Citrus Sinensis ID: 041583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MAITIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDANGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEcccccEEEEEEEEEEccccccccccccccEEcccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHEEEEEEEEcccccccccEEEEHHHcccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHccEEccccEEEEEEccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEEEccccHHccccccccccccEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEcccccEEEEcccccccccccccccccccEEEEEccccccccccEEEccccccEEccccccccccccccccccccccccccc
ccEEccccHHHHHccccEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccEEEEcccccccccEEEEEEEccccHcccccHHHccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEHHccccccEEHHHHHHccccccccccEEEccccccccHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHcccEEEccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcEHHHcccccccEEcccEEEEEEccccccccccccccccccEEEEEEEccccccccEEEEEccccEEEEEEcccccccccccccEEHHHcHHHcc
MAITIFQSckkrkrvpnifninnfatqtsslgfhgpfRENIRLFLREYaetedykvqnnpiWCTLLlsesngvvfplyTLEEsikqsshpfcnlcrcvgwshhfvckrryhfiipqhekwikplnmdtlehcdhilhgvvhcngFGHLLSisgskdgsnylCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTygcswfgkwdykfchgsfgvtehkYNRAIQILSSLELKRIIHDfgntgrgrVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILdnrivhrkinpatklaefsleddangeviqtrtepeyhtstlmpgqdvYADVLTLYKNVLlgypeshtVSLAARAILDCKNFAKEWqfkeseddnlmrlkcrvspsynelatqltrplppaelivapkdvtVDELKLIVECSLRDTYCMMEKVVVKEIKMGQnqvfwgagdvwvrgwgldldtelrfeggaddwtvdcvcgakdddgermvACDICQvwqhtrcnsiadnevvpsvfKCRACTAAVA
maitifqsckkrkrvpNIFNINNFatqtsslgfhgPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTtleqrnasinskakisrrelrdEARKKIGDTGLLDFMIKHIHKIildnrivhrKINPATklaefsleddanGEVIQTRtepeyhtstlmpGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFkeseddnlmrLKCRVSPSYNELATqltrplppaelivapkdvtvDELKLIVecslrdtyCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFeggaddwtvDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA
MAITIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDANGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA
***TIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLE************************IGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLE*****EVIQ******YHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA***
**************VPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFG**********IIHLYMNASDTQLITISDLLQWGVQRLEQAAKA****************KISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDA***************STLMPGQDVYADVLTLYKNVLLGYP********ARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSY**********LPPAELIVAPKDV***************************************************************WTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA**
MAITIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDANGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA
*A**IFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDANGE************STLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAV*
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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAITIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNPIWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGVQRLEQAAKAIFTTLEQRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLEDDANGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVKEIKMGQNQVFWGAGDVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
Q7X6Y7704 PHD finger protein MALE M yes no 0.998 0.830 0.383 1e-134
Q9ZUA9 697 PHD finger protein At2g01 no no 0.489 0.411 0.477 4e-79
Q9FMS5672 PHD finger protein MALE S no no 0.955 0.833 0.308 2e-78
Q9C810697 PHD finger protein At1g33 no no 0.953 0.802 0.294 7e-66
P93310160 Uncharacterized mitochond no no 0.148 0.543 0.522 7e-18
Q9FGN8639 Protein DYAD OS=Arabidops no no 0.117 0.107 0.381 2e-05
Q3UG20 1868 Histone-lysine N-methyltr yes no 0.073 0.023 0.444 7e-05
Q8IZD2 1858 Histone-lysine N-methyltr yes no 0.073 0.023 0.444 8e-05
Q1MTR4 424 Putative histone deacetyl yes no 0.076 0.106 0.46 0.0005
>sp|Q7X6Y7|MMD1_ARATH PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/659 (38%), Positives = 384/659 (58%), Gaps = 74/659 (11%)

Query: 1   MAITIFQSCKKRKRVPNIFNINNFATQTSSLGFHGPFRENIRLFLREYAETEDYKVQNNP 60
           M + I ++C+KRKR P ++N+  F      +  +G FR+ IR+FLR+ AE EDY ++   
Sbjct: 1   MPVPIIETCRKRKRKPKVYNLQRFGEDGFPIQRNGAFRDQIRVFLRDCAEIEDYDIRGMT 60

Query: 61  IWCTLLLSESNGVVFPLYTLEESIKQSSHPFCNLCRCVGWSHHFVCKRRYHFIIPQHEKW 120
           +WCTLL  E+   + PLY +EE++K SS P+C+ CRC GWS+HFV KR+YHFIIP   +W
Sbjct: 61  VWCTLLSHETKSSLIPLYIVEENVKHSSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120

Query: 121 IKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLCTILHTQ 180
             PL  D  +   H+LHG++HCNGFGHL+ ++G + GS YLC  +I++ +D LC  L  +
Sbjct: 121 SLPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGMESGSKYLCGREIVDFWDRLCNSLGAR 180

Query: 181 KISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQILSSLELK 240
            I+V D+  KR ++LRLL+ V YG SWFG+W YKFC GSFGVT+++Y  AI+ L SLE+ 
Sbjct: 181 MITVEDLAKKRSVELRLLYGVAYGHSWFGRWGYKFCCGSFGVTKNEYENAIEALGSLEID 240

Query: 241 RIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWGV--------QRLEQAAKAIF 292
           +I  DFG   + + I ++   Y   S+  L T  DLL++ +        Q+L      + 
Sbjct: 241 QIEFDFGELRQSKEINQVFRYYREMSEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLL 300

Query: 293 TT-----------LEQRNASINSKAKISR------------------------------- 310
           T            L++ + + N K+   R                               
Sbjct: 301 TDSPHQKRSSRLLLKKSDVADNDKSPKYRNYSTVAANLGSRWPVRRLIFAAEVIVESLKE 360

Query: 311 -----------RELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSL 359
                      +++RD AR  IGDTGLLD+++K ++ +++ + +V R ++P T++  +++
Sbjct: 361 MKALKQNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVGDVLVRRYVDPITRILHYTI 420

Query: 360 E--DDA--------NGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVS 409
           +  DDA           V+     P    + L PG DVY D+L LY NVLL YPES  V 
Sbjct: 421 QDLDDAVKAKEPKKKEAVVLEEITPLRILTPLKPGADVYGDLLLLYTNVLLNYPESELVR 480

Query: 410 LAARAILDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDV 469
            A +AILD K+F KEW   ++ +D +++  CR++PS  ++ ++ T  LPP EL+  P   
Sbjct: 481 SATQAILDSKHFIKEWPIWDN-NDTVLQFLCRINPSLVDVRSEQTTELPPGELVTVPLQA 539

Query: 470 TVDELKLIVECSLRDTYCMMEKVVVKEI-KMGQNQVFWGA-GDVWVRGWGLDLDTELRFE 527
           TV +LK  +E + RDTYC++   VV EI ++ ++    G+   + VRG G+DL+++L+ +
Sbjct: 540 TVYDLKQAIEETFRDTYCILSNFVVTEIDEVEEDMSLIGSCSALTVRGHGIDLESKLKCQ 599

Query: 528 GGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAAVA 586
           GG D W V C+C A+DDDGERM++CD+C+VWQHTRC  I D++ +P +F C  C    A
Sbjct: 600 GGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSNCCEEFA 658
Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZUA9|Y2181_ARATH PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=3 SV=1 Back     alignment and function description
>sp|Q9FMS5|MS1_ARATH PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1 Back     alignment and function description
>sp|P93310|M550_ARATH Uncharacterized mitochondrial protein AtMg00550 OS=Arabidopsis thaliana GN=AtMg00550 PE=2 SV=3 Back     alignment and function description
>sp|Q9FGN8|DYAD_ARATH Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2 Back     alignment and function description
>sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=Mus musculus GN=Mll5 PE=1 SV=2 Back     alignment and function description
>sp|Q8IZD2|MLL5_HUMAN Histone-lysine N-methyltransferase MLL5 OS=Homo sapiens GN=MLL5 PE=1 SV=1 Back     alignment and function description
>sp|Q1MTR4|CTI6_SCHPO Putative histone deacetylase complex subunit cti6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cti6 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
255573204679 DNA binding protein, putative [Ricinus c 0.991 0.855 0.502 1e-180
224099579662 predicted protein [Populus trichocarpa] 0.977 0.865 0.485 1e-166
224065092591 predicted protein [Populus trichocarpa] 0.883 0.876 0.438 1e-143
449512955 708 PREDICTED: LOW QUALITY PROTEIN: PHD fing 0.994 0.823 0.406 1e-142
449456755671 PREDICTED: PHD finger protein MALE MEIOC 0.988 0.862 0.409 1e-142
356552001 708 PREDICTED: PHD finger protein MALE MEIOC 0.996 0.824 0.391 1e-138
356499075 707 PREDICTED: PHD finger protein MALE MEIOC 0.996 0.826 0.400 1e-138
42562994 704 male meiotic MMD1 PHD-finger protein [Ar 0.998 0.830 0.383 1e-133
297841205 705 hypothetical protein ARALYDRAFT_894251 [ 1.0 0.831 0.376 1e-132
12322609653 PHD-finger protein, putative [Arabidopsi 0.907 0.814 0.372 1e-114
>gi|255573204|ref|XP_002527531.1| DNA binding protein, putative [Ricinus communis] gi|223533081|gb|EEF34840.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 328/653 (50%), Positives = 431/653 (66%), Gaps = 72/653 (11%)

Query: 1   MAITIFQSCKKRKRVPN-IFNINNFAT-QTSSLGFHGPFRENIRLFLREYAETEDYKVQN 58
           MAIT+F++CKKRKR P  I   + F++   SS+ F   FR+NI+ FL+  +++EDYK+  
Sbjct: 1   MAITVFEACKKRKRTPKKIICTSRFSSIDDSSMDFSRSFRDNIKEFLKRCSDSEDYKLGG 60

Query: 59  -NPIWCTLLLSESNGVVFPLYTLEESIKQSS----HPFCNLCRCVGWSHHFVCKRRYHFI 113
            NP+WCTLL++ES+GVVFPLY +EE I  SS     P C+ CR VGWSHHFV KR YH I
Sbjct: 61  TNPVWCTLLVNESSGVVFPLYIVEEFINNSSSSQHQPLCDFCRFVGWSHHFVSKRNYHLI 120

Query: 114 IPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHL 173
           +P  +KW KPL  D+L+  +H+LHGV+HCNGFGHLL I   +  SNYL  E +M+L+DHL
Sbjct: 121 VPDDDKWNKPLKKDSLKQENHLLHGVIHCNGFGHLLCIE-IESNSNYLNGEDLMSLWDHL 179

Query: 174 CTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQI 233
           C  L T+ ISVHD+  K  MDLRLL+ V YG SWFGKW YK C GSFGV +H+YNRAI+I
Sbjct: 180 CACLKTRDISVHDLSKKGSMDLRLLNGVAYGRSWFGKWGYKLCRGSFGVRKHEYNRAIEI 239

Query: 234 LSSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQWG--------VQRLE 285
           LSSLEL +I  DF    +G++IG+I+  Y + S+TQL+TISDLL +         +QR  
Sbjct: 240 LSSLELSKITTDFSKRKQGKLIGQIVQTYSDISETQLVTISDLLYFMLAFESKPLIQRKT 299

Query: 286 QAAKAIFTTLEQRNASINSK---------------------------------------- 305
             A A F++   R+ + N                                          
Sbjct: 300 ALALASFSSKSSRDQTTNQPKASLPSYPSDYKSLASFVAKLDARWPERRLERVVEVIFQI 359

Query: 306 -----AKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVHRKINPATKLAEFSLE 360
                A++ R++LRD  R+ IGDTGL+DF++KHI K+I+ N+++ R   P +KL EFSLE
Sbjct: 360 LQIHGARMLRQDLRDAVRQHIGDTGLIDFVLKHIDKVIVGNQVIVRANKPVSKLLEFSLE 419

Query: 361 DDANGEVIQTRTEPEYHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAILDCKN 420
           D ++G  ++ + +     STL  G +V  D+L LYKNVLLGYP+ H V++AAR ILDCK+
Sbjct: 420 DISDGATLEKKAQSHTDISTLKLGLNVRKDLLFLYKNVLLGYPDYHAVAIAARVILDCKH 479

Query: 421 FAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVEC 480
           F KEWQ+K S +D L+ L C+V PSY+ELA +LT PLPP E ++AP+  TV ELKL V+C
Sbjct: 480 FFKEWQYKSSNEDALLTLICQVRPSYDELANELTWPLPPGEPVMAPECATVFELKLTVQC 539

Query: 481 SLRDTYCMMEKVVVKEIKM--------GQNQVFWGAGD---VWVRGWGLDLDTELRFEGG 529
           +LRDTYC+M+  VV +I++        GQ+ +  G  D   VWVRG GLDLDT+LR++GG
Sbjct: 540 ALRDTYCVMDNFVVNDIEIGGLVAREEGQDLLKCGLEDGMKVWVRGSGLDLDTKLRYQGG 599

Query: 530 ADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACT 582
            +DWTVDC CGAKDDDGERMVACD C VWQHTRCNSI D+   P++F CR C 
Sbjct: 600 DNDWTVDCKCGAKDDDGERMVACDACHVWQHTRCNSIKDDASPPTLFLCRMCN 652

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099579|ref|XP_002311539.1| predicted protein [Populus trichocarpa] gi|222851359|gb|EEE88906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224065092|ref|XP_002301666.1| predicted protein [Populus trichocarpa] gi|222843392|gb|EEE80939.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449512955|ref|XP_004164188.1| PREDICTED: LOW QUALITY PROTEIN: PHD finger protein MALE MEIOCYTE DEATH 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456755|ref|XP_004146114.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552001|ref|XP_003544360.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356499075|ref|XP_003518369.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Glycine max] Back     alignment and taxonomy information
>gi|42562994|ref|NP_176791.2| male meiotic MMD1 PHD-finger protein [Arabidopsis thaliana] gi|75232134|sp|Q7X6Y7.1|MMD1_ARATH RecName: Full=PHD finger protein MALE MEIOCYTE DEATH 1 gi|31442870|gb|AAO16873.1| male meiotic MMD1 [Arabidopsis thaliana] gi|32140244|gb|AAP69944.1| male meiotic chromosome organization protein [Arabidopsis thaliana] gi|332196350|gb|AEE34471.1| male meiotic MMD1 PHD-finger protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841205|ref|XP_002888484.1| hypothetical protein ARALYDRAFT_894251 [Arabidopsis lyrata subsp. lyrata] gi|297334325|gb|EFH64743.1| hypothetical protein ARALYDRAFT_894251 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12322609|gb|AAG51303.1|AC026480_10 PHD-finger protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2065388 697 AT2G01810 "AT2G01810" [Arabido 0.476 0.400 0.491 1.8e-146
TAIR|locus:2013845 704 MMD1 "AT1G66170" [Arabidopsis 0.476 0.396 0.462 2.1e-139
TAIR|locus:2176317672 MS1 "AT5G22260" [Arabidopsis t 0.453 0.395 0.332 5.2e-72
TAIR|locus:2006882697 AT1G33420 "AT1G33420" [Arabido 0.283 0.238 0.381 5.7e-61
TAIR|locus:2828076196 AT2G07714 "AT2G07714" [Arabido 0.192 0.576 0.508 1.3e-24
TAIR|locus:2038021 1068 AT1G32810 [Arabidopsis thalian 0.081 0.044 0.520 9.9e-08
TAIR|locus:2139232 237 AT4G10600 "AT4G10600" [Arabido 0.081 0.202 0.470 7.9e-07
ZFIN|ZDB-GENE-030131-5895315 phf23b "PHD finger protein 23b 0.134 0.250 0.301 5.9e-05
ZFIN|ZDB-GENE-030131-4120 1375 mll5 "myeloid/lymphoid or mixe 0.146 0.062 0.347 8.6e-05
UNIPROTKB|C9JNE1230 MLL5 "Histone-lysine N-methylt 0.073 0.186 0.444 0.00016
TAIR|locus:2065388 AT2G01810 "AT2G01810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 748 (268.4 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
 Identities = 140/285 (49%), Positives = 192/285 (67%)

Query:     1 MAITIFQSCKKRKRVPNIFNINNFATQTSSLG---FH--GPFRENIRLFLREYAETEDYK 55
             MAIT + +  +R++ P +  IN+FA  +SS     F+    FR+NIR FLREYAE EDY 
Sbjct:     1 MAITAYDALTERQKAPKVLLINDFAISSSSSSPPFFNLAATFRDNIRSFLREYAEIEDYT 60

Query:    56 VQNNPIWCTLLLSESNGVVFPLYTLEESIKQSS-HPFCNLCRCVGWSHHFVCKRRYHFII 114
             +    +    L S++NGVVFPLY +E+ I  SS +P C+ CRC GW HH+V KR+YH II
Sbjct:    61 IDGATVSTIFLGSQANGVVFPLYIIEQQISDSSPNPLCDFCRCFGWGHHYVTKRKYHMII 120

Query:   115 PQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNLFDHLC 174
             P  ++W +PL  ++L    H++HG++HCNGFGHLL I+   D  N+L  +QIM+ +D LC
Sbjct:   121 PNRDEWNEPLKRESLTLSSHLMHGLIHCNGFGHLLCINTDLDDPNHLSGDQIMDFWDRLC 180

Query:   175 TILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTEHKYNRAIQIL 234
             + LHT+KIS+ D   K  MDLRLLH V YG  WFGKWDY F HGSFGV +  Y RAI  L
Sbjct:   181 STLHTRKISLDDTSKKGAMDLRLLHGVAYGRPWFGKWDYMFSHGSFGVKKDLYWRAILTL 240

Query:   235 SSLELKRIIHDFGNTGRGRVIGKIIHLYMNASDTQLITISDLLQW 279
             SS+E+ +I+ +   T +GRV+ KII  Y  ++++ L T+SDLL++
Sbjct:   241 SSIEVDKILEELSGTSKGRVMKKIIDFYRGSTESPLATLSDLLRF 285
GO:0003677 "DNA binding" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2013845 MMD1 "AT1G66170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176317 MS1 "AT5G22260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006882 AT1G33420 "AT1G33420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828076 AT2G07714 "AT2G07714" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038021 AT1G32810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139232 AT4G10600 "AT4G10600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5895 phf23b "PHD finger protein 23b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4120 mll5 "myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9JNE1 MLL5 "Histone-lysine N-methyltransferase MLL5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7X6Y7MMD1_ARATHNo assigned EC number0.38390.99820.8309yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00081285
hypothetical protein (662 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
pfam0062851 pfam00628, PHD, PHD-finger 7e-06
smart0024947 smart00249, PHD, PHD zinc finger 1e-05
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 537 CVCGAKDDDGERMVACDICQVWQHTRCNSIA--DNEVVPSVFKCRACTAA 584
           C    K DD   ++ CD C  W H  C        E+    + C  C   
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
KOG1844508 consensus PHD Zn-finger proteins [General function 99.95
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.54
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.44
KOG1973274 consensus Chromatin remodeling protein, contains P 98.26
KOG1844 508 consensus PHD Zn-finger proteins [General function 98.19
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.94
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.98
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.83
KOG0954 893 consensus PHD finger protein [General function pre 95.89
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.95
KOG0957 707 consensus PHD finger protein [General function pre 94.43
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 94.35
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 92.19
KOG1244336 consensus Predicted transcription factor Requiem/N 90.83
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 89.66
COG5141 669 PHD zinc finger-containing protein [General functi 89.16
KOG1512381 consensus PHD Zn-finger protein [General function 85.89
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 85.87
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 82.75
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information 
Probab=99.95  E-value=4.2e-29  Score=269.17  Aligned_cols=420  Identities=25%  Similarity=0.334  Sum_probs=289.4

Q ss_pred             CCCCcceEecCCCCcccCcceEEEeecCCcccCcccccccccCcccccceeeccCccceEeeecCCCCCcccchhhhhhh
Q 041583           90 PFCNLCRCVGWSHHFVCKRRYHFIIPQHEKWIKPLNMDTLEHCDHILHGVVHCNGFGHLLSISGSKDGSNYLCEEQIMNL  169 (586)
Q Consensus        90 ~~Cd~Cr~vGW~~H~V~~krYHFIip~~~~~~~~~~~~~~~~~~HllHGviH~NGfGHLl~vnG~eggS~~lsG~~iM~~  169 (586)
                      ++|++|++.||+.|.+|+++||||||++..+..+....+++.++|.+||.+|+||+||++++||+|.|+.          
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----------   82 (508)
T KOG1844|consen   13 PRCSHCCKFGWSPHLVANKKYEHIIPADAELFEESTSQSNEPSTASPHGTAHEPGKGVLLSLNGSEAGSE----------   82 (508)
T ss_pred             cccccccccCCcccccccccccccccCCcccccCCchhhccccccccccccccCCCCccccccccccccC----------
Confidence            9999999999999999999999999999999888888899999999999999999999999999999998          


Q ss_pred             HHHHhhhhhcceeEEeecccccccchhhhhccccCCccCCccccccccCCCCCCH-HHHHHHHHHhhccchhhhhcccCC
Q 041583          170 FDHLCTILHTQKISVHDVLVKRCMDLRLLHCVTYGCSWFGKWDYKFCHGSFGVTE-HKYNRAIQILSSLELKRIIHDFGN  248 (586)
Q Consensus       170 WDrlC~~L~~RkVSv~DvSkK~~mdlRlLh~va~g~~W~g~WGY~fg~Gsfgvt~-~~Y~~Aie~lss~pL~~~~~~~~~  248 (586)
                               +++++..|.+.+..|     |+++.+++|+++|+|+||.|+|+.+. +.|..++...++++++........
T Consensus        83 ---------~~~~~~c~c~~~~~~-----~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~~~~~~~~~  148 (508)
T KOG1844|consen   83 ---------AREISRCDCGLEDDM-----EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVERALALKRQ  148 (508)
T ss_pred             ---------cCcccccccccccCC-----CceeeCCcccCcccCceeeeecCCCCchhceeeeeccccccchhhhhcccc
Confidence                     899999999999999     99999999999999999999999999 999999999999999977776666


Q ss_pred             CCcccchhhhhhhccccccccccchhhhhc----------------------------cchhhHHHHHHHHHHHHH----
Q 041583          249 TGRGRVIGKIIHLYMNASDTQLITISDLLQ----------------------------WGVQRLEQAAKAIFTTLE----  296 (586)
Q Consensus       249 ~~~~~~~~~ii~~Y~~lS~~~L~t~~dL~r----------------------------Ws~~r~~~A~~~~v~vLr----  296 (586)
                      .........+..+|++.+...+.+..++++                            ++..++...+.-..++++    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (508)
T KOG1844|consen  149 SIEPEVLEPIRSTYRSLSQDSLDTTSDLKSFMLALISLSTKVKDHASDPELPKDRNISPSSTPFRCSTGNDEDIKKDSSD  228 (508)
T ss_pred             cccccccCccchhhhhhcccCCCchHHHHHHHhhccccCccccccccCcccccccccccccccccccccchhhhcccccc
Confidence            666778888888999999877766666655                            222222222222222211    


Q ss_pred             -------------------------------hhccccCCCCccchHHHHHHHhcccCCcchHHHHHhhcCCeeccCcEEE
Q 041583          297 -------------------------------QRNASINSKAKISRRELRDEARKKIGDTGLLDFMIKHIHKIILDNRIVH  345 (586)
Q Consensus       297 -------------------------------~~~a~~~~~~wvsr~~LR~aark~IGdtgLLD~~LK~l~~~~vg~~vvr  345 (586)
                                                     ....  ....|+....+|...+..|+|++..+.......+...++..++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (508)
T KOG1844|consen  229 PDSDAVTSGSLGPELKELLIRRREDAGSFLLSNEV--KDQQQVVCVRVRTSCRPDIEDKEYSNEDNQGESDVLNGDVSSR  306 (508)
T ss_pred             ccccccccccccchhhHHHHhhhhhhhhhhhhhhc--cccccccceeeeeccCcccccccchhhccccccccccCccccc
Confidence                                           1110  1144555555555555555555555555555555555555555


Q ss_pred             EeecCCCCceeEEeccCCCcccccCCCCCc----------ccccCCCChhhHHHHHHHHHHhhhcCCCCcchHHHHHHHh
Q 041583          346 RKINPATKLAEFSLEDDANGEVIQTRTEPE----------YHTSTLMPGQDVYADVLTLYKNVLLGYPESHTVSLAARAI  415 (586)
Q Consensus       346 rr~Np~T~~lEy~Le~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~Dl~~lY~~vL~~yp~~~~~~~Aa~~i  415 (586)
                      +..++.+..+.+.+-..+.....+....-+          ...-...+ .-+..|+..++..++..+++......+.+.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (508)
T KOG1844|consen  307 KSVHSKGRKLPQYLNELDFGNKAENRFQLEKRSLGVAKPKPSFTEHSP-QYVGSDLLGLSTRLPLVEPHSDRRKVASQLI  385 (508)
T ss_pred             cccccccccccccccccchhhhcccchhhhhhchhhhcccccccCCCc-cccccccccccccceeeccCCcccccccccc
Confidence            555555444444333332211111110000          00001112 4456666677777666677777777888999


Q ss_pred             hcccccccccCccCCCCCcceEEEEEEeeCcchhhhccCCCCCCCceeeeCCCCCHHHHHHHHHhhhhhhhhceeeeeee
Q 041583          416 LDCKNFAKEWQFKESEDDNLMRLKCRVSPSYNELATQLTRPLPPAELIVAPKDVTVDELKLIVECSLRDTYCMMEKVVVK  495 (586)
Q Consensus       416 LD~K~fvK~y~~~~~~~~~~l~~~c~v~~~~~~~~~~~~~~~pP~Elv~lp~~aTv~eLK~ea~r~frD~Y~~~r~f~~~  495 (586)
                      ++.|.+.+.|....      ...-|.+-+...+...+.....+++.+...|+.+|+..++..+...+.+.| ....+. .
T Consensus       386 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~  457 (508)
T KOG1844|consen  386 LRAKRFDKAVRGMH------KLRAIRIAPNLEEVRPEAATVSDKPILKEKPPEATSASLKSPEVEELLGSY-ETTRIR-K  457 (508)
T ss_pred             cccccccccccchh------hhhhcccCchhhhhhhhhhhccCCccccccCcccccccccchhHHHhhcce-eeeccC-c
Confidence            99999999855322      333344444333332222345889999999999999999988888888888 111111 0


Q ss_pred             eeecccccceeccc-eeEEeccccCccccccccCCCCCCcEEeecCCCCCCCC
Q 041583          496 EIKMGQNQVFWGAG-DVWVRGWGLDLDTELRFEGGADDWTVDCVCGAKDDDGE  547 (586)
Q Consensus       496 ~l~~g~e~g~v~sg-~v~vrG~~~~~e~~~~~e~g~d~~~VrCiCG~~dDDGe  547 (586)
                      +.   ..+.....+ .+.+.+...+.....+.+.+...|.+.|.|+..++|++
T Consensus       458 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (508)
T KOG1844|consen  458 EL---DKKNLKGECPRFEVKSFTRHEEKEVKDERPKDSRRVDCKCGATDDDGE  507 (508)
T ss_pred             ch---hhccccccceeeeeeeeehhhhhhhhhhCCchhhhHhhhccCcCCCCC
Confidence            00   002222234 34444444445566677888899999999999998885

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
1wee_A72 Solution Structure Of Phd Domain In Phd Finger Fami 3e-15
2lv9_A98 Solution Nmr Structure Of The Phd Domain Of Human M 5e-04
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family Protein Length = 72 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 38/55 (69%)
Query: 527 EGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRAC 581
           E G D+W VDC CG KDDDGERM+ACD C VW HTRC  I + + +PS F C  C
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 63
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
1wee_A72 PHD finger family protein; structural genomics, PH 1e-21
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-13
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-13
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 3e-13
1wew_A78 DNA-binding family protein; structural genomics, P 3e-11
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 7e-11
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 5e-10
1wem_A76 Death associated transcription factor 1; structura 2e-09
1we9_A64 PHD finger family protein; structural genomics, PH 4e-09
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 3e-07
3kv5_D 488 JMJC domain-containing histone demethylation prote 1e-04
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 3e-04
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 5e-04
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 8e-04
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
 Score = 88.0 bits (218), Expect = 1e-21
 Identities = 33/56 (58%), Positives = 38/56 (67%)

Query: 527 EGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACT 582
           E G D+W VDC CG KDDDGERM+ACD C VW HTRC  I + + +PS F C  C 
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI 64
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
1wee_A72 PHD finger family protein; structural genomics, PH 99.6
1wew_A78 DNA-binding family protein; structural genomics, P 99.39
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.38
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.37
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.35
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.3
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.29
1we9_A64 PHD finger family protein; structural genomics, PH 99.28
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.28
1wem_A76 Death associated transcription factor 1; structura 99.17
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.12
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.08
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.9
3kv5_D 488 JMJC domain-containing histone demethylation prote 98.86
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.78
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.75
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.74
1weu_A91 Inhibitor of growth family, member 4; structural g 98.74
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.72
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.7
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.65
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.64
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.51
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.47
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.07
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 97.83
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 97.74
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 97.72
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 97.7
2yt5_A66 Metal-response element-binding transcription facto 97.68
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 97.65
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 97.64
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.63
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 97.52
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 97.49
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 97.43
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.39
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.22
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.18
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.09
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 97.06
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.0
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 96.66
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 96.66
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 96.62
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 96.21
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 95.69
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 92.01
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 90.11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 87.89
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 85.46
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 82.04
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
Probab=99.60  E-value=1.5e-16  Score=130.93  Aligned_cols=63  Identities=52%  Similarity=1.106  Sum_probs=56.2

Q ss_pred             ccccccCCCCCCcEEeecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCCC
Q 041583          522 TELRFEGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTAA  584 (586)
Q Consensus       522 ~~~~~e~g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~~  584 (586)
                      ...++|++++++.++|+||..++||++|||||.|+.|||..|+||+..+..|+.|+|+.|.++
T Consensus         4 ~~~~~e~~~~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~   66 (72)
T 1wee_A            4 GSSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             CSCCCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             ccccccCCCCCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence            345778888999999999998888989999999999999999999976677899999999753
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 1e-16
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-10
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-10
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-09
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 4e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-05
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 4e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 4e-04
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 0.001
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.4 bits (177), Expect = 1e-16
 Identities = 33/57 (57%), Positives = 38/57 (66%)

Query: 527 EGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA 583
           E G D+W VDC CG KDDDGERM+ACD C VW HTRC  I + + +PS F C  C  
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 99.36
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.16
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.05
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.92
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.87
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.61
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.53
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.52
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.38
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.09
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.84
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=8.9e-14  Score=112.05  Aligned_cols=57  Identities=58%  Similarity=1.243  Sum_probs=50.9

Q ss_pred             cCCCCCCcEEeecCCCCCCCCCeEeecCCCccccccccccCCCCCCCCceecCCCCC
Q 041583          527 EGGADDWTVDCVCGAKDDDGERMVACDICQVWQHTRCNSIADNEVVPSVFKCRACTA  583 (586)
Q Consensus       527 e~g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvGI~~~~~~p~~f~C~~C~~  583 (586)
                      |++.++|.++|+|+..++++..||+||.|+.|||..|++++..+..+..|+|+.|..
T Consensus         9 e~~~~~~~~~C~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~   65 (72)
T d1weea_           9 ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE   65 (72)
T ss_dssp             SCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred             ccCCCCCeEEeeCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcC
Confidence            566788999999999888888999999999999999999987766678999999964
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure