHF   77 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~----~~Ll~~g~~~~~~~~~--g~t~L~~   77 (238)
                      .++.+-.||+..++++|+|+-.  ...+    .+-.+.+-.|....+.+..    .+++.+...-.-.|..  -..-|..
T Consensus        76 ~q~LFElAC~~qkydiV~WI~q--nL~i----~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~  149 (192)
T PF03158_consen   76 NQELFELACEEQKYDIVKWIGQ--NLHI----YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEK  149 (192)
T ss_pred             HHHHHHHHHHHccccHHHHHhh--ccCC----CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHH
Confidence            4566778999999999998732  2222    3445677888888877663    2223332111011100  1134778


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHh
Q 041573           78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR  125 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~  125 (238)
                      |+..|....+--.+++|.+++.      ++|..|+.+++..++.+++.
T Consensus       150 a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  150 AAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            9999999999999999998874      89999999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.92  E-value=0.34  Score=37.60  Aligned_cols=91  Identities=11%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCC----CCcHHHHHHHc--CCHHHHHHHHHCC-CCcCcc---ccCCchH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKH----SRTPLHLAAWS--GQTEVVSYLCKNK-ADVGAA---AMDDMSA   74 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~----g~t~L~~A~~~--g~~~~~~~Ll~~g-~~~~~~---~~~g~t~   74 (238)
                      .++|.+|+..+.-+++..||....  .-..|.-    +.--+-|+...  .+..+++++|.+| +++|..   ...|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            457778888888888876765433  2223321    22234444433  4778999999997 556543   3569999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCc
Q 041573           75 IHFASQKGHLEVVRTLVSSGVSI   97 (238)
Q Consensus        75 L~~A~~~~~~~~v~~Ll~~g~~~   97 (238)
                      |--|..+++.+|+.+||++|+..
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.73  E-value=0.3  Score=31.14  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=19.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHH
Q 041573           42 LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS   92 (238)
Q Consensus        42 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   92 (238)
                      +.+|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|++
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHH
Confidence            44444444444444444333 111      233444444444444444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.56  E-value=0.39  Score=30.60  Aligned_cols=48  Identities=23%  Similarity=0.284  Sum_probs=39.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN   60 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   60 (238)
                      ...+..|+..|+.++++.++.....+        ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            46789999999999999776433221        3469999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-28
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-27
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-26
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-26
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-26
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-25
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-25
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-25
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-25
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-24
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-24
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-24
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-24
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-24
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-24
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-23
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-23
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-23
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-23
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-23
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-22
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-22
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-22
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-22
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-19
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-18
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-17
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-17
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-13
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-15
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-15
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-15
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-15
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-15
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-15
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-15
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-15
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-14
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-14
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-13
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-12
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-12
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-11
1uoh_A	226	Human Gankyrin Length = 226		4e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-11
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-11
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-10
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-09
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		7e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-06
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		2e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		7e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		5e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		6e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		7e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		7e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-04

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 90/147 (61%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN++DK   TPLHLAA  G  E+V  L K  ADV A   D
Sbjct: 9   AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+++GHLE+V  L+ +G  + A  + G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
            A+ K GKTP DLA    NE+I   L+
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQ 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+V+ LL+ GA + AK K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKL 178
            TPL LA  E     +E   ++    ++N K+K G +   L
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHL 107

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN++DK   TPLHLAA  G  E+V  L K  ADV A   D
Sbjct: 9   AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+++GHLE+V  L+ +G  + A  + G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 131 TAKTKAGKTPLDLARNEEIRSFLEEWEQSS 160
            A+ K GKTP DLA  E      E  ++++
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 16/142 (11%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+V+ LL+ GA + AK K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLG-------------DSGVE 184
            TPL LA  E     +E   ++    ++N K+K G +   L               +G +
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 185 VSASSPDGKRDENLK-RKGDED 205
           V+A    GK   +L  R+G ED
Sbjct: 127 VNAQDKFGKTPFDLAIREGHED 148

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AA +G+   V+  LI N   VN+ D   RTPLH AA  G  E+V  L    ADV A   D
Sbjct: 11  AAENGNKDRVKD-LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H+A+++GH E+V+ L+S G  + A    G  PLHYA +  H E+VK L+ KGA +
Sbjct: 70  GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
                 G+TPLDLAR   NEEI   LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAAW G  E+V  L K+ ADV A   D
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A    GL PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN++DK   TPLHLAA  G  E+V  L K  ADV A   D
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+++GHLE+V  L+ +G  + A  + G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 80  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
            A+ K GKT  D++    NE++   L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+V+ LL+ GA + AK K G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 138 KTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKL 178
            TPL LA  E     +E   ++    ++N K+K G +   L
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHL 119

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AA +G+   V+  LI N   VN+ D   RTPLH AA +G  EVV  L    ADV A   D
Sbjct: 11  AAENGNKDRVKD-LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A++ GH EVV+ L+S G  + A    G  PLH+A +  H E+VK L+ KGA +
Sbjct: 70  GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
                 G+TPLDLAR   NEE+   LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+RD    TPLHLAA  G  E+V  L KN ADV A    
Sbjct: 21  AARAGQDDEVR-ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
            ++ +H A+++GHLE+V  L+ +G  + A    G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 80  GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA +G  E+V  L KN ADV A+ + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
            ++ +H A+  GHLE+V  L+  G  + A    G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 80  GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
            A+ K GKT  D++    NE++   L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA+ G  E+V  L KN ADV A    
Sbjct: 21  AARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
            ++ +H A+ +GHLEVV  L+ +G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D   +TPLHLAA  G  E+V  L K+ ADV AA   
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+ +G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEEW 156
            A+ K GKT  D++    NE++   L++ 
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA+SG  E+V  L K+ ADV A+ + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+ +G  + A    G+ PLH A +  +LE+V+ LL+ GA +
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D +  TPLHLAA  G  E+V  L KN ADV A    
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+++GHLE+V  L+  G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
            A+ K GKT  D++    NE++   L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AA +G+   V+ +L  N    N+ D   RTPLH AA +G  E+V  L    AD  A   D
Sbjct: 11  AAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H+A++ GH E+V+ L+S G    A    G  PLHYA +  H E+VK LL KGA  
Sbjct: 70  GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
                 G+TPLDLAR   NEEI   LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ ILI+N   VN+ D    TPLHLAA SG  E+V  L K+ ADV AA + 
Sbjct: 21  AARAGQDDEVR-ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA 144
            A+ K GKT  D++
Sbjct: 140 NAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A     ++ +H A+  GHLE+V  L+  G  + A    G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE---EIRSFLEEWEQSSK 161
             PLH A    HLE+V+ LL+ GA + A    G TPL LA +E   EI   L ++     
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY----- 135
Query: 162 KPNLNGKEKAGES 174
             ++N ++K G++
Sbjct: 136 GADVNAQDKFGKT 148

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA++G  E+V  L KN ADV A    
Sbjct: 21  AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
            M+ +  A+  GHLE+V  L+ +G  + A   +G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N    N+ D + RTPLH+AA  G  E+V  L +N ADV A   +
Sbjct: 9   AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A    G+ PL+ A    HLE+V+ LL+ GA +
Sbjct: 68  GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLE 154
            A+ K GKT  D++    NE++   L+
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AA +G+   V+ +L  N   VN+ D   +TPLHLAA +G  EVV  L    AD  A   D
Sbjct: 11  AAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A++ GH EVV+ L+S G    A    G  PLH A +  H E+VK LL +GA  
Sbjct: 70  GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
                 G+TPLDLAR   NEE+   LE
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA+ G  E+V  L KN ADV A    
Sbjct: 21  AARAGRDDEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+ +G  + A    G+ PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLARN 146
            A+ K GKT  D++ N
Sbjct: 140 NAQDKFGKTAFDISIN 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%)
Query: 23  ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
           IL++N   VN+ D +  TPLHLAA +GQ E+V  L KN ADV A+    ++ +H A+  G
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 83  HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD 142
           HLE+V  L+  G  + A  R G  PLH A     LE+V+ LL+ GA + A+   G T  D
Sbjct: 84  HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
Query: 143 LARNE 147
           ++ N+
Sbjct: 144 ISINQ 148

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHL   +G  E++  L K  ADV A+   
Sbjct: 21  AARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+ +GHLE+V  L+  G  + A   +G  PLH A +  HLE+V+ LL+ GA +
Sbjct: 80  GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA +G  E+V  L K  ADV A    
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A   +G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N    LH AAR+G L+ V+ +L+     VN++DK+ RTPLHLAA +G  EVV  L +  A
Sbjct: 1   NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           DV A   +  + +H A++ GHLEVV+ L+ +G  + A  + G  PLH A +  HLE+VK 
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 123 LLRKGA 128
           LL  GA
Sbjct: 120 LLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 38  SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
            RTPLHLAA +G  EVV  L +  ADV A   +  + +H A++ GHLEVV+ L+ +G  +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98  KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL-ARN---EEIRSFL 153
            A  + G  PLH A +  HLE+VK LL  GA + AK K G+TPL L ARN   E ++  L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 154 E 154
           E
Sbjct: 122 E 122

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA  G  E+V  L K+ ADV A  + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N   VN+ D    TPLHLAA  G  E+V  L K+ ADV A  + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
             + +H A+  GHLE+V  L+  G  + A    G  PLH A    HLE+V+ LL+ GA +
Sbjct: 80  GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 131 TAKTKAGKTPLDLA---RNEEIRSFLEE 155
            A+ K GKT  D++    NE++   L++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+  G L  V+++L     S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct: 18  LHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A DD + +H A++ GH  +V+ L+ +  +    T  G  PLH A +  H+E V  LL K 
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK 168
           AS    TK G TPL +A         E   +    PN  GK
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 72  MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
           ++ +H AS  GHL +V+ L+  G S      K   PLH A +  H E+ KYLL+  A + 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 132 AKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNL 165
           AK K  +TPL  A      + ++   +++  PNL
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 1   MGNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSY 56
           MGN E   +L  AA++GD++ V+ +      SVN RD   R  TPLH AA   +  VV Y
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 57  LCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
           L ++ ADV A     +  +H A   GH EV   LV  G  +         PLH A     
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 117 LELVKYLLRKGASLTAKTKAGKTPLDLARN 146
            E+ K LL+ GA  T K + G TPLDL ++
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLDLVKD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 1   MGNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSY 56
           +GN E   +L  AA++GD++ V+ +      SVN RD   R  TPLH AA   +  VV Y
Sbjct: 7   LGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 57  LCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
           L ++ ADV A     +  +H A   GH EV   LV  G  +         PLH A     
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 117 LELVKYLLRKGASLTAKTKAGKTPLDLARN 146
            E+ K LL+ GA  T K + G TPLDL ++
Sbjct: 125 YEICKLLLQHGADPTKKNRDGNTPLDLVKD 154

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 2   GNRE--EELHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWSGQTEVVSYL 57
           GN E   +L  AA++GD++ V+ +      SVN RD   R  TPLH AA   +  VV YL
Sbjct: 6   GNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 63
Query: 58  CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL 117
            ++ ADV A     +  +H A   GH EV   LV  G  +         PLH A      
Sbjct: 64  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 118 ELVKYLLRKGASLTAKTKAGKTPLDLARN 146
           E+ K LL+ GA  T K + G TPLDL ++
Sbjct: 124 EICKLLLQHGADPTKKNRDGNTPLDLVKD 152

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A   D ++ +H A+Q GHLE+V  L+  G  + A    G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
           + PLH A    HLE+V+ LL+ GA + A+ K GKT  D++    NE++   L++ 
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 56/91 (61%)
Query: 38  SRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
            RTPLHLAA +G  EVV  L +  ADV A   +  + +H A++ GHLEVV+ L+ +G  +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98  KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
            A  + G  PLH A +  HLE+VK LL  GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 73  SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
           + +H A++ GHLEVV+ L+ +G  + A  + G  PLH A +  HLE+VK LL  GA + A
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 KTKAGKTPLDL-ARN---EEIRSFLE 154
           K K G+TPL L ARN   E ++  LE
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +N  D+   TPL  AA  GQ  VV +L +N AD         SA+  A  KG+ ++V+ L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
           +  GV +      G  PL YAV G+H++ VK LL  GA  T +T +G   +DLA     R
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 151 S 151
           S
Sbjct: 149 S 149

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +N  D+   TPL  AA  GQ  VV +L +N AD         SA+  A  KG+ ++V+ L
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
           +  GV +      G  PL YAV G+H++ VK LL  GA  T +T +G   +DLA     R
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 151 S 151
           S
Sbjct: 165 S 165

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +N  D+   TPL  AA  GQ  VV +L +N AD         SA+  A  KG+ ++V+ L
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
           +  GV +      G  PL YAV G+H++ VK LL  GA  T +T +G   +DLA     R
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 151 S 151
           S
Sbjct: 147 S 147

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H  A  G+L  ++  L      VN  D+   TPL  A+  G+ E V +L +  AD    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A +  SA+  AS  G+ ++V  L+   V I      G  PL YAV+G+H++ V+ LL +G
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 128 ASLTAKTKAGKTPLDLA 144
           A LT +  +G TP+DLA
Sbjct: 126 ADLTTEADSGYTPMDLA 142

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 72/137 (52%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H  A  G+L  ++  L      VN  D+   TPL  A+  G+ E V +L +  AD    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A +  SA+  AS  G+ ++V  L+   V I      G  PL YAV G+H++ V+ LL +G
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 128 ASLTAKTKAGKTPLDLA 144
           A LT +  +G TP+DLA
Sbjct: 126 ADLTTEADSGYTPMDLA 142

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A      + +H A+  GHLE+V  L+ +G  + A    G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
             PLH A    HLE+V+ LL+ GA + A+ K GKT  D++    NE++   L++
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA  G    +  +L+ +  +  +R+     PLHLA   G  +VV  L  + A     
Sbjct: 90  LHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +   + + +A   GH E+V  L+  G SI A   KG   LH AV   H+ +V+ LL  G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 128 ASLTAKTKAGKTPLDLA-RNEEIRSFLE 154
           AS+    K  +T +D A +N +I   L+
Sbjct: 209 ASVQVLNKRQRTAVDCAEQNSKIMELLQ 236

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
           A  +GQ + V  L  N ADV A  MDD  ++ +H A+++GHLE+V  L+  G  + A   
Sbjct: 21  ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
            G  PLH A    HLE+V+ LL  GA + A+ K GKT  D++    NE++   L++
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
           A  +GQ + V  L  N ADV A  MDD  ++ +H A+++GHLE+V  L+  G  + A   
Sbjct: 21  ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
            G  PLH A    HLE+V+ LL  GA + A+ K GKT  D++    NE++   L++
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 4   REEELHAAARSGDLKAVQSILISNPLSVNSR--DKHSRTPLHLAAWSGQTEVVSYLCKNK 61
           +++EL  AARSG+ + + ++L   PL+VN    D    TPLHLAA   +  +V  L ++ 
Sbjct: 24  KKDELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
           ADV A     +  +H A   GH EV   L+  G  + A       PLH A   + +E+  
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 122 YLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
            LL  GA  T     GK+ +D+A   E+R  L
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDD--MSAIHFASQKGHLEVVRTLVSSGVSIKACTR 102
           A  +GQ + V  L  N ADV A  MDD  ++ +H A+++GHLE+V  L+  G  + A   
Sbjct: 21  ATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
            G  PLH A    HLE+V+ LL  GA + A+ K GKT  D++    NE++   L++
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A     ++ +H A+   HLE+V  L+ +G  + A    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
             PLH      HLE+V+ LL+ GA + A+ K GKT  D++    NE++   L++ 
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A     ++ ++ A+  GHLE+V  L+ +G  + A    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
             PLH A    HLE+ + LL+ GA + A+ K GKT  D++    NE++   L++ 
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
           AA +GQ + V  L  N ADV A      + +H A+   HLE+V  L+  G  + A    G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEW 156
             PLH A    HLE+V+ LL+ GA + A+ K GKT  D++    NE++   L++ 
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA +G  + V+++L+     VN+ +++  TPLH AA   + E+   L +  A+  A 
Sbjct: 77  LHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              D +A+H A+ KG+L++V  L+    S      +G  PLH A     +E  K+L+ +G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 128 ASLTAKTKAGKTPLDLAR 145
           AS+  + K  KTPL +A+
Sbjct: 196 ASIYIENKEEKTPLQVAK 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
           D  +A+H+A   GH E+V  L+  GV +      G +PLH A      E+VK LL KGA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 130 LTAKTKAGKTPLDLA 144
           + A  + G TPL  A
Sbjct: 99  VNAVNQNGCTPLHYA 113

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA +G  + V+++L+     VN+ +++  TPLH AA   + E+   L +  A+  A 
Sbjct: 77  LHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              D +A+H A+ KG+L++V  L+    S      +G  PLH A     +E  K+L+ +G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 128 ASLTAKTKAGKTPLDLAR 145
           AS+  + K  KTPL +A+
Sbjct: 196 ASIYIENKEEKTPLQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
           D  +A+H+A   GH E+V  L+  GV +      G +PLH A      E+VK LL KGA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 130 LTAKTKAGKTPLDLA 144
           + A  + G TPL  A
Sbjct: 99  VNAVNQNGCTPLHYA 113

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%)
Query: 36  KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGV 95
           K   TPLH AA +G  E V  L    ADV A + D  + +H A++ GH E+V+ L++ G 
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 96  SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
            + A ++ G  P H A +  H E+VK L  KGA + A++
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 101 TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           ++ G  PLH A +  H E VK LL KGA + A++K G TPL LA
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N+   LHAAA +G +  +  +L+    ++++  +  RTPL  AA +   E V YL K  A
Sbjct: 10  NKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVK 121
            V     +  + +H A++KGH EVV+ L+S+G + +      G  P+ +A +  H++LVK
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 122 YLLRKGASLTAK 133
            LL KG+ +  +
Sbjct: 129 LLLSKGSDINIR 140

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 73  SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
           S +H A++ GH+++   LV +G +I  C+     PL  A + +HLE VKYL++ GA +  
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 133 KTKAGKTPLDLA 144
           K   G T L LA
Sbjct: 73  KDAEGSTCLHLA 84

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           +++    R G+  AV+  L +    +N  D H  +PLH A   G++ VV  L    A + 
Sbjct: 2   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                D + +H A+  GH ++V+ L+     I A    G  PLHYA      ++ + L+ 
Sbjct: 62  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
            GA ++   K G+ P+D A+   +R  L E
Sbjct: 122 NGALVSICNKYGEMPVDKAK-APLRELLRE 150

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           +++    R G+  AV+  L +    +N  D H  +PLH A   G++ VV  L    A + 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                D + +H A+  GH ++V+ L+     I A    G  PLHYA      ++ + L+ 
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
            GA ++   K G+ P+D A+   +R  L E
Sbjct: 127 NGALVSICNKYGEMPVDKAK-APLRELLRE 155

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 56/96 (58%)
Query: 48  SGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP 107
           SG TE V  L +  AD+  A +D ++A+H A    ++++V+ LV +G +I     +G  P
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 108 LHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL 143
           LH A    +L++ +YL+ +GA + A    G TPLD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A  +G  + V+  L+   + VN +D    +PLH+AA +G+ E+V  L    A V A 
Sbjct: 45  LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  + +H+A+ K   E+   L+  G +  A        +H A    +L+++  LL   
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
           AS   +   G TPL LA +EE
Sbjct: 164 ASTNIQDTEGNTPLHLACDEE 184

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A  +G  + V+  L+   + VN +D    +PLH+AA +G+ E+V  L    A V A 
Sbjct: 44  LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  + +H+A+ K   E+   L+  G +  A        +H A    +L+++  LL   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Query: 128 ASLTAKTKAGKTPLDLARNEE 148
           AS   +   G TPL LA +EE
Sbjct: 163 ASTNIQDTEGNTPLHLACDEE 183

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
           T LH+A+  G    V YL +N +D         + +H A   GHL+VV  L+     +  
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
              +  +PLH A +  H+++VK LL  GAS  A    G  P+D   +E ++S L
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   VQ +L S P  +  +D+  R PLH +      E+ S+L     +V   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68  AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
              D    +  H A   G+LEVV++L    +   +   T +G+  LH AV     E+ ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
           L+  GAS+  K K  + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   VQ +L S P  +  +D+  R PLH +      E+ S+L     +V   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68  AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
              D    +  H A   G+LEVV++L    +   +   T +G+  LH AV     E+ ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
           L+  GAS+  K K  + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   VQ +L S P  +  +D+  R PLH +      E+ S+L     +V   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 68  AMDD---MSAIHFASQKGHLEVVRTLVSSGV--SIKACTRKGLNPLHYAVQGSHLELVKY 122
              D    +  H A   G+LEVV++L    +   +   T +G+  LH AV     E+ ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 123 LLRKGASLTAKTKAGKTPL 141
           L+  GAS+  K K  + PL
Sbjct: 126 LIENGASVRIKDKFNQIPL 144

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
           AAR+G    V+ IL++N     + D    +PLHLAA  G       L +      A    
Sbjct: 9   AARAGQDDEVR-ILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
           D + +H A+ +GH  +V  L+  G  + A     +  LH+A + +H E+V+ L++ GA +
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 131 TAKTKAGKTPLDLAR---NEEIRSFLE 154
             ++K  KT  D++    NE++   L+
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEILQ 153

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A   G L  V+ IL+ +   VN       TPL  A  SG  + V+ L ++ A V   
Sbjct: 96  LHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSI-------------------KACTRKGL--- 105
           + D  S IH A+++GH+E V +L++ G +I                   +AC +K L   
Sbjct: 155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 106 ----------NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE--IRSFL 153
                     +PLH  V+ +  EL   L+  GA   AK   GK P++L   E    + FL
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFL 273
Query: 154 EEWEQSSKKP 163
           E    S  KP
Sbjct: 274 EREGASLPKP 283

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+V+ LL+ GA + A+ K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 138 KTPLDLA---RNEEIRSFLE 154
           KT  D++    NE++   L+
Sbjct: 69  KTAFDISIDNGNEDLAEILQ 88

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+VK LL  GA + A+ K G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 138 KTPLDLA---RNEEIRSFLE 154
           KT  D++    NE++   L+
Sbjct: 73  KTAFDISIDNGNEDLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 78  ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
           A++ G  + VR L+++G  + A  + G  PLH A +  HLE+VK LL  GA + A+ K G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 138 KTPLDLA---RNEEIRSFLE 154
           KT  D++    NE++   L+
Sbjct: 91  KTAFDISIDNGNEDLAEILQ 110

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 8   LHAAARSGDLKAVQSILI--SNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH A R G L  V  ++   ++P  +   D    + +HLAA  G T +V+YL     DV 
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 66  AAAMDDMSAIHFASQKGH-LEVVRTLVSSGVSIKACTRKGLNP-LHYAVQGSHLELVKYL 123
               + M+ + +A+ + H ++  R L++  VS+    +   N  LH+AV   +  ++  L
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 124 LRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPN 164
           L  GA++ A+   G++ LDLA   +N  + + L+E  Q+    N
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           N RD ++RTPL +A   G    +  L +N   +    ++  +A+ +A +   L +   L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA----RNE 147
           S G ++      G  PL +++   + E+  +LL  GA++  +   G+TPL +A    R+E
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 148 EIRSFLE 154
            ++  LE
Sbjct: 149 IVKKLLE 155

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A   G L  V+ IL+ +   VN       TPL  A  SG  + V+ L ++ A V   
Sbjct: 40  LHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSI-------------------KACTRKGL--- 105
           + D  S IH A+++GH+E V +L++ G +I                   +AC +K L   
Sbjct: 99  S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 106 ----------NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE--IRSFL 153
                     +PLH   + +  EL   L+  GA   AK   GK P++L   E    + FL
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFL 217
Query: 154 E 154
           E
Sbjct: 218 E 218

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 52  EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
           EV  Y+ K + DV          +H+A+  G LE++  L+  G  I A  +  + PL  A
Sbjct: 17  EVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Query: 112 VQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
           V   H+  VK LL KGA  T K   G T L+   N+ I++ L+
Sbjct: 76  VYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 34  RDKHSRTPLHL---AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           R K +  PL L   ++  G+ ++V  +     D      + ++A+H A   GH E+V+ L
Sbjct: 30  RVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT 134
           V  GV++ A    G  PLH A   +++++ K+L+  GA++ A T
Sbjct: 90  VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 52  EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA 111
           EV  Y+ K + DV          +H+A+  G LE++  L+  G  I A  +  + PL  A
Sbjct: 22  EVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 112 VQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
           V   H+  VK LL KGA  T K   G T  +   N+ I++ L+
Sbjct: 81  VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV------ 64
           AA +G +K ++ + +S    VN  D +  T    AA  G+ + + +L K  A+V      
Sbjct: 79  AAIAGSVKLLK-LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 65  ----------GAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV- 112
                     GA A+ D      A++KGH+EV++ L+   G  + AC   G N L +A+ 
Sbjct: 138 KEDQERLRKGGATALMD------AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 113 --QGSHLELVKYLLRK-GASLTAKTKAGKTPLDLA 144
               S +E + +LL   GA +  + + GKTPL LA
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           + L  AA  GD++ V+ +L    +  ++ ++  +T L +  + G T +   L K  A   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                  S +H A++ G L+ ++ LV  G  +      G  P+H AVQ  H  +V +L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 126 KGASLTAKTKAGKTPLDLA 144
           + + L  +   G TPL+LA
Sbjct: 123 E-SDLHRRDARGLTPLELA 140

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 49  GQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
           G+ ++V  +     D      + ++A+H A   GH E+V+ LV  GV++ A    G  PL
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 109 HYAVQGSHLELVKYLLRKGASLTAKT 134
           H A   +++++ K+L+  GA++ A T
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV------ 64
           AA +G +K ++ + +S    VN  D +  T    AA  G+ + + +L K  A+V      
Sbjct: 99  AAIAGSVKLLK-LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 65  ----------GAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV- 112
                     GA A+ D      A++KGH+EV++ L+   G  + AC   G N L +A+ 
Sbjct: 158 KEDQERLRKGGATALMD------AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 211
Query: 113 --QGSHLELVKY-LLRKGASLTAKTKAGKTPLDLA 144
               S +E + + LL  GA +  + + GKTPL LA
Sbjct: 212 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           + L  AA  GD++ V+ +L    +  ++ ++  +T L +  + G T +   L K  A   
Sbjct: 10  DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 68
Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                  S +H A++ G L+ ++ LV  G  +      G  P+H AVQ  H  +V +L  
Sbjct: 69  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 126 KGASLTAKTKAGKTPLDLA 144
           + + L  +   G TPL+LA
Sbjct: 129 E-SDLHRRDARGLTPLELA 146

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 4   REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA- 62
           R+  LH A  +  L +V  +L++   S  + D+H +T  HLA        +  L  + A 
Sbjct: 46  RQTPLHLAVIT-TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 63  ---DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC-TRKGLNPLHYAVQGSHLE 118
              D+ A   D ++A+H A      E V+ L+  G  I A   + G +PL +AV+ + L 
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 119 LVKYLLRKGASLTAKTKAGKTPL 141
           +V+ LL+ GA++ A+  +G + L
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSAL 187

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           NS+D   RTPLH A  +    V   L +N+A ++ A   D  + +  A++     +V  L
Sbjct: 78  NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
           +++   I A    G   LH+A   ++ E V  LL   A+  A+    +TPL LA  E
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 194

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           E++H AAR G    V+  LI   +S   +++   T LHLA   G  +   YL    A VG
Sbjct: 22  EKIHVAARKGQTDEVRR-LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVG 76
Query: 66  A--AAMDDMSAIHFASQKGHLEVVRTLVSS-----------------------GVSIKAC 100
              +       IH A      ++V  LV                         G  +K C
Sbjct: 77  EVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHC 136
Query: 101 TRKGLNPLHYAVQ--GSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEE 148
             KG   LH+ V     +LE +K L++ GAS TAK KA +TPL  A   RN E
Sbjct: 137 --KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGA 66
           L+ A  + D++  ++ LI     +N ++  S +P   A   G+TE+++Y+ K+   D+  
Sbjct: 43  LNIAVHNNDIEIAKA-LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAV---QGSHL--ELV 120
                 +A+  A++KGH++ V+ L+  G   I      G   L  AV   +G+ L  ++V
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161
Query: 121 KYLLRKGASLTAKTKAGKTPLDLARNE---EIRSFLEEW 156
           K L+  GA  + K  +G+T +D A  +   EI   L ++
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL +AA  GDL+ + S+L +N  +VN+++   RT L +    G  E+   L    A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + IH A++ G L+ ++TL+ +   +     +G  PLH A +  HL +V++L++ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
            AS +  +   G T  DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL +AA  GDL+ + S+L +N  +VN+++   RT L +    G  E+   L    A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + IH A++ G L+ ++TL+     +     +G  PLH A +  HL +V++L++ 
Sbjct: 66  KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
            AS +  +   G T  DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL +AA  GDL+ + S+L +N  +VN+++   RT L +    G  E+   L    A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + IH A++ G L+ ++TL+     +     +G  PLH A +  HL +V++L++ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
            AS +  +   G T  DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL +AA  GDL+ + S+L +N  +VN+++   RT L +    G  E+   L    A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + IH A++ G L+ ++TL+     +     +G  PLH A +  HL +V++L++ 
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
            AS +  +   G T  DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
           E  LH AAR     A + +L ++    N +D   RTPLH A  +    V   L +N+A D
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
           + A   D  + +  A++     ++  L++S   + A    G + LH+A   ++++    L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
           L+ GA+   +    +TPL LA  E
Sbjct: 177 LKNGANKDMQNNREETPLFLAARE 200

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
           E  LH AAR     A + +L ++    N +D   RTPLH A  +    V   L +N+A D
Sbjct: 59  ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
           + A   D  + +  A++     ++  L++S   + A    G + LH+A   ++++    L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
           L+ GA+   +    +TPL LA  E
Sbjct: 178 LKNGANKDMQNNREETPLFLAARE 201

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
           E  LH AAR     A + +L ++    N +D   RTPLH A  +    V   L +N+A D
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
           + A   D  + +  A++     ++  L++S   + A    G + LH+A   ++++    L
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
           L+ GA+   +    +TPL LA  E
Sbjct: 145 LKNGANKDMQNNREETPLFLAARE 168

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +N ++   +TPLHLA  + Q E+   L     D         + +H A ++G L  V  L
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 91  VSSGVS------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA-GKTPLDL 143
             S  +      +KA    G   LH A    +L +V+ L+  GA + A+    G+T L L
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 144 A---RNEEIRSFL 153
           A   +N ++ S L
Sbjct: 158 AVDLQNPDLVSLL 170

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           EL +AA  GDL+ + S+L +N  +VN+++   RT L +    G  E+   L    A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + IH A++ G L+ ++TL+     +     +G  PLH A +  HL +V++L++ 
Sbjct: 66  KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 127 GAS-LTAKTKAGKTPLDLAR 145
            AS +  +   G T  DLAR
Sbjct: 126 TASNVGHRNHKGDTACDLAR 145

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 71  DMSAIHFASQ---KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           D +A+H A +   +  L +V  LV +  ++   T KG   LHY     + E +K LLR  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 128 ASLTAKTKAGKTPLDLAR 145
           AS+    ++G+TPLD+A+
Sbjct: 229 ASIEIANESGETPLDIAK 246

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +N ++   +TPLHLA  + Q E+   L     D         + +H A ++G L  V  L
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 91  VSSGVS------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA-GKTPLDL 143
             S  +      +KA    G   LH A    +L +V+ L+  GA + A+    G+T L L
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 144 A---RNEEIRSFL 153
           A   +N ++ S L
Sbjct: 155 AVDLQNPDLVSLL 167

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           E  L  AA+  D++A+  +L      V+ R     T LH+AA     E    L +   ++
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 65  GAAAM-----DDMSAIHFASQKGHLEVVRTLVSSGVSIKA-------------CTRKGLN 106
               M     +  +A+H A    ++ +VR L++ G S+ A                 G +
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF 152
           PL +A      E+V+ L+  GA + A+   G T L +   +  ++F
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-D 63
           E  LH AAR     A + +L ++      +D   RTPLH A  +    V   L +N+A D
Sbjct: 23  ETALHLAARYSRSDAAKRLLEASA-DAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
           + A   D  + +  A++     ++  L++S   + A    G + LH+A   ++++    L
Sbjct: 82  LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 124 LRKGASLTAKTKAGKTPLDLARNE 147
           L+ GA+   +    +TPL LA  E
Sbjct: 142 LKNGANKDMQNNKEETPLFLAARE 165

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 51/174 (29%)
Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ---------- 80
           VN+ D    TPL LA  + +  +V+YL K  AD       + SA+H A+           
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 81  ------KGHLEVV-----------------------RTLVSSG--VSIKACTRK------ 103
                 KG +E +                       + LV  G  V      RK      
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 104 GLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLDLARNE---EIRSFL 153
           G   LHYA Q S+  +VKYL+  KG++   + + GKTP+ LA  E   E+  +L
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           N +D   RTPLH A  +    V   L +N+A D+ A   D  + +  A++     ++  L
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
           ++S   + A    G + LH+A   ++++    LL+ GA+   +    +TPL LA  E
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 200

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK- 98
           TP   AA     + +S L +++ DV A   +  +A+ F +  G  + VR L  +G  +  
Sbjct: 47  TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
              R GL  LH A      E+V+ L+  GA +  + + G T L+LAR
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 41  PLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKA 99
           PLH AA  G    +     N+  V        +A+++A   GH ++V  L +   + +  
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
             + G   LH A    + ++V+ LL KGA    +    K   D A N    S L++
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK- 98
           TP   AA     + +S L +++ DV A   +  +A+ F +  G  + VR L  +G  +  
Sbjct: 46  TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
              R GL  LH A      E+V+ L+  GA +  + + G T L+LAR
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSI-KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
           D  + +H A      E+VR L  +G  + K     G  PLH AV+     +++ LL+ GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 129 SLTAKTKAGKTPL 141
             TA+   G+TPL
Sbjct: 217 DPTARMYGGRTPL 229

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSI-KACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
           D  + +H A      E+VR L  +G  + K     G  PLH AV+     +++ LL+ GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 129 SLTAKTKAGKTPL 141
             TA+   G+TPL
Sbjct: 217 DPTARMYGGRTPL 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-47
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-47
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-45
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-44
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-42
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-41
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-41
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-38
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-38
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-37
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-38
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-38
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-36
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
2rfa_A	232	Transient receptor potential cation channel subfa	3e-36
2rfa_A	232	Transient receptor potential cation channel subfa	4e-29
2rfa_A	232	Transient receptor potential cation channel subfa	1e-25
2rfa_A	232	Transient receptor potential cation channel subfa	7e-22
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-31
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-28
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-23
2etb_A	256	Transient receptor potential cation channel subfam	7e-27
2etb_A	256	Transient receptor potential cation channel subfam	1e-26
2etb_A	256	Transient receptor potential cation channel subfam	3e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-26
2pnn_A	273	Transient receptor potential cation channel subfa	7e-25
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	1e-16
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-11

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  153 bits (389), Expect = 2e-47
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H  A  G++  +    I     +N  D+   TPL  AA  GQ  VV +L +N AD    
Sbjct: 7   VHQLAAQGEMLYLA-TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                SA+  A  KG+ ++V+ L+  GV +      G  PL YAV G+H++ VK LL  G
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 128 ASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEK 170
           A  T +T +G   +DLA       ++  +E     S    L    K
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIE-----SHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (302), Expect = 3e-34
 Identities = 21/106 (19%), Positives = 43/106 (40%)

Query: 39  RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
              +H  A  G+   ++   + +  +     +  + + +A+  G + VV  L+ +G   +
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
              +   + L  A    + ++VK LL  G  +      G TPL  A
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.9 bits (149), Expect = 7e-12
 Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A     +K V+ +L+ +              + LA   G   V   +  +   +   
Sbjct: 106 LLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164

Query: 68  AMD 70
             +
Sbjct: 165 IKE 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  153 bits (389), Expect = 3e-47
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H  A  G+L  ++  L      VN  D+   TPL  A+  G+ E V +L +  AD    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A +  SA+  AS  G+ ++V  L+   V I      G  PL YAV+G+H++ V+ LL +G
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

Query: 128 ASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGE 173
           A LT +  +G TP+DLA      +++  +E     +    L        
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIE-----NHILKLFQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  142 bits (360), Expect = 5e-43
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A+  G+++ V+  L+      +   K   + L LA+  G T++V  L +   D+   
Sbjct: 40  LIWASAFGEIETVR-FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  + + +A +  H++ V  L++ G  +      G  P+  AV   + ++ + +    
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 128 ASLTAKTKAGKTP 140
             L         P
Sbjct: 159 LKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (294), Expect = 5e-33
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 39  RTPLHLAAWSGQTEVVSYLCKNKAD-VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
              +H  A  G+ + +    +   + V        + + +AS  G +E VR L+  G   
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 98  KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
               ++  + L  A  G + ++V  LL +   +      G TPL  A
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.0 bits (209), Expect = 2e-20
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 71  DMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
           D  +IH  + +G L+ ++  +  G   +     +G  PL +A     +E V++LL  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 130 LTAKTKAGKTPLDLA 144
                K  ++ L LA
Sbjct: 62  PHILAKERESALSLA 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  149 bits (379), Expect = 1e-45
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +    R G+  AV+  L +    +N  D H  +PLH A   G++ VV  L    A +   
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              D + +H A+  GH ++V+ L+     I A    G  PLHYA      ++ + L+  G
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFLEE 155
           A ++   K G+ P+D A+    E +R   E+
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (280), Expect = 6e-31
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQKGHLEVVRTLVSS 93
                  +      G    V     N   D+        S +H+A ++G   VV  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           G  I    R    PLH A    H ++V+ LL+  A + A  + G  PL  A
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (393), Expect = 4e-45
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+ G  + V  +L+S   + N  +K   TPLHL A  G   V   L K+   V A 
Sbjct: 249 LHLAAQEGHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + +H AS  G++++V+ L+     + A T+ G +PLH A Q  H ++V  LL+ G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
           AS    +  G TPL +A+      +   L+    + +   +   +K   S
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLK--VVTDETSFVLVSDKHRMS 415

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  151 bits (385), Expect = 7e-44
 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+  G L  V+  L+    S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct: 18  LHVASFMGHLPIVK-NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A DD + +H A++ GH  +V+ L+ +  +    T  G  PLH A +  H+E V  LL K 
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 128 ASLTAKTKAGKTPLDLA 144
           AS    TK G TPL +A
Sbjct: 137 ASQACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (378), Expect = 8e-43
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+ G ++  + +L+      N+  K+  TPLH+A      ++V  L        + 
Sbjct: 150 LHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A +  + +H A+++  +EV R+L+  G S  A + +G+ PLH A Q  H E+V  LL K 
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 128 ASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
           A+     K+G TPL L     +  +   L           ++   + G +
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVL-----IKHGVMVDATTRMGYT 313

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (376), Expect = 1e-42
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AAR G    V+ +L+ N  + N       TPLH+AA  G  E V  L + +A     
Sbjct: 84  LHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + +H A++ G + V   L+       A  + GL PLH AV  ++L++VK LL +G
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 128 ASLTAKTKAGKTPLDLA 144
            S  +    G TPL +A
Sbjct: 203 GSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (371), Expect = 7e-42
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +L  V+ +L+    S +S   +  TPLH+AA   Q EV   L +      A 
Sbjct: 183 LHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           ++  ++ +H A+Q+GH E+V  L+S   +     + GL PLH   Q  H+ +   L++ G
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 128 ASLTAKTKAGKTPLDLA 144
             + A T+ G TPL +A
Sbjct: 302 VMVDATTRMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (370), Expect = 1e-41
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AAR G ++ V   L+    S     K   TPLH+AA  G+  V   L +  A   AA
Sbjct: 117 LHIAAREGHVETVL-ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             + ++ +H A    +L++V+ L+  G S  +    G  PLH A + + +E+ + LL+ G
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 128 ASLTAKTKAGKTPLDLA 144
            S  A++  G TPL LA
Sbjct: 236 GSANAESVQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  145 bits (368), Expect = 2e-41
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+   ++  +  L+    S N+      TPLHLAA  G  E+V+ L   +A+    
Sbjct: 216 LHIAAKQNQVEVAR-SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
               ++ +H  +Q+GH+ V   L+  GV + A TR G  PLH A    +++LVK+LL+  
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 128 ASLTAKTKAGKTPLDLA 144
           A + AKTK G +PL  A
Sbjct: 335 ADVNAKTKLGYSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (367), Expect = 3e-41
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AAR+G  +  +  L+ N   VN++ K  +TPLH AA  G T +V  L +N A+   A
Sbjct: 51  LHMAARAGHTEVAK-YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + +H A+++GH+E V  L+    S    T+KG  PLH A +   + + + LL + 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 128 ASLTAKTKAGKTPLDLA 144
           A   A  K G TPL +A
Sbjct: 170 AHPNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (337), Expect = 6e-37
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH  A+ G +     +LI + + V++  +   TPLH+A+  G  ++V +L +++ADV A 
Sbjct: 282 LHLVAQEGHVPVAD-VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR-- 125
                S +H A+Q+GH ++V  L+ +G S    +  G  PL  A +  ++ +   L    
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 126 -KGASLTAKTKAGKTPLDLAR 145
            + + +    K   +  +   
Sbjct: 401 DETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  126 bits (320), Expect = 2e-34
 Identities = 35/115 (30%), Positives = 56/115 (48%)

Query: 30  SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRT 89
           S     +   TPLH+A++ G   +V  L +  A    + +   + +H A++ GH EV + 
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 90  LVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           L+ +   + A  +    PLH A +  H  +VK LL   A+    T AG TPL +A
Sbjct: 66  LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 30/83 (36%), Positives = 41/83 (49%)

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
              G      ++ +H AS  GHL +V+ L+  G S      K   PLH A +  H E+ K
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 122 YLLRKGASLTAKTKAGKTPLDLA 144
           YLL+  A + AK K  +TPL  A
Sbjct: 65  YLLQNKAKVNAKAKDDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           S G+S       GL PLH A    HL +VK LL++GAS        +TPL +A
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 54

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (365), Expect = 7e-44
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA  GD++ V+ +L    +  ++ ++  +T L +  + G T +   L K  A     
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 64

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                S +H A++ G L+ ++ LV  G  +      G  P+H AVQ  H  +V +L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE 123

Query: 128 ASLTAKTKAGKTPLDLA 144
           + L  +   G TPL+LA
Sbjct: 124 SDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (282), Expect = 2e-31
 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L      G        L+    S N +D    +P+H AA +G  + +  L ++ ADV   
Sbjct: 40  LQVMMF-GSTAIAL-ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
                  IH A Q+GH  VV  L +    +     +GL PL  A+Q    +LV  L 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  103 bits (260), Expect = 4e-28
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 40  TPLHLAAWSGQTEVVSYLC-KNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
             L  AA  G  + V  L  +      A      +A+      G   +   L+  G S  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
                G +P+H A +   L+ +K L+  GA +      G  P+ LA
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.2 bits (207), Expect = 3e-20
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H AAR+G L  ++ +L+ +   VN  D     P+HLA   G T VVS+L   ++D+   
Sbjct: 72  VHDAARTGFLDTLK-VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRR 129

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVS 92
               ++ +  A Q+G  ++V  L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 103 KGLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLDLARN 146
           +  + L  A     ++ V+ LL R+     A  + GKT L +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF 45

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  148 bits (375), Expect = 4e-43
 Identities = 45/142 (31%), Positives = 71/142 (50%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
            +++EL  AARSG+ + + ++L    ++ ++ D    TPLHLAA   +  +V  L ++ A
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           DV A     +  +H A   GH EV   L+  G  + A       PLH A   + +E+   
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 123 LLRKGASLTAKTKAGKTPLDLA 144
           LL  GA  T     GK+ +D+A
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  135 bits (342), Expect = 2e-38
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG---QTEVVSYLCKNKADV 64
           L  AAR  DL  V+  L         + +   T LH A  S    + +V   L +  A+V
Sbjct: 182 LLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
                D M+ +H A+++ H +V+  L   G  + A    G   LH A    HL+  + LL
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300

Query: 125 RKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAG 172
             G+  +  +  G T   +  NE ++  L      S+   +   +   
Sbjct: 301 SYGSDPSIISLQGFTAAQMG-NEAVQQIL------SESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (318), Expect = 8e-35
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA    ++ VQ +L+ +   V+++DK    PLH A   G  EV   L K+ A V A 
Sbjct: 62  LHLAAGYNRVRIVQ-LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +   + +H A+ K  +EV   L+S G         G + +  A      E + Y  +  
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 128 ASLTA---------------------KTKAGKTPLDLA 144
           + L A                     + ++ +T L  A
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (295), Expect = 2e-31
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 8   LHAAARSG--DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH A  S     K V  +L+    +VN ++K   TPLH+AA     +V+  L K+ A + 
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           A      +A+H A+  GHL+  R L+S G      + +G             E V+ +L 
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILS 329

Query: 126 KGASLTAKTKAGKT 139
           +   +       + 
Sbjct: 330 ESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (293), Expect = 4e-31
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 9/155 (5%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
           L           ++ +  L  AA SG + ++++ L     +  A+     + +H A+   
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 83  HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLD 142
            + +V+ L+  G  + A  + GL PLH A    H E+ + LL+ GA + A      TPL 
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 143 LA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
            A      E+ S L      S   +       G+S
Sbjct: 130 EAASKNRVEVCSLL-----LSHGADPTLVNCHGKS 159

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  112 bits (283), Expect = 9e-30
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA    ++    +L+S+       + H ++ + +A      E ++Y  K  +     
Sbjct: 128 LHEAASKNRVEVCS-LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL---- 182

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH---LELVKYLL 124
                     A+++  L  V+  ++  +      +     LH AV   H    ++ + LL
Sbjct: 183 --------LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234

Query: 125 RKGASLTAKTKAGKTPLDLA 144
           RKGA++  K K   TPL +A
Sbjct: 235 RKGANVNEKNKDFMTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 5e-19
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 36  KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL-EVVRTLVSSG 94
           +  ++ L LA                A            +  A++ G+  +++  L    
Sbjct: 2   EFGKSALDLAD-------------PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           V+  A   +   PLH A   + + +V+ LL+ GA + AK K G  PL  A
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (361), Expect = 2e-42
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   VQ +L S P  +  +D+  R PLH +      E+ S+L     +V   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

Query: 68  AMDD---MSAIHFASQKGHLEVVRTLVS--SGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
              D    +  H A   G+LEVV++L        +   T +G+  LH AV     E+ ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125

Query: 123 LLRKGASLTAKTKAGKTPLDLA 144
           L+  GAS+  K K  + PL  A
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  141 bits (358), Expect = 6e-42
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLS--VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
            H A   G+L+ V+  L   PL   +N       T LHLA      EV  +L +N A V 
Sbjct: 76  FHIACSVGNLEVVK-SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVS-IKACTRKGLNPLHYAVQGSHLELVKYLL 124
                +   +H A+  G L+++  L   G S +    ++G  PL +A+   H +    L+
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194

Query: 125 RK-GASLTAKTKAGKTPLDLARNEEIRSFL 153
            K GA        G    D+A NE+++ F 
Sbjct: 195 EKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (260), Expect = 2e-27
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 39  RTPLHLAAWSGQT-EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
             PLH A    +  +V   L    + +     D    +H++      E+   L+S   ++
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 98  KA---CTRKGLNPLHYAVQGSHLELVKYLLRK--GASLTAKTKAGKTPLDLA 144
                    G  P H A    +LE+VK L  +     L   T  G T L LA
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (361), Expect = 3e-42
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LH AA+ G  + VQ  L+SN  + VN +D    TP+  A      ++V  L    +D+  
Sbjct: 81  LHLAAKKGHYEVVQ-YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
              ++   +H+A+  G +++   L+++   + A    G +PLH A + +  + V   L +
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199

Query: 127 GASLTAKTKAGKTPLDLA 144
            + +T K K G+TPL  A
Sbjct: 200 DSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  137 bits (347), Expect = 3e-40
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LHAAA +G +     +L+    ++++  +  RTPL  AA +   E V YL K  A V   
Sbjct: 15  LHAAAEAGHVDICH-MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
             +  + +H A++KGH EVV+ L+S+G + +      G  P+ +A +  H++LVK LL K
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 127 GASLTAKTKAGKTPLDLA 144
           G+ +  +       L  A
Sbjct: 134 GSDINIRDNEENICLHWA 151

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (310), Expect = 1e-34
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
                ++ R+PLH AA +G  ++   L +  A++   + D  + +  A++  HLE V+ L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAKTKAGKTPLDLA 144
           + +G  +     +G   LH A +  H E+V+YLL  G   +  +   G TP+  A
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (308), Expect = 2e-34
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +  A     +  V+ +L+S    +N RD      LH AA+SG  ++   L   K D+ A 
Sbjct: 115 MIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +   S +H A+++   + V   +S    +    ++G  PL  A   S +     + +  
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 128 A 128
            
Sbjct: 234 Q 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.8 bits (224), Expect = 4e-22
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
            +      +  S +H A++ GH+++   LV +G +I  C+     PL  A + +HLE VK
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 122 YLLRKGASLTAKTKAGKTPLDLA 144
           YL++ GA +  K   G T L LA
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLA 84

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 4e-10
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH AAR      V  + +S    V  ++K   TPL  A+ + Q      + K   D  
Sbjct: 181 LHIAARENRYDCVV-LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  139 bits (354), Expect = 5e-42
 Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR+G    V+ IL++N   VN+ D    TPLHLAA++G  E+V  L KN ADV A 
Sbjct: 18  LLEAARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
               M+ +  A+  GHLE+V  L+ +G  + A   +G  PLH A    HLE+V+ LL+ G
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 128 ASLTAKTKAGKTPLDLA 144
           A + A+ K GKT  D++
Sbjct: 137 ADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  118 bits (299), Expect = 7e-34
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA +G L+ V+ +L+ N   VN+ D    TPL LAA  G  E+V  L KN ADV A 
Sbjct: 51  LHLAAFNGHLEIVE-VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
            M+  + +H A+  GHLE+V  L+ +G  + A  + G      ++   + +L + L + 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (291), Expect = 1e-32
 Identities = 40/113 (35%), Positives = 56/113 (49%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           +         L  AA +G+ + V  L  N ADV A      + +H A+  GHLE+V  L+
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
            +G  + A    G+ PL  A    HLE+V+ LL+ GA + A    G TPL LA
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  140 bits (355), Expect = 3e-41
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +  A + G  +  +  L+     V   DK + T LH AA + + ++V Y     A V   
Sbjct: 13  IVKATQYGIYERCR-ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 68  AMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
             D   + +H+A+++GHL +V  L+  G        +G + +H A Q  H  +V YL+ K
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131

Query: 127 GASLTAKTKAGKTPLDLA 144
           G  +    + G TPL  A
Sbjct: 132 GQDVDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  137 bits (347), Expect = 3e-40
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A R G L  V   L+      +  D    + +HLAA  G T +V+YL     DV   
Sbjct: 80  LHWATRQGHLSMVV-QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 68  AMDDMSAIHFASQKGH-LEVVRTLVSSGVSIKACTRK-GLNPLHYAVQGSHLELVKYLLR 125
             + M+ + +A+ + H ++  R L++  VS+    +      LH+AV   +  ++  LL 
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 126 KGASLTAKTKAGKTPLDLA 144
            GA++ A+   G++ LDLA
Sbjct: 199 AGANVDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  131 bits (331), Expect = 9e-38
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDK-HSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LH AA +  +  V+   IS    V+      + TPLH A   G   +V  L K  AD   
Sbjct: 46  LHWAAINNRIDLVK-YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH-LELVKYLLR 125
              +  S IH A+Q GH  +V  L++ G  +    + G+ PL +A   +H ++  + LL 
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164

Query: 126 KGASLTAKTKA-GKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGE 173
              S+    K    T L  A    N  + S L          N++ +   GE
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLL-----LEAGANVDAQNIKGE 211

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (318), Expect = 9e-36
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +   D +S   +  A   G  E    L +   DV     ++++ +H+A+    +++V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 91  VSSGVSIKACTRK-GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +S G  +          PLH+A +  HL +V  L++ GA  +     G + + LA
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (301), Expect = 3e-33
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGA 66
           +H AA+ G    V   LI+    V+  D++  TPL  AA+     +    L      V  
Sbjct: 113 IHLAAQFGHTSIVA-YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171

Query: 67  AAMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                  +A+H+A   G+  V+  L+ +G ++ A   KG + L  A Q  ++ ++ +L  
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

Query: 126 KGASLTAK 133
              +    
Sbjct: 232 ARQAKGYD 239

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  137 bits (347), Expect = 4e-41
 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA++GD++ V+ +     ++    +    TPLH AA   +  VV YL ++ ADV A 
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
               +  +H A   GH EV   LV  G  +         PLH A      E+ K LL+ G
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 128 ASLTAKTKAGKTPLDLAR--NEEIRSFL 153
           A  T K + G TPLDL +  + +I+  L
Sbjct: 132 ADPTKKNRDGNTPLDLVKDGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (285), Expect = 9e-32
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA    +  V+  L+ +   V+++DK    PLH A   G  EV   L K+ A V  A
Sbjct: 46  LHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +   + +H A+ KG  E+ + L+  G       R G  PL     G   ++   L    
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGDA 163

Query: 128 A 128
           A
Sbjct: 164 A 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  106 bits (267), Expect = 5e-29
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS 93
           +  +   L  AA +G  E V  LC  +  +         + +HFA+    + VV  L+  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           G  + A  + GL PLH A    H E+ + L++ GA +        TPL  A
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  139 bits (352), Expect = 6e-41
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 8   LHAAARSGDLKAVQSILISN----PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
            H A        ++  L+ +     L + +R+    T LH+A  +   E V  L +  AD
Sbjct: 83  AHLACEHRSPTCLR-ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 64  VGAAAMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           + A  +    S +  A +   L +V+ L+  G ++ A    G + LH A     L LV+ 
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 201

Query: 123 LLRKGASLTAKTKAGKTPLDLAR---NEEIRSFL 153
           L+R GA  + K     TPL +AR     +I    
Sbjct: 202 LVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  131 bits (331), Expect = 9e-38
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA----D 63
           LH A  +     V+ +L++   S  + D+H +T  HLA        +  L  + A    D
Sbjct: 50  LHLAVITTLPSVVR-LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYAVQGSHLELVKY 122
           + A   D ++A+H A      E V+ L+  G  I A   K G +PL +AV+ + L +V+ 
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 123 LLRKGASLTAKTKAGKTPLDLA 144
           LL+ GA++ A+  +G + L  A
Sbjct: 169 LLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (328), Expect = 3e-37
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 8   LHAAARSGDLKAVQSILISNPLS----VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
           LH A   G+L AV   L++        ++  +   +TPLHLA  +    VV  L    A 
Sbjct: 13  LHIAVVQGNLPAVH-RLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSSG----VSIKACTRKGLNPLHYAVQGSHLEL 119
             A      +A H A +      +R L+ S     + ++A    GL  LH AV     E 
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 120 VKYLLRKGASLTAK-TKAGKTPLDLA 144
           V+ LL +GA + A   K+G++PL  A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHA 157

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  118 bits (299), Expect = 4e-33
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS-RTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LH A  +   + VQ +L+     +++ D  S R+PL  A  +    +V  L ++ A+V A
Sbjct: 120 LHVAVNTECQETVQ-LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 SA+H AS +G L +VRTLV SG            PL  A     +++++    +
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

Query: 127 GAS 129
            AS
Sbjct: 239 PAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  115 bits (290), Expect = 1e-31
 Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLC----KNKADVGAAAMDDMSAIHFASQKGHLEV 86
               D+   TPLH+A   G    V  L     +   ++        + +H A       V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 87  VRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT----AKTKAGKTPLD 142
           VR LV++G S  A  R G    H A +      ++ LL   A  T    A+   G T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 143 LA 144
           +A
Sbjct: 122 VA 123

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (349), Expect = 3e-40
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 5/152 (3%)

Query: 8   LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LHAA  +      Q ILI N    +++R     TPL LAA      ++  L  + ADV A
Sbjct: 94  LHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 SA+H+A+   +++    L+ +G +      +   PL  A +    E  K LL  
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

Query: 127 GASLTAKTKAGKTPLDLAR---NEEIRSFLEE 155
            A+        + P D+A+   + +I   L+ 
Sbjct: 213 FANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  133 bits (337), Expect = 1e-38
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGA 66
           LH AAR     A +  L+      N +D   RTPLH A  +    V   L +N+A D+ A
Sbjct: 61  LHLAARYSRSDAAK-RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
              D  + +  A++     ++  L++S   + A    G + LH+A   ++++    LL+ 
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

Query: 127 GASLTAKTKAGKTPLDLA 144
           GA+   +    +TPL LA
Sbjct: 180 GANKDMQNNREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (297), Expect = 1e-32
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR      ++  LI++   VN+ D   ++ LH AA     +    L KN A+    
Sbjct: 128 LILAARLAVEGMLE-DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              + + +  A+++G  E  + L+    +          P   A +  H ++V+ L  + 
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 128 A 128
            
Sbjct: 247 H 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (268), Expect = 2e-28
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 31  VNSRDKHSRTPLHLAAWSGQT-------------EVVSYLCKNKADVGAAAMDD-MSAIH 76
           VN R     TPL +A+ SG                V+S      A +         +A+H
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 77  FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAKTK 135
            A++    +  + L+ +          G  PLH AV      + + L+R  A+ L A+  
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 136 AGKTPLDLA 144
            G TPL LA
Sbjct: 123 DGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 90.2 bits (225), Expect = 4e-22
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA   ++ A   +L+ N  + + ++    TPL LAA  G  E    L  + A+    
Sbjct: 161 LHWAAAVNNVDAAV-VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
              D      A ++ H ++VR L       
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 63  DVGAAAMDDMSAIHFASQKG-------------HLEVVRTLVSSGVSIKACT-RKGLNPL 108
           DV     D  + +  AS  G                V+   +  G S+   T R G   L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 109 HYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           H A + S  +  K LL   A    +   G+TPL  A
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 95  VSIKACTRKGLNPLHYAV-------------QGSHLELVKYLLRKGASLT-AKTKAGKTP 140
           + +      G  PL  A              +     ++   + +GASL     + G+T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 141 LDLA 144
           L LA
Sbjct: 61  LHLA 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (346), Expect = 2e-39
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 1/138 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
               ++       +       L + + +    TPLH+A      E+V  L    AD+   
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 68  AMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + +H A +     V+  L+ +G    A    G  PL  A+   +  L + L   
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 127 GASLTAKTKAGKTPLDLA 144
           GA          +P   +
Sbjct: 248 GAPEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (309), Expect = 5e-34
 Identities = 29/154 (18%), Positives = 44/154 (28%), Gaps = 18/154 (11%)

Query: 8   LHAAARSGDLKAVQSILIS---NPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           LH A        +   L+        ++ ++   +T LHLAA  G+   V  L    A V
Sbjct: 13  LHLAVIHQHEPFLD-FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP--------------LHY 110
             A     +A+H A +         L+    S                            
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 111 AVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +      E           L A+   G TPL +A
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (274), Expect = 6e-29
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS-RTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LH A    D + V+ +L      +N  +    RTPLHLA  +    V+  L K  AD  A
Sbjct: 162 LHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + +  A  + +  + R L + G          L+P   +   S  +        
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

Query: 127 G 127
            
Sbjct: 281 D 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (263), Expect = 2e-27
 Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 3/121 (2%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG---AAAMDDMSAIHFASQKGHLEVV 87
                +   T LHLA        + +L    A             +A+H A+  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 88  RTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE 147
             L ++G  +    R G   LH A +         LL+   S                  
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 148 E 148
           +
Sbjct: 122 D 122

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (339), Expect = 4e-39
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 8   LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           LHAA  +      Q ILI N    +++R     TPL LAA      ++  L  + ADV A
Sbjct: 62  LHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 SA+H+A+   +++    L+ +G +      +   PL  A +    E  K LL  
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180

Query: 127 GASLTAKTKAGKTPLDLA---RNEEIRSFL 153
            A+        + P D+A    + +I   L
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (335), Expect = 2e-38
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGA 66
           LH AAR     A +  L+      N +D   RTPLH A  +    V   L +N+A D+ A
Sbjct: 29  LHLAARYSRSDAAK-RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
              D  + +  A++     ++  L++S   + A    G + LH+A   ++++    LL+ 
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

Query: 127 GASLTAKTKAGKTPLDLA 144
           GA+   +    +TPL LA
Sbjct: 148 GANKDMQNNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (297), Expect = 7e-33
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR      ++  LI++   VN+ D   ++ LH AA     +    L KN A+    
Sbjct: 96  LILAARLAVEGMLE-DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              + + +  A+++G  E  + L+    +          P   A +  H ++V+ L    
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 128 A 128
            
Sbjct: 215 L 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (287), Expect = 2e-31
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 15  GDLKAVQSILISNPLSV-NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS 73
           GD  AV S  I    S+ N  D+   T LHLAA   +++    L +  AD         +
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 74  AIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA 132
            +H A       V + L+ +    + A    G  PL  A + +   +++ L+   A + A
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 133 KTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGE 173
               GK+ L  A    N +    L          N + +    E
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQNNREE 159

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.5 bits (218), Expect = 3e-21
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA   ++ A   +L+ N  + + ++    TPL LAA  G  E    L  + A+    
Sbjct: 129 LHWAAAVNNVDAAV-VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
              D      A ++ H ++VR L    +    
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 53.6 bits (130), Expect = 5e-09
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR G  +  + +L+ +  + +  D   R P  +A      ++V  L +        
Sbjct: 162 LFLAAREGSYETAK-VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  133 bits (337), Expect = 1e-38
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 22/211 (10%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L    R+   K      I++ + V          L  ++  G+ ++V  +     D    
Sbjct: 9   LPPGKRTNLRKTGS-ERIAHGMRVKFNPLP-LALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             + ++A+H A   GH E+V+ LV  GV++ A    G  PLH A   +++++ K+L+  G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126

Query: 128 ASLTAKTKAGK---TPLDLARNE---EIRSFLEEWEQSSKKPNLNGKEKAGESETKLGD- 180
           A++ A T +             E   +   FL        +  +    K       L D 
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-----GVQEKMGIMNKGV--IYALWDY 179

Query: 181 ---SGVEVSASSPDGKRDENLKRKGDEDDIK 208
              +  E+     D      +  + DED+I+
Sbjct: 180 EPQNDDELPMKEGD---CMTIIHREDEDEIE 207

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (291), Expect = 7e-32
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
           +   +  L     +   +  S    +   V       ++ +  +S +G  ++V+ ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
                   +G+  LH AV   H E+VK+L++ G ++ A    G TPL  A
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  129 bits (327), Expect = 1e-38
 Identities = 55/121 (45%), Positives = 77/121 (63%), Gaps = 1/121 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AAR+G L+ V+ +L+     VN++DK+ RTPLHLAA +G  EVV  L +  ADV A 
Sbjct: 6   LHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  + +H A++ GHLEVV+ L+ +G  + A  + G  PLH A +  HLE+VK LL  G
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 128 A 128
           A
Sbjct: 125 A 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  123 bits (313), Expect = 2e-36
 Identities = 51/106 (48%), Positives = 67/106 (63%)

Query: 39  RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
           RTPLHLAA +G  EVV  L +  ADV A   +  + +H A++ GHLEVV+ L+ +G  + 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           A  + G  PLH A +  HLE+VK LL  GA + AK K G+TPL LA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 87.0 bits (217), Expect = 3e-22
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
           +  + +H A++ GHLEVV+ L+ +G  + A  + G  PLH A +  HLE+VK LL  GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 130 LTAKTKAGKTPLDLA 144
           + AK K G+TPL LA
Sbjct: 61  VNAKDKNGRTPLHLA 75

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  134 bits (339), Expect = 2e-38
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           +L     +   K ++S L S        D H  +  + A       +V  L    A    
Sbjct: 3   DLSRIN-TWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
              ++   +H A+     ++V+ L+ SG+       KG   L+YAV   +++ VK  ++K
Sbjct: 60  L--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 127 GASLTAKTKAG-KTPLDLA 144
              L    K G KT    A
Sbjct: 118 NWRLMFYGKTGWKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  130 bits (329), Expect = 6e-37
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA   D K V+ IL+ + L  +  D    T L+ A  SG  + V    K    +   
Sbjct: 66  LHQAATLEDTKIVK-ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 68  AMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 ++ + A     + +V   +S   S        L+ +H  ++  H++++  LL  
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDY 183

Query: 127 GASLTAKTKAGKTPL 141
             S          P 
Sbjct: 184 MTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (294), Expect = 8e-32
 Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 10/142 (7%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
            + A    D+  V    +S  +          + +H+   +G  +++  L          
Sbjct: 133 FYHAVMLNDVSIVS-YFLSE-IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 68  AMDDMS-AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                   I  A     +E+++ L    ++I +            V     E+ K ++ K
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEK 243

Query: 127 GASLTAKTKAGKTPLDLARNEE 148
                + +      +      +
Sbjct: 244 HVEYKSDSYTKDLDIVKNNKLD 265

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 6/77 (7%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +  A  + D++ +Q  L    +++        +           E+   + +   +  + 
Sbjct: 199 IKLAIDNKDIEMLQ-ALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 68  AMDDMSAIHFASQKGHL 84
           +      I   ++   +
Sbjct: 251 SYTKDLDIVKNNKLDEI 267

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  130 bits (329), Expect = 2e-38
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 3/138 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L +AA  GDL+ +   L+ N ++VN+++   RT L +    G  E+   L    A+    
Sbjct: 9   LASAAARGDLEQLT-SLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + IH A++ G L+ ++TL+     +     +G  PLH A +  HL +V++L++  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 128 AS-LTAKTKAGKTPLDLA 144
           AS +  +   G T  DLA
Sbjct: 127 ASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  111 bits (281), Expect = 3e-31
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L      G+ +  +  L+    + + +D+     +H AA +G  + +  L + +ADV   
Sbjct: 42  LQVMKL-GNPEIAR-RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
             +    +H A+++GHL VV  LV     ++     KG      A      E+V  +   
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

Query: 127 GA 128
           GA
Sbjct: 160 GA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  104 bits (263), Expect = 1e-28
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 39  RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
              L  AA  G  E ++ L +N  +V A      +A+      G+ E+ R L+  G +  
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD 64

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
              R G   +H A +   L+ ++ LL   A +  +   G  PL LA
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.8 bits (128), Expect = 5e-09
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARN 146
              N L  A     LE +  LL+   ++ A+   G+T L + + 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL 47

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  129 bits (326), Expect = 4e-38
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 3/136 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA  G ++ V+  L+    + N+ + + R P+ +    G   V   L  + A+   A
Sbjct: 16  LATAAARGRVEEVR-ALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 68  AMDDM-SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
               +   +H A+++G L+ +  L  +G  +      G  P+  A +  H ++ +YL   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

Query: 127 GASLTAKTKAGKTPLD 142
                    A     +
Sbjct: 134 AGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (308), Expect = 3e-35
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 2/116 (1%)

Query: 30  SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRT 89
           +  S  + S   L  AA  G+ E V  L +  A+  A        I      G   V   
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAEL 62

Query: 90  LVSSGVSIKACTRKGL-NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           L+  G          L  P+H A +   L+ +  L R GA L  +   G+ P+DLA
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 95.2 bits (238), Expect = 7e-25
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRT-PLHLAAWSGQTEVVSYLCKNKADVGA 66
           +      G  +  + +L+ +    N  D  + T P+H AA  G  + +  L +  A +  
Sbjct: 49  IQVMMM-GSARVAE-LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
                   +  A + GH +V R L ++    +     G N           ++ 
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.0 bits (214), Expect = 2e-21
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
           +   G++       +  A+ +G +E VR L+ +G +  A    G  P+   + G    + 
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVA 60

Query: 121 KYLLRKGASLTAKTKAGKT-PLDLA 144
           + LL  GA       A  T P+  A
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDA 85

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  130 bits (330), Expect = 7e-38
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 2/138 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGA 66
           LH AA+ G+L  ++   + N + VN  DK   T L+ A   G  ++V  L      ++  
Sbjct: 77  LHEAAKRGNLSWLR-ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 +A+H A+ KG+ ++V+ L++ G        +       A   +   L+K     
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

Query: 127 GASLTAKTKAGKTPLDLA 144
            A  T          + +
Sbjct: 196 DAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  127 bits (322), Expect = 1e-36
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
                  G    + S        V  + +    PLH AA  G    +     N+  V   
Sbjct: 49  WWKGTSKGRTGLIPS------NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                +A+++A   GH ++V  L +   + +    + G   LH A    + ++V+ LL K
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLE 154
           GA    +    K   D+A N    S L+
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLK 190

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  115 bits (291), Expect = 4e-32
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           ++  A  + + +     L      +      S T        G+T ++      +     
Sbjct: 15  KVFRALYTFEPRTPD-ELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE-- 71

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + +H A+++G+L  +R  + + V +    + G   L++A  G H ++V+ L  +
Sbjct: 72  ---SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128

Query: 127 -GASLTAKTKAGKTPLDLA 144
               L  + K G T L  A
Sbjct: 129 PNIELNQQNKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 1e-26
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 7/120 (5%)

Query: 25  ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL 84
           +S P       K  +  +  A ++ +      L   + D+        +     + KG  
Sbjct: 1   MSKPP--PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT 58

Query: 85  EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
            ++         +        NPLH A +  +L  ++  L     +    KAG T L  A
Sbjct: 59  GLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (252), Expect = 3e-26
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 8   LHAAARSGDLKAVQSILISNP-LSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           L+ A   G    V+ +L + P + +N ++K   T LH AAW G  ++V  L    A    
Sbjct: 110 LYWACHGGHKDIVE-MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL 117
             ++   A   A+      +++    +         +       +    H 
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  127 bits (323), Expect = 8e-38
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+  GD+ +V+  L+ N    N +D    TPLH A   G  +VV  L ++KA V   
Sbjct: 14  LHIASIKGDIPSVE-YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              + S +H A++ GH+++V+ L+S G S  A    GL P+ Y    S   L+    +  
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 128 ASLTA 132
           +S  +
Sbjct: 133 SSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  125 bits (318), Expect = 4e-37
 Identities = 37/121 (30%), Positives = 57/121 (47%)

Query: 34  RDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS 93
            +    T LH+A+  G    V YL +N +D         + +H A   GHL+VV  L+  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
              +     +  +PLH A +  H+++VK LL  GAS  A    G  P+D   +E ++S L
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 154 E 154
            
Sbjct: 126 L 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  128 bits (325), Expect = 8e-38
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR+G    V+ IL++N       D    +PLHLAA  G       L +      A 
Sbjct: 6   LLEAARAGQDDEVR-ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
              D + +H A+ +GH  +V  L+  G  + A     +  LH+A + +H E+V+ L++ G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFLE 154
           A +  ++K  KT  D++    NE++   L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (279), Expect = 6e-31
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
             L  AA +GQ + V  L  N A          S +H A+Q GH      L+ +GVS  A
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
            T+    PLH A    H  +V+ LL+ GA + AK     T L  A
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 104 GLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
               L  A +    + V+ L+  GA        G +PL LA
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLA 41

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  127 bits (322), Expect = 8e-38
 Identities = 33/120 (27%), Positives = 49/120 (40%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
                     A  +G  + V        DV          +H+A+  G LE++  L+  G
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
             I A  +  + PL  AV   H+  VK LL KGA  T K   G T  +   N+ I++ L+
Sbjct: 64  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  121 bits (306), Expect = 2e-35
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
              A ++GDL  V+   ++    VN   +  R PLH AA  GQ E++ +L    AD+ A 
Sbjct: 11  FMWALKNGDLDEVK-DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
               ++ +  A  +GH+  V+ L+S G         GL         +   L++
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (333), Expect = 2e-37
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A  SG    V  +L+ +  SV   +    +P+H AA  G  E V+ L     ++   
Sbjct: 129 LFNACVSGSWDCVN-LLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + ++ A +      V+ L+ SG  +    +   +PLH  V+ +  EL   L+  G
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG 245

Query: 128 ASLTAKTKAGKTPLDLA--RNEEIRSFLEE 155
           A   AK   GK P++L    +   + FLE 
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPLAQLFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (331), Expect = 3e-37
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A   G L  V+ IL+ +   VN       TPL  A  SG  + V+ L ++ A V   
Sbjct: 96  LHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           + D  S IH A+++GH+E V +L++ G +I         PL+ A +      VK LL  G
Sbjct: 155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 128 ASLTAKTKAGKTPLDLA 144
           A +  + K   +PL   
Sbjct: 214 ADV-NQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  122 bits (310), Expect = 3e-34
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 3/142 (2%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
            ++  +  +  +G        L+SNPL  ++      +P+H AA  G    +  L     
Sbjct: 26  GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD--WSPMHEAAIHGHQLSLRNLISQGW 83

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
            V     D +S +H A   GHL  V+ L+  G  +   T     PL  A      + V  
Sbjct: 84  AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143

Query: 123 LLRKGASLTAKTKAGKTPLDLA 144
           LL+ GAS+  ++    +P+  A
Sbjct: 144 LLQHGASVQPESD-LASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  118 bits (298), Expect = 2e-32
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H AAR G ++ V   LI+   +++ +  H  TPL+LA  + Q   V  L ++ ADV   
Sbjct: 161 IHEAARRGHVECVN-SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQ 218

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                S +H   +    E+   L+  G   +A   +G  P+      S L    +L R+G
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA-QLFLEREG 277

Query: 128 ASL 130
           ASL
Sbjct: 278 ASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (281), Expect = 7e-30
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 13/139 (9%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDK-----HSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
            +           L+     + S D          P     + G   + + L  +     
Sbjct: 2   GSSHHHHHHSS-GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV--- 57

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                D S +H A+  GH   +R L+S G ++   T   ++PLH A  G HL  VK LL+
Sbjct: 58  ----SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 126 KGASLTAKTKAGKTPLDLA 144
            GA +   T    TPL  A
Sbjct: 114 HGAQVNGVTADWHTPLFNA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 44  LAAWSGQTEVVSYLCKNKADVGA-----AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
           + +        S L    + + +       MD           G       L+S+ +   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           A      +P+H A    H   ++ L+ +G ++   T    +PL  A
Sbjct: 56  A--VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA 99

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  128 bits (324), Expect = 3e-37
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 1/137 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A   G   A+   L+ N   +  +D    T L  A  + +  +   L    ++V   
Sbjct: 39  LMVACMLGMENAID-KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + + ++   G+ E+   L+  G ++     +G  PL  A +    E+VK LL  G
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 128 ASLTAKTKAGKTPLDLA 144
           A ++A+   G T    A
Sbjct: 158 ADISARDLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (289), Expect = 5e-32
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
                     + +           N RD ++RTPL +A   G    +  L +N   +   
Sbjct: 12  EKIKDEKSINQNLD-------FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            ++  +A+ +A +   L +   L+S G ++      G  PL +++   + E+  +LL  G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 128 ASLTAKTKAGKTPLDLA 144
           A++  +   G+TPL +A
Sbjct: 125 ANVNDRNLEGETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (269), Expect = 4e-29
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A ++  L   +  L+S   +VN++D   +TPL  +   G +E+  +L ++ A+V   
Sbjct: 72  LIWAVKNNRLGIAE-KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR 130

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
            ++  + +  AS+ G  E+V+ L+  G  I A    GL     A      E++K   
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.5 bits (239), Expect = 1e-24
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           +  DK+      +       + + +L +N  D       + + +  A   G    +  LV
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL-RNYRD-----SYNRTPLMVACMLGMENAIDKLV 55

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
            +   ++    +G   L +AV+ + L + + LL KG+++  K  +GKTPL  +
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.6 bits (195), Expect = 3e-18
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  +   G  +     L+ +  +VN R+    TPL +A+  G++E+V  L +  AD+ A 
Sbjct: 105 LMWSIIFGYSEMSY-FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVS 92
            +  ++A   A   G  EV++    
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           L  A++ G  + V+  L+     +++RD    T    A   G+ EV+    + + 
Sbjct: 138 LIVASKYGRSEIVK-KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  132 bits (334), Expect = 5e-37
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 14/151 (9%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL---------- 57
           LH A             +   + VN  D     PL+L+  +    +   L          
Sbjct: 215 LHWAILINWEDVAM-RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

Query: 58  ---CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQG 114
                N   V    +  +  +  A+     EV++ L      +      G        + 
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK 333

Query: 115 SHLELVKYLLRKGASLTAKTKAGKTPLDLAR 145
           +   + +  L   A +  ++++      +++
Sbjct: 334 AAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 5e-34
 Identities = 46/198 (23%), Positives = 66/198 (33%), Gaps = 41/198 (20%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           +H AAR G    V+  LI   +S   +++   T LHLA   G  +   YL         +
Sbjct: 24  IHVAARKGQTDEVR-RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH--S 80

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK------ 121
                  IH A      ++V  LV           +G  P     +    E+ +      
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVK 134

Query: 122 -----------------------YLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
                                   L++ GAS TAK KA +TPL  A   RN E    + +
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 156 WEQSSKKPNLNGKEKAGE 173
              S     L+   K G 
Sbjct: 195 TVPSKSSLRLDYANKQGN 212

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (309), Expect = 2e-33
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 29/165 (17%)

Query: 8   LHAAARSGDLKAVQSILISN-------PL--------------SVNSRDKHSRTPLHLAA 46
           +H A  +     V   L+         P                 + +    +T LH   
Sbjct: 88  IHLAVMANKTDLVV-ALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV 146

Query: 47  WSGQ--TEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV-----SSGVSIKA 99
             G    E++  L +  A   A    D + +  A +  + E +  ++      S + +  
Sbjct: 147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
             ++G + LH+A+  +  ++    +  G  +  +      PL L+
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (309), Expect = 2e-33
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 27/187 (14%)

Query: 8   LHAAARSGDL-KAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL-----CKNK 61
           LH     G     +  IL+    S  ++DK   TPL  A      E +  +      K+ 
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
             +  A     S +H+A      +V    V  G+ +     +   PL+ +V+ + + L K
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261

Query: 122 YLLRKGASLT-------------AKTKAGKTPLDLA---RNEEIRSFLEEWEQSSKKPNL 165
            LL+K                           +  A     +E+   L       K   +
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL-----QEKLDEV 316

Query: 166 NGKEKAG 172
                 G
Sbjct: 317 VRSLNTG 323

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  112 bits (282), Expect = 2e-29
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
               D  +   +H+AA  GQT+ V  L +             +A+H A + G ++  + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
            S G         G  P+H AV  +  +LV  L+          + G+ P  L 
Sbjct: 73  ASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLL 118

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
           K +   +  ++M  IH A++KG  + VR L+ +GVS     R G   LH A +   ++  
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69

Query: 121 KYLLRKGASLTAKTKAGKTPLDLA 144
           KYL   G   +     G+ P+ LA
Sbjct: 70  KYLASVGEVHSLWH--GQKPIHLA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 81  KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTP 140
            G +          ++      + +  +H A +    + V+ L+  G S T + + G T 
Sbjct: 2   PGSM-----TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA 56

Query: 141 LDLA 144
           L LA
Sbjct: 57  LHLA 60

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (323), Expect = 6e-37
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L AA +    K  + IL      V+  D    TPL++A  +   E+   L    AD+   
Sbjct: 10  LEAANQRDTKKVKE-ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                S   +A  +G  E++  ++      +    R G N L  A +  H++ VK LL  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 127 G-ASLTAKTKAGKTPLDLA 144
           G   +  +   G T L  A
Sbjct: 129 GREDIDFQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (308), Expect = 8e-35
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGA 66
           L+ A  + D++  +  LI     +N ++  S +P   A   G+TE+++Y+ K+   D+  
Sbjct: 43  LNIAVHNNDIEIAK-ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGS-----HLELV 120
                 +A+  A++KGH++ V+ L+  G   I      G   L  AV        + ++V
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161

Query: 121 KYLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFL 153
           K L+  GA  + K  +G+T +D A      EI   L
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 2e-31
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 1/112 (0%)

Query: 34  RDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS 93
           +       L  A      +V   L      V     +  + ++ A     +E+ + L+  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAKTKAGKTPLDLA 144
           G  I        +P  YA      E++ Y+L+     L    + G   L  A
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (252), Expect = 1e-26
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 8   LHAAARSGDLKAVQSILISN-PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN-KADVG 65
              A   G  + +   ++ +    +N  +++    L  AA  G  + V  L ++ + D+ 
Sbjct: 76  YLYAGAQGRTEILA-YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 66  AAAMDDMSAIHFA-----SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
                  +A+  A       + + ++V+ L+ +G         G   + YA Q  + E+ 
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194

Query: 121 KYLL 124
           K L 
Sbjct: 195 KILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.8 bits (185), Expect = 1e-16
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 8   LHAAARSGDLKAVQSILISNPLS-VNSRDKHSRTPLHLAAWS-----GQTEVVSYLCKNK 61
           L  AA  G +  V+ +L+ +    ++ ++    T L  A           ++V  L +N 
Sbjct: 110 LIPAAEKGHIDNVK-LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVS 92
           AD         +A+ +A+QKG+ E+ + L  
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  125 bits (316), Expect = 1e-36
 Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           ++     S   L  AA  GQ E V  L +  AD  A        I      G  +V   L
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 91  VSSGVSIKACTRKGL-NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +  G          L  P+H A +   L+ +  L R GA L      G+ P+DLA
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  122 bits (310), Expect = 6e-36
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA  G ++ V+  L+      N+ ++  R P+ +    G  +V   L  + A+   A
Sbjct: 16  LATAAARGQVETVR-QLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73

Query: 68  AMDDM-SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
               +   +H A+++G L+ +  L  +G  +  C   G  P+  A +  H ++ +YL   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

Query: 127 GA 128
             
Sbjct: 134 TG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 3e-21
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVK 121
             +        + +  A+ +G +E VR L+ +G    A  R G  P+   + G   ++ +
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAE 61

Query: 122 YLLRKGASLTAKTKAGKT-PLDLA 144
            LL  GA       A  T P+  A
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDA 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
           +H AAR G L  +  +L      ++  D   R P+ LA   G  ++  YL     D
Sbjct: 82  VHDAAREGFLDTLV-VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.4 bits (132), Expect = 8e-10
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
              I          L  A     +E V+ LL  GA   A  + G+ P+ + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  128 bits (323), Expect = 1e-36
 Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 8   LHAAARSGDLKAVQSI---LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           LH A    +      +   +  +   +N ++   +TPLHLA  + Q E+   L     D 
Sbjct: 12  LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSG------VSIKACTRKGLNPLHYAVQGSHLE 118
                   + +H A ++G L  V  L  S         +KA    G   LH A    +L 
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 119 LVKYLLRKGASLTAKTKA-GKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAGE 173
           +V+ L+  GA + A+    G+T L LA   +N ++ S L          ++N     G 
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-----KCGADVNRVTYQGY 185

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  103 bits (259), Expect = 4e-27
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 35  DKHSRTPLHLAAWSGQT----EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
            +   + LHLA    +     EV+  +  + A +        + +H A      E+   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA------SLTAKTKAGKTPLDLA 144
           + +G   +    +G  PLH A +   L  V  L +          L A    G T L LA
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 98  KACTRKGLNPLHYAVQGSH----LELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +  T  G + LH A+        +E+++ +    A L  +    +TPL LA
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 52

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  123 bits (311), Expect = 2e-36
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
            K   TPLH AA +G  E V  L    ADV A + D  + +H A++ GH E+V+ L++ G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
             + A ++ G  P H A +  H E+VK L  KGA + A++       
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  108 bits (272), Expect = 2e-30
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA++G  + V+  L+S    VN+R K   TPLHLAA +G  E+V  L    ADV A 
Sbjct: 13  LHNAAKNGHAEEVK-KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHY 110
           + D  +  H A + GH E+V+ L + G  + A +    +  H+
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.4 bits (210), Expect = 3e-21
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 65  GA--AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           G    + D  + +H A++ GH E V+ L+S G  + A ++ G  PLH A +  H E+VK 
Sbjct: 1   GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 123 LLRKGASLTAKTKAGKTPLDLA 144
           LL KGA + A++K G TP  LA
Sbjct: 61  LLAKGADVNARSKDGNTPEHLA 82

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  126 bits (320), Expect = 3e-36
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA+  D++A+  +L      V+ R     T LH+AA     E    L +   ++   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 68  AM-----DDMSAIHFASQKGHLEVVRTLVSSGVSIKA-------------CTRKGLNPLH 109
            M     +  +A+H A    ++ +VR L++ G S+ A                 G +PL 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 110 YAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +A      E+V+ L+  GA + A+   G T L + 
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  108 bits (272), Expect = 4e-29
 Identities = 41/177 (23%), Positives = 60/177 (33%), Gaps = 32/177 (18%)

Query: 8   LHAAARSGDLKAVQSILISN-----PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           LH AA   +L+A   +L+          + S     +T LH+A  +    +V  L    A
Sbjct: 41  LHIAALYDNLEAAM-VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 63  DVGAAAMDDMS-------------AIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLH 109
            V A A   +               + FA+  G  E+VR L+  G  I+A    G   LH
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

Query: 110 YAVQGSHLELV----KYLLRKGASLTAKT------KAGKTPLDLA---RNEEIRSFL 153
             +   +          LL        K+        G TP  LA    N  +   L
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 89.2 bits (222), Expect = 7e-22
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 22/136 (16%)

Query: 40  TPLHLAAWSGQTEVVS-YLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
           +PL LAA     + +S  L     +V        +A+H A+   +LE    L+ +   + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 99  AC-----TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK-------------AGKTP 140
                    +G   LH AV   ++ LV+ LL +GAS++A+                G+ P
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 141 LDLA---RNEEIRSFL 153
           L  A    +EEI   L
Sbjct: 125 LSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 104 GLNPLHYAVQGSHLELV-KYLLRKGASLTAKTKAGKTPLDLA 144
             +PL  A + + ++ + K L  +G  +  +   G+T L +A
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA 44

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  125 bits (317), Expect = 6e-36
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 4/145 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA +G+L+ VQ   +      +  ++   T LH A       +V +L    A+V + 
Sbjct: 25  LLDAALTGELEVVQ-QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYA--VQGSHLELVKYLL 124
                + +H A+      +   LV  G +I A T   G          +  + +   YL 
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 125 RKGASLTAKTKAGKTPLDLARNEEI 149
               S+          L     E  
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEFG 168

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  120 bits (304), Expect = 6e-34
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 14/160 (8%)

Query: 23  ILISNPLSVNSRDKHSRTP---LHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
            ++    S     +    P   L  AA +G+ EVV    K   D      + ++A+H A 
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62

Query: 80  QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT-KAGK 138
              +  +V  L+++G ++ +    G  PLH A   +   +   L++ GA++ A T   G 
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 139 TPLDLARN-----EEIRSFLEEWEQSSKKPNLNGKEKAGE 173
           T  +          +  ++L     +  + ++        
Sbjct: 123 TAFEKCDPYREGYADCATYL-----ADVEQSMGLMNSGAV 157

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  111 bits (279), Expect = 3e-30
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   V   LI+   +VNS D H  TPLH AA    T +   L ++ A + A 
Sbjct: 58  LHNAICGANYSIVD-FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 68  AMDD-MSAIHFAS--QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
            + D  +A       ++G+ +    L     S+       +  L         E + +  
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFRE 175

Query: 125 RKGASLTAKTKAGKTPLDLA 144
            +  ++  +    +T    A
Sbjct: 176 GESVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 6/138 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWS--GQTEVVSYLCKNKADV 64
           LH AA   D       L+ +  ++ +       T          G  +  +YL   +  +
Sbjct: 91  LHCAASCNDTVICM-ALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV-KYL 123
           G      + A+   S +   E+        V++            +A        V +  
Sbjct: 150 GLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

Query: 124 LRKGASLTAKTKAGKTPL 141
                 +  +    K   
Sbjct: 209 FGLFPRVKPQRSKVKHHH 226

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (318), Expect = 3e-35
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
                  G    ++   +        +          A  SG TE V  L +  AD+  A
Sbjct: 12  EQLKRWIGSETDLE-PPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +D ++A+H A    ++++V+ LV +G +I     +G  PLH A    +L++ +YL+ +G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 128 ASLTAKTKAGKTPLDLA 144
           A + A    G TPLD+A
Sbjct: 130 AHVGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  125 bits (317), Expect = 4e-35
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             AA  SGD + V   L+     +N  +    T LH A      ++V +L +N A++   
Sbjct: 44  FLAACSSGDTEEVL-RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL-RK 126
             +    +H A+  G+L++   L+S G  + A   +G  PL  A + +  EL++  + R+
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGE 173
           G  + A  K  +  +      + R +L     +S   N     K+G 
Sbjct: 163 GVDIEAARKEEERIM----LRDARQWL-----NSGHINDVRHAKSGG 200

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (300), Expect = 1e-32
 Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHL----------------------- 44
           LHAAA  G L   +  LIS    V + +    TPL +                       
Sbjct: 110 LHAAASCGYLDIAE-YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 45  ----AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC 100
                      +   +L     +    A    +A+H A+ KG+ EV++ L+ +   +   
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228

Query: 101 TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE 155
              G  PLH A      E  + L+     + A  K G+T  D+A  E+I  +LEE
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD-EDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (285), Expect = 2e-30
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 1/133 (0%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           + E       R   L+  +  L S  ++     K   T LH+AA  G TEV+  L + + 
Sbjct: 165 DIEAARKEEERIM-LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           DV     D  + +H A+  G  E  R LV +   ++A  + G      A +     L + 
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 123 LLRKGASLTAKTK 135
             ++    + K +
Sbjct: 284 QKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 3e-30
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 1/114 (0%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
           +   D   +    L  W G    +      +        DD +    A   G  E V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRL 59

Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +  G  I      GL  LH A    ++++VK+L+  GA++      G  PL  A
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 9/73 (12%)

Query: 103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARN---EEIRSFLEEWEQS 159
           K                ++  + K      K   G   L    +   EE+   L      
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL------ 60

Query: 160 SKKPNLNGKEKAG 172
            +  ++N     G
Sbjct: 61  ERGADINYANVDG 73

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  125 bits (316), Expect = 4e-35
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSR-TPLHLAAWSGQTEVVSYLCKNKADVGA 66
           L  A ++ D+  VQ  L+    +VN +++    TPLH A    + ++V  L ++ AD   
Sbjct: 9   LIKAVQNEDVDLVQ-QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
              +  +    A+  G +++++  +S G  +  C   G      A     ++ +K+L ++
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 127 GASLTAKTK----------AGKTPLDLA 144
           GA++  + K           G T L  A
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  115 bits (290), Expect = 3e-31
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 8   LHAAARSGDLKAVQSILISNP-LSVNSRDKHSRTPLHLAAWSGQT----EVVSYLCKNKA 62
           L  AA  G ++ ++ IL+      VN+ D   R  L  A  S        +   L  + A
Sbjct: 152 LMDAAEKGHVEVLK-ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQGSHLELVK 121
           DV        + +  A +K HL +V+ L+    + I      G   L  AV+    ++ +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 122 YLLRKGASLTAK 133
            L ++GAS    
Sbjct: 271 LLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  114 bits (288), Expect = 6e-31
 Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 20/165 (12%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS----------RTPLHLAAWSGQTEVVSYL 57
              AA  G +KA++  L     +VN R K             T L  AA  G  EV+  L
Sbjct: 109 FMEAAVYGKVKALK-FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 58  CKNK-ADVGAAAMDDMSAIHFASQKGH----LEVVRTLVSSGVSIKACTRKGLNPLHYAV 112
                ADV A      +A+  A           +   L+  G  +     +G  PL  AV
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 113 QGSHLELVKYLL-RKGASLTAKTKAGKTPLDLA---RNEEIRSFL 153
           +  HL LV+ LL ++   +      GKT L LA   + ++I   L
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  111 bits (280), Expect = 9e-30
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 35  DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHFASQKGHLEVVRTLVSS 93
                  L  A  +   ++V  L +  A+V     +   + +H A Q    ++V  L+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 94  GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIR 150
           G       + G  P   A     ++L+K  L KGA +      G T    A      +  
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 151 SFLEEWEQSSKKPNLNGKEKAGESETKLGDSG 182
            FL       +  N+N + K  E + +L   G
Sbjct: 122 KFL-----YKRGANVNLRRKTKEDQERLRKGG 148

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 4e-19
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYAVQGSHLELVKYLLR 125
           AA++D   +  A Q   +++V+ L+  G ++     + G  PLH AVQ S  ++V+ LLR
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 126 KGASLTAKTKAGKTPLDLA 144
            GA    + K G TP  LA
Sbjct: 61  HGADPVLRKKNGATPFLLA 79

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 2e-33
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 7   ELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           E     + G   +           V S      TP   AA     + +S L ++  DV A
Sbjct: 17  EYLIEWKDGHSPSWV-PSSYIAADVVSEY---ETPWWTAARKADEQALSQLLED-RDVDA 71

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYAVQGSHLELVKYLLR 125
              +  +A+ F +  G  + VR L  +G  +     + GL  LH A      E+V+ L+ 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131

Query: 126 KGASLTAKTKAGKTPLDLA 144
            GA +  + + G T L+LA
Sbjct: 132 LGADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  114 bits (289), Expect = 3e-32
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
              AAR  D +A+   L+ +   V++ D++ RT L   A  G  + V  L +  AD+   
Sbjct: 48  WWTAARKADEQALS-QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 68  AMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
            M   ++A+H A+     EVV  LV  G  I+    +GL  L  A +          ++ 
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

Query: 127 GASLTAK 133
           G  +  +
Sbjct: 166 GRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.0 bits (240), Expect = 5e-25
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 27  NPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEV 86
           N +  +           +    G +          ADV +   +  +    A++K   + 
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQA 59

Query: 87  VRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK-TKAGKTPLDLA 144
           +  L+     + A    G   L +       + V+ L   GA L  +  + G T L +A
Sbjct: 60  LSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.4 bits (163), Expect = 9e-14
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 59  KNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLE 118
            NK      A +         + GH             + +   +   P   A + +  +
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQ 58

Query: 119 LVKYLLRKGASLTAKTKAGKTPLDLA 144
            +  LL +   + A  + G+T L   
Sbjct: 59  ALSQLL-EDRDVDAVDENGRTALLFV 83

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 4e-33
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 8   LHAAARSGDLKAVQSILISNPLS---VNSRDKHSRTPLHLAAWSGQTEVVS---YLCKNK 61
           LH AA + D   +   ++++      +   D++  T L + A +   + V+    L +  
Sbjct: 203 LHQAAANRDFGMMV-YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 62  ADVGAAAM--------DDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV 112
           A V                +A+H+A+Q  ++ +V+ LV   G +       G  P+  A 
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321

Query: 113 QGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           Q   +E+V YL+++GAS+ A      T   LA
Sbjct: 322 QEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (299), Expect = 6e-32
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 23/159 (14%)

Query: 8   LHAAARSGDLKAVQSILISNPLS--------VNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
           LH  A +   +  +  LI +           VN+ D    TPL LA  + +  +V+YL K
Sbjct: 129 LHWIASNSSAEKSE-DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187

Query: 60  NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS---SGVSIKACTRKGLNPLHYAVQGSH 116
             AD       + SA+H A+      ++  +++       I+   R G+  L        
Sbjct: 188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG 247

Query: 117 LELV---KYLLRKGA--------SLTAKTKAGKTPLDLA 144
            + V   K L+ KGA           ++   G+T L  A
Sbjct: 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  109 bits (275), Expect = 2e-28
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 8   LHAAARSG--DLKAVQSILISN--------PLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
           L   A +   D  A   +L+              +S     RT LH AA      +V YL
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

Query: 58  -CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
             +  ++      D  + I  A+Q+G +EVV  L+  G S++A           A   +H
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358

Query: 117 LELVKYLLRKGA 128
             +V    R   
Sbjct: 359 HNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (253), Expect = 3e-25
 Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 20/145 (13%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  A+  G +K             N    +S  P      +G   +  +   N       
Sbjct: 41  LLEASYDGYIKRQ----------RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV------- 120
             +    +H  +  G   +   +    V+I    R     LH+    S  E         
Sbjct: 91  EPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHE 148

Query: 121 -KYLLRKGASLTAKTKAGKTPLDLA 144
            K  +  GA + A      TPL LA
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 17/148 (11%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           +     S+  L  A++ G  +      +N+          +         G+  +     
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQ----RNELQ-----HYSLYPNPQGYGNGNDFLGDFNH 81

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEE 148
           ++         +    LH    G    + + + R+  ++    +  +T L       + E
Sbjct: 82  TNLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAE 139

Query: 149 IRSFLEEWEQS---SKKPNLNGKEKAGE 173
               L   E     +   ++N  +    
Sbjct: 140 KSEDLIVHEAKECIAAGADVNAMDCDEN 167

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           +  AA+ G ++ V   LI    SV + D    T   LA  +    +V    + + + 
Sbjct: 317 IMLAAQEGRIEVVM-YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  117 bits (295), Expect = 1e-32
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A  +G  + V+  L+   + VN +D    +PLH+AA +G  E+V  L    A V A 
Sbjct: 44  LHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +  + +H+A+ K   E+   L+  G +  A        +H A    +L++V  LL   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKLGDSGVEV 185
           AS   +   G TPL LA +EE     +     ++  ++  + K  ++  ++   G+ +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFL--VTQGASIYIENKEEKTPLQVAKGGLGL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  117 bits (295), Expect = 1e-32
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
            + A      +  +  ++++       D+ SRT LH A  +G TE+V +L +    V   
Sbjct: 11  CNLAYSGKLDELKE-RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                S +H A+  G  E+V+ L+  G  + A  + G  PLHYA   +  E+   LL  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGES 174
           A+  AK     T +  A  +     +        K + N ++  G +
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHIL--LFYKASTNIQDTEGNT 174

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 4e-25
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
              +LA      E+   +  +K+       D  +A+H+A   GH E+V  L+  GV +  
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS 159
               G +PLH A      E+VK LL KGA + A  + G TPL  A ++            
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML--L 126

Query: 160 SKKPNLNGKEKAGES 174
               N + K+    +
Sbjct: 127 EGGANPDAKDHYDAT 141

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
           N    LH AA     +    +L+    + +++D +  T +H AA  G  ++V  L   KA
Sbjct: 105 NGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
                  +  + +H A  +  +E  + LV+ G SI    ++   PL  A     L L+  
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILK 221

Query: 123 LLRKGA 128
            L +G 
Sbjct: 222 RLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.8 bits (194), Expect = 6e-18
 Identities = 17/76 (22%), Positives = 34/76 (44%)

Query: 69  MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
           + ++   + A      E+   +++         +     LH+A    H E+V++LL+ G 
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 129 SLTAKTKAGKTPLDLA 144
            +  K  AG +PL +A
Sbjct: 65  PVNDKDDAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
                +H AA  G+LK V  IL+    S N +D    TPLHLA    + E   +L    A
Sbjct: 138 YDATAMHRAAAKGNLKMVH-ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSI 97
            +     ++ + +  A   G L ++   ++ G   
Sbjct: 197 SIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  115 bits (289), Expect = 1e-31
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
              AAR  D +A+   L+ +   V++ D++ RT L   A  G  + V  L +  AD+   
Sbjct: 49  WWTAARKADEQALS-QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 68  AMDD-MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
            M   ++A+H A+     EVV  LV  G  I+    +GL  L  A +          ++ 
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

Query: 127 GASLTAKTKAGKTPLDLARNEEI 149
           G  +  +       +   +  E 
Sbjct: 167 GRRIGLE---KVINVLEGQVFEY 186

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.8 bits (247), Expect = 2e-25
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           L   A  G  K V+ +L      ++ RD +   T LH+AA   + EVV  L +  AD+  
Sbjct: 81  LLFVAGLGSDKCVR-LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                ++A+  A +          +  G  I     + +  +       + E+ + + ++
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDEIVEKR 196

Query: 127 GASLTAKTKA 136
           G     +   
Sbjct: 197 GKGKDVEYLV 206

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.4 bits (225), Expect = 4e-22
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           +           +    G +          ADV +   +  +    A++K   + +  L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL 65

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK-TKAGKTPLDLA 144
                + A    G   L +       + V+ L   GA L  +  + G T L +A
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 14/142 (9%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA     + V+  L+     +   D+   T L LA    +T       +    +G  
Sbjct: 115 LHMAAGYVRPEVVE-ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL- 172

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             + +  +       + EV   +   G        KG +  +        +         
Sbjct: 173 --EKVINVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWKDGGDCEWVKGVHV 222

Query: 128 ASLTAKTKAGKTPLDLARNEEI 149
           A   AK    +  L+ A  E +
Sbjct: 223 AEDVAKDY--EDGLEYAVAESV 242

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  110 bits (277), Expect = 6e-31
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR+G    V+ IL++N   VN++D++  TPL+LA   G  E+V  L KN ADV A 
Sbjct: 18  LLEAARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
                + +H A+  GHLE+   L+  G  + A  + G      ++   + +L + L 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  108 bits (272), Expect = 4e-30
 Identities = 39/105 (37%), Positives = 57/105 (54%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
             L  AA +GQ + V  L  N ADV A     ++ ++ A+  GHLE+V  L+ +G  + A
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
               G  PLH A    HLE+ + LL+ GA + A+ K GKT  D++
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 81.7 bits (203), Expect = 6e-20
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L+ A   G L+ V+ +L+ N   VN+ D    TPLHLAA+ G  E+   L K+ ADV A 
Sbjct: 51  LYLATAHGHLEIVE-VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVS 92
                +A   +   G+ ++   L  
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  108 bits (273), Expect = 6e-31
 Identities = 42/90 (46%), Positives = 56/90 (62%)

Query: 39  RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIK 98
           RTPLHLAA +G  EVV  L +  ADV A   +  + +H A++ GHLEVV+ L+ +G  + 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
           A  + G  PLH A +  HLE+VK LL  GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.9 bits (240), Expect = 7e-26
 Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 1/87 (1%)

Query: 8  LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
          LH AAR+G L+ V+ +L+     VN++DK+ RTPLHLAA +G  EVV  L +  ADV A 
Sbjct: 6  LHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 68 AMDDMSAIHFASQKGHLEVVRTLVSSG 94
            +  + +H A++ GHLEVV+ L+ +G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.5 bits (213), Expect = 7e-22
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query: 70  DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
           +  + +H A++ GHLEVV+ L+ +G  + A  + G  PLH A +  HLE+VK LL  GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 130 LTAKTKAGKTPLDLA 144
           + AK K G+TPL LA
Sbjct: 61  VNAKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 4e-11
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 8  LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
          LH AAR+G L+ V+ +L+     VN++DK+ RTPLHLAA +G  EVV  L +  A
Sbjct: 39 LHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (254), Expect = 8e-28
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 45  AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKG 104
            +        S L    + +G+   D    +  A++ G  + VR L+++G  + A  + G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 105 LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFLE 154
             PLH A +  HLE+VK LL  GA + A+ K GKT  D++    NE++   L+
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.8 bits (247), Expect = 7e-27
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 11  AARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD 70
            +           L+     + S        L  AA +GQ + V  L  N ADV A   +
Sbjct: 1   GSSHHHHHHSS-GLVPRGSHMGSDL---GKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 71  DMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
             + +H A++ GHLEVV+ L+ +G  + A  + G      ++   + +L + L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 80.7 bits (200), Expect = 7e-20
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AAR+G    V+ IL++N   V ++DK+  TPLHLAA +G  EVV  L +  ADV A 
Sbjct: 28  LLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 68  AMDDMSAIHFASQKGHLEVVRTL 90
                +A   +   G+ ++   L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  102 bits (257), Expect = 2e-27
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 18/171 (10%)

Query: 3   NREEELHAAARSGDLKAVQSILIS--NPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
           +    + AAA  G  +    +            +       L       + ++  +L   
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 61  KADVGAAAMDDMSAIHFASQKGH------LEVVRTLVSSGVSIKACTRKGLNPLHYAVQG 114
            AD+ +   +  +      Q G        E+ +  +  G  I A  +     +   +  
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 115 SHLELVK-------YLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFLEE 155
             ++  +          + G  L  K K G T L+  +          +E+
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 14/139 (10%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVS------YLCKNK 61
           L         K     LI+    + SR K   T        G  ++           +  
Sbjct: 46  LRNNNDEARYKISM-FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104

Query: 62  ADVGAAAMDDMSAIHFASQKGHLEVVRT-------LVSSGVSIKACTRKGLNPLHYAVQG 114
           AD+ A        +        ++              SG+ +    + GL  L +  + 
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 115 SHLELVKYLLRKGASLTAK 133
                +K +         K
Sbjct: 165 QKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 16/157 (10%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD---MSAIHFASQKGHLEVVR 88
           N+  ++    +  AA  G  E    L +   +   + +        +   + +   ++  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 89  TLVSSGVSIKACTRKGLNPLHYAVQGSH------LELVKYLLRKGASLTAKTKAGKTPLD 142
            L++ G  IK+ T++G        QG         EL K  L KGA +TA  K  K  + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 143 LA---RNEEIRSFLEEWEQ--SSKKPNLNGKEKAGES 174
                   +    +  ++   S     L  K+K G +
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT 156

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 7e-27
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 33/154 (21%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRD-------------KHSRTPLHLAAWSGQTEVV 54
           LH A     L+ V+ +L+ N   V+ R                   PL LAA + Q +VV
Sbjct: 94  LHIAIEKRSLQCVK-LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 55  SYLCKN---KADV----------------GAAAMDDMSAIHFASQKGHLEVVRTLVSSGV 95
           +YL +N    A +                 A    + SA+      G L++   L  +  
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

Query: 96  SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS 129
             +    +GL PL  A +   +E+ +++L++  S
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (256), Expect = 1e-26
 Identities = 28/183 (15%), Positives = 45/183 (24%), Gaps = 47/183 (25%)

Query: 8   LHAAA---RSGDLKAVQSILISNPL-----------SVNSRDKHSRTPLHLAAWSGQTEV 53
           L  A    + G    +   L+                         + LH+A      + 
Sbjct: 47  LMKAVLNLQDGVNACIM-PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

Query: 54  VSYLCKNKADVGAAAMDDMS-------------AIHFASQKGHLEVVRTLVSSGV----- 95
           V  L +N ADV   A                   +  A+     +VV  L+ +       
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 96  --------------SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
                          + A      + L   +    L++   L             G TPL
Sbjct: 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225

Query: 142 DLA 144
            LA
Sbjct: 226 KLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 50/193 (25%)

Query: 6   EELHAAARSGDLKAVQSILI-------SNPLSVNSRDKHSRTPLHLAAWS---GQTEVVS 55
           + L +    G  + +  +L            S  +     +T L  A  +   G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 56  YLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGS 115
            L +   D G                                     +G + LH A++  
Sbjct: 64  PLLQIDKDSGN----------------------PKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 116 HLELVKYLLRKGASLTAKT-------------KAGKTPLDLA---RNEEIRSFLEEWEQS 159
            L+ VK L+  GA +  +                G+ PL LA   +  ++ ++L   E  
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL--LENP 159

Query: 160 SKKPNLNGKEKAG 172
            +  +L   +  G
Sbjct: 160 HQPASLEATDSLG 172

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L      G L+     L          +    TPL LAA  G+ E+  ++ + +    AA
Sbjct: 192 LVIHMYDGLLQMGA-RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (254), Expect = 3e-26
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 38/175 (21%)

Query: 8   LHAAARSGDLKAVQSIL------ISNPLSVNSRDKHS-RTPLHLAAWS---GQTEVVSYL 57
           +  A    + + ++S+L               +D  + +T L  A  +   GQ + ++ L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 58  CKNKADVGAA-----------AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLN 106
                   +                 +A+H A ++ ++ +V  LV +G  ++A       
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 107 --------------PLHYAVQGSHLELVKYLLRKG---ASLTAKTKAGKTPLDLA 144
                         PL  A   + L +VK+LL+     A ++A+   G T L   
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 7e-25
 Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 41/170 (24%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS--------------RTPLHLAAWSGQTEV 53
           LH A    ++  V  +L+ N   V +                     PL LAA + Q  +
Sbjct: 105 LHIAIERRNMTLVT-LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 54  VSYLCKN---KADVGAAAMDDMSAIHFASQKGHLEVVRT----------------LVSSG 94
           V +L +N    AD+ A      + +H   +     V  T                L  + 
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
              +   RKGL PL  A     + ++ Y+L++                 A
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 95.6 bits (238), Expect = 6e-24
 Identities = 38/184 (20%), Positives = 56/184 (30%), Gaps = 48/184 (26%)

Query: 8   LHAA---ARSGDLKAVQSILISN-----------PLSVNSRDKHSRTPLHLAAWSGQTEV 53
           L  A     +G    +  +L+               S        +T LH+A       +
Sbjct: 58  LLKAMLNLHNGQNDTIA-LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 54  VSYLCKNKADVGAAAMDD--------------MSAIHFASQKGHLEVVRTLVSSGVS--- 96
           V+ L +N ADV AAA  D                 +  A+    L +V+ L+ +      
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 97  IKACTRKGLNPLHYAVQGSH----------------LELVKYLLRKGASLTAKTKAGKTP 140
           I A    G   LH  V+ +                 L L   L           + G TP
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 141 LDLA 144
           L LA
Sbjct: 237 LALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 41/186 (22%)

Query: 26  SNPLSVNSRDKHSRTPLHLAAWSGQT-------EVVSYLCKNKADVGAAAMDD-MSAIHF 77
           S          + R  +  A               +    K   D      +   + +  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 78  AS---QKGHLEVVRTLVSSG-----------VSIKACTRKGLNPLHYAVQGSHLELVKYL 123
           A      G  + +  L+               S      KG   LH A++  ++ LV  L
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 124 LRKGASLTAKTK--------------AGKTPLDLA---RNEEIRSFLEEWEQSSKKPNLN 166
           +  GA + A                  G+ PL LA       I  FL   + S +  +++
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL--LQNSWQPADIS 178

Query: 167 GKEKAG 172
            ++  G
Sbjct: 179 ARDSVG 184

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 22/91 (24%)

Query: 8   LHAAARSGDLKAVQSI---------------LISNPLSVNSRDKHSRTPLHLAAWSGQTE 52
           LHA     D     +                L          ++   TPL LAA SG+  
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247

Query: 53  VVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
           V++Y+ + +         +    H A+   H
Sbjct: 248 VLAYILQREI-------HEPECRHAAAHHHH 271

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 2e-25
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 3   NREEELHAAARSGDLKAVQSI--LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
             E     AA +G   A+ ++  L+++   V      +     LAA +G   V++ LC+ 
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 61  KADVGAA--AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLN---PLHYAVQGS 115
                 A    ++  A   A++ GHL V+  L     +      +  N       AV   
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 116 HLELVKYLLRKGASLTAK 133
           H  ++ +LL     L   
Sbjct: 211 HHNVINFLLDCPVMLAYA 228

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 92.3 bits (229), Expect = 5e-22
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 31  VNSRDKHSRTPLHLAAWSGQT---EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVV 87
            + +   S     +AA +G +   + +  L  +   V     ++  A   A++ GHL V+
Sbjct: 85  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 144

Query: 88  RTLVSSG--VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT--KAGKTPLDL 143
             L        +     +  +    A +  HL ++  L     +                
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204

Query: 144 A 144
           A
Sbjct: 205 A 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 25/201 (12%), Positives = 46/201 (22%), Gaps = 64/201 (31%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSR--TPLHLAAWS-GQTEVVSYL-----CK 59
              AA +G L  +   L     +  +    +        AA   G   V+++L       
Sbjct: 167 FRLAAENGHLHVLN-RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 60  NKADVGAAA-----------------MDDMSAIHFASQKGH------------------- 83
             A++                      +   A   ++  G                    
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 84  --------LEVVRTLVS-----SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL 130
                   L+ +R L+S     +              L  A++  +      LL   + L
Sbjct: 286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 345

Query: 131 TAKTK------AGKTPLDLAR 145
                           LDL  
Sbjct: 346 ALTKANNYYINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 2/115 (1%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
            +++      L    ++        L  +    G  +               L+ +  L+
Sbjct: 56  GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 115

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA--GKTPLDLA 144
           +S   +K    +       A +  HL ++  L     +               LA
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.1 bits (161), Expect = 7e-13
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 17/137 (12%)

Query: 1   MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQT---EVVSYL 57
             NR +E+H A +  +   V  ++  +              L            + + +L
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTKSE------CLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 58  C-----KNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV 112
                 K  A       D    +  A + G+      L+S    +        N  +   
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINE 357

Query: 113 QGSHLELVKYLLRKGAS 129
            G  L+L    L     
Sbjct: 358 TGGRLDLRAVALEHHHH 374

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 84.8 bits (210), Expect = 5e-20
 Identities = 29/147 (19%), Positives = 44/147 (29%), Gaps = 33/147 (22%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS--------------AIH 76
                   +T LH+A        V  L +  ADV A A                    + 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 77  FASQKGHLEVVRTLVSSGVS---IKACTRKGLNPLHYAVQGSH---------LELVKYLL 124
            A+      +V  L  +G     ++    +G   LH  V  +           ++   LL
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205

Query: 125 RKGASLTAKT-------KAGKTPLDLA 144
            K A L   T         G +PL +A
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMA 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.7 bits (202), Expect = 8e-19
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 34/155 (21%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS--------------RTPLHLAAWSGQTEV 53
           LH A        V+ +L+     V+++ +                  PL LAA + Q  +
Sbjct: 97  LHIAIERRCKHYVE-LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 54  VSYLCKN---KADVGAAAMDDMSAIHFASQKGH---------LEVVRTLVSSGVSIKACT 101
           V YL +N   +AD+        + +H                 ++   L+     +   T
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 102 -------RKGLNPLHYAVQGSHLELVKYLLRKGAS 129
                    GL+PL  A +   + + ++++R+  +
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 41/173 (23%)

Query: 39  RTPLHLAA----WSGQTEVVSYLCKNKADVGAAAMDDMS----AIHFA---SQKGHLEVV 87
           R  L          G   ++S+L  +K  +      + S     +  A      G  + +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 88  RTLVSSG-----------VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA 136
             L+                 +    +G   LH A++      V+ L+ KGA + A+ + 
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 137 --------------GKTPLDLA---RNEEIRSFLEEWEQSSKKPNLNGKEKAG 172
                         G+ PL LA       I  +L   E   K+ +L  ++  G
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL--TENGHKQADLRRQDSRG 176

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.5 bits (152), Expect = 7e-12
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 24/122 (19%)

Query: 8   LHAAARSGDLKAVQSILISNPLS---VNSRDKHSRTPLHLAAWSG---------QTEVVS 55
           L  AA +     V   L  N      +  +D    T LH                T++  
Sbjct: 144 LSLAACTNQPHIVH-YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 56  YLCKNKADVGAAAM-------DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL 108
            L    A +            D +S +  A++ G + + + ++   ++  A      +  
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA----HHHH 258

Query: 109 HY 110
           H+
Sbjct: 259 HH 260

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 83.5 bits (206), Expect = 4e-19
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 8   LHAAARSG---DLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTE------------ 52
           L  A +S    D    +++L      +   D  +RT LH    +                
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227

Query: 53  VVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC----TRKGLNPL 108
           ++ ++ K +     +  ++  +          + +   +     I          G   L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 109 HYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           + A +  ++ +V  LL  GA      K+G  P+D  
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.8 bits (191), Expect = 5e-17
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 19/188 (10%)

Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNS-RDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
            ++    +    L+ V     +  L++N   D+H  TPLH        E+V +L K+ ++
Sbjct: 97  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156

Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRT----LVSSGVSIKACTRKGLNPLHYAVQGSHLE- 118
                    S +  A +  +     T    L      +          LH+ +  S +  
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216

Query: 119 -----------LVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE--WEQSSKKPNL 165
                      L+ ++++K           K      +N E +  + E    +      L
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 166 NGKEKAGE 173
           N ++  G+
Sbjct: 277 NAQDSNGD 284

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 20  VQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS 79
           +   L S  ++ N +       L    +    E+ + L  + ++  +            S
Sbjct: 45  IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 104

Query: 80  QKGHL-EVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG 137
               L EV     ++ +++       G  PLH+    ++LELVK+L++ G++       G
Sbjct: 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164

Query: 138 KTPLDLA 144
           ++ L  A
Sbjct: 165 ESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 9   HAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA- 67
            +AA    L  +   ++           + +          + + +      K  +    
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 68  -AMDDM--SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ 113
            A D    + ++ A++ G++ +V  L+  G       + GL P+ +   
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.3 bits (169), Expect = 4e-14
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 8   LHAAARSGDLKAVQSI--LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH A RS D  ++  +  L+ N  +++ +     T LH    +   E +  L + KA + 
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSS 93
            A     + +  A +  H      L  +
Sbjct: 233 IANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 6   EELHAAARSGDLKAVQSILISN-----PLSVNSRDKHSRTPLHLAAWSGQT---EVVSYL 57
             L  A ++ D+  +             + + +  +   T LHLA  S       +V +L
Sbjct: 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 191

Query: 58  CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL 117
            +N  ++        +A+H+     + E ++ L+    SI+     G  PL  A +  H 
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251

Query: 118 ELVKYLLRKGAS 129
              + LL +  S
Sbjct: 252 HCEE-LLTQALS 262

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 9e-13
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 4/147 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSR--DKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           L  A+         +  +++   VN     + + TPL  A  +       +L +N A+V 
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
            A       +H A+  GH  +    +  G  + A   +G +PL  A++ ++ ++V  L  
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

Query: 126 KGASLTAKTKAGKTPLDLARNEEIRSF 152
             A +     A     D    +  R F
Sbjct: 323 --AKMREAEAAQGQAGDETYLDIFRDF 347

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 70  DDMSAIHFASQKGH---LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
            +   +H A +  +   L +V  ++ +G  + A    G   LHYA   +  + +K LL+ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 127 GASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLN 166
            A +    +AG+T LD+AR   ++E    LE+ +  +    L+
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 3e-12
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 8   LHAAARSGDLKAVQSI--LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH A +  +  ++  +  +I N   ++++     T LH AA   Q + +  L K +A VG
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSS 93
                  +A+  A +K H E    L  +
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 6   EELHAAARSGDLKAVQSIL-----ISNPLSVNSRDKHSRTPLHLAAWSG---QTEVVSYL 57
           + L  A  + DL +V            PL            LHLA          +V ++
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 58  CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHL 117
            +N   + A A D  +A+H+A+     + ++ L+     +      G   L  A +  H 
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272

Query: 118 ELVKYLLRKGAS 129
           E    LL +  +
Sbjct: 273 ECE-ELLEQAQA 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.98
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.98
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.98
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=9.4e-39  Score=239.15  Aligned_cols=159  Identities=38%  Similarity=0.550  Sum_probs=149.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL   84 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   84 (238)
                      .+.|+.||..|+.++|+.| +..|+++|.+|..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         5 g~~L~~Aa~~G~~~~v~~L-l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDL-IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHH-HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            3679999999999999954 578999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCC
Q 041573           85 EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPN  164 (238)
Q Consensus        85 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  164 (238)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..+..+++++|++.+++.+
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=7.3e-36  Score=222.62  Aligned_cols=160  Identities=33%  Similarity=0.430  Sum_probs=153.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      |.|.||||.|+..|+.++++.|+. .+.+++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         1 G~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            1 GANSLSVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             CTTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCcchHHHHHHCCCHHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            789999999999999999996664 4788999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+...
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             C
Q 041573          162 K  162 (238)
Q Consensus       162 ~  162 (238)
                      +
T Consensus       160 ~  160 (167)
T 3v31_A          160 K  160 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.5e-35  Score=221.51  Aligned_cols=165  Identities=26%  Similarity=0.360  Sum_probs=156.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.++||.||..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46789999999999999998888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+...+++.|++.+.+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCC
Q 041573          163 PNLNG  167 (238)
Q Consensus       163 ~~~~~  167 (238)
                      .+...
T Consensus       164 ~~~~~  168 (179)
T 3f6q_A          164 LNRIP  168 (179)
T ss_dssp             CSCBC
T ss_pred             cccCC
Confidence            86543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.5e-35  Score=221.93  Aligned_cols=162  Identities=32%  Similarity=0.388  Sum_probs=153.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      +.+|||.|+..|+.++++.++...+..++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            56899999999999999988877666689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888655


Q ss_pred             CC
Q 041573          164 NL  165 (238)
Q Consensus       164 ~~  165 (238)
                      ..
T Consensus       162 ~~  163 (172)
T 3v30_A          162 FQ  163 (172)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.8e-35  Score=236.44  Aligned_cols=168  Identities=25%  Similarity=0.314  Sum_probs=111.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD-------------------   63 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~-------------------   63 (238)
                      .|+||||+||..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|+++|+.                   
T Consensus        44 ~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  122 (282)
T 1oy3_D           44 LGQTALHLAAILGEASTVE-KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD  122 (282)
T ss_dssp             TSCCHHHHHHHHTCHHHHH-HHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcc
Confidence            3556666666666666665 33345566666666666666666666666666666655443                   


Q ss_pred             ----------------------------cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccC-CCcHHHHHHHC
Q 041573           64 ----------------------------VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYAVQG  114 (238)
Q Consensus        64 ----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~  114 (238)
                                                  ++..+..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence                                        4455556667777777777777777777777777777643 77777777777


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcC
Q 041573          115 SHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKA  171 (238)
Q Consensus       115 g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~  171 (238)
                      |+.+++++|+++|++++.+|..|+||||+|+..+..+++++|++.+.+++.....+.
T Consensus       203 ~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  259 (282)
T 1oy3_D          203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL  259 (282)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----
T ss_pred             CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccc
Confidence            777777777777777777777777777777777777777777777777665554443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=8.4e-35  Score=217.51  Aligned_cols=157  Identities=36%  Similarity=0.544  Sum_probs=150.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.++|+.||..|+.++|+.| ...+++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRIL-MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccchHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            468999999999999999955 4679999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|++.+
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=5.2e-35  Score=217.59  Aligned_cols=158  Identities=30%  Similarity=0.453  Sum_probs=149.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.++||.|+..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            47899999999999999998887788899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. +..+++++|++.++
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999887 77799999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=238.05  Aligned_cols=173  Identities=28%  Similarity=0.383  Sum_probs=117.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.||||.|+..++...+..+|...|+++|.+|.+|+||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..+
T Consensus        51 ~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           51 EFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG  130 (269)
T ss_dssp             ------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC
Confidence            46677888877776653333566777888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+..+++++|++.+.+
T Consensus       131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad  210 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS  210 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             CCCCCCCcCCccc
Q 041573          163 PNLNGKEKAGESE  175 (238)
Q Consensus       163 ~~~~~~~~~~~~~  175 (238)
                      ++.....+..+..
T Consensus       211 ~~~~d~~G~TpL~  223 (269)
T 4b93_B          211 VQVLNKRQRTAVD  223 (269)
T ss_dssp             SCCCCTTSCCSGG
T ss_pred             CCCcCCCCCCHHH
Confidence            7666555444433

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.8e-35  Score=224.37  Aligned_cols=157  Identities=20%  Similarity=0.220  Sum_probs=151.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.|+..|+.++++.|+ ..+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHH-HHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            6899999999999999999665 558899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|++.+
T Consensus       113 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=8.9e-35  Score=215.49  Aligned_cols=157  Identities=27%  Similarity=0.404  Sum_probs=149.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      ...|+||.|+..|+.++++.|+ ..+.+++.++..|.||||+|+. |+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            5689999999999999999555 6889999999999999999999 9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC-ccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS-LTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+..+++++|++.++
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999998 59999999999999999999999999998875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.3e-34  Score=223.50  Aligned_cols=165  Identities=27%  Similarity=0.355  Sum_probs=137.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.|+..|+.++++.|+ ..+++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            5778888888888888888444 567888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+
T Consensus       118 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             CCCCCC
Q 041573          163 PNLNGK  168 (238)
Q Consensus       163 ~~~~~~  168 (238)
                      ++....
T Consensus       198 ~~~~~~  203 (231)
T 3aji_A          198 IYIENK  203 (231)
T ss_dssp             SCCCCT
T ss_pred             CCCCCC
Confidence            655443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.2e-34  Score=228.67  Aligned_cols=167  Identities=25%  Similarity=0.314  Sum_probs=157.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|+||||+|+..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..
T Consensus        56 ~g~t~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  134 (253)
T 1yyh_A           56 TGETALHLAARYSRSDAAK-RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  134 (253)
T ss_dssp             TSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc
Confidence            6899999999999999999 5556799999999999999999999999999999999987 8999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.
T Consensus       135 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             TCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCc
Q 041573          162 KPNLNGKEK  170 (238)
Q Consensus       162 ~~~~~~~~~  170 (238)
                      +++.....+
T Consensus       215 ~~~~~d~~g  223 (253)
T 1yyh_A          215 NRDITDHMD  223 (253)
T ss_dssp             CTTCCCTTC
T ss_pred             CccccccCC
Confidence            876655444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.4e-34  Score=225.23  Aligned_cols=162  Identities=24%  Similarity=0.332  Sum_probs=151.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----CccccCCchHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV-----GAAAMDDMSAIHF   77 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~-----~~~~~~g~t~L~~   77 (238)
                      -|+||||.|+..|+.++++.|+...+++++.+|..|.||||+|+..|+.+++++|++.|+++     +..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            37999999999999999998887779999999999999999999999999999999999987     6777899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCcccccc-------------CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhh
Q 041573           78 ASQKGHLEVVRTLVSSGVSIKACTR-------------KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA  144 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A  144 (238)
                      |+..|+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998875             799999999999999999999999999999999999999999


Q ss_pred             cchhHHHHH----HHHHhhcCCCC
Q 041573          145 RNEEIRSFL----EEWEQSSKKPN  164 (238)
Q Consensus       145 ~~~~~~~~~----~~l~~~~~~~~  164 (238)
                      +..+..+++    ++|+..+....
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHcCChHHHHHHHHHHHhcCCchh
Confidence            988888777    88988887653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-34  Score=227.47  Aligned_cols=164  Identities=26%  Similarity=0.312  Sum_probs=143.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC------cCccccCCchHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD------VGAAAMDDMSAIH   76 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~------~~~~~~~g~t~L~   76 (238)
                      .|+||||+|+..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|++.|++      ++..+..|.||||
T Consensus        44 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIAE-ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-CCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            5789999999999999998 55577888998999999999999999999999999998876      4667778899999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccc-CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHH
Q 041573           77 FASQKGHLEVVRTLVSSGVSIKACTR-KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE  155 (238)
Q Consensus        77 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~  155 (238)
                      +|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHH
Confidence            99999999999999999999998887 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCC
Q 041573          156 WEQSSKKPNLNG  167 (238)
Q Consensus       156 l~~~~~~~~~~~  167 (238)
                      |++.+.++....
T Consensus       203 Ll~~ga~~~~~~  214 (236)
T 1ikn_D          203 LGQLTLENLQML  214 (236)
T ss_dssp             HHTTSCGGGSSC
T ss_pred             HHHcchhhhhcC
Confidence            998887664333

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-34  Score=210.51  Aligned_cols=151  Identities=26%  Similarity=0.392  Sum_probs=143.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      ..++||.|+..|+.++++.|+. .+.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            5789999999999999996664 466665 58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-34  Score=232.16  Aligned_cols=170  Identities=26%  Similarity=0.296  Sum_probs=155.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLS---VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   79 (238)
                      +|+||||+||..|+.++|+.|+ ..+.+   ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLL-GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHH-HHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            7899999999999999999666 44555   8899999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCC-----------------------------------------------ccccccCCCcHHHHHH
Q 041573           80 QKGHLEVVRTLVSSGVS-----------------------------------------------IKACTRKGLNPLHYAV  112 (238)
Q Consensus        80 ~~~~~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~g~t~L~~A~  112 (238)
                      ..|+.+++++|+++|++                                               ++..+..|.||||+|+
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  166 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHH
Confidence            99999999999998765                                               6778889999999999


Q ss_pred             HCCCHHHHHHHHhcCCCccccCCC-CCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCc
Q 041573          113 QGSHLELVKYLLRKGASLTAKTKA-GKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       113 ~~g~~~~~~~Ll~~g~~~~~~~~~-g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  173 (238)
                      ..|+.+++++|+++|++++..+.. |+||||+|+..+..+++++|++.+.+++.....+...
T Consensus       167 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (282)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence            999999999999999999999865 9999999999999999999999998887766554433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=3.5e-34  Score=211.05  Aligned_cols=154  Identities=25%  Similarity=0.405  Sum_probs=148.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      +.|+||.|+..|+.++++.|+...+.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57999999999999999988877677999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhh
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  159 (238)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..+..+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 99999999999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=232.00  Aligned_cols=157  Identities=29%  Similarity=0.406  Sum_probs=144.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+||..|+.++++ +|...+++++.++..|.||+|+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~-~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIP-LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHH-HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHH-HHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            6899999999999999999 555789999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhH-HHHHHHHHhhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEI-RSFLEEWEQSS  160 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~-~~~~~~l~~~~  160 (238)
                      +.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.++. .++++.+...+
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999987664 45555444433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-33  Score=219.71  Aligned_cols=166  Identities=25%  Similarity=0.320  Sum_probs=155.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~   81 (238)
                      +|+||||+|+..|+.++++.|+ ..+++++..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||+|+..
T Consensus        24 ~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  102 (223)
T 2f8y_A           24 TGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  102 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence            6899999999999999999555 6789999999999999999999999999999999987 8999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.
T Consensus       103 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  182 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCC
Q 041573          162 KPNLNGKE  169 (238)
Q Consensus       162 ~~~~~~~~  169 (238)
                      +++.....
T Consensus       183 ~~~~~~~~  190 (223)
T 2f8y_A          183 NRDITDHM  190 (223)
T ss_dssp             CTTCCCTT
T ss_pred             CCcccccc
Confidence            77655443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-33  Score=218.78  Aligned_cols=161  Identities=21%  Similarity=0.248  Sum_probs=155.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||.|+..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        57 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC
Confidence            58899999999999999997777666799999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|++.+..
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C
Q 041573          163 P  163 (238)
Q Consensus       163 ~  163 (238)
                      .
T Consensus       217 ~  217 (223)
T 2f8y_A          217 R  217 (223)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.4e-33  Score=217.86  Aligned_cols=168  Identities=24%  Similarity=0.283  Sum_probs=143.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCC--CCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCcCccccCCchHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNP--LSVNS-RDKHSRTPLHLAAWSGQTEVVSYLCKNK--ADVGAAAMDDMSAIHF   77 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~   77 (238)
                      +|+||||+|+..|+.++++.|+ ..+  .+++. .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~  113 (228)
T 2dzn_A           35 DGRIPLHWSVSFQAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL  113 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHH-HTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-hccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHH
Confidence            5788999999999999998554 555  56666 7788899999999999999999999988  8888888889999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC-CCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573           78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG-ASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      |+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..+..+++++|
T Consensus       114 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  193 (228)
T 2dzn_A          114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL  193 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 88999999999999999999999999998


Q ss_pred             H-hhcCCCCCCCCCcC
Q 041573          157 E-QSSKKPNLNGKEKA  171 (238)
Q Consensus       157 ~-~~~~~~~~~~~~~~  171 (238)
                      + +.+.+++.....+.
T Consensus       194 l~~~ga~~~~~~~~g~  209 (228)
T 2dzn_A          194 VEKYGAEYDLVDNKGA  209 (228)
T ss_dssp             HHHHCCCSCCBCTTSC
T ss_pred             HHhcCCCCCccCCCCC
Confidence            8 77877766554443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.8e-33  Score=215.51  Aligned_cols=170  Identities=22%  Similarity=0.270  Sum_probs=155.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.|+||.||..|+.+.++.+|...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            47899999999999999998888888899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-HCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC-CCccccCCCCCCHHHhhcchhH-----HHHHHH
Q 041573           83 HLEVVRTLV-SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG-ASLTAKTKAGKTPLDLARNEEI-----RSFLEE  155 (238)
Q Consensus        83 ~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~-----~~~~~~  155 (238)
                      +.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 677899999999999999999999999999999998 9999999999999999986554     899999


Q ss_pred             HHhhcCCCCCCCCCcCC
Q 041573          156 WEQSSKKPNLNGKEKAG  172 (238)
Q Consensus       156 l~~~~~~~~~~~~~~~~  172 (238)
                      |++.+.+++.....+..
T Consensus       164 Ll~~ga~~~~~~~~g~t  180 (201)
T 3hra_A          164 LMENGADQSIKDNSGRT  180 (201)
T ss_dssp             HHHTTCCTTCCCTTSCC
T ss_pred             HHHCCCCCCccCCCCCC
Confidence            99999888776655443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.9e-34  Score=225.21  Aligned_cols=161  Identities=21%  Similarity=0.254  Sum_probs=150.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+..|+.++++.|+...+.+++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~  168 (253)
T 1yyh_A           89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN  168 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            58899999999999999997776656699999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..++.+++++|......
T Consensus       169 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876654


Q ss_pred             C
Q 041573          163 P  163 (238)
Q Consensus       163 ~  163 (238)
                      +
T Consensus       249 ~  249 (253)
T 1yyh_A          249 H  249 (253)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.2e-33  Score=218.58  Aligned_cols=158  Identities=30%  Similarity=0.357  Sum_probs=152.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||.|+..|+.++++ +|...+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        72 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  150 (231)
T 3aji_A           72 AGWSPLHIAASAGXDEIVK-ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG  150 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCHHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            6899999999999999999 555779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+...++++|.+.+.
T Consensus       151 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-33  Score=227.13  Aligned_cols=168  Identities=23%  Similarity=0.270  Sum_probs=154.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|.|+||.||..|+.++|+.|+ ..|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            5789999999999999999655 568999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccc------------------------------------------------------------
Q 041573           83 HLEVVRTLVSSGVSIKACTR------------------------------------------------------------  102 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~------------------------------------------------------------  102 (238)
                      +.+++++|+++|++++..+.                                                            
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            99999999999998876553                                                            


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcC
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKA  171 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~  171 (238)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+++.....+.
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  266 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            477889999999999999999999999999999999999999999999999999999988766554443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.1e-33  Score=213.48  Aligned_cols=157  Identities=24%  Similarity=0.351  Sum_probs=149.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC-KNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      +|+||||.|+..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..
T Consensus        38 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  116 (201)
T 3hra_A           38 EGNTPLNIAVHNNDIEIAK-ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK  116 (201)
T ss_dssp             TSCCHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc
Confidence            6899999999999999999 555779999999999999999999999999999999 66889999999999999999999


Q ss_pred             CCHHHHHHHHHCC-CCccccccCCCcHHHHHHHCCC-----HHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHH
Q 041573           82 GHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSH-----LELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE  155 (238)
Q Consensus        82 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~  155 (238)
                      |+.+++++|++.| ++++.++..|+||||+|+..+.     .+++++|+++|++++.+|..|.||||+|+..+..+++++
T Consensus       117 ~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~  196 (201)
T 3hra_A          117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI  196 (201)
T ss_dssp             TCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence            9999999999999 9999999999999999999998     999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 041573          156 WEQSS  160 (238)
Q Consensus       156 l~~~~  160 (238)
                      |++++
T Consensus       197 Ll~~G  201 (201)
T 3hra_A          197 LAQYN  201 (201)
T ss_dssp             HHTCC
T ss_pred             HHhcC
Confidence            98764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5e-33  Score=218.52  Aligned_cols=164  Identities=27%  Similarity=0.383  Sum_probs=90.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHH---hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCc-------
Q 041573            3 NREEELHAAARSGDLKAVQSILI---SNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM-------   72 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-------   72 (238)
                      +|+||||.||..|+.++++.|+.   ..+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.       
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   87 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            34555555555555555554442   24455555555555555555555555555555555555555444444       


Q ss_pred             ------------------------------hHHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHCCCHHHHH
Q 041573           73 ------------------------------SAIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVK  121 (238)
Q Consensus        73 ------------------------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~~~  121 (238)
                                                    ||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.++++
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~  167 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  167 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence                                          55555555555555555555555555555 45566666666666666666


Q ss_pred             HHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCC
Q 041573          122 YLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLN  166 (238)
Q Consensus       122 ~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~  166 (238)
                      +|+++|++++.+|..|.||||+|+..+..+++++|++.+.+++..
T Consensus       168 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence            666666666666666666666666666666666666655554433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.1e-33  Score=217.07  Aligned_cols=167  Identities=27%  Similarity=0.389  Sum_probs=127.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.||..|+.+++++| ...|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHML-VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHH-HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHH-HHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence            577888888888888888744 4567777777777888888888888888888888888887777777778888888777


Q ss_pred             CHHHHHHHHHCC-CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+..+++++|++.+.
T Consensus        89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  168 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC  168 (237)
T ss_dssp             CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred             CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            777777777777 6777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             CCCCCCCCc
Q 041573          162 KPNLNGKEK  170 (238)
Q Consensus       162 ~~~~~~~~~  170 (238)
                      +++.....+
T Consensus       169 ~~~~~~~~g  177 (237)
T 3b7b_A          169 DLHAVNIHG  177 (237)
T ss_dssp             CTTCCCTTC
T ss_pred             CCCCcCCCC
Confidence            665554433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.1e-32  Score=216.25  Aligned_cols=168  Identities=28%  Similarity=0.373  Sum_probs=158.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|+||||.|+..|+.++++ +|...+++++.++..|.||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..
T Consensus        43 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  121 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVK-YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY  121 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHhCCHHHHH-HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc
Confidence            6889999999999999999 555789999999999999999999999999999999998 89999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.
T Consensus       122 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  201 (237)
T 3b7b_A          122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS  201 (237)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCcC
Q 041573          162 KPNLNGKEKA  171 (238)
Q Consensus       162 ~~~~~~~~~~  171 (238)
                      +++.....+.
T Consensus       202 d~~~~d~~g~  211 (237)
T 3b7b_A          202 DVTLKNKEGE  211 (237)
T ss_dssp             CTTCCCTTSC
T ss_pred             CCCccCCCCC
Confidence            8766554443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-32  Score=226.18  Aligned_cols=167  Identities=26%  Similarity=0.334  Sum_probs=133.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+..|+.++++. |...|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  135 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQL-LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKN  135 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHH-HHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            57788888888888888884 44668888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCC------------------------------------------------------------------
Q 041573           83 HLEVVRTLVSSGVS------------------------------------------------------------------   96 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~------------------------------------------------------------------   96 (238)
                      +.+++++|+++|++                                                                  
T Consensus       136 ~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L  215 (351)
T 3utm_A          136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL  215 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred             CHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence            77777777665544                                                                  


Q ss_pred             ------------------------ccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHH
Q 041573           97 ------------------------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSF  152 (238)
Q Consensus        97 ------------------------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  152 (238)
                                              ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..++
T Consensus       216 ~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~  295 (351)
T 3utm_A          216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT  295 (351)
T ss_dssp             HHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence                                    45566677888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhhcCCCCCCCCCc
Q 041573          153 LEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       153 ~~~l~~~~~~~~~~~~~~  170 (238)
                      +++|++.+.+++.....+
T Consensus       296 v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          296 CRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHcCCCCCCcCCCC
Confidence            888888877766555443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-32  Score=215.80  Aligned_cols=137  Identities=25%  Similarity=0.285  Sum_probs=124.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCc
Q 041573           31 VNSRDKHSRTPLHLAAWSGQTEVVSYLCK----NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLN  106 (238)
Q Consensus        31 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  106 (238)
                      ++.+|.+|.||||+||..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            35678999999999999999999999997    79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHhcCC----CccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCC
Q 041573          107 PLHYAVQGSHLELVKYLLRKGA----SLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNG  167 (238)
Q Consensus       107 ~L~~A~~~g~~~~~~~Ll~~g~----~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  167 (238)
                      |||+|+..|+.+++++|++.++    +++..+..|.||||+|+..+..+++++|++.+.+.+...
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD  146 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            9999999999999999999987    888899999999999999999999999999887776554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=224.65  Aligned_cols=160  Identities=20%  Similarity=0.272  Sum_probs=150.6

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHH-----HcCCHHHHHHHHHCCCCcCccccCCchHHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAA-----WSGQTEVVSYLCKNKADVGAAAMDDMSAIH   76 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~   76 (238)
                      .+|+||||+||..|+.++++.|+.....+++..+..|.||||+|+     ..++.+++++|++.|.+++..+..|.||||
T Consensus       109 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh  188 (276)
T 4hbd_A          109 SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALM  188 (276)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            368999999999999999996665444599999999999999999     668999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHh-cCCCccccCCCCCCHHHhhcchhHHHHHHH
Q 041573           77 FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR-KGASLTAKTKAGKTPLDLARNEEIRSFLEE  155 (238)
Q Consensus        77 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~  155 (238)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..+..+++++
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~  268 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM  268 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             HHhhcC
Q 041573          156 WEQSSK  161 (238)
Q Consensus       156 l~~~~~  161 (238)
                      |++...
T Consensus       269 Ll~~~~  274 (276)
T 4hbd_A          269 LYSRMN  274 (276)
T ss_dssp             HHHHCC
T ss_pred             HHhccC
Confidence            987753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.8e-32  Score=213.81  Aligned_cols=167  Identities=26%  Similarity=0.359  Sum_probs=152.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCcCc-cccCCchHHHHHHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK--ADVGA-AAMDDMSAIHFASQ   80 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~~~-~~~~g~t~L~~A~~   80 (238)
                      |+||||.||..|+.++++.|+...+...+..+..|.||||+|+..|+.+++++|++.|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5799999999999999998887766666668999999999999999999999999999  55555 77899999999999


Q ss_pred             cCCHHHHHHHHHCC--CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHh
Q 041573           81 KGHLEVVRTLVSSG--VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc-CCCCCCCCCc
Q 041573          159 SS-KKPNLNGKEK  170 (238)
Q Consensus       159 ~~-~~~~~~~~~~  170 (238)
                      .+ ...+.....+
T Consensus       162 ~g~~~~~~~d~~g  174 (228)
T 2dzn_A          162 LGKSAVNWQDKQG  174 (228)
T ss_dssp             TTCCCSCCCCTTS
T ss_pred             cCcccccCcCCCC
Confidence            88 6665554444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=222.47  Aligned_cols=160  Identities=26%  Similarity=0.335  Sum_probs=132.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.||..|+.++++.|+ ..+++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        58 ~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           58 SDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG  136 (285)
T ss_dssp             CSCCHHHHHHHTTCHHHHHHHH-HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT
T ss_pred             cCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            5788888888888888888444 567888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  215 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD  215 (285)
T ss_dssp             CHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC
Confidence            8888888888888877544 478888888888888888888888888888888888888888888888888888877766


Q ss_pred             CC
Q 041573          163 PN  164 (238)
Q Consensus       163 ~~  164 (238)
                      .+
T Consensus       216 ~~  217 (285)
T 3d9h_A          216 VN  217 (285)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=220.26  Aligned_cols=168  Identities=27%  Similarity=0.313  Sum_probs=155.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+|+..|+.++++ +|...+++++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC
Confidence            6899999999999999999 4556799999999999999999999999999999999999998654 5999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..+..+++++|++.+.+
T Consensus       169 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD  247 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999995 88999999999999999999999999888


Q ss_pred             CCCCCCCcCCc
Q 041573          163 PNLNGKEKAGE  173 (238)
Q Consensus       163 ~~~~~~~~~~~  173 (238)
                      .+.....+...
T Consensus       248 ~~~~d~~g~t~  258 (285)
T 3d9h_A          248 TQAKNAEGKRP  258 (285)
T ss_dssp             TTCCCTTSCCG
T ss_pred             CCCcCCCCCCH
Confidence            76665544433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.8e-34  Score=223.05  Aligned_cols=171  Identities=23%  Similarity=0.260  Sum_probs=155.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhC---CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISN---PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   79 (238)
                      +|+||||+|+..|+.++++.|+...   +.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            6899999999999999998666432   3479999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCC------ccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCC-CCCCHHHhhcchhHHHH
Q 041573           80 QKGHLEVVRTLVSSGVS------IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK-AGKTPLDLARNEEIRSF  152 (238)
Q Consensus        80 ~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~  152 (238)
                      ..|+.+++++|+..|++      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..+..++
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~  166 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  166 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999876      567788899999999999999999999999999999997 99999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCcCCc
Q 041573          153 LEEWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       153 ~~~l~~~~~~~~~~~~~~~~~  173 (238)
                      +++|++.+.+++.....+...
T Consensus       167 v~~Ll~~ga~~~~~~~~g~tp  187 (236)
T 1ikn_D          167 VSLLLKCGADVNRVTYQGYSP  187 (236)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCG
T ss_pred             HHHHHHcCCCCCcccCCCCCH
Confidence            999999998877665544333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-33  Score=224.20  Aligned_cols=160  Identities=24%  Similarity=0.226  Sum_probs=146.7

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHHHhCCCCcc-----------cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc
Q 041573            3 NREEELHAAARS---GDLKAVQSILISNPLSVN-----------SRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA   68 (238)
Q Consensus         3 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~-----------~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~   68 (238)
                      +|+||||+|+..   |+.++++.|+ ..+.+++           ..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  120 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLL-QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA  120 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHH-HHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHH-hcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            689999999999   9999999665 4444443           234679999999999999999999999999999998


Q ss_pred             cC-------------CchHHHHHHHcCCHHHHHHHHH---CCCCccccccCCCcHHHHHHH--CCCHH-------HHHHH
Q 041573           69 MD-------------DMSAIHFASQKGHLEVVRTLVS---SGVSIKACTRKGLNPLHYAVQ--GSHLE-------LVKYL  123 (238)
Q Consensus        69 ~~-------------g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~--~g~~~-------~~~~L  123 (238)
                      ..             |.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|
T Consensus       121 ~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~L  200 (256)
T 2etb_A          121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL  200 (256)
T ss_dssp             CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHH
Confidence            86             9999999999999999999999   999999999999999999999  88888       99999


Q ss_pred             HhcCCCc-------cccCCCCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573          124 LRKGASL-------TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus       124 l~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      +++|+++       +.+|..|+||||+|+..+..+++++|++++...
T Consensus       201 l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          201 LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            9999999       999999999999999999999999999887543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-32  Score=229.17  Aligned_cols=167  Identities=23%  Similarity=0.291  Sum_probs=117.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCc----------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGA----------------   66 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~----------------   66 (238)
                      +|+||||+||..|+.++|+.|+ ..|++++.++..|.||||+|+..|+.+++++|+++|++++.                
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~   97 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKT   97 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence            4677777777777777777444 55677777777777777777777777777777777665554                


Q ss_pred             ------------------------------------cccCCchHHHHHHHcC--CHHHHHHHHHCCCCccccccCCCcHH
Q 041573           67 ------------------------------------AAMDDMSAIHFASQKG--HLEVVRTLVSSGVSIKACTRKGLNPL  108 (238)
Q Consensus        67 ------------------------------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L  108 (238)
                                                          .+..|.||||+|+..|  +.+++++|+++|++++..|..|+|||
T Consensus        98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  177 (364)
T 3ljn_A           98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL  177 (364)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence                                                5556677777777777  77777777777777777777777777


Q ss_pred             HHHHHCCCHHHHHHHHhcCCC-----ccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCc
Q 041573          109 HYAVQGSHLELVKYLLRKGAS-----LTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       109 ~~A~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      |+|+..|+.+++++|+++|++     ++.+|..|.||||+|+..+..+++++|++.+.+++.....+
T Consensus       178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g  244 (364)
T 3ljn_A          178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH  244 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            777777777777777777666     67777777777777777777777777777666665544433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=6.8e-33  Score=222.32  Aligned_cols=161  Identities=25%  Similarity=0.250  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHHHhCCC-----------CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc
Q 041573            3 NREEELHAAARS---GDLKAVQSILISNPL-----------SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA   68 (238)
Q Consensus         3 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~-----------~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~   68 (238)
                      .|+||||+|+..   |+.++++.|+.. ++           .....|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~  131 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA  131 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccc
Confidence            689999999987   999999966644 32           222356789999999999999999999999999999999


Q ss_pred             c--------------CCchHHHHHHHcCCHHHHHHHHH---CCCCccccccCCCcHHHHHHHCCC---------HHHHHH
Q 041573           69 M--------------DDMSAIHFASQKGHLEVVRTLVS---SGVSIKACTRKGLNPLHYAVQGSH---------LELVKY  122 (238)
Q Consensus        69 ~--------------~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~~~~  122 (238)
                      .              .|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++
T Consensus       132 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~  211 (273)
T 2pnn_A          132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE  211 (273)
T ss_dssp             CSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence            7              79999999999999999999999   999999999999999999999998         899999


Q ss_pred             HHhcCCCcc-------ccCCCCCCHHHhhcchhHHHHHHHHHhhcC-CCC
Q 041573          123 LLRKGASLT-------AKTKAGKTPLDLARNEEIRSFLEEWEQSSK-KPN  164 (238)
Q Consensus       123 Ll~~g~~~~-------~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~-~~~  164 (238)
                      |+++|++++       .+|..|+||||+|+..+..+++++|++.+. ++.
T Consensus       212 Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred             HHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence            999999996       589999999999999999999999999998 443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.3e-32  Score=204.45  Aligned_cols=129  Identities=38%  Similarity=0.559  Sum_probs=119.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+|+..|+.++++ +|...+++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        36 ~g~t~l~~a~~~~~~~~~~-~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           36 DGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            6899999999999999999 555789999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA  132 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  132 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus       115 ~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999999999999999999999999999999999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.6e-33  Score=221.61  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=147.2

Q ss_pred             CchHHHHHHH---HcCCHHHHHHHHHhC----------CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-
Q 041573            3 NREEELHAAA---RSGDLKAVQSILISN----------PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-   68 (238)
Q Consensus         3 ~~~t~L~~A~---~~g~~~~v~~ll~~~----------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-   68 (238)
                      .|+||||+|+   ..|+.++++.|+...          ...++..|..|.||||+|+..|+.+++++|+++|++++..+ 
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  124 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR  124 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCE
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccc
Confidence            5999999999   779999999776431          24455566689999999999999999999999999999998 


Q ss_pred             -------------cCCchHHHHHHHcCCHHHHHHHHH---CCCCccccccCCCcHHHHHHHCCC---------HHHHHHH
Q 041573           69 -------------MDDMSAIHFASQKGHLEVVRTLVS---SGVSIKACTRKGLNPLHYAVQGSH---------LELVKYL  123 (238)
Q Consensus        69 -------------~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~~~~L  123 (238)
                                   ..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++++|
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~L  204 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL  204 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence                         589999999999999999999999   999999999999999999998887         7999999


Q ss_pred             HhcCCCc-------cccCCCCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573          124 LRKGASL-------TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus       124 l~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      +++|+++       +.+|..|.||||+|+..+..+++++|++++..+
T Consensus       205 l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999       789999999999999999999999999988654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.2e-33  Score=223.09  Aligned_cols=160  Identities=23%  Similarity=0.271  Sum_probs=145.9

Q ss_pred             chHHHHHHHHcCCHHHHHH---HHHhCCCCccc----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCcc------
Q 041573            4 REEELHAAARSGDLKAVQS---ILISNPLSVNS----RDKHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAA------   67 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~---ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~------   67 (238)
                      |+||||.||..|+.+.|+.   ++...+++++.    +|..|.||||+|+..   |+.+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            7899999999999985543   34467899998    899999999999999   9999999999998887643      


Q ss_pred             -----ccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccC-------------CCcHHHHHHHCCCHHHHHHHHh---c
Q 041573           68 -----AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-------------GLNPLHYAVQGSHLELVKYLLR---K  126 (238)
Q Consensus        68 -----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~g~~~~~~~Ll~---~  126 (238)
                           |..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 367999999999999999999999999999999886             9999999999999999999999   9


Q ss_pred             CCCccccCCCCCCHHHhhcc--hhHHH-------HHHHHHhhcCCC
Q 041573          127 GASLTAKTKAGKTPLDLARN--EEIRS-------FLEEWEQSSKKP  163 (238)
Q Consensus       127 g~~~~~~~~~g~tpl~~A~~--~~~~~-------~~~~l~~~~~~~  163 (238)
                      |++++.+|..|+||||+|+.  .+..+       ++++|++.+.+.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            99999999999999999997  66776       999999988776

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.9e-32  Score=217.86  Aligned_cols=157  Identities=29%  Similarity=0.442  Sum_probs=141.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcccc-------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM-------------   69 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-------------   69 (238)
                      +|.||||+||..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|+++|++++..+.             
T Consensus        72 ~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           72 DGLTALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             TCCBHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence            6899999999999999999 55568999999999999999999999999999999999999887654             


Q ss_pred             -----------------------------------------------CCchHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q 041573           70 -----------------------------------------------DDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR  102 (238)
Q Consensus        70 -----------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  102 (238)
                                                                     .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence                                                           466888999999999999999999999999999


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. ...++..+.+...
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~~  288 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQN  288 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHTT
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999764 4455555554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1e-31  Score=228.93  Aligned_cols=170  Identities=31%  Similarity=0.456  Sum_probs=149.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|.||||.|+..|+.++++ +|...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus       211 ~g~t~L~~A~~~~~~~~~~-~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  289 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVAR-SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG  289 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            5778888888888888888 444678888888888999999999999999999999999999988889999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+
T Consensus       290 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  369 (437)
T 1n11_A          290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  369 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCcCCc
Q 041573          163 PNLNGKEKAGE  173 (238)
Q Consensus       163 ~~~~~~~~~~~  173 (238)
                      ++.....+...
T Consensus       370 ~~~~~~~g~t~  380 (437)
T 1n11_A          370 PNEVSSDGTTP  380 (437)
T ss_dssp             SCCCCSSSCCH
T ss_pred             CCCCCCCCCCH
Confidence            87666555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.1e-33  Score=223.60  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+|+..|+.++++.| ...|++++..  +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        30 ~g~t~L~~A~~~g~~~~v~~L-l~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g  106 (285)
T 3kea_A           30 HGHSASYYAIADNNVRLVCTL-LNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG  106 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH-HHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHH-HhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence            355555555555555555532 2335555444  2555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHCCCCccccccCC-CcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKG-LNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..+..+++++|++.+.
T Consensus       107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga  185 (285)
T 3kea_A          107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMT  185 (285)
T ss_dssp             CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCC
Confidence            5555555555555555555555 45555555555444444444444433111 134444444444444444444444444


Q ss_pred             CCC
Q 041573          162 KPN  164 (238)
Q Consensus       162 ~~~  164 (238)
                      +++
T Consensus       186 d~n  188 (285)
T 3kea_A          186 STN  188 (285)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            333

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.98  E-value=8.3e-33  Score=217.99  Aligned_cols=163  Identities=22%  Similarity=0.260  Sum_probs=124.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.||||.|+..|+.+.++ .|+..|++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~-~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGS-ERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHH-HHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            5899999999999999998 555778888864 78899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCC-CHHHhh--cchhHHHHHHHHHhh
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGK-TPLDLA--RNEEIRSFLEEWEQS  159 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-tpl~~A--~~~~~~~~~~~l~~~  159 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..+..+++++|+..
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998887 999999  788899999999999


Q ss_pred             cCCCCCCC
Q 041573          160 SKKPNLNG  167 (238)
Q Consensus       160 ~~~~~~~~  167 (238)
                      +.+.+...
T Consensus       162 ~a~~~~~~  169 (239)
T 1ycs_B          162 QEKMGIMN  169 (239)
T ss_dssp             HHHTTTTG
T ss_pred             hhcccccc
Confidence            88776553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=2.1e-32  Score=221.21  Aligned_cols=163  Identities=20%  Similarity=0.158  Sum_probs=153.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCC-chHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~   81 (238)
                      +|+||||+|+..|+.++++ +|...|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..
T Consensus        61 ~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVK-ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence            5899999999999999999 5557799999999999999999999999999999999999999999999 7999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCH-HHhhcchhHHHHHHHHHhhc
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTP-LDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tp-l~~A~~~~~~~~~~~l~~~~  160 (238)
                      |+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..+..+++++|++.+
T Consensus       140 ~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          140 NDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             TCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             CCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999887433 288999999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCCCCC
Q 041573          161 KKPNLNG  167 (238)
Q Consensus       161 ~~~~~~~  167 (238)
                      .+++...
T Consensus       219 ad~~~~~  225 (285)
T 3kea_A          219 INIYSAN  225 (285)
T ss_dssp             BCSTTTT
T ss_pred             CCCCCCC
Confidence            8887665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=2.8e-32  Score=227.28  Aligned_cols=161  Identities=16%  Similarity=0.185  Sum_probs=145.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHh---CCCCccc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHC
Q 041573            3 NREEELHAAARSGDLKAVQSILIS---NPLSVNS-----------------RDKHSRTPLHLAAWSG--QTEVVSYLCKN   60 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~---~~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~~~~Ll~~   60 (238)
                      +|+||||+|+..|+.++++.|+..   .+.+++.                 .+..|.||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            466777777777777777755432   1555554                 7889999999999999  99999999999


Q ss_pred             CCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCC-----ccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCC
Q 041573           61 KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS-----IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK  135 (238)
Q Consensus        61 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~  135 (238)
                      |++++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999999999     999999999999999999999999999999999999999


Q ss_pred             CCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573          136 AGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus       136 ~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      .|.||||+|+..+..+++++|++.+...
T Consensus       243 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          243 EHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             TSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            9999999999999999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=1.8e-31  Score=227.36  Aligned_cols=167  Identities=37%  Similarity=0.471  Sum_probs=146.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.||..|+.++|++|+ ..+++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHH-HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence            6889999999999999999555 568899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..+..+++++|++.+..
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  171 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  171 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999998888888888888888888888888888888888877


Q ss_pred             CCCCCCCc
Q 041573          163 PNLNGKEK  170 (238)
Q Consensus       163 ~~~~~~~~  170 (238)
                      ++.....+
T Consensus       172 ~~~~~~~g  179 (437)
T 1n11_A          172 PNAAGKNG  179 (437)
T ss_dssp             TTCCCSSC
T ss_pred             CCCCCCCC
Confidence            66554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=6.2e-31  Score=210.96  Aligned_cols=164  Identities=27%  Similarity=0.294  Sum_probs=152.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccC----------CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcCccccCC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSR----------DKHSRTPLHLAAWSGQTEVVSYLCKN-KADVGAAAMDD   71 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g   71 (238)
                      .|+||||.|+..|+.++++ +|...+.+++..          +..|.||||+|+..|+.+++++|++. |++++..+..|
T Consensus       104 ~g~t~L~~A~~~~~~~~~~-~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  182 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALK-FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG  182 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHH-HHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTS
T ss_pred             ccCCHHHHHHHhCCHHHHH-HHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence            5789999999999999998 455678888877          77899999999999999999999998 99999999999


Q ss_pred             chHHHHHHHcCC----HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHh-cCCCccccCCCCCCHHHhhcc
Q 041573           72 MSAIHFASQKGH----LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR-KGASLTAKTKAGKTPLDLARN  146 (238)
Q Consensus        72 ~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~~  146 (238)
                      .||||+|+..++    .+++++|+++|++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.
T Consensus       183 ~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~  262 (285)
T 1wdy_A          183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH
Confidence            999999999999    999999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCCCC
Q 041573          147 EEIRSFLEEWEQSSKKPNLNG  167 (238)
Q Consensus       147 ~~~~~~~~~l~~~~~~~~~~~  167 (238)
                      .+..+++++|++.+.+++...
T Consensus       263 ~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          263 LKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             TTCHHHHHHHHHHSSCSCCSS
T ss_pred             cCcHHHHHHHHHcCCCCCccc
Confidence            999999999999998886543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=7e-31  Score=210.63  Aligned_cols=165  Identities=21%  Similarity=0.310  Sum_probs=136.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      +|+|+||.|+..|+.++++.|+ ..+.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            4778888888888888888554 567777777 67788888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCcccc----------CCCCCCHHHhhcchhHHH
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAK----------TKAGKTPLDLARNEEIRS  151 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~----------~~~g~tpl~~A~~~~~~~  151 (238)
                      |+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..+..+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            8888888888888888888888888888888888888888888888888777          677888888888888888


Q ss_pred             HHHHHHhh-cCCCCCCCC
Q 041573          152 FLEEWEQS-SKKPNLNGK  168 (238)
Q Consensus       152 ~~~~l~~~-~~~~~~~~~  168 (238)
                      +++.|+.. +...+....
T Consensus       163 ~v~~Ll~~~~~~~~~~~~  180 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDN  180 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCT
T ss_pred             HHHHHHHhcCCCCCccCC
Confidence            88888876 655554443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=4e-33  Score=211.73  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=141.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQT----EVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      ++++|+.||..|+++.++.++...   ++..+ ..|+||||+|+..|+.    +++++|+++|++++.++..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            568899999999999998777543   34455 6799999999999975    599999999999999999999999999


Q ss_pred             HHcCC------HHHHHHHHHCCCCccccccCCC-cHHHHHHHCCC-----HHHHHHHHh-cCCCccccCCCCCCHHHhhc
Q 041573           79 SQKGH------LEVVRTLVSSGVSIKACTRKGL-NPLHYAVQGSH-----LELVKYLLR-KGASLTAKTKAGKTPLDLAR  145 (238)
Q Consensus        79 ~~~~~------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~-----~~~~~~Ll~-~g~~~~~~~~~g~tpl~~A~  145 (238)
                      +..++      .+++++|+++|++++.+|..|+ ||||+|+..+.     .+++++|++ +|++++.+|..|+||||+|+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            99887      6889999999999999999999 99999999553     569999999 99999999999999999999


Q ss_pred             chhHHHHHHHHHhhcCCCCC
Q 041573          146 NEEIRSFLEEWEQSSKKPNL  165 (238)
Q Consensus       146 ~~~~~~~~~~l~~~~~~~~~  165 (238)
                      ..+...++++|..+..+.+.
T Consensus       163 ~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          163 RCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             TTTCHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHHhc
Confidence            99999999999877755443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=2.3e-31  Score=222.80  Aligned_cols=167  Identities=22%  Similarity=0.295  Sum_probs=154.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK---ADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~   79 (238)
                      .|+||||+|+..|+.++|+ +|...|++++.++..|.||||+|+..|+.+++++|++.|   ++++..+..|.||||+|+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~-~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVA-YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHH-HHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHH-HHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence            6899999999999999999 555779999999999999999999999999999999998   899999999999999999


Q ss_pred             HcC---CHHHHHHHHHCCCCccc--------cccCCCcHHHHHHHCCCHHHHHHHHhcC-CCccccCCCCCCHHHhhcch
Q 041573           80 QKG---HLEVVRTLVSSGVSIKA--------CTRKGLNPLHYAVQGSHLELVKYLLRKG-ASLTAKTKAGKTPLDLARNE  147 (238)
Q Consensus        80 ~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~tpl~~A~~~  147 (238)
                      ..+   +.+++++|+++|++++.        .+..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence            998   89999999999999986        5678999999999999999999999886 99999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCc
Q 041573          148 EIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       148 ~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      +..+++++|++.+.+.+.....+
T Consensus       324 g~~~iv~~Ll~~gad~~~~d~~g  346 (373)
T 2fo1_E          324 GRIEVVMYLIQQGASVEAVDATD  346 (373)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             CCHHHHHHHHHcCCCccCCCCCC
Confidence            99999999999988876655443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=5.6e-31  Score=217.23  Aligned_cols=160  Identities=22%  Similarity=0.259  Sum_probs=146.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ----TEVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      .|.||||+|+..|+.++|+.||.+.|++++.++..|.|+|++++..+.    ..++++|+++|++++.++..|+||||+|
T Consensus       167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a  246 (337)
T 4g8k_A          167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  246 (337)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            578999999999999999988878899999999999999999887654    4688999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573           79 SQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus        79 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                      +..|+.+++++|+.. |++++.+|..|+||||+|+..|+.++|++|+++|++++.+     +||++|+..+..+++++|+
T Consensus       247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence            999999999999985 8999999999999999999999999999999999998754     5999999999999999999


Q ss_pred             hhcCCCCCCC
Q 041573          158 QSSKKPNLNG  167 (238)
Q Consensus       158 ~~~~~~~~~~  167 (238)
                      +.++++++..
T Consensus       322 ~~GA~~d~~~  331 (337)
T 4g8k_A          322 SHGAKEDFHP  331 (337)
T ss_dssp             HTTCCC----
T ss_pred             HCcCCCCCCC
Confidence            9999987643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.3e-32  Score=216.66  Aligned_cols=163  Identities=21%  Similarity=0.291  Sum_probs=145.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHH---hCCCCcc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCc-------C
Q 041573            3 NREEELHAAARSGDLKAVQSILI---SNPLSVN----SRDKHSRTPLHLAAWS---GQTEVVSYLCKNKADV-------G   65 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~----~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-------~   65 (238)
                      .|+|+||.||..|+.++|+.||.   ..+.+++    ..+..|.||||+|+..   |+.+++++|++.|+++       +
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            68999999999999999987775   4666665    4578999999999987   9999999999998653       2


Q ss_pred             c----cccCCchHHHHHHHcCCHHHHHHHHHCCCCcccccc--------------CCCcHHHHHHHCCCHHHHHHHHh--
Q 041573           66 A----AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR--------------KGLNPLHYAVQGSHLELVKYLLR--  125 (238)
Q Consensus        66 ~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------~g~t~L~~A~~~g~~~~~~~Ll~--  125 (238)
                      .    .+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+++++|++  
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2    566899999999999999999999999999999997              79999999999999999999999  


Q ss_pred             -cCCCccccCCCCCCHHHhhcchhH---------HHHHHHHHhhcCCCCC
Q 041573          126 -KGASLTAKTKAGKTPLDLARNEEI---------RSFLEEWEQSSKKPNL  165 (238)
Q Consensus       126 -~g~~~~~~~~~g~tpl~~A~~~~~---------~~~~~~l~~~~~~~~~  165 (238)
                       +|++++.+|..|+||||+|+..+.         .+++++|+..+.+.+.
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence             999999999999999999997665         7889999998877653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.5e-31  Score=192.77  Aligned_cols=133  Identities=24%  Similarity=0.245  Sum_probs=126.6

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccC-CCc
Q 041573           28 PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLN  106 (238)
Q Consensus        28 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t  106 (238)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |+|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            56788999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          107 PLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       107 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999998775

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.7e-30  Score=214.46  Aligned_cols=132  Identities=31%  Similarity=0.431  Sum_probs=124.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.++||.||..|+.+.|+.+|...+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence            36799999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT  134 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~  134 (238)
                      +.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            9999999999999999999999999999999999999998888877765443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=6.5e-32  Score=199.24  Aligned_cols=141  Identities=19%  Similarity=0.286  Sum_probs=117.1

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCch-HHHHHHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS-AIHFASQ   80 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~   80 (238)
                      ..|.|+||.|+..|+.++++.|+ ..+++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+.
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            46899999999999999999555 668999999999999999986 89999999999999999999999999 9999999


Q ss_pred             cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhh
Q 041573           81 KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA  144 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A  144 (238)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999998744

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=7.9e-31  Score=205.41  Aligned_cols=166  Identities=24%  Similarity=0.301  Sum_probs=115.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      .|.||||.|+..|+.++++.|+ ..+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus        41 ~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  119 (240)
T 3eu9_A           41 ENVTLLHWAAINNRIDLVKYYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF  119 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHhCCHHHHHHHH-HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            4667777777777777777444 444444433 34477777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC-HHHHHHHHhcCCCccccCC-CCCCHHHhhcchhHHHHHHHHHhh
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH-LELVKYLLRKGASLTAKTK-AGKTPLDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~~~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~l~~~  159 (238)
                      |+.+++++|+++|++++..+..|.||||+|+..+. .+++++|++.|++++..+. .|.||||+|+..+..+++++|++.
T Consensus       120 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (240)
T 3eu9_A          120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA  199 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            77777777777777777777777777777775444 6677777777777777665 677777777777777777777777


Q ss_pred             cCCCCCCCCC
Q 041573          160 SKKPNLNGKE  169 (238)
Q Consensus       160 ~~~~~~~~~~  169 (238)
                      +.+++.....
T Consensus       200 g~~~~~~~~~  209 (240)
T 3eu9_A          200 GANVDAQNIK  209 (240)
T ss_dssp             TCCTTCBCTT
T ss_pred             CCCCCCcCCC
Confidence            6665544443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=5e-31  Score=220.76  Aligned_cols=159  Identities=23%  Similarity=0.362  Sum_probs=147.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCcCc--------cc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNP---LSVNSRDKHSRTPLHLAAWSG---QTEVVSYLCKNKADVGA--------AA   68 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~~~--------~~   68 (238)
                      .|.||||+|+..|+.++++.|+ ..+   .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d  276 (373)
T 2fo1_E          198 SERSALHQAAANRDFGMMVYML-NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  276 (373)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHT-TSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             CCCCHHHHHHHCCCHHHHHHHH-hcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence            6889999999999999999555 445   789999999999999999998   89999999999999986        56


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcch
Q 041573           69 MDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNE  147 (238)
Q Consensus        69 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~  147 (238)
                      ..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..
T Consensus       277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc
Confidence            78999999999999999999999876 99999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCC
Q 041573          148 EIRSFLEEWEQSSKK  162 (238)
Q Consensus       148 ~~~~~~~~l~~~~~~  162 (238)
                      +..+++++|++.+.+
T Consensus       357 g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          357 NHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TCHHHHHHHHTTC--
T ss_pred             CCHHHHHHHHhcCcc
Confidence            999999999987754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-31  Score=220.67  Aligned_cols=165  Identities=19%  Similarity=0.113  Sum_probs=108.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC---
Q 041573            8 LHAAARSGDLKAVQSILISNPLSVNS-RDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH---   83 (238)
Q Consensus         8 L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---   83 (238)
                      +|.|+..+..++++ +|...|+++|. +|..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+   
T Consensus       101 ~~~a~~~~~~~~~~-~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          101 QHVSFDSLLQEVND-AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             ---CHHHHHHHHHH-HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred             hHHHHHhhHHHHHH-HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence            35555555555554 55566666666 66666777777777777777777777777766666666677777766666   


Q ss_pred             HHHHHHHHHCC-CCccccccCCCcHHHHHHH----CCCHHHHHHHHhcCC------------------------------
Q 041573           84 LEVVRTLVSSG-VSIKACTRKGLNPLHYAVQ----GSHLELVKYLLRKGA------------------------------  128 (238)
Q Consensus        84 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~g~~~~~~~Ll~~g~------------------------------  128 (238)
                      .++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.++                              
T Consensus       180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~  259 (327)
T 1sw6_A          180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  259 (327)
T ss_dssp             TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence            45555555554 5566666666777777666    666666666665532                              


Q ss_pred             ---------------CccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCc
Q 041573          129 ---------------SLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       129 ---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  173 (238)
                                     +++.+|..|+||||+|+..+..+++++|++.+.+++.....+..+
T Consensus       260 t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             ChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence                           467778888888888888888888888888887776665554433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.97  E-value=1e-30  Score=188.52  Aligned_cols=133  Identities=29%  Similarity=0.409  Sum_probs=122.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcH
Q 041573           28 PLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP  107 (238)
Q Consensus        28 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  107 (238)
                      |+++ .+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4566 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          108 LHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       108 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      ||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..++++++.+...
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999988765543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.4e-31  Score=211.70  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=143.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHH---hCCCCcccCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC---------
Q 041573            3 NREEELHAAARSGDLKAVQSILI---SNPLSVNSRD----KHSRTPLHLAA---WSGQTEVVSYLCKNKAD---------   63 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~~~~Ll~~g~~---------   63 (238)
                      -++++||.||..|+.+.|+.|+.   ..+.+++..+    ..|.||||+|+   ..|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            37899999999999997665554   5788888665    77999999999   67999999999998744         


Q ss_pred             --cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc--------------cCCCcHHHHHHHCCCHHHHHHHHh--
Q 041573           64 --VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT--------------RKGLNPLHYAVQGSHLELVKYLLR--  125 (238)
Q Consensus        64 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~g~~~~~~~Ll~--  125 (238)
                        ++..|..|+||||+|+..|+.+++++|+++|++++..+              ..|+||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              44555689999999999999999999999999999998              589999999999999999999999  


Q ss_pred             -cCCCccccCCCCCCHHHhhcchhH---------HHHHHHHHhhcCCCC
Q 041573          126 -KGASLTAKTKAGKTPLDLARNEEI---------RSFLEEWEQSSKKPN  164 (238)
Q Consensus       126 -~g~~~~~~~~~g~tpl~~A~~~~~---------~~~~~~l~~~~~~~~  164 (238)
                       +|++++.+|..|+||||+|+..+.         .+++++|+..+.+.+
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence             999999999999999999995444         688999999987763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=7.7e-30  Score=199.79  Aligned_cols=165  Identities=24%  Similarity=0.295  Sum_probs=141.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcccc-CCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM-DDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~   81 (238)
                      .|.++|+.|+..|+.++++.|+ ..+++++..+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             ccchHHHHHHHcCChHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            4678899999999999998544 57788888888999999999999999999999999988876554 488999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhH-HHHHHHHHhhc
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEI-RSFLEEWEQSS  160 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~-~~~~~~l~~~~  160 (238)
                      |+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+. ..++++|...+
T Consensus        87 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  166 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN  166 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999985554 77888888888


Q ss_pred             CCCCCCCC
Q 041573          161 KKPNLNGK  168 (238)
Q Consensus       161 ~~~~~~~~  168 (238)
                      ...+....
T Consensus       167 ~~~~~~~~  174 (240)
T 3eu9_A          167 VSVNLGDK  174 (240)
T ss_dssp             CCTTCCCT
T ss_pred             CCcchhhc
Confidence            77766554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3e-30  Score=193.02  Aligned_cols=137  Identities=18%  Similarity=0.244  Sum_probs=125.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+..|+.++++.|+ ..+++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           35 RGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            6899999999999999999555 678999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTP  140 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tp  140 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999887

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.8e-30  Score=187.15  Aligned_cols=126  Identities=22%  Similarity=0.396  Sum_probs=120.9

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccC-CchHHHHHHH
Q 041573            2 GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-DMSAIHFASQ   80 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~   80 (238)
                      ..|.||||.|+..|+.++++.|+ ..+++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |.||||+|+.
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHH-HcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            36899999999999999999555 6689999999999999999999 9999999999999999999999 9999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           81 KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999985

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=7.1e-32  Score=211.44  Aligned_cols=139  Identities=21%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      ++.|+||.|+..|+.++++.|+ ..+++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g   98 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN   98 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhHHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            3445555555555555555333 334455555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHCCCCccccc-cCCCcHHHHH--HHCCCHHHHHHHHhcCCCccccCCCCCCHHH
Q 041573           83 HLEVVRTLVSSGVSIKACT-RKGLNPLHYA--VQGSHLELVKYLLRKGASLTAKTKAGKTPLD  142 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~  142 (238)
                      +.+++++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||++
T Consensus        99 ~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           99 DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            5555555555555555543 3555555555  5555555555555554444444444444444

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=3.3e-29  Score=180.52  Aligned_cols=123  Identities=30%  Similarity=0.437  Sum_probs=72.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      +.|+||.||..|+.++++.| ...+.+++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus        14 ~~t~l~~A~~~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRIL-MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHhCCHHHHHHH-HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            45566666666666666533 33455555555556666666666666666666666666666555566666666666666


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG  127 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  127 (238)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666666655556666666666666666666665544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=3.6e-29  Score=177.14  Aligned_cols=126  Identities=44%  Similarity=0.684  Sum_probs=106.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.|+..|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            5788888888888888888555 457788888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88888888888888888888888888888888888888888888875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=8.6e-29  Score=204.14  Aligned_cols=163  Identities=23%  Similarity=0.309  Sum_probs=108.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccC-----------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDK-HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-----------   70 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-----------   70 (238)
                      .|.|+||.||..|++++|+.|| ..|+++|.++. .|+||||+|+..|+.+++++|+++|++++..+..           
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL-~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            3689999999999999999555 67999998875 5999999999999999999999999887665544           


Q ss_pred             ----------------------CchHHHHHHHcCCHHHHHHHHHCCCCcccc----------ccCCCcHHHHHHHCCCHH
Q 041573           71 ----------------------DMSAIHFASQKGHLEVVRTLVSSGVSIKAC----------TRKGLNPLHYAVQGSHLE  118 (238)
Q Consensus        71 ----------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~g~~~  118 (238)
                                            |.||||+|+..|+.+++++|+.+|++++..          +..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                                  555555555555555555555555555432          223455555555555555


Q ss_pred             HHHHHHh-cCCCccccCCCCCCHHHhhc----chhHHHHHHHHHhhcCCCCCC
Q 041573          119 LVKYLLR-KGASLTAKTKAGKTPLDLAR----NEEIRSFLEEWEQSSKKPNLN  166 (238)
Q Consensus       119 ~~~~Ll~-~g~~~~~~~~~g~tpl~~A~----~~~~~~~~~~l~~~~~~~~~~  166 (238)
                      ++++|+. .|++++.+|..|.||++.++    ......++++|++.+.+++..
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~  235 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  235 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc
Confidence            5555553 35555555555555555443    122334455555555554443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.4e-30  Score=208.12  Aligned_cols=167  Identities=20%  Similarity=0.203  Sum_probs=150.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHh-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcCccccCCchHHHHHH--
Q 041573            4 REEELHAAARSGDLKAVQSILIS-NPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA-DVGAAAMDDMSAIHFAS--   79 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~--   79 (238)
                      +++++|.|+..|+.+.++.++.. ....+|.+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            35678899999999999866532 122388899999999999999999999999999998 99999999999999999  


Q ss_pred             ---HcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573           80 ---QKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus        80 ---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                         ..++.+++++|+..|.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..+++++|
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence               56889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hh-hcCCCCCCCCCc
Q 041573          157 EQ-SSKKPNLNGKEK  170 (238)
Q Consensus       157 ~~-~~~~~~~~~~~~  170 (238)
                      +. .+.+.+.....+
T Consensus       236 l~~~gad~~~~d~~g  250 (276)
T 4hbd_A          236 LAVPSCDISLTDRDG  250 (276)
T ss_dssp             HTSTTCCTTCCCTTS
T ss_pred             HhcCCCCCcCcCCCC
Confidence            98 777776655443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.1e-29  Score=191.80  Aligned_cols=140  Identities=21%  Similarity=0.318  Sum_probs=133.2

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHH
Q 041573           30 SVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLH  109 (238)
Q Consensus        30 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  109 (238)
                      .+|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCC
Q 041573          110 YAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKE  169 (238)
Q Consensus       110 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~  169 (238)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+++.....
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  166 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLT  166 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            999999999999999999999999999999999999999999999999998877655433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=6.2e-30  Score=210.54  Aligned_cols=145  Identities=18%  Similarity=0.138  Sum_probs=133.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHCC-CCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ---TEVVSYLCKNK-ADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A   78 (238)
                      +|+||||+||..|+.++|+ +|+..|++++.+|..|+||||+|+..|+   .++++.|++.+ ++++.++..|+||||+|
T Consensus       130 ~g~TpLh~Aa~~g~~~~v~-~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  208 (327)
T 1sw6_A          130 HGNTPLHWLTSIANLELVK-HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  208 (327)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHH
Confidence            6899999999999999999 5557799999999999999999999998   78888888886 78999999999999999


Q ss_pred             HH----cCCHHHHHHHHHCCC---------------------------------------------CccccccCCCcHHH
Q 041573           79 SQ----KGHLEVVRTLVSSGV---------------------------------------------SIKACTRKGLNPLH  109 (238)
Q Consensus        79 ~~----~~~~~~v~~Ll~~g~---------------------------------------------~~~~~~~~g~t~L~  109 (238)
                      +.    .|+.+++++|++.+.                                             +++.+|..|+||||
T Consensus       209 ~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh  288 (327)
T 1sw6_A          209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  288 (327)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHH
Confidence            99    899999999998743                                             57888899999999


Q ss_pred             HHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchh
Q 041573          110 YAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE  148 (238)
Q Consensus       110 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  148 (238)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus       289 ~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999999999999999999998754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=2.5e-29  Score=181.11  Aligned_cols=126  Identities=32%  Similarity=0.456  Sum_probs=120.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHC
Q 041573           35 DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQG  114 (238)
Q Consensus        35 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  114 (238)
                      ...+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573          115 SHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus       115 g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      |+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999998754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=7.3e-30  Score=188.22  Aligned_cols=138  Identities=23%  Similarity=0.239  Sum_probs=121.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCc-HHHH
Q 041573           32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLN-PLHY  110 (238)
Q Consensus        32 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~  110 (238)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|+| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345678999999999999999999999999999999999999999986 89999999999999999999999999 9999


Q ss_pred             HHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCc
Q 041573          111 AVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       111 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+++.....+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  144 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR  144 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCc
Confidence            999999999999999999999999999999999999999999999999988876655443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1.1e-28  Score=174.57  Aligned_cols=125  Identities=41%  Similarity=0.632  Sum_probs=122.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH  116 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  116 (238)
                      +|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          117 LELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       117 ~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      .+++++|+++|++++.+|..|.|||++|+..+..+++++|++.+.
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999998875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.96  E-value=6.4e-29  Score=175.89  Aligned_cols=120  Identities=28%  Similarity=0.394  Sum_probs=112.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHC
Q 041573           35 DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQG  114 (238)
Q Consensus        35 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  114 (238)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573          115 SHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus       115 g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                      |+.+++++|+++|++++.+|..|.||||+|...+..++++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll~  123 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ  123 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHhC
Confidence            9999999999999999999999999999998888877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.4e-28  Score=180.70  Aligned_cols=125  Identities=23%  Similarity=0.275  Sum_probs=118.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||.|+. |+.++++. |...+++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        37 ~g~t~L~~A~~-~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  114 (162)
T 1ihb_A           37 FGRTALQVMKL-GNPEIARR-LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG  114 (162)
T ss_dssp             TSCCHHHHCCS-SCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCccHHHHHHc-CcHHHHHH-HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            68999999999 99999994 55679999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCC-ccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           83 HLEVVRTLVSSGVS-IKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      +.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       115 ~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999998 599999999999999999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.5e-28  Score=185.00  Aligned_cols=134  Identities=28%  Similarity=0.358  Sum_probs=127.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||.|+..|+.++++ +|...+++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        38 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~  116 (179)
T 3f6q_A           38 HGFSPLHWACREGRSAVVE-MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG  116 (179)
T ss_dssp             TSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            6889999999999999999 555779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAG  137 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  137 (238)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++..+..+
T Consensus       117 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            9999999999999999999999999999999999999999999999998876554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=3.8e-29  Score=197.02  Aligned_cols=146  Identities=21%  Similarity=0.233  Sum_probs=133.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.|+||.|+..|+.++++ +|...+.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        36 ~~~t~L~~A~~~g~~~~v~-~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQ-RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHH-HHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            4689999999999999999 555778899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCC-cHHHHH--HHCCCHHHHHHHHhcCCCcccc---------CCCCCCHHHhhcchhH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGL-NPLHYA--VQGSHLELVKYLLRKGASLTAK---------TKAGKTPLDLARNEEI  149 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~g~~~~~~~Ll~~g~~~~~~---------~~~g~tpl~~A~~~~~  149 (238)
                      +.+++++|+++|++++..+..|. ||||+|  +..|+.+++++|+.+|++++..         +..+.+|++++...+.
T Consensus       115 ~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             CHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999999999999999998877 999999  7889999999999999988776         5668888888866553

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.9e-28  Score=180.62  Aligned_cols=133  Identities=17%  Similarity=0.234  Sum_probs=127.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH  116 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  116 (238)
                      .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCC
Q 041573          117 LELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKE  169 (238)
Q Consensus       117 ~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~  169 (238)
                      .+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.+++.....
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  134 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS  134 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            99999999999999999999999999999999999999999988877665443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=192.68  Aligned_cols=145  Identities=21%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             HHhCCCCcccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCcccc
Q 041573           24 LISNPLSVNSR---DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC  100 (238)
Q Consensus        24 l~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  100 (238)
                      |+..+.+++..   +..+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++.+
T Consensus         4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~   83 (229)
T 2vge_A            4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP   83 (229)
T ss_dssp             ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            33455565544   456678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC-CCCCCHHHhh--cchhHHHHHHHHHhhcCCCCCCCC
Q 041573          101 TRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT-KAGKTPLDLA--RNEEIRSFLEEWEQSSKKPNLNGK  168 (238)
Q Consensus       101 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~tpl~~A--~~~~~~~~~~~l~~~~~~~~~~~~  168 (238)
                      |..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..+..+++++|++.+.+.+....
T Consensus        84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            9999999999999999999999999999999997 6999999999  999999999999999988766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.96  E-value=3.1e-28  Score=184.14  Aligned_cols=138  Identities=25%  Similarity=0.331  Sum_probs=126.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-cCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-MDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~   81 (238)
                      .|+||||.|+..|+.++++.|+.  +.+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            57899999999999999996665  88999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhh
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  159 (238)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.                 ..+.+||++|+..+..++++.|...
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999999999999875322                 4578999999999999999998754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.3e-27  Score=178.41  Aligned_cols=124  Identities=33%  Similarity=0.483  Sum_probs=118.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|.||||.|+..|+.++++.| ...+++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        46 ~g~t~L~~A~~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  124 (169)
T 2y1l_E           46 SGWTPLHLAAFNGHLEIVEVL-LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG  124 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHH-HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            689999999999999999955 4679999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG  127 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  127 (238)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       125 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=7.8e-28  Score=190.13  Aligned_cols=140  Identities=26%  Similarity=0.331  Sum_probs=129.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccc-cCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAA-MDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~   81 (238)
                      .|.||||.|+..|+.++++.||.  +.++|.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            57899999999999999996665  89999999999999999999999999999999999999998 7899999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+.+++++|+++|++++.+|..|+||||+|+..+                 ....+.|||++|+..+..+++++|.....
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            9999999999999999999999999999998632                 23568999999999999999999988643

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=1.1e-28  Score=192.06  Aligned_cols=136  Identities=24%  Similarity=0.320  Sum_probs=117.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHC-CCCccccccCCCcHHHHHHH
Q 041573           35 DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQ  113 (238)
Q Consensus        35 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~  113 (238)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCc
Q 041573          114 GSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       114 ~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      .|+.+++++|+++|++++.+|..|.|||++|+..++.++++.++..+..........
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999999999999999999999999999999999999999998888776555433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-27  Score=175.42  Aligned_cols=120  Identities=31%  Similarity=0.483  Sum_probs=115.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.||||.|+..|+.++++ +|...+++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        33 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           33 LGTSPLHLAAQYGHFSTTE-VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHH-HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            5889999999999999999 455789999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL  123 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~L  123 (238)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus       112 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.6e-28  Score=179.88  Aligned_cols=124  Identities=27%  Similarity=0.377  Sum_probs=116.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+..|+.++++ +|...+++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        41 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  119 (165)
T 3twr_A           41 RQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG  119 (165)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcChHHHHH-HHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence            5789999999999999999 555779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA  128 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~  128 (238)
                      +.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus       120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999999999999877 99999999999886

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=3.7e-28  Score=197.70  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=118.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCccc------CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCccccCCchH
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNS------RDKHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAAAMDDMSA   74 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~   74 (238)
                      ..++|+.|+..|+.+.++.|+ ..+.+++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            457799999999999998655 77888887      688899999999987   88999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHH
Q 041573           75 IHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR  150 (238)
Q Consensus        75 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  150 (238)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..+..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999999998876      578999999876653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=4.4e-28  Score=188.64  Aligned_cols=135  Identities=23%  Similarity=0.279  Sum_probs=113.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcCccccCCchHHHHHHHc
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN-KADVGAAAMDDMSAIHFASQK   81 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   81 (238)
                      +|.|+||.||..|+.++++.|+ ..+++++.+|..|.||||+||..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            5789999999999999999555 68899999999999999999999999999999999 999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCC
Q 041573           82 GHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGK  138 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~  138 (238)
                      |+.+++++|+++|++++.+|..|.||||+|+..|..++++.|+..|+.....+..|.
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            999999999999999999999999999999999999999999999999988776654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=8.6e-27  Score=171.34  Aligned_cols=121  Identities=26%  Similarity=0.352  Sum_probs=116.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||. +..|+.++++.| ...|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        35 ~g~t~L~~-~~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  112 (156)
T 1bd8_A           35 FGKTALQV-MMFGSTAIALEL-LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG  112 (156)
T ss_dssp             TSCCHHHH-SCTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             CCCcHHHH-HHcCCHHHHHHH-HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC
Confidence            68999999 999999999954 4779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK  126 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  126 (238)
                      +.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       113 ~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          113 HTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             hHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999 99999999999999999999999999999874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=4.3e-28  Score=183.94  Aligned_cols=131  Identities=18%  Similarity=0.133  Sum_probs=118.5

Q ss_pred             CchHHHHHHHHcCCH----HHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC------HHHHHHHHHCCCCcCccccCCc
Q 041573            3 NREEELHAAARSGDL----KAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ------TEVVSYLCKNKADVGAAAMDDM   72 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~~~~Ll~~g~~~~~~~~~g~   72 (238)
                      .|+||||+|+..|+.    ++++ +|+..|+++|.++..|+||||+|+..|+      .+++++|+++|++++.+|..|.
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~-~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISM-FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHH-HHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             CCCCHHHHHHHcCCcchHHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            489999999999985    4777 6668899999999999999999999987      6889999999999999999999


Q ss_pred             -hHHHHHHHcCC-----HHHHHHHHH-CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccC
Q 041573           73 -SAIHFASQKGH-----LEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKT  134 (238)
Q Consensus        73 -t~L~~A~~~~~-----~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~  134 (238)
                       ||||+|+..+.     .+++++|+. +|++++.+|..|.||||+|+..|+.+++++|..+...++.++
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence             99999999543     569999999 999999999999999999999999999999998866665554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=6e-28  Score=173.99  Aligned_cols=125  Identities=31%  Similarity=0.430  Sum_probs=114.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||.|+..|+.++++.| ...+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   87 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYL-LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG   87 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHH-HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHH-HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcC
Confidence            689999999999999999955 4679999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA  128 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~  128 (238)
                      +.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999988888888776654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=5.3e-27  Score=165.98  Aligned_cols=110  Identities=27%  Similarity=0.385  Sum_probs=104.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|.|+||.|+..|+.++++.|+ ..+.+++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            5789999999999999999554 678999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQ  113 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  113 (238)
                      +.+++++|+++|++++.+|..|.||||+|..
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999999999999999943

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=6.6e-26  Score=188.81  Aligned_cols=142  Identities=22%  Similarity=0.284  Sum_probs=98.8

Q ss_pred             chHHHHHHHHc-CCHHHHHHHHHhCCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHH
Q 041573            4 REEELHAAARS-GDLKAVQSILISNPLSVNSRD--KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQ   80 (238)
Q Consensus         4 ~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   80 (238)
                      +.++||.|+.. |+.++++.| +..|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~L-L~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADA-LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHH-HHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHH-HHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            45678888888 888888744 46777888777  778888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcC---CCccccCCCCCCHHHhhcc
Q 041573           81 KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG---ASLTAKTKAGKTPLDLARN  146 (238)
Q Consensus        81 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~g~tpl~~A~~  146 (238)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+.++   ++....+..+.|+++++..
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            88888888888888888888888888888888888888888887764   3334455667777776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=3.8e-26  Score=172.62  Aligned_cols=115  Identities=29%  Similarity=0.354  Sum_probs=109.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCcHHHHHHH
Q 041573           35 DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQ  113 (238)
Q Consensus        35 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~  113 (238)
                      +..|.||||+|+..|+.++++.|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3578999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             CCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHH
Q 041573          114 GSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR  150 (238)
Q Consensus       114 ~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~  150 (238)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+..
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence            9999999999999999999999999999999875443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=1.1e-25  Score=181.08  Aligned_cols=124  Identities=26%  Similarity=0.287  Sum_probs=64.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcC------ccccCCchHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCcHH
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADVG------AAAMDDMSAIHFASQK---GHLEVVRTLVSSGVSIKACTRKGLNPL  108 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L  108 (238)
                      ..++|+.|+..|+.+.+..++..|++++      ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            3345555555555555555555555422      2244455555555554   455555555555555555555555555


Q ss_pred             HHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          109 HYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       109 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            55555555555555555555555555555555555555555555555555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.1e-27  Score=200.11  Aligned_cols=152  Identities=17%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---CccccCCchHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLS---VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV---GAAAMDDMSAIH   76 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~   76 (238)
                      +++||||.|+..|+.++|+.|+ ..+..   .+..+..|.||||+|+..|+.+++++|+++|+++   +..+.. .||||
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll-~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLC-LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHT-TC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHH-HcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            4679999999999999999555 55542   2234456889999999999999999999999862   333333 89999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccc--cccCCCcHHHHHH-HCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHH
Q 041573           77 FASQKGHLEVVRTLVSSGVSIKA--CTRKGLNPLHYAV-QGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL  153 (238)
Q Consensus        77 ~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~  153 (238)
                      +|+..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.++|++|++.|+       .|.|||++|+..+..+++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHH
Confidence            99999999999999999999988  8889999999999 9999999999999875       288999999999999999


Q ss_pred             HHHHhhcCCC
Q 041573          154 EEWEQSSKKP  163 (238)
Q Consensus       154 ~~l~~~~~~~  163 (238)
                      ++|.+.+...
T Consensus       242 ~lL~~~ga~~  251 (376)
T 2aja_A          242 PFIARHVNRL  251 (376)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhcCccc
Confidence            9999887543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.8e-25  Score=148.73  Aligned_cols=93  Identities=45%  Similarity=0.710  Sum_probs=83.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCC
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH  116 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  116 (238)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 041573          117 LELVKYLLRKGAS  129 (238)
Q Consensus       117 ~~~~~~Ll~~g~~  129 (238)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=1.5e-24  Score=174.49  Aligned_cols=124  Identities=19%  Similarity=0.297  Sum_probs=115.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCC------cccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCccccCCchHH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLS------VNSRDKHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAAAMDDMSAI   75 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~------~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~L   75 (238)
                      .++|+.|+..|+.+.++.++ ..+.+      ++..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll-~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAY-ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHH-HhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            46899999999999998555 55666      445578999999999999   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           76 HFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        76 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999984

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.9e-25  Score=176.47  Aligned_cols=110  Identities=30%  Similarity=0.402  Sum_probs=106.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc-cCCCcHHHHHHHC
Q 041573           36 KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQG  114 (238)
Q Consensus        36 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~  114 (238)
                      ..|.||||+|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468999999999999999999999 99999999999999999999999999999999999999998 7899999999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHhhcc
Q 041573          115 SHLELVKYLLRKGASLTAKTKAGKTPLDLARN  146 (238)
Q Consensus       115 g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~  146 (238)
                      |+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999974

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=1.2e-25  Score=157.04  Aligned_cols=110  Identities=35%  Similarity=0.489  Sum_probs=103.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHH
Q 041573           32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA  111 (238)
Q Consensus        32 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  111 (238)
                      ..+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHhcCCCccccCCCCCCHH
Q 041573          112 VQGSHLELVKYLLRKGASLTAKTKAGKTPL  141 (238)
Q Consensus       112 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl  141 (238)
                      +..|+.+++++|+++|++++.++..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999999999999884

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=5.7e-25  Score=183.16  Aligned_cols=127  Identities=21%  Similarity=0.272  Sum_probs=120.9

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHCCCCcCccc--cCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           36 KHSRTPLHLAAWS-GQTEVVSYLCKNKADVGAAA--MDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        36 ~~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      ..+.|+||+|+.. |+.++++.|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            4566899999999 99999999999999999998  88999999999999999999999999999999999999999999


Q ss_pred             HCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573          113 QGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       113 ~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|+..+..
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999887743

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=175.47  Aligned_cols=125  Identities=26%  Similarity=0.297  Sum_probs=119.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcCc------cccCCchHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCcHH
Q 041573           38 SRTPLHLAAWSGQTEVVSYLCKNKADVGA------AAMDDMSAIHFASQK---GHLEVVRTLVSSGVSIKACTRKGLNPL  108 (238)
Q Consensus        38 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L  108 (238)
                      +.++|+.|+..|+.+.++.|+..|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34679999999999999999999999998      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573          109 HYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       109 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|++.+..
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999988765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=141.12  Aligned_cols=93  Identities=44%  Similarity=0.679  Sum_probs=87.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+||||+|+..|+.++++ +|...+++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHH-HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            5899999999999999999 555789999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCC
Q 041573           83 HLEVVRTLVSSGVS   96 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~   96 (238)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=2.3e-23  Score=145.33  Aligned_cols=105  Identities=35%  Similarity=0.507  Sum_probs=98.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      +|+|+||.||..|+.++++ +|...+++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+
T Consensus         8 ~g~t~L~~A~~~~~~~~~~-~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVK-KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHH-HHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence            6899999999999999999 555779999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPL  108 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L  108 (238)
                      +.+++++|+++|++++.++..|.||-
T Consensus        87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=4.7e-24  Score=178.20  Aligned_cols=146  Identities=14%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             HHHHHHHH-cCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---CccccCCchHHHHHHHc
Q 041573            6 EELHAAAR-SGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV---GAAAMDDMSAIHFASQK   81 (238)
Q Consensus         6 t~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~   81 (238)
                      ++++.|.. .++.+.++.++ ..+.       ++.||||+|+..|+.+++++|++.|+..   +..+..|.||||+|+..
T Consensus        67 l~~~~a~~~~~~~~~~~~l~-~~g~-------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAH-KKGI-------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHH-HHTC-------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHH-HcCC-------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            45666665 35566666443 3333       4569999999999999999999999832   23455688999999999


Q ss_pred             CCHHHHHHHHHCCCCc---cccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccc--cCCCCCCHHHhhc-chhHHHHHHH
Q 041573           82 GHLEVVRTLVSSGVSI---KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA--KTKAGKTPLDLAR-NEEIRSFLEE  155 (238)
Q Consensus        82 ~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~--~~~~g~tpl~~A~-~~~~~~~~~~  155 (238)
                      |+.++|++|+++|+++   +..+.. +||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|..+++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~  217 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF  217 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence            9999999999999863   333333 8999999999999999999999999987  8999999999999 9999999999


Q ss_pred             HHhhc
Q 041573          156 WEQSS  160 (238)
Q Consensus       156 l~~~~  160 (238)
                      |++.+
T Consensus       218 Ll~~g  222 (376)
T 2aja_A          218 LLDCP  222 (376)
T ss_dssp             HTTSH
T ss_pred             HHhCC
Confidence            98755

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.86  E-value=1.7e-21  Score=134.93  Aligned_cols=92  Identities=28%  Similarity=0.419  Sum_probs=69.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHH
Q 041573           32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYA  111 (238)
Q Consensus        32 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  111 (238)
                      ...+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+.+|++++.+|..|+||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34456777788888888888888888877777777777777888888877777788877777777777777777888888


Q ss_pred             HHCCCHHHHHHH
Q 041573          112 VQGSHLELVKYL  123 (238)
Q Consensus       112 ~~~g~~~~~~~L  123 (238)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=7.3e-21  Score=131.74  Aligned_cols=93  Identities=31%  Similarity=0.424  Sum_probs=85.7

Q ss_pred             cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHh
Q 041573           64 VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL  143 (238)
Q Consensus        64 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~  143 (238)
                      +...+..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHH
Q 041573          144 ARNEEIRSFLEEW  156 (238)
Q Consensus       144 A~~~~~~~~~~~l  156 (238)
                      |+..+..+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-21
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-18
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-11
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 3e-31
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 37/196 (18%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A+  G L  V+  L+    S N  +    TPLH+AA +G TEV  YL +NKA V A 
Sbjct: 4   LHVASFMGHLPIVK-NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSS---------------------------------G 94
           A DD + +H A++ GH  +V+ L+ +                                  
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRS 151
            S    T+KG  PLH A +   + + + LL + A   A  K G TPL +A    N +I  
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 152 FLEEWEQSSKKPNLNG 167
            L     S   P  NG
Sbjct: 183 LLLPRGGSPHSPAWNG 198

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 2e-29
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+ G  + V  +L     + N  +K   TPLHL A  G   V   L K+   V A 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
                + +H AS  G++++V+ L+     + A T+ G +PLH A Q  H ++V  LL+ G
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFLEEWEQSSKKPNLNGKEKAGESETK 177
           AS    +  G TPL +A+      +   L+     +    ++ K +    ET 
Sbjct: 354 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 406

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 3e-26
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 37/196 (18%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AAR+G  +  +  L+ N   VN++ K  +TPLH AA  G T +V  L +N A+   A
Sbjct: 37  LHMAARAGHTEVAK-YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 95

Query: 68  AMDDM---------------------------------SAIHFASQKGHLEVVRTLVSSG 94
                                                 + +H A++ G + V   L+   
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR---NEEIRS 151
               A  + GL PLH AV  ++L++VK LL +G S  +    G TPL +A      E+  
Sbjct: 156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 215

Query: 152 FLEEWEQSSKKPNLNG 167
            L ++  S+   ++ G
Sbjct: 216 SLLQYGGSANAESVQG 231

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 2e-23
 Identities = 36/129 (27%), Positives = 58/129 (44%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
           TPLH+A++ G   +V  L +  A    + +   + +H A++ GH EV + L+ +   + A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS 159
             +    PLH A +  H  +VK LL   A+    T AG TPL +A  E     +    + 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 160 SKKPNLNGK 168
                   K
Sbjct: 122 EASQACMTK 130

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-21
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 72  MSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLT 131
           ++ +H AS  GHL +V+ L+  G S      K   PLH A +  H E+ KYLL+  A + 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 132 AKTKAGKTPLDLA---RNEEIRSFLEEW 156
           AK K  +TPL  A    +  +   L E 
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 3e-21
 Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+ G ++  + +L+      N+  K+  TPLH+A      ++V  L        + 
Sbjct: 136 LHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           A +  + +H A+++  +EV R+L+  G S  A + +G+ PLH A Q  H E+V  LL K 
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 128 ASLTAKTKAGKTPLDLAR---NEEIRSFL 153
           A+     K+G TPL L     +  +   L
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 3e-20
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +L  V+ +L+    S +S   +  TPLH+AA   Q EV   L +      A 
Sbjct: 169 LHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
           ++  ++ +H A+Q+GH E+V  L+S   +     + GL PLH   Q  H+ +   L++ G
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 287

Query: 128 ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKE 169
             + A T+ G TPL +A +      ++   Q     N   K 
Sbjct: 288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 329

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 3e-19
 Identities = 41/139 (29%), Positives = 63/139 (45%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTL 90
                K   TPLH+AA  G+  V   L +  A   AA  + ++ +H A    +L++V+ L
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 91  VSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIR 150
           +  G S  +    G  PLH A + + +E+ + LL+ G S  A++  G TPL LA  E   
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

Query: 151 SFLEEWEQSSKKPNLNGKE 169
             +          NL  K 
Sbjct: 245 EMVALLLSKQANGNLGNKS 263

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-16
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
           L+    S N+      TPLHLAA  G  E+V+ L   +A+        ++ +H  +Q+GH
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276

Query: 84  LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDL 143
           + V   L+  GV + A TR G  PLH A    +++LVK+LL+  A + AKTK G +PL  
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 336

Query: 144 A---RNEEIRSFLEEWEQSSKKPNLNGK 168
           A    + +I + L +   S  + + +G 
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGT 364

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 5e-27
 Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 68/216 (31%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTE--------------- 52
           +   A SG L+ ++  ++++       D+ SRT LH A  +G TE               
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 53  ------------------VVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
                             +V  L    A V A   +  + +H+A+ K   E+   L+  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 95  VSIKACTRKGLNPLHYAVQGSH---------------------------------LELVK 121
            +  A        +H A    +                                 +E  K
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 122 YLLRKGASLTAKTKAGKTPLDLARN--EEIRSFLEE 155
            L+ +GAS+  + K  KTPL +A+     I   + E
Sbjct: 187 LLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 42/137 (30%)

Query: 75  IHFASQKGHLEVVR-TLVSSGVSIKACTRKGLNPLHYAVQG------------------- 114
           +   +  G LE ++ ++++         +     LH+A                      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 115 --------------SHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEWE 157
                            E+VK LL KGA + A  + G TPL  A      EI   L E  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-- 124

Query: 158 QSSKKPNLNGKEKAGES 174
                 N + K+    +
Sbjct: 125 ---GGANPDAKDHYEAT 138

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 7e-24
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQT----EVVSYLCKNKAD 63
           L  AA  G ++ ++ +L      VN+ D   R  L  A  S        +   L  + AD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 64  VGAAAMDDMSAIHFASQKGHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           V        + +  A +K HL +V+ L+    + I      G   L  AV+    ++ + 
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 123 LLRKGASLTAK 133
           L ++GAS    
Sbjct: 272 LCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 1e-20
 Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNK-ADVGAA----AMDDMSAIHFASQKGHLE 85
                K   T L  AA  G  EV+  L     ADV A         + A+  +       
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 86  VVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLDLA 144
           +   L+  G  +     +G  PL  AV+  HL LV+ LL ++   +      GKT L LA
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 145 ---RNEEIRSFL 153
              + ++I   L
Sbjct: 261 VELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 48/214 (22%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHS-RTPLHLAAWSGQTEVVSYLCKNKADVGA 66
           L  A ++ D+  VQ  L+    +VN +++    TPLH A    + ++V  L ++ AD   
Sbjct: 9   LIKAVQNEDVDLVQ-QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC-------------------------- 100
              +  +    A+  G +++++  +S G  +  C                          
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 101 -----------------TRKGLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLD 142
                             + G   L  A +  H+E++K LL   GA + A    G+  L 
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 143 LARNEEIRSFLEEWEQS--SKKPNLNGKEKAGES 174
            A      S +E           ++N + + G++
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 6e-12
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRK-GLNPLHYAVQGSHLELVKYLL 124
           AA++D   +  A Q   +++V+ L+  G ++     + G  PLH AVQ S  ++V+ LL
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM----------DDMSAIHFASQK 81
           N  D +  T    AA  G+ + + +L K  A+V                  +A+  A++K
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 82  GHLEVVRTLVSS-GVSIKACTRKGLNPLHYAV----QGSHLELVKYLLRKGASLTAKTKA 136
           GH+EV++ L+   G  + AC   G N L +A+          +   LL  GA +  + + 
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218

Query: 137 GKTPLDLA----RNEEIRSFLEEWEQSSKKPNLNGK 168
           GKTPL LA        ++  LE+        + +GK
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHFASQKGHLEVVRTLVSSGVSIK 98
             L  A  +   ++V  L +  A+V     +   + +H A Q    ++V  L+  G    
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 99  ACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
              + G  P   A     ++L+K  L KGA +      G T    A
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 88.2 bits (217), Expect = 2e-21
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLV 91
           N +                 +   +L     +    A    +A+H A+ KG+ EV++ L+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 92  SSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRS 151
            +   +      G  PLH A      E  + L+     + A  K G+T  D+A +E+I  
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA-DEDILG 278

Query: 152 FLEEWEQSSKKPNL 165
           +LEE +   KK NL
Sbjct: 279 YLEELQ---KKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.5 bits (202), Expect = 2e-19
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
            G   E          L+  +  L S  ++     K   T LH+AA  G TEV+  L + 
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELV 120
           + DV     D  + +H A+  G  E  R LV +   ++A  + G      A +    +++
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DIL 277

Query: 121 KYLL 124
            YL 
Sbjct: 278 GYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 34  RDKHSRTPLHLAAWSG-QTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS 92
            D   +    L  W G +T++   + K K        DD +    A   G  E V  L+ 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 93  SGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
            G  I      GL  LH A    ++++VK+
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 4/154 (2%)

Query: 3   NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKA 62
            R E+L     S     ++  ++    +    D         A  SG TE V  L +  A
Sbjct: 9   KRNEQLKRWIGSE--TDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLRLLERGA 64

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKY 122
           D+  A +D ++A+H A    ++++V+ LV +G +I     +G  PLH A    +L++ +Y
Sbjct: 65  DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 123 LLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW 156
           L+ +GA + A    G TPLD+A  E +   L+  
Sbjct: 125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.2 bits (207), Expect = 1e-19
 Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC---KNKADVGAAAMDDMSAIHFASQ 80
                   + +   S     +AA +G +  +  LC    +   V     ++  A   A++
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 81  KGHLEVVRTLVSSGVS--IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASL---TAKTK 135
            GHL V+  L     +  +     +  +    A +  HL ++  L     +      + +
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 136 AGKTPLDLARN---EEIRSFLEEWEQSSKKPNLNGKEKAGESETK 177
                   A       + +FL +         ++  E   +    
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 240

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 3e-17
 Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 16/153 (10%)

Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           + +L            Q  + +N LS+ +        + L       +V   LC   A  
Sbjct: 13  DPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHY 72

Query: 65  GA-----------AAMDDMSAIHFASQKGH---LEVVRTLVSSGVSIKACTRKGLNPLHY 110
                          +        A+  G    L+ +  L++S   +K    +       
Sbjct: 73  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 132

Query: 111 AVQGSHLELVKYLLRKGASLTAKTKA--GKTPL 141
           A +  HL ++  L     +              
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.9 bits (157), Expect = 6e-13
 Identities = 15/122 (12%), Positives = 30/122 (24%), Gaps = 16/122 (13%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
                  G+      I         +R K       L+   G  ++V             
Sbjct: 227 EIHEFEYGEKYVNPFIAR-----HVNRLKEMHDAFKLSNPDGVFDLV------TKSECLQ 275

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSG-----VSIKACTRKGLNPLHYAVQGSHLELVKY 122
               +  +   + +  L+ +R L+S                    L  A++  +      
Sbjct: 276 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335

Query: 123 LL 124
           LL
Sbjct: 336 LL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.4 bits (135), Expect = 4e-10
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 26/154 (16%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
             AA   G    +   L+  P+ +                 G+  V  ++ ++   +   
Sbjct: 201 RWAAVGRGHHNVIN-FLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLK-- 250

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
             +   A   ++  G  ++V                 L  L        L+ +++LL   
Sbjct: 251 --EMHDAFKLSNPDGVFDLVTKSECLQ------GFYMLRNLIRRNDEVLLDDIRFLLSIP 302

Query: 128 A-----SLTAKTKAGKTPLDLA---RNEEIRSFL 153
                             L LA    N+   + L
Sbjct: 303 GIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 12/90 (13%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC-----KNKA 62
              +   G    V         S   +  +    L         + + +L      K  A
Sbjct: 256 FKLSNPDGVFDLVTK-------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 63  DVGAAAMDDMSAIHFASQKGHLEVVRTLVS 92
                  D    +  A + G+      L+S
Sbjct: 309 PTATIPGDANELLRLALRLGNQGACALLLS 338

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (189), Expect = 1e-18
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 8   LHAAARSGDLKAVQSIL-----ISNPLSVNSRDKHSRTPLHLAAWS---GQTEVVSYLCK 59
           L  A ++ D+  +         ++  + + +  +   T LHLA  S       +V +L +
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 60  NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL 119
           N  ++        +A+H+     + E ++ L+    SI+     G  PL  A +  H   
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 120 VKYLLRKGA 128
            + L +  +
Sbjct: 130 EELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
              ++   TPL +A           L +  + 
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 76.3 bits (186), Expect = 3e-17
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 31  VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDD-MSAIHFASQKGHLEVVRT 89
            +S     RT LH AA      +V YL   K        +D  + I  A+Q+G +EVV  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 90  LVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           L+  G S++A           A   +H  +V    R
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.1 bits (170), Expect = 5e-15
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH AA+  ++  V+ ++     + + +D+  +TP+ LAA  G+ EVV YL +  A V A 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 68  AMDDMSAIHFASQKGHLEVVRTL 90
              D +A   A    H  +V   
Sbjct: 251 DATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.1 bits (162), Expect = 8e-14
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 58  CKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSH 116
               A   +      +A+H+A+Q  ++ +V+ LV   G +       G  P+  A Q   
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 117 LELVKYLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFLEE 155
           +E+V YL+++GAS+ A      T   LA+   +  I    + 
Sbjct: 234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 11/129 (8%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQTEVVSYLCKNK----- 61
           +     +    A+   +     SVN  D +H+RT LH  A +   E    L  ++     
Sbjct: 4   IKLHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 62  ---ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLE 118
              ADV A   D+ + +  A       +V  L+ +G       +   + LH A       
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 119 LVKYLLRKG 127
           ++ Y+L   
Sbjct: 122 MMVYMLNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK 59
           +  AA+ G ++ V   LI    SV + D    T   LA  +    +V    +
Sbjct: 225 IMLAAQEGRIEVVM-YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 5e-10
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 73  SAIHFASQ-KGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR------ 125
           S I   ++  G   +   +    V+I    R     LH+    S  E  + L+       
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 126 --KGASLTAKTKAGKTPL 141
              GA + A      TPL
Sbjct: 61  IAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 106 NPLHYAVQ-GSHLELVKYLLRKGASLTAKTKAGKTPLDLA---RNEEIRSFLEEWEQS-- 159
           +P+    +      + + + R+  ++    +  +T L       + E    L   E    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 160 -SKKPNLNGKEKAGES 174
            +   ++N  +    +
Sbjct: 61  IAAGADVNAMDCDENT 76

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 14  SGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCK-------------N 60
           + D    +++L      +   D  +RT LH    +      S   K              
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSS---GVSIKACTRKGLNPLHYAVQGSHL 117
              + +   +  S  +  + +    ++  L         + A    G   L+ A +  ++
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

Query: 118 ELVKYLLRKGASLTAKTKAGKTPLDLA 144
            +V  LL  GA      K+G  P+D  
Sbjct: 273 SIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 1   MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
           + +      AAA+      +  I+      + S      +  +      +  ++  L   
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 61  ---KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV 112
                 + A   +  + ++ A++ G++ +V  L+  G       + GL P+ +  
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 19/192 (9%)

Query: 2   GNREEELHAAARSGDLKAVQSILISNPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKN 60
           G+  ++    +    L+ V     +  L++N   D+H  TPLH        E+V +L K+
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129

Query: 61  KADVGAAAMDDMSAIHFASQKGHL----EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
            ++         S +  A +  +          L      +          LH+ +  S 
Sbjct: 130 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 189

Query: 117 LEL------------VKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW--EQSSKK 162
           +              + ++++K           K      +N E +  + E    +    
Sbjct: 190 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 249

Query: 163 PNLNGKEKAGES 174
             LN ++  G++
Sbjct: 250 NMLNAQDSNGDT 261

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 2/162 (1%)

Query: 19  AVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMD-DMSAIHF 77
            +   L S  ++ N +       L    +    E+ + L  + ++  +     +    H 
Sbjct: 20  KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 79

Query: 78  ASQKGHLEVVRTLVSSGVSIKACT-RKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA 136
           +      EV     ++ +++       G  PLH+    ++LELVK+L++ G++       
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 139

Query: 137 GKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGESETKL 178
           G++ L  A           +E            +   + T L
Sbjct: 140 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 181

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.4 bits (173), Expect = 1e-15
 Identities = 25/100 (25%), Positives = 46/100 (46%)

Query: 24  LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
           LI+    +N+ D   +T LH AA    TE V+ L  + A+  A    D + +  A+++G 
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 84  LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL 123
            E  + L+ +  + +        P   A +  H ++V+ L
Sbjct: 169 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 37  HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS 96
              TPL LAA      +V  L    AD+ AA     +A+H+A+   + E V  L+    +
Sbjct: 89  DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 148

Query: 97  IKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR---NEEIRSFL 153
             A   K   PL  A +    E  K LL   A+        + P D+A    + +I   L
Sbjct: 149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

Query: 154 E 154
           +
Sbjct: 209 D 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 24  LISNPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG 82
           L++    +N+  DK   T LHLAA   + +    L    AD  +      + +H A    
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 83  HLEVVR-TLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL 141
            + V +  L +   ++ A    G  PL  A + +   +V+ L+   A + A   +GKT L
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 127

Query: 142 DLARNEEIRSFLEEWEQSSKKPN 164
             A        +          +
Sbjct: 128 HWAAAVNNTEAVNILLMHHANRD 150

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 23  ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL 57
            L+ N  +    D   R P  +A+     ++V  L
Sbjct: 174 ALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 52 EVVSYLCKNKADVGAAAMDD-MSAIHFASQKGHLEVVRTL 90
          +V+S L    A++ A       +++H A++    +  + L
Sbjct: 3  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 118 ELVKYLLRKGASLTAKT-KAGKTPLDLA---RNEEIRSFLEEW 156
           +++  LL +GA L A   K G+T L LA      +    L + 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 6e-15
 Identities = 27/149 (18%), Positives = 42/149 (28%), Gaps = 16/149 (10%)

Query: 8   LHAAARSGDLKAVQSIL--ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           LH A        +  +L   +    ++ ++   +T LHLAA  G+   V  L    A V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNP--------------LHYA 111
            A     +A+H A +         L+    S                            +
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 112 VQGSHLELVKYLLRKGASLTAKTKAGKTP 140
                 E           L A+   G TP
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTP 161

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
               ++       +       L + + +    TPLH+A      E+V  L    AD+   
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 68  AMDDM-SAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK 126
                 + +H A +     V+  L+ +G    A    G  PL  A+   +  L + L   
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 127 GA 128
           GA
Sbjct: 248 GA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 1e-13
 Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 3/121 (2%)

Query: 32  NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD---VGAAAMDDMSAIHFASQKGHLEVVR 88
               +   T LHLA        + +L    A    +        +A+H A+  G    V 
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 89  TLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEE 148
            L ++G  +    R G   LH A +         LL+   S                  +
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 149 I 149
            
Sbjct: 123 T 123

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 9   HAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
           H A  +     ++ +L+       +R    RTPL  A       +   L  + A 
Sbjct: 197 HLAVEAQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 1e-14
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 46/209 (22%)

Query: 8   LHAAARSGDLKAVQSI---LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSY-------- 56
           LH A    +      +   +  +   +N ++   +TPLHLA  + Q E+           
Sbjct: 6   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 65

Query: 57  -------------------------------LCKNKADVGAAAMDDMSAIHFASQKGHLE 85
                                               + + A   +  + +H AS  G+L 
Sbjct: 66  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 125

Query: 86  VVRTLVSSGVSI-KACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLA 144
           +V  LVS G  +       G   LH AV   + +LV  LL+ GA +   T  G +P  L 
Sbjct: 126 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 185

Query: 145 R---NEEIRSFLEEWEQSSKKPNLNGKEK 170
               +  I+  L +    + +     +++
Sbjct: 186 WGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 33/96 (34%)

Query: 1   MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
             N    LH A+  G L  V+ ++            + RT LHLA      ++VS L K 
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS 96
            ADV        S       +    + + L    + 
Sbjct: 168 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 5e-07
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 104 GLNPLHYAVQGSH----LELVKYLLRKGASLTAKTKAGKTPLDLA 144
           G + LH A+        +E+++ +    A L  +    +TPL LA
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 3e-05
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 39 RTPLHLAAWSGQT----EVVSYLCKNKADVGAAAMDDMSAIHFASQKGH 83
           + LHLA    +     EV+  +  + A +        + +H A     
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 70  DDMSAIHFASQKGH----LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSH 116
           D  S +H A         +EV+R +      +         PLH AV  + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 4e-14
 Identities = 26/85 (30%), Positives = 40/85 (47%)

Query: 37  HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS 96
             R+PL  A  +    +V  L ++ A+V A      SA+H AS +G L +VRTLV SG  
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 97  IKACTRKGLNPLHYAVQGSHLELVK 121
                     PL  A     +++++
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 2e-13
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 37  HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMS-AIHFASQKGHLEVVRTLVSSGV 95
              T LH+A  +   E V  L +  AD+ A  +      +  A +   L +V+ L+  G 
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168

Query: 96  SIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFL 153
           ++ A    G + LH A     L LV+ L+R GA  + K     TPL +AR+  +   L
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-11
 Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 1   MGNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKN 60
           + +    L  A  +    ++  +L+ +  +VN++     + LH A+  G   +V  L ++
Sbjct: 141 IKSGRSPLIHAVENNS-LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 199

Query: 61  KADVGAAAMDDMSAIHFASQKGHLEVVR 88
            AD       + + +  A  +  ++++R
Sbjct: 200 GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 8   LHAAARSGDLKAVQ---SILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           LH A   G+L AV    ++       ++  +   +TPLHLA  +    VV  L    A  
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGV----SIKACTRKGLNPLHYAVQGSHLELV 120
            A      +A H A +      +R L+ S       ++A    GL  LH AV     E V
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 121 KYLLRKGA 128
           + LL +GA
Sbjct: 127 QLLLERGA 134

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-08
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 104 GLNPLHYAVQGSHLELVKYLL----RKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS 159
           G  PLH AV   +L  V  L+    + G  L       +TPL LA    + S +     +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 160 SKKPN 164
              P 
Sbjct: 63  GASPM 67

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 39  RTPLHLAAWSGQTEVVSYLCK----NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
            TPLH+A   G    V  L         ++        + +H A       VVR LV++G
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 95  VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
            S  A  R G    H A +      ++ LL   A
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 97

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 70  DDMSAIHFASQKGHLEVVRTLVS----SGVSIKACTRKGLNPLHYAVQGSH 116
           D  + +H A  +G+L  V  LV+     G  +         PLH AV  + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 3e-13
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           LH A    +   VQ +L S P  +  +D+  R PLH +      E+ S+L     +V   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKAC-----TRKGLNPLHYAVQGSHLELVKY 122
              D S          +  +  + S             T +G+  LH AV     E+ ++
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 123 LLRKGASLTAKTKAGKTPL 141
           L+  GAS+  K K  + PL
Sbjct: 124 LIENGASVRIKDKFNQIPL 142

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 4e-13
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 37  HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVS 96
              T LHLA      EV  +L +N A V      +   +H A+  G L+++  L   G S
Sbjct: 104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 163

Query: 97  -IKACTRKGLNPLHYAVQGSHLELVKYLLRK-GASLTAKTKAGKTPLDLARNEEIRSFL 153
            +    ++G  PL +A+   H +    L+ K GA        G    D+A NE+++ F 
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 2e-12
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 23  ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC-KNKADVGAAAMDDMSAIHFASQK 81
            LI N  SV  +DK ++ PLH AA  G  +++  LC   K+ V        + +  A  +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 82  GHLEVVRTLVSS-GVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA 128
           GH +    LV   G        KG      A+   + ++ K+ L    
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 3e-08
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 107 PLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTPLDLA 144
           PLH A   +    V+ LL  K + L  K + G+ PL  +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 6e-08
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 40 TPLHLAAWSGQTEVVSYLCKNK-ADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG 94
           PLH A    +   V  L  +K + +     D    +H++      E+   L+S  
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 5e-07
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLC-KNKADVGA 66
           LH AA  G LK ++ +      +VN +DK   TPL  A   G  +    L  K  A+   
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 201

Query: 67  AAMDDMSAIHFASQKGHLEVVRTLVSSGV 95
                  A   A  +   +V +  +++ V
Sbjct: 202 VDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 3/55 (5%)

Query: 9   HAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD 63
             A   G   A   ++       +  D        +A      +V  +   N  D
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (148), Expect = 1e-12
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           ++L  AAR+G    V+ IL++N       D    +PLHLAA  G       L +      
Sbjct: 4   KKLLEAARAGQDDEVR-ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
           A    D + +H A+ +GH  +V  L+  G  + A     +  LH+A + +H E+V+ L++
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 126 KGASLTAKTKAGKTPLDLAR---NEEIRSFLE 154
            GA +  ++K  KT  D++    NE++   L+
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-12
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 6   EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
           + L  AA  GD++ V+ +L    +  ++ ++  +T        G T +   L K  A   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPN 62

Query: 66  AAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLR 125
                  S +H A++ G L+ ++ LV  G  +      G  P+H AVQ  H  +V +L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA- 121

Query: 126 KGASLTAKTKAGKTPLDLA---RNEEIRSFLEE 155
             + L  +   G TPL+LA     +++   L+ 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 103 KGLNPLHYAVQGSHLELVKYLL-RKGASLTAKTKAGKTP 140
           +  + L  A     ++ V+ LL R+     A  + GKT 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-11
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  ++  G+   VQ  +I      +  +    T LH A  +G TE+V +L +   +V AA
Sbjct: 5   LLDSSLEGEFDLVQ-RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLN---PLHYAVQGSHLELVKYLL 124
             D  + +H A+   +++V + LV SG ++ A T   +         ++  + +  ++L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 125 RKGASL 130
                +
Sbjct: 124 GVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
             L  ++  G+ ++V  +     D      + ++A+H A   GH E+V+ LV  GV++ A
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKA-GKTPLDLAR-----NEEIRSFL 153
               G  PLH A   +++++ K+L+  GA++ A T +  +T  D          +   FL
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 27  NPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVG 65
              ++   D  +          G T+   +L   +  +G
Sbjct: 92  AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 105 LNPLHYAVQGSHLELVKYLLRKGA 128
           L  L  +      +LV+ ++ +  
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVD 25

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (135), Expect = 3e-11
 Identities = 34/115 (29%), Positives = 50/115 (43%)

Query: 40  TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKA 99
                A  +G  + V        DV          +H+A+  G LE++  L+  G  I A
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 100 CTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE 154
             +  + PL  AV   H+  VK LL KGA  T K   G T L+   N+ I++ L+
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (116), Expect = 1e-08
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 5   EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADV 64
           ++E   A ++GDL  V+   ++    VN   +  R PLH AA  GQ E++ +L    AD+
Sbjct: 3   DKEFMWALKNGDLDEVK-DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 65  GAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
            A     ++ +  A  +GH+  V+ L+S G         GL  L         + +K LL
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

Query: 125 R 125
           +
Sbjct: 118 Q 118

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 2e-09
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 37/159 (23%)

Query: 2   GNREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHL----------------- 44
           GN   EL +AA  GDL+ +   L+ N ++VN+++   RT L +                 
Sbjct: 2   GN---ELASAAARGDLEQLT-SLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA 57

Query: 45  ---------------AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL-EVVR 88
                          AA +G  + +  L + +ADV     +    +H A+++GHL  V  
Sbjct: 58  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 117

Query: 89  TLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKG 127
            +  +  ++     KG      A      E+V  +   G
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 9e-07
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 106 NPLHYAVQGSHLELVKYLLRKGASLTAKTKAGK 138
           N L  A     LE +  LL+   ++ A+   G+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-09
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 8   LHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA 67
           L  AA  G ++ V+  L+    + N+ + + R P+ +            L        A 
Sbjct: 7   LATAAARGRVEEVR-ALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 68  AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL 124
                  +H A+++G L+ +  L  +G  +      G  P+  A +  H ++ +YL 
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 6e-04
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 106 NPLHYAVQGSHLELVKYLLRKGA 128
           + L  A     +E V+ LL  GA
Sbjct: 5   DWLATAAARGRVEEVRALLEAGA 27

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 74  AIHFASQKGHLEVVRTLVSSGVSIKAC 100
            +  A+ +G +E VR L+ +G +  A 
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAP 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-33  Score=219.18  Aligned_cols=165  Identities=26%  Similarity=0.308  Sum_probs=113.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLS---VNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   79 (238)
                      +|+||||+||..|+.++++.||. .+++   ++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~-~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhh
Confidence            68999999999999999986654 4444   6777888999999999999999999999999998888777777777777


Q ss_pred             HcCCHHHHHHHHHC-----------------------------------------------CCCccccccCCCcHHHHHH
Q 041573           80 QKGHLEVVRTLVSS-----------------------------------------------GVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        80 ~~~~~~~v~~Ll~~-----------------------------------------------g~~~~~~~~~g~t~L~~A~  112 (238)
                      ..++.+++++|++.                                               +.+++.++..|.||||+|+
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~  166 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccc
Confidence            77766666666542                                               1223344555666666666


Q ss_pred             HCCCHHHHHHHHhcCCCcccc-CCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCC
Q 041573          113 QGSHLELVKYLLRKGASLTAK-TKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK  168 (238)
Q Consensus       113 ~~g~~~~~~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~  168 (238)
                      ..|+.+++++|++.+++++.. +..|.||||+|+..+..+++++|++.+.+++....
T Consensus       167 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCC
Confidence            666666666666666555433 34566666666666666666666655555544433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=201.26  Aligned_cols=153  Identities=25%  Similarity=0.406  Sum_probs=145.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL   84 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   84 (238)
                      .+.|+.||..|+.++|+.||...+++++..|..|+||||+|+ .|+.+++++|++++++++..+..|.+|+++++..++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345999999999999999998889999999999999999987 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhh
Q 041573           85 EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQS  159 (238)
Q Consensus        85 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  159 (238)
                      +++++++++|++++.+|..|+||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..+..+++++|+++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999999887 7999999999999999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-32  Score=198.24  Aligned_cols=153  Identities=27%  Similarity=0.408  Sum_probs=146.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE   85 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   85 (238)
                      ++||.||..|+.++|+ +|.+.|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..+...
T Consensus         3 ~~Lh~Aa~~g~~~~v~-~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLT-SLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHH-HHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHH-HHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            8999999999999999 555689999999999999999886 79999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCC-CccccCCCCCCHHHhhcchhHHHHHHHHHhhc
Q 041573           86 VVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA-SLTAKTKAGKTPLDLARNEEIRSFLEEWEQSS  160 (238)
Q Consensus        86 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  160 (238)
                      ++..|+..+.+++..+..|.+|||+|+..++.+++++|+++++ +++.+|..|+||||+|+..++.+++++|++.|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999986 88999999999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-32  Score=207.87  Aligned_cols=167  Identities=27%  Similarity=0.369  Sum_probs=131.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+||..|+.++++. +...+......+..+.+++++++..++.+++++|+++|++++..|..|.||||+|+..|
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~  114 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEF-LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN  114 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHH-HHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHhhhhccccc-ccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcC
Confidence            46677777777777777763 33444444555555666666666666777777777788888888888889999998888


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +.+++++|+++|++++.++..|.||||+|+..++..++++|+..|.+++.+|..|+||||+|+..+..+++++|++.+.+
T Consensus       115 ~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad  194 (223)
T d1uoha_         115 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS  194 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCC
Confidence            88999999988888888888888999999988888888888888888888888899999999888888888888888877


Q ss_pred             CCCCCCCc
Q 041573          163 PNLNGKEK  170 (238)
Q Consensus       163 ~~~~~~~~  170 (238)
                      ++.....+
T Consensus       195 ~~~~d~~g  202 (223)
T d1uoha_         195 IYIENKEE  202 (223)
T ss_dssp             SCCCCTTS
T ss_pred             CCCCCCCC
Confidence            76554433

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-31  Score=206.83  Aligned_cols=154  Identities=29%  Similarity=0.398  Sum_probs=146.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .+.++++.|+..|+.++++. |...+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+
T Consensus        69 ~~~~~~~~~~~~~~~~i~~~-Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~  147 (223)
T d1uoha_          69 AGWSPLHIAASAGRDEIVKA-LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG  147 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccchhHH-HhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcC
Confidence            46789999999999999994 55678999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHh
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      +..++++|+..|.+++.+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+ .+..++++.|++
T Consensus       148 ~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         148 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999999999999999999999999999999999999999999999996 588889988874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=2.7e-32  Score=216.53  Aligned_cols=156  Identities=24%  Similarity=0.374  Sum_probs=136.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHH-------HhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHH
Q 041573            3 NREEELHAAARSGDLKAVQSIL-------ISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAI   75 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll-------~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L   75 (238)
                      .|+||||+||..|+.++|+.|+       ...|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            4889999999999999888664       467899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHH---------------------------------------------------------------
Q 041573           76 HFASQKGHLEVVRTLVS---------------------------------------------------------------   92 (238)
Q Consensus        76 ~~A~~~~~~~~v~~Ll~---------------------------------------------------------------   92 (238)
                      ++|+..++..++.++..                                                               
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99988877655444432                                                               


Q ss_pred             ------------------CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573           93 ------------------SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus        93 ------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                                        .+.+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                              34556677888899999999999999999999999999999999999999999999999998


Q ss_pred             HHHh
Q 041573          155 EWEQ  158 (238)
Q Consensus       155 ~l~~  158 (238)
                      +|.+
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-31  Score=203.34  Aligned_cols=153  Identities=28%  Similarity=0.361  Sum_probs=122.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHH---hCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCc------
Q 041573            2 GNREEELHAAARSGDLKAVQSILI---SNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM------   72 (238)
Q Consensus         2 ~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~------   72 (238)
                      .+|+||||.||..|+.++++.|+.   ..|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.      
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            479999999999999999997763   68999999999999999999999999999999999988876654444      


Q ss_pred             -----------------------------------------------------------------hHHHHHHHcCCHHHH
Q 041573           73 -----------------------------------------------------------------SAIHFASQKGHLEVV   87 (238)
Q Consensus        73 -----------------------------------------------------------------t~L~~A~~~~~~~~v   87 (238)
                                                                                       ++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                             555555555666666


Q ss_pred             HHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHH
Q 041573           88 RTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLE  154 (238)
Q Consensus        88 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  154 (238)
                      +.++..|..++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..++.++++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            6666667777777777777777777777777777777777777777777777777777777766653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.8e-31  Score=190.25  Aligned_cols=151  Identities=26%  Similarity=0.396  Sum_probs=142.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCC
Q 041573            4 REEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGH   83 (238)
Q Consensus         4 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   83 (238)
                      ..||||.||+.|+.++|+.|| ..|++++ .+..|.||||+|+..++.+++..++.........+..+.++++.++...+
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL-~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILM-ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHCCCHHHHHHHH-HcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999666 5577776 68999999999999999999999999998888888899999999999999


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      .+++++++.+|++++.++..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-30  Score=198.03  Aligned_cols=166  Identities=25%  Similarity=0.292  Sum_probs=143.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcc---ccCCchHHHHH---
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA---AMDDMSAIHFA---   78 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---~~~g~t~L~~A---   78 (238)
                      ++|||+||..|+.++|+.||...+.+++.+|.+|+||||+|+..|+.+++++|+++|++++..   +..|.+|+|++   
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            479999999999999999998899999999999999999999999999999999999998654   33455555554   


Q ss_pred             --------------------------------HHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc
Q 041573           79 --------------------------------SQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK  126 (238)
Q Consensus        79 --------------------------------~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  126 (238)
                                                      +..++.+++++|+..|...+..+..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                            444566777777778888888999999999999999999999999998


Q ss_pred             C-CCccccCCCCCCHHHhhcchhHHHHHHHHHh-hcCCCCCCCCCc
Q 041573          127 G-ASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ-SSKKPNLNGKEK  170 (238)
Q Consensus       127 g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~-~~~~~~~~~~~~  170 (238)
                      | .+++.+|..|+||||+|+..+..+++++|+. .+.+++.....+
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            7 6789999999999999999999999999886 577776665443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.5e-29  Score=202.30  Aligned_cols=165  Identities=22%  Similarity=0.278  Sum_probs=149.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      ++.|+|+.||..|+.++|+.|| ..|+++|.+|.+|.||||+|+..|+.+++++|+++|+++...+..+.+||++++..+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            3569999999999999999555 678999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcc------------------------------------------------------------cccc
Q 041573           83 HLEVVRTLVSSGVSIK------------------------------------------------------------ACTR  102 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~------------------------------------------------------------~~~~  102 (238)
                      +.++++.|+.+|+..+                                                            ..+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            9999999998765432                                                            2345


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCC
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGK  168 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~  168 (238)
                      .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+..+++++|++.+.+++....
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            677999999999999999999999999999999999999999999999999999999988876543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=195.11  Aligned_cols=159  Identities=25%  Similarity=0.309  Sum_probs=102.7

Q ss_pred             CchHHHHHHHHcCCHHHHHH---HHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQS---ILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFAS   79 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   79 (238)
                      +|.||||+|+..|+.+++..   ++...+.++|.+|.+|+||||+||..|+.+++++|++.|++++..|..|.|||++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            46666666666666443332   223455566666666666666666666666666666666666666666665555555


Q ss_pred             HcCCHHHHH---------------------------------------HHHHCCCCccccc-cCCCcHHHHHHHCCCHHH
Q 041573           80 QKGHLEVVR---------------------------------------TLVSSGVSIKACT-RKGLNPLHYAVQGSHLEL  119 (238)
Q Consensus        80 ~~~~~~~v~---------------------------------------~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~  119 (238)
                      ..++.++++                                       +|+..|+.++..+ .+|+||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            555555444                                       4444555555554 457788888888888888


Q ss_pred             HHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          120 VKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +++|+++|++++.+|..|+||||+|+..+..+++++|.+...
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            888888888888888888888888877777777777776654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=6.4e-29  Score=189.36  Aligned_cols=153  Identities=27%  Similarity=0.305  Sum_probs=139.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCC--------------------------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQ--------------------------------   50 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~--------------------------------   50 (238)
                      +|.||||+||..|+.++++ +|...+++++.++..+.++++.++..++                                
T Consensus        22 ~G~t~L~~A~~~g~~e~v~-~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          22 TGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             HCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999 5557889999998888888877766543                                


Q ss_pred             --HHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCC
Q 041573           51 --TEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGA  128 (238)
Q Consensus        51 --~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~  128 (238)
                        ....+.|+..+++++.++..|.|||++++..+...++..|+..+.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence              355566677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCHHHhhcchhHHHHHHHH
Q 041573          129 SLTAKTKAGKTPLDLARNEEIRSFLEEW  156 (238)
Q Consensus       129 ~~~~~~~~g~tpl~~A~~~~~~~~~~~l  156 (238)
                      +++.+|..|+||||+|+..++.+++++|
T Consensus       181 d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         181 NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=9.2e-31  Score=182.63  Aligned_cols=110  Identities=29%  Similarity=0.392  Sum_probs=103.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHH
Q 041573           39 RTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLE  118 (238)
Q Consensus        39 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  118 (238)
                      .|||++|++.|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+.+|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCCHHHhhcchh
Q 041573          119 LVKYLLRKGASLTAKTKAGKTPLDLARNEE  148 (238)
Q Consensus       119 ~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  148 (238)
                      ++++|+++|++++.+|..|.||||+|....
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~  112 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDNQA  112 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSSTT
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhHHH
Confidence            999999999999999999999999996543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-28  Score=193.79  Aligned_cols=164  Identities=27%  Similarity=0.368  Sum_probs=140.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcc--------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRD-KHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA--------------   67 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~--------------   67 (238)
                      .+.|+||.||..|++++|+. |...|+++|.++ ..|.||||+|+..|+.+++++|++.+..+...              
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~-Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQ-LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHH-HHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            36799999999999999995 557799999776 47999999999999999999999876554211              


Q ss_pred             --------------------------------------------------------------ccCCchHHHHHHHcCCHH
Q 041573           68 --------------------------------------------------------------AMDDMSAIHFASQKGHLE   85 (238)
Q Consensus        68 --------------------------------------------------------------~~~g~t~L~~A~~~~~~~   85 (238)
                                                                                    ...|.||||+|+..|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                          123678999999988776


Q ss_pred             HHHHHHH--------------------------------------CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc-
Q 041573           86 VVRTLVS--------------------------------------SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK-  126 (238)
Q Consensus        86 ~v~~Ll~--------------------------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-  126 (238)
                      ++++|+.                                      +|++++.++..|.||||+|+..|+.+++++|++. 
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            6666653                                      4667777888999999999999999999999974 


Q ss_pred             CCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCC
Q 041573          127 GASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNG  167 (238)
Q Consensus       127 g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  167 (238)
                      |++++.+|.+|.||||+|+..++.+++++|++.|++++...
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            99999999999999999999999999999999999987643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=194.65  Aligned_cols=137  Identities=21%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           37 HSRTPLHLAAWSGQT----EVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      +|.||||+|+..|+.    ++++.+...|+++|.+|.+|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999985    5566677789999999999999999999999999999999999999999888888887777


Q ss_pred             HCCCHHHHHHHH---------------------------------------hcCCCccccC-CCCCCHHHhhcchhHHHH
Q 041573          113 QGSHLELVKYLL---------------------------------------RKGASLTAKT-KAGKTPLDLARNEEIRSF  152 (238)
Q Consensus       113 ~~g~~~~~~~Ll---------------------------------------~~g~~~~~~~-~~g~tpl~~A~~~~~~~~  152 (238)
                      ..|..++++.|+                                       ..|+.++..+ .+|.||||+|+..+..++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            776666555554                                       4455555554 579999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCcCCc
Q 041573          153 LEEWEQSSKKPNLNGKEKAGE  173 (238)
Q Consensus       153 ~~~l~~~~~~~~~~~~~~~~~  173 (238)
                      +++|++.+.+++.....+...
T Consensus       161 v~~Ll~~gad~~~~~~~G~tp  181 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSP  181 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCG
T ss_pred             HHHHHhcCCcccccCCCCCCH
Confidence            999999888776665544433

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-28  Score=188.75  Aligned_cols=156  Identities=24%  Similarity=0.242  Sum_probs=132.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccC---CCC-----------------------------------CCcHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSR---DKH-----------------------------------SRTPLHL   44 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~---~~~-----------------------------------g~t~L~~   44 (238)
                      +|+||||+|+..|+.++++.|| ..+++++..   +..                                   +.|++++
T Consensus        33 ~G~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  111 (229)
T d1ixva_          33 DGRIPLHWSVSFQAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL  111 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHH-TTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCccccchhh-hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999554 566666533   333                                   4455555


Q ss_pred             HHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCC-CCccccccCCCcHHHHHHHCCCHHHHHHH
Q 041573           45 AAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSG-VSIKACTRKGLNPLHYAVQGSHLELVKYL  123 (238)
Q Consensus        45 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~~~~L  123 (238)
                      ++..++.+++++|+..|..++..+..|+||||+|+..|+.+++++|+..+ .+++.+|..|+||||+|+..|+.+++++|
T Consensus       112 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  191 (229)
T d1ixva_         112 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL  191 (229)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHH
Confidence            56666777777788888888888999999999999999999999999987 67899999999999999999999999999


Q ss_pred             Hh-cCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573          124 LR-KGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       124 l~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ++ .|++++.+|..|+||||+|+..   +++++|++.+.+
T Consensus       192 l~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~~g~d  228 (229)
T d1ixva_         192 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHHHCCC
T ss_pred             HHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHHcCCC
Confidence            96 5999999999999999999975   467888887764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-28  Score=203.13  Aligned_cols=159  Identities=31%  Similarity=0.423  Sum_probs=148.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      ++.||||.|+..++.++++. +...+...+..+..|.|||+.|+..++.+++++|+++|++++..+..+.||||.++..+
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~  308 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG  308 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS
T ss_pred             CCCCHHHHHHHhCcHhHhhh-hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccC
Confidence            57899999999999999984 45667888899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      +..+++++++.|++++.+|..|.||||+|++.|+.++|++|+++|++++.+|.+|+||||+|+..++.+++++|......
T Consensus       309 ~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~  388 (408)
T d1n11a_         309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE  388 (408)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred             cceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998988877555433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=175.90  Aligned_cols=118  Identities=22%  Similarity=0.349  Sum_probs=57.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCc-hHHHHHHHcCC
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDM-SAIHFASQKGH   83 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~   83 (238)
                      .++||.|+..|++++|+.|+ ..|+++|.++..|.||||+|+ .|+.+++++|+++|++++..+..+. ||||+|+..|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHH-HcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            34455555555555554322 334455555555555554432 3455555555555555554444433 34555555555


Q ss_pred             HHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHH
Q 041573           84 LEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLL  124 (238)
Q Consensus        84 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  124 (238)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55555555555555555555555555555555555555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=8.1e-28  Score=192.12  Aligned_cols=153  Identities=30%  Similarity=0.454  Sum_probs=135.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcc---------------
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAA---------------   67 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---------------   67 (238)
                      +|+||||+|+..|+.++++ +|...+.+....+..+.+||++|+..++.++++.|+.+|+..+..               
T Consensus        72 ~G~T~L~~A~~~g~~eiv~-~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~  150 (291)
T d1s70b_          72 DGLTALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (291)
T ss_dssp             TCCBHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCCcHHHHHHhcCCceeee-eecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccc
Confidence            6899999999999999999 555778888889999999999999999999999999887665443               


Q ss_pred             ---------------------------------------------ccCCchHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q 041573           68 ---------------------------------------------AMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR  102 (238)
Q Consensus        68 ---------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  102 (238)
                                                                   +..|.||||+|+..|+.++++.|+..|++++.++.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~  230 (291)
T d1s70b_         151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (291)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceeccccccc
Confidence                                                         23467889999999999999999999999999999


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHH
Q 041573          103 KGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWE  157 (238)
Q Consensus       103 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  157 (238)
                      .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. ....++..+.
T Consensus       231 ~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-~~~~~L~~~~  284 (291)
T d1s70b_         231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQ  284 (291)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHh
Confidence            99999999999999999999999999999999999999999986 3444444443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.4e-29  Score=174.06  Aligned_cols=121  Identities=26%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCC-cHHHHHHHCC
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGL-NPLHYAVQGS  115 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g  115 (238)
                      .+.++||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            3568999999999999999999999999999999999999775 6999999999999999999998775 6999999999


Q ss_pred             CHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHh
Q 041573          116 HLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQ  158 (238)
Q Consensus       116 ~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  158 (238)
                      +.+++++|+++|++++.+|..|+||||+|+..+..+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999998864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=197.25  Aligned_cols=163  Identities=33%  Similarity=0.465  Sum_probs=145.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHH
Q 041573            6 EELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLE   85 (238)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   85 (238)
                      ||||.||..|+.++|+.|+ ..|+++|.+|..|.||||+||..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll-~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             ChHHHHHHCcCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            8999999999999999555 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCC---------------------------------CCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccc
Q 041573           86 VVRTLVSSG---------------------------------VSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTA  132 (238)
Q Consensus        86 ~v~~Ll~~g---------------------------------~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  132 (238)
                      ++++|+..+                                 ......+..+.++++.|+..++.+++++|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999988643                                 33455567788999999999999999999999999999


Q ss_pred             cCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCC
Q 041573          133 KTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKE  169 (238)
Q Consensus       133 ~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~  169 (238)
                      .+..|.+||++|+..+..++++.|+..+..++.....
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  197 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN  197 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCC
Confidence            9999999999999988899999988888776654443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.1e-28  Score=170.36  Aligned_cols=119  Identities=25%  Similarity=0.331  Sum_probs=76.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHH
Q 041573           40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL  119 (238)
Q Consensus        40 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  119 (238)
                      ++|+.||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            35666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCCccccCC-CCCCHHHhh--cchhHHHHHHHHHh
Q 041573          120 VKYLLRKGASLTAKTK-AGKTPLDLA--RNEEIRSFLEEWEQ  158 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~-~g~tpl~~A--~~~~~~~~~~~l~~  158 (238)
                      +++|+++|++++..+. .|+||++++  ...++.+++++|..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            6666666666665553 366665554  34455566665554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=5.8e-29  Score=173.40  Aligned_cols=107  Identities=29%  Similarity=0.413  Sum_probs=102.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL   84 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   84 (238)
                      +|||++|+..|+.++|+.|+ ..|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHH-HhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            68999999999999999555 67899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCccccccCCCcHHHHHH
Q 041573           85 EVVRTLVSSGVSIKACTRKGLNPLHYAV  112 (238)
Q Consensus        85 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  112 (238)
                      +++++|+++|++++.+|..|.||||+|.
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999999983

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-27  Score=193.00  Aligned_cols=142  Identities=18%  Similarity=0.129  Sum_probs=106.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCH---HHHHHHHHC-CCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQT---EVVSYLCKN-KADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~~~~Ll~~-g~~~~~~~~~g~t~L~~A   78 (238)
                      +|+||||+||..|+.++|+ +|+..|++++.+|..|.||||+||..++.   ..+..|++. +..+...|..|+||||++
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~-~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~  184 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVK-HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  184 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH
Confidence            5889999999999999998 44577899999999999999999987642   122222222 334666778889999988


Q ss_pred             HHcCC----HH--------HHHHHHHCCC-------------------------------------CccccccCCCcHHH
Q 041573           79 SQKGH----LE--------VVRTLVSSGV-------------------------------------SIKACTRKGLNPLH  109 (238)
Q Consensus        79 ~~~~~----~~--------~v~~Ll~~g~-------------------------------------~~~~~~~~g~t~L~  109 (238)
                      +..+.    ..        ++.+++..+.                                     .+|.+|..|+||||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh  264 (301)
T d1sw6a_         185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  264 (301)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHH
Confidence            75433    22        2333333221                                     15778889999999


Q ss_pred             HHHHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhc
Q 041573          110 YAVQGSHLELVKYLLRKGASLTAKTKAGKTPLDLAR  145 (238)
Q Consensus       110 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~  145 (238)
                      +|++.|+.++|++|+++|++++++|..|.|||++|+
T Consensus       265 ~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-27  Score=166.39  Aligned_cols=121  Identities=23%  Similarity=0.284  Sum_probs=111.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL   84 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   84 (238)
                      -+.|+.||..|++++|+. |...|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~-Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQR-IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHH-HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hHHHHHHHHcCCHHHHHH-HHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            368999999999999994 5578999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccccc-CCCcHHHHH--HHCCCHHHHHHHHhc
Q 041573           85 EVVRTLVSSGVSIKACTR-KGLNPLHYA--VQGSHLELVKYLLRK  126 (238)
Q Consensus        85 ~~v~~Ll~~g~~~~~~~~-~g~t~L~~A--~~~g~~~~~~~Ll~~  126 (238)
                      +++++|+++|++++..+. .|.||++++  +..|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999998875 588887766  577899999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=7.5e-29  Score=203.60  Aligned_cols=127  Identities=21%  Similarity=0.246  Sum_probs=110.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHH--HHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCcccc--CCchHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSI--LISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAM--DDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~l--l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A   78 (238)
                      .|.|+||+||..|+.++++.+  |...++++|.++..|+||||+||..|+.++|++|++.|++++..+.  .|.||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            689999999999999988754  6789999999999999999999999999999999999999988764  589999999


Q ss_pred             HHcCCHHHHHHHHHCCCCcc---ccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           79 SQKGHLEVVRTLVSSGVSIK---ACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        79 ~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      +..|+.++|++|++.|++..   ..+..+.||+|+|+..|+.+++++|++.|++
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            99999999999999998764   3345677888999999999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=6.4e-28  Score=191.06  Aligned_cols=165  Identities=21%  Similarity=0.256  Sum_probs=132.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCCcCccccCCchHHH
Q 041573            5 EEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYL--------CKNKADVGAAAMDDMSAIH   76 (238)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~L--------l~~g~~~~~~~~~g~t~L~   76 (238)
                      +||||.++..+....+..+|...++++.. +.+|+||||+||..|+.++++.|        ++.|++||.+|.+|+||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            47888666555444444466666655432 24699999999999999888776        5679999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHH-------------------------------------
Q 041573           77 FASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL-------------------------------------  119 (238)
Q Consensus        77 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~-------------------------------------  119 (238)
                      +|+..|+.+++++|+++|++++.++..|.|||++|+..++.++                                     
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            9999999999999999999999999999988888887775333                                     


Q ss_pred             -------------------------------------------HHH-HHhcCCCccccCCCCCCHHHhhcchhHHHHHHH
Q 041573          120 -------------------------------------------VKY-LLRKGASLTAKTKAGKTPLDLARNEEIRSFLEE  155 (238)
Q Consensus       120 -------------------------------------------~~~-Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~  155 (238)
                                                                 +++ +...+.+++.+|..|.||||+|+..+..+++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~  239 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  239 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                                       333 334577788899999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCc
Q 041573          156 WEQSSKKPNLNGKEK  170 (238)
Q Consensus       156 l~~~~~~~~~~~~~~  170 (238)
                      |++.+.+++.....+
T Consensus       240 Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         240 LIQQGASVEAVDATD  254 (277)
T ss_dssp             HHHTTCCSSCCCSSS
T ss_pred             HHHCcCCCCCcCCCC
Confidence            999988876655444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-25  Score=163.68  Aligned_cols=122  Identities=20%  Similarity=0.319  Sum_probs=103.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccC------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCcCccccCCchHHHH
Q 041573            7 ELHAAARSGDLKAVQSILISNPLSVNSR------DKHSRTPLHLAAWS---GQTEVVSYLCKNKADVGAAAMDDMSAIHF   77 (238)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~------~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~   77 (238)
                      .|+.|+..+++..+..++ ..|.+++..      +..|.||||+|+..   +..+++++|+++|++++.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAY-ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHH-HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHH-HcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            456888999998888665 445555543      56789999999975   67889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCC
Q 041573           78 ASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGAS  129 (238)
Q Consensus        78 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  129 (238)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-25  Score=175.42  Aligned_cols=135  Identities=21%  Similarity=0.247  Sum_probs=121.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---cCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHH
Q 041573           32 NSRDKHSRTPLHLAAWSGQTEVVSYLCKNKAD---VGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPL  108 (238)
Q Consensus        32 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  108 (238)
                      +..+.+|.||||+||..|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            34578999999999999999999999999988   566778899999999999999999999999999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHhcCC-----------------------------------------------CccccCCCCCCHH
Q 041573          109 HYAVQGSHLELVKYLLRKGA-----------------------------------------------SLTAKTKAGKTPL  141 (238)
Q Consensus       109 ~~A~~~g~~~~~~~Ll~~g~-----------------------------------------------~~~~~~~~g~tpl  141 (238)
                      |+|+..++.+++++|++.+.                                               +++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999875321                                               2456788899999


Q ss_pred             HhhcchhHHHHHHHHHhhcCCCCCC
Q 041573          142 DLARNEEIRSFLEEWEQSSKKPNLN  166 (238)
Q Consensus       142 ~~A~~~~~~~~~~~l~~~~~~~~~~  166 (238)
                      |+|+..+..+++++|++.+...+..
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~  187 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKP  187 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             cccccccccccccchhccccccccc
Confidence            9999999999999999988777643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.7e-25  Score=161.51  Aligned_cols=123  Identities=26%  Similarity=0.289  Sum_probs=113.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCcc------ccCCchHHHHHHHc---CCHHHHHHHHHCCCCccccccCCCcHHHHH
Q 041573           41 PLHLAAWSGQTEVVSYLCKNKADVGAA------AMDDMSAIHFASQK---GHLEVVRTLVSSGVSIKACTRKGLNPLHYA  111 (238)
Q Consensus        41 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  111 (238)
                      .|+.|++.++...+..++..|++++..      +..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466788999999999999999887765      66799999999974   678999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCC
Q 041573          112 VQGSHLELVKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKP  163 (238)
Q Consensus       112 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  163 (238)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..+..+++++|++.+...
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999877544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=175.83  Aligned_cols=133  Identities=23%  Similarity=0.285  Sum_probs=123.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcC----CHHHHHHHHHCCCCcCccccCCchHHHHH
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSG----QTEVVSYLCKNKADVGAAAMDDMSAIHFA   78 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g----~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   78 (238)
                      .|.||||.|+..|+.++++.|+...+++++..+..|.++++.+...+    ...++++|+++|++++.++..|.||||+|
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            57899999999999999998888889999999999999888776653    45799999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHH-CCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCC
Q 041573           79 SQKGHLEVVRTLVS-SGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTK  135 (238)
Q Consensus        79 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~  135 (238)
                      +..|+.+++++|+. .|++++.+|.+|.||||+|+..|+.+++++|+++||++|++|.
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999997 5999999999999999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.4e-25  Score=159.03  Aligned_cols=121  Identities=27%  Similarity=0.355  Sum_probs=113.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+ .|+.+++++|| ..+.+++..+..|.+||++++..++.+++++++++|++++.++..|.||||+|+..|
T Consensus        35 ~g~t~L~~A~-~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~  112 (156)
T d1bd8a_          35 FGKTALQVMM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG  112 (156)
T ss_dssp             TSCCHHHHSC-TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             CCCccccccc-ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccc
Confidence            5899999887 58899998665 678899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhc
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRK  126 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  126 (238)
                      +.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       113 ~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         113 HTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999887 6899999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=8.2e-25  Score=166.28  Aligned_cols=153  Identities=23%  Similarity=0.281  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH-----------
Q 041573           17 LKAVQSILISNPLSVNS-RDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL-----------   84 (238)
Q Consensus        17 ~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-----------   84 (238)
                      .++|+ +|.+.|+++|. .|.+|.||||+||..|+.+++++|+..|++++.++..+.++++.++..+..           
T Consensus         2 ~~~v~-~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVIS-DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHH-HHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            46788 55567889987 489999999999999999999999999999999999999999988876553           


Q ss_pred             -----------------------HHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHHHhcCCCccccCCCCCCHH
Q 041573           85 -----------------------EVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYLLRKGASLTAKTKAGKTPL  141 (238)
Q Consensus        85 -----------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~tpl  141 (238)
                                             ...+.|...+++++.++..|+|||++++..+...+++.|+.++.+++..|..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence                                   356677778999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHHHHHhhcCCCCCCCCCc
Q 041573          142 DLARNEEIRSFLEEWEQSSKKPNLNGKEK  170 (238)
Q Consensus       142 ~~A~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (238)
                      |+|+..++.++++.|++.+.+++.....+
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~n~~d~~g  189 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANREITDHMD  189 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             chhccccHHHHHHHHHHCCCCCCCcCCCC
Confidence            99999999999999999998877655444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.7e-24  Score=154.95  Aligned_cols=121  Identities=25%  Similarity=0.303  Sum_probs=117.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHH
Q 041573           40 TPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLEL  119 (238)
Q Consensus        40 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  119 (238)
                      +|||+||..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.+|++.++..+...+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcC
Q 041573          120 VKYLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSK  161 (238)
Q Consensus       120 ~~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  161 (238)
                      +++|+..+.+++..+..|.+|+++|+..+..++++.|++.+.
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999998876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-23  Score=158.16  Aligned_cols=135  Identities=26%  Similarity=0.361  Sum_probs=119.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----CCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCccccc-----------
Q 041573           37 HSRTPLHLAAWSGQTEVVSYLCK----NKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACT-----------  101 (238)
Q Consensus        37 ~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------  101 (238)
                      +|.||||+||..|+.++++.|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++..+           
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999998875    799999999999999999999999999999999876643332           


Q ss_pred             ------------------------------------------------------------cCCCcHHHHHHHCCCHHHHH
Q 041573          102 ------------------------------------------------------------RKGLNPLHYAVQGSHLELVK  121 (238)
Q Consensus       102 ------------------------------------------------------------~~g~t~L~~A~~~g~~~~~~  121 (238)
                                                                                  ..+.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                        23457888888888999999


Q ss_pred             HHHhcCCCccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcC
Q 041573          122 YLLRKGASLTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKA  171 (238)
Q Consensus       122 ~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~  171 (238)
                      .++..|.+++.+|..|.||||+|+..++.+++++|++.+.+++....++.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~  211 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND  211 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999988776554443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=9.5e-24  Score=169.71  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=117.2

Q ss_pred             CCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcCCH-------HHHHHHHHCCCCcc
Q 041573           27 NPLSVNSR-DKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKGHL-------EVVRTLVSSGVSIK   98 (238)
Q Consensus        27 ~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~~   98 (238)
                      .++++|.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..++.       .++++|.   ..+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            56788866 89999999999999999999999999999999999999999999987652       4555553   3467


Q ss_pred             ccccCCCcHHHHHHHCCC----HHH--------HHHHHhcCCC-------------------------------------
Q 041573           99 ACTRKGLNPLHYAVQGSH----LEL--------VKYLLRKGAS-------------------------------------  129 (238)
Q Consensus        99 ~~~~~g~t~L~~A~~~g~----~~~--------~~~Ll~~g~~-------------------------------------  129 (238)
                      ..|..|+||||+++..+.    ..+        +.+++..+..                                     
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            788999999999886443    222        3334333221                                     


Q ss_pred             ccccCCCCCCHHHhhcchhHHHHHHHHHhhcCCCCCCCCCcCCcc
Q 041573          130 LTAKTKAGKTPLDLARNEEIRSFLEEWEQSSKKPNLNGKEKAGES  174 (238)
Q Consensus       130 ~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (238)
                      +|.+|.+|+||||+|+..+..+++++|++.+++++.....+..+.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl  296 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  296 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            688899999999999999999999999999999988776655443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.4e-23  Score=148.36  Aligned_cols=120  Identities=31%  Similarity=0.472  Sum_probs=111.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcCccccCCchHHHHHHHcC
Q 041573            3 NREEELHAAARSGDLKAVQSILISNPLSVNSRDKHSRTPLHLAAWSGQTEVVSYLCKNKADVGAAAMDDMSAIHFASQKG   82 (238)
Q Consensus         3 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   82 (238)
                      .|+||||+|+..++.+.+..++ .........+..+.++++.++...+.+++++++.+|++++.++..|+||||+|+..|
T Consensus        33 ~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g  111 (153)
T d1awcb_          33 LGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCccccccccccccccccccc-cccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcc
Confidence            5899999999999999998444 555555666778899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccccCCCcHHHHHHHCCCHHHHHHH
Q 041573           83 HLEVVRTLVSSGVSIKACTRKGLNPLHYAVQGSHLELVKYL  123 (238)
Q Consensus        83 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~~~~L  123 (238)
                      +.+++++|++.|++++.+|..|.||||+|+.+|+.+++++|
T Consensus       112 ~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=5.1e-25  Score=180.55  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=113.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHH---HHHCCCCcCccccCCchHHHHHHHcCCHHHHHHHHHCCCCcccccc--CCC
Q 041573           31 VNSRDKHSRTPLHLAAWSGQTEVVSY---LCKNKADVGAAAMDDMSAIHFASQKGHLEVVRTLVSSGVSIKACTR--KGL  105 (238)
Q Consensus        31 ~~~~~~~g~t~L~~A~~~g~~~~~~~---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~  105 (238)
                      ++.++..|.||||+||..|+.+++++   |+..|++++.++..|+||||+|+..|+.++|++|++.|++++..+.  .|+
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            34566789999999999999887765   7889999999999999999999999999999999999999998764  589


Q ss_pred             cHHHHHHHCCCHHHHHHHHhcCCCc---cccCCCCCCHHHhhcchhHHHHHHHHHhhcCC
Q 041573          106 NPLHYAVQGSHLELVKYLLRKGASL---TAKTKAGKTPLDLARNEEIRSFLEEWEQSSKK  162 (238)
Q Consensus       106 t~L~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  162 (238)
                      ||||+|+..|+.++|++|++.|+++   +..+..|.||++.|+..|+.+++++|++.+..
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            9999999999999999999999876   34456678889999999999999999876643