Citrus Sinensis ID: 041588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MDTREEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEHHEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHEEEEEEEccccccHHcHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHcccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdtreemqineeanistsvsngcvddrgrtadkrttggwkaspfIIVNEVAERLAFFAIAVNMTAYLVREMHqslptagthvtDWIGAAYVLTILGAFLadaylgqpalKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSgsldslrppackerpcvevnggqnGFLLCALGLialgtrdikpcvssfgadqydeadEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEqkgwsvgfgiptaFTICSIIIVAAgfpyyryqkpigsslTRFVQVIVSYVRNHlegveveheddlyevttkesdifgarklshssqfrfldkaavitdpetvrkdRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVmdrnlgsnftiptgcvpiFSAINALILVPIYEKVIVPILRkltgqtqcdVKTILSHLWHSAEVFTYVGQLEFfyneatdgtrsISTAIFLSEIGLGSCLSNALVKIIERatggqeegwlrndlnmsklDYFYWILAGINGLNFFVYFWVAWRYKGR
Flexible Loop (DISEMBL)
mdtreemqineeanistsvsngcvddrgrtadkrttggwkaspfIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNhlegveveheddlyeVTTKESDIFGarklshssqfrfldkaavitdpetvrkdrwrlCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERatggqeegwlrnDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Low Complexity Region (SEG)
MDTREEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Disordered region (IsUnstruct)
***********************************TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY***
Disordered Region (DISOPRED)
***********************VDDR**T******GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPP***********GGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHE**********************SQFRFLD******************CTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQ****VKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Disordered Region (DISEMBL)
*********NEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Disordered Region (DISPRO)
********************NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTREEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQCDVKTILSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
Q9M390	570	Peptide transporter PTR1	yes	no	0.942	0.892	0.400	1e-117
P46032	585	Peptide transporter PTR2	no	no	0.957	0.883	0.396	1e-113
Q9LFB8	570	Peptide transporter PTR5	no	no	0.924	0.875	0.403	1e-113
Q93Z20	590	Probable peptide/nitrate	no	no	0.95	0.869	0.383	1e-106
Q9M1I2	555	Probable peptide/nitrate	no	no	0.883	0.859	0.339	3e-91
Q84WG0	545	Probable peptide/nitrate	no	no	0.883	0.875	0.349	7e-91
Q9SX20	596	Probable nitrite transpor	no	no	0.905	0.820	0.351	4e-86
P0CI03	575	Putative peptide/nitrate	no	no	0.914	0.859	0.346	8e-86
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.888	0.819	0.329	3e-85
Q8VZR7	583	Probable peptide/nitrate	no	no	0.927	0.859	0.331	5e-83

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 329/579 (56%), Gaps = 70/579 (12%)

Query: 11  EEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE 70
           EE ++ T   +G VD     A+K  TG WKA  FI+ NE  ERLA++ +  N+  YL   
Sbjct: 2   EEKDVYTQ--DGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESR 59

Query: 71  MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC 130
           ++Q   TA  +VT+W G  Y+  ++GAF+ADAYLG               R+ T+  F  
Sbjct: 60  LNQGNATAANNVTNWSGTCYITPLIGAFIADAYLG---------------RYWTIATFVF 104

Query: 131 IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190
           IY  GM LLT+S S+  L+P  C    C   N  Q      AL +IALGT  IKPCVSSF
Sbjct: 105 IYVSGMTLLTLSASVPGLKPGNCNADTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSF 163

Query: 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC 250
           GADQ+DE DE E I+K  FFNWF+F+IN+GA+   TVLV+IQ   GW  GFG+PT   + 
Sbjct: 164 GADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVI 223

Query: 251 SIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFG 310
           ++     G  +YR Q+P GS LTR  QVIV+  R     V  E +  L+E    ES+I G
Sbjct: 224 AVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVP-EDKSLLFETADDESNIKG 282

Query: 311 ARKLSHSSQFRFLDKAAVITDPETVRK---DRWRLCTLTQVEELKSFIRILPIWASTLDL 367
           +RKL H+   +F DKAAV +  ++++    + WRLC++TQVEELKS I +LP+WA+ +  
Sbjct: 283 SRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVF 342

Query: 368 AISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLT 427
           A  ++Q+ST F+ Q   MD+++G NF IP+  + +F  ++ L   P+Y++ I+P+ RK T
Sbjct: 343 ATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query: 428 ----GQTQC----------------------------------DVKTI-LSHLWH----- 443
               G TQ                                   D K I +S  W      
Sbjct: 403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYL 462

Query: 444 ---SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQ-E 499
               AEVFT++GQLEFFY++A D  RS+ +A+ L+ + LG+ LS  LV ++ + T    +
Sbjct: 463 LIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGK 522

Query: 500 EGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYK 538
            GW+ ++LN   LDYF+++LA ++ LNF VY W++ RYK
Sbjct: 523 PGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYK 561

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/588 (39%), Positives = 326/588 (55%), Gaps = 71/588 (12%)

Query: 5   EEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMT 64
           EE  I +E  +     +G VD  G    K  TG WKA PFI+ NE  ERLA++ IA N+ 
Sbjct: 13  EEGLILQEVKLYAE--DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLI 70

Query: 65  AYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124
            YL  ++HQ   +A T+VT W G  Y+  ++GA LADAY G               R+ T
Sbjct: 71  TYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWG---------------RYWT 115

Query: 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIK 184
           +  FS IY +GM  LT+S S+ +L+P  C    C      Q       L LIALGT  IK
Sbjct: 116 IACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIK 175

Query: 185 PCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP 244
           PCVSSFGADQ+D+ D +E ++K  FFNWF+F+IN+GA+   ++LV+IQE +GW +GFGIP
Sbjct: 176 PCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIP 235

Query: 245 TAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTK 304
           T F   +I     G P YR+QKP GS +TR  QV+V+  R     V  E    LYE   K
Sbjct: 236 TVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVP-EDATLLYETQDK 294

Query: 305 ESDIFGARKLSHSSQFRFLDKAAVITDPETVRKD---RWRLCTLTQVEELKSFIRILPIW 361
            S I G+RK+ H+   ++LDKAAVI++ E+   D    WRLCT+TQVEELK  IR+ PIW
Sbjct: 295 NSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIW 354

Query: 362 ASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVP 421
           AS +  +  +AQ+ST F+ Q   M+  +GS F +P   +  F   + +I VP+Y++ IVP
Sbjct: 355 ASGIIFSAVYAQMSTMFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVP 413

Query: 422 ILRKLT----------------------------------------GQTQCDVKTILSHL 441
           + RK T                                        G  +      +S L
Sbjct: 414 LARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVL 473

Query: 442 WH--------SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIER 493
           W         +AEVF ++GQLEFFY+++ D  RS+ +A+ L    LG+ LS+ ++ ++  
Sbjct: 474 WQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTY 533

Query: 494 -ATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
             T   +EGW+ ++LN   LDYF+W+LAG++ +N  VYF+ A RYK +
Sbjct: 534 FTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  410 bits (1053), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/568 (40%), Positives = 315/568 (55%), Gaps = 69/568 (12%)

Query: 21  NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
           +G +D   + A+K  TG WKA  FI+  E  ERLA++ ++ N+  YL ++M+    +A  
Sbjct: 11  DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASK 70

Query: 81  HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
            V++W G  Y   ++GAF+ADAYLG               R+ T+  F  IY  GM LLT
Sbjct: 71  SVSNWSGTCYATPLIGAFIADAYLG---------------RYWTIASFVVIYIAGMTLLT 115

Query: 141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200
           +S S+  L P  C    C     GQ      AL LIALGT  IKPCVSSFGADQ+D+ DE
Sbjct: 116 ISASVPGLTP-TCSGETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDE 173

Query: 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260
           KE   K  FFNWF+F IN+GA+   +VLV+IQ   GW  G G+PT     +++   AG  
Sbjct: 174 KEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSN 233

Query: 261 YYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQF 320
           +YR QKP GS LTR +QVIV+  R     +  E E  LYE    ES I G+RKL H+   
Sbjct: 234 FYRLQKPGGSPLTRMLQVIVASCRKSKVKIP-EDESLLYENQDAESSIIGSRKLEHTKIL 292

Query: 321 RFLDKAAVITDPET---VRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTF 377
            F DKAAV T+ +     +   W+LCT+TQVEELK+ IR+LPIWA+ +  A  ++Q+ T 
Sbjct: 293 TFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTV 352

Query: 378 FLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQ----TQCD 433
           F+ Q   +D+++G NF IP+  + +F  ++ L   P+Y+K+IVP  RK TG     TQ  
Sbjct: 353 FVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQ 412

Query: 434 ------VKTILSHL-----------------------------WH--------SAEVFTY 450
                 V +I S +                             W          AEVFT+
Sbjct: 413 RIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTF 472

Query: 451 VGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERAT-GGQEEGWLRNDLNM 509
           +GQLEFFY++A D  RS+ +A+ L+ I  G+ LS  LV ++ + T  G   GW+  +LN 
Sbjct: 473 IGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNN 532

Query: 510 SKLDYFYWILAGINGLNFFVYFWVAWRY 537
             LDYF+W+LAG++ LNF VY W+A  Y
Sbjct: 533 GHLDYFFWLLAGLSFLNFLVYLWIAKWY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/582 (38%), Positives = 324/582 (55%), Gaps = 69/582 (11%)

Query: 1   MDTREEMQINEEAN-----ISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLA 55
           +D  E +   EE N     +S++  +G +D  G    K+ TG WKA PFI+ NE  ERLA
Sbjct: 13  LDVEESLLTQEEVNNHLTGLSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLA 72

Query: 56  FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI 115
           ++ IA N+  Y   E+H+S  +A + V  W G  Y+  ++GA +AD+Y            
Sbjct: 73  YYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSY------------ 120

Query: 116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERP---CVEVNGGQNGFLLCA 172
               GR+ T+  FS IY +GM LLT+S SL  L+P AC       C      Q       
Sbjct: 121 ---WGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTG 177

Query: 173 LGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ 232
           L LIALGT  IKPCVSSFGADQ+D+ D +E ++K  FFNWF+F+IN+G+    T+LV++Q
Sbjct: 178 LYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQ 237

Query: 233 EQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEV 292
           E  GW +GF IPT F   SI     G P YR+QKP GS +TR  QV+V+  R  L+    
Sbjct: 238 ENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRK-LKLNLP 296

Query: 293 EHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVR---KDRWRLCTLTQVE 349
           E    LYE   K S I G+RK+ H+  ++FLDKAAVI++ E+      + W+LCT+TQVE
Sbjct: 297 EDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVE 356

Query: 350 ELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINAL 409
           E+K+ IR+ PIWAS +  ++ ++Q+ST F+ Q   M+R + S F IP     +F  +  L
Sbjct: 357 EVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRS-FEIPPASFGVFDTLIVL 415

Query: 410 ILVPIYEKVIVPILRKLTG----------------------QTQCDVKTI---------- 437
           I +PIY++ +VP +R+ TG                           V+T+          
Sbjct: 416 ISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVA 475

Query: 438 LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVK 489
           +S  W          AEVF ++G++EFFY+E+ D  RS+ +A+ L    +GS LS+ ++ 
Sbjct: 476 MSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILT 535

Query: 490 IIERATG-GQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVY 530
           ++   T  G ++GW+ +DLN   LDYF+W+L  +  +N  VY
Sbjct: 536 LVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVY 577

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  336 bits (862), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 304/566 (53%), Gaps = 89/566 (15%)

Query: 26  DRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW 85
           D     +KRT GGW A+ FIIV E+AER AF+ +A N+  +L  E+ QS  TA  ++  W
Sbjct: 3   DSTSLINKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTW 62

Query: 86  IGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSL 145
           IG + +  ILGAFLAD+ LG               RF+T+++ S IY +G+V+L +S ++
Sbjct: 63  IGVSCMFPILGAFLADSILG---------------RFKTVLLTSFIYLLGIVMLPLSVTV 107

Query: 146 DSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ 205
            + R    +E+               AL ++A+G    KPCV +F ADQ+ EA+ +E   
Sbjct: 108 VARR---MREK-----------VFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAA 153

Query: 206 KYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ 265
           K  FFN+++ AI + +   +  L++IQE+  WS+GF I     + +I+I   G P YR Q
Sbjct: 154 KTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQ 213

Query: 266 KPIGSSLTRFVQVIVSYVRN-------HLEGVEVEHEDDLYEVTTKESDIFGARKLSHSS 318
            P+GS  TR  QV+V+ ++        H  G+  E ED+    +T  + ++    L+ ++
Sbjct: 214 VPVGSPFTRVAQVMVAALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVY---LLARTN 270

Query: 319 QFRFLDKAAVITDPETVR-KDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTF 377
           QFRFLDKA +I + +  + ++ WRLCT+ QVEE+K  +R++PIW S +    +  QL+TF
Sbjct: 271 QFRFLDKATIIDEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTF 330

Query: 378 FLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ------ 431
           FL Q ++MDR +G++FTIP         +  LIL+P+Y++V VP++RK+T          
Sbjct: 331 FLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQ 390

Query: 432 ------------------CDVKTI-----------------LSHLW--------HSAEVF 448
                              + K +                 +S LW           +VF
Sbjct: 391 RIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVF 450

Query: 449 TYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLN 508
           T VG  E FY++  +  RSI  AIF+S +G+GS +S  ++  ++  +    E WL N+LN
Sbjct: 451 TIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEEWLVNNLN 510

Query: 509 MSKLDYFYWILAGINGLNFFVYFWVA 534
            + LDY+YWI+A +N ++   Y ++A
Sbjct: 511 RAHLDYYYWIIASLNAVSLCFYLFIA 536

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  335 bits (858), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 298/583 (51%), Gaps = 106/583 (18%)

Query: 5   EEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMT 64
           EE  I EE  +     +G +D  G    K+TTG WKA PFI  NE  ERLA++ IA N+ 
Sbjct: 14  EESLIQEEVKLYAE--DGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLI 71

Query: 65  AYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT 124
            Y   E+H++  +A  HV  W G  Y+  ++GA +ADAY                GR+ T
Sbjct: 72  TYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAY---------------WGRYWT 116

Query: 125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIK 184
           +  FS IY  GMV LT+S S+  L+P  C    C      Q+  L   L LIALGT  IK
Sbjct: 117 IACFSAIYFTGMVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIK 176

Query: 185 PCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP 244
           PCVSSFGADQ+D+ D  E ++K  FFNWF+F IN+GA    TVLV+IQE  GW +GF IP
Sbjct: 177 PCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIP 236

Query: 245 TAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIV-SYVRNHLEGVEVEHEDDLYEVTT 303
           T F   + +    G P YR+QKP GS +T   QV+V +Y +++L+         + E +T
Sbjct: 237 TVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLK---------VPEDST 287

Query: 304 KESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWAS 363
            E D                              + W+LCT+TQVEE+K  +R++PIWAS
Sbjct: 288 DEGD---------------------------ANTNPWKLCTVTQVEEVKILLRLVPIWAS 320

Query: 364 TLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPIL 423
            +  ++  +Q+ T F+ Q   M R +G  F IP   + +F   + LI VPIY++VIVP++
Sbjct: 321 GIIFSVLHSQIYTLFVQQGRCMKRTIGL-FEIPPATLGMFDTASVLISVPIYDRVIVPLV 379

Query: 424 RKLTG---------------------------------QTQCDVKTI-------LSHLWH 443
           R+ TG                                 Q   D+  +       L+  W 
Sbjct: 380 RRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQ 439

Query: 444 --------SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERAT 495
                   +A VF +VG++EFFY ++ D  RS+ +A  L    LG+ LS+ ++ ++   +
Sbjct: 440 IPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS 499

Query: 496 GGQEEGWLRND-LNMSKLDYFYWILAGINGLNFFVYFWVAWRY 537
           G  ++ W+ +D +N   LDYF+W+L  +  +N  V+ + + +Y
Sbjct: 500 G--KDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKY 540

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 292/561 (52%), Gaps = 72/561 (12%)

Query: 33  KRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVL 92
            R  GG    PFI  NE+ E+LA      NM +YL  ++H  L  A   +T++ G + + 
Sbjct: 21  NRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLT 80

Query: 93  TILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA 152
            +LGAF+AD++                GRF T+   S IY +GM LLT+S  + +LRPP 
Sbjct: 81  PLLGAFIADSF---------------AGRFWTITFASIIYQIGMTLLTISAIIPTLRPPP 125

Query: 153 CK-ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN 211
           CK E  CV  +  Q   L  AL L ALG+  I+PCV +FGADQ+DE+D  +  + + +FN
Sbjct: 126 CKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185

Query: 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSS 271
           W++F +    +  +TVLV+IQ+  GW +G GIPT     S+I    GF  YR+  P GS 
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query: 272 LTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITD 331
            TR +QV V+  R     + V     LY     ++ I    KL+H+    FLDKAA++T+
Sbjct: 246 FTRLIQVGVAAFRKRKLRM-VSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304

Query: 332 PETVR----KDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDR 387
            + ++     + WRL T+ +VEELKS IR+ PI AS + L  ++AQ  TF L QA  M+R
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364

Query: 388 NLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ---------------- 431
           +L ++F IP G + +F+ +  L  +  Y++V V + RK TG  +                
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424

Query: 432 --------CDVK---------------TI--LSHLW-------HS-AEVFTYVGQLEFFY 458
                    +VK               TI  +S LW       H  AE F  +G LEFFY
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFY 484

Query: 459 NEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQE-EGWL-RNDLNMSKLDYFY 516
           ++A +  RS +TA+F   I +G+ +S  LV ++ + +   +   WL  N+LN  +L+YFY
Sbjct: 485 DQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFY 544

Query: 517 WILAGINGLNFFVYFWVAWRY 537
           W++  +  +N   Y W A  Y
Sbjct: 545 WLITVLQAVNLVYYLWCAKIY 565

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  318 bits (814), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 294/565 (52%), Gaps = 71/565 (12%)

Query: 19  VSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTA 78
           V +  +D RGR   +  TG W+A+ FII  E +ERL++F +A N+  YL   ++Q L  A
Sbjct: 22  VLDSSLDSRGRVPLRARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMA 81

Query: 79  GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVL 138
             +V  W G   ++ +LG F+ADAYLG               R+ T++V + IY +G+VL
Sbjct: 82  IRNVNYWSGVTTLMPLLGGFIADAYLG---------------RYATVLVATTIYLMGLVL 126

Query: 139 LTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198
           LT+S  +  L+P  C +  CVE           A+ LI++GT   KP + SFGADQ+D+ 
Sbjct: 127 LTMSWFIPGLKP--CHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDD 184

Query: 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258
             +E   K  FFNW+  ++  G +  +T + YI+++ GW V   I T     S+II   G
Sbjct: 185 HVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIG 244

Query: 259 FPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDD---LYEVTTKESDIFGARKLS 315
            P+YRY+ P GS LT  +QV V+ +        + +  D   L+EV+  +++    R L 
Sbjct: 245 KPFYRYRTPSGSPLTPILQVFVAAIAKR----NLPYPSDPSLLHEVS--KTEFTSGRLLC 298

Query: 316 HSSQFRFLDKAAVITDPETV---RKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFA 372
           H+   +FLDKAA+I D   +   ++  WRL TLT+VEE K  I ++PIW STL   I   
Sbjct: 299 HTEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICAT 358

Query: 373 QLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQT-- 430
           Q STFF+ QA  MDR++G  FT+P   +   +A+  +I + +YEK++VP+LR +T     
Sbjct: 359 QASTFFIKQAITMDRHIG-GFTVPPASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRG 417

Query: 431 ------------------------------QCDVKTILSHLWHS--------AEVFTYVG 452
                                         + +    +S +W +        A+ FT VG
Sbjct: 418 INILQRIGTGMIFSLITMIIAALVEKQRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVG 477

Query: 453 QLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIER-ATGGQEEGWLRNDLNMSK 511
             E+FY++  D  RS+  A +LS IG  S L+N L+  ++  A     + W   DLN S+
Sbjct: 478 LQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSR 537

Query: 512 LDYFYWILAGINGLNFFVYFWVAWR 536
           LD FYW LAG+   N  V+  VA R
Sbjct: 538 LDRFYWFLAGVIAANICVFVIVAKR 562

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  316 bits (810), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 289/552 (52%), Gaps = 72/552 (13%)

Query: 21  NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
           +G VD RG    +  TG WKA  F++V EV ER+A++ I+ N+  Y+  ++HQ    +  
Sbjct: 13  DGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSN 72

Query: 81  HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
           +VT+W+G +++  ILGA++ADA+ G               R+ T V+ S IY +GM LLT
Sbjct: 73  NVTNWVGTSWLTPILGAYVADAHFG---------------RYITFVISSAIYLLGMALLT 117

Query: 141 VSGSLDSLRPPACKE---RPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197
           +S SL  L+PP C       C + +  Q      AL  +A+GT   KP +S+ GADQ+DE
Sbjct: 118 LSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDE 177

Query: 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257
            D K+ I K+ FFNW+ F+I  G  F  TVLVY+Q+  GW++G+G+ T     SI I   
Sbjct: 178 FDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLL 237

Query: 258 GFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHS 317
           G   YR++ P+GS  T+  +VIV+ +R   E +  +     YE+   E     A  +  +
Sbjct: 238 GTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSD-STRFYELPPMEYASKRAFPIHST 296

Query: 318 SQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTF 377
           S  RFL++A++    +T    +WRLCT+T+VEE K  +++LP+   T   ++  AQ+ T 
Sbjct: 297 SSLRFLNRASL----KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTL 352

Query: 378 FLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG--------- 428
           F+ Q   +DR L +NF+IP   +  F+  + L+ + IY++V V  +RKLTG         
Sbjct: 353 FIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQ 412

Query: 429 ----------------------------------QTQCDVK----TILSH--LWHSAEVF 448
                                             QT   +     T+L    L   A+ F
Sbjct: 413 RMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAF 472

Query: 449 TYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLN 508
             + +LEFFY++A +  +S+ T+   + + +G  +S+ L+  + + T  Q  GW++N+LN
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLN 532

Query: 509 MSKLDYFYWILA 520
            S+LD +Y   A
Sbjct: 533 ESRLDNYYMFFA 544

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  308 bits (790), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 302/577 (52%), Gaps = 76/577 (13%)

Query: 11  EEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE 70
           E A + T   +G VD +GR      TG W+A  F++  E  ER+AF+ IA N+  YL + 
Sbjct: 2   EAAKVYTQ--DGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKR 59

Query: 71  MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC 130
           +H+   ++  +V +W GA ++  I GA++AD+Y+G               RF T    S 
Sbjct: 60  LHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIG---------------RFWTFTASSL 104

Query: 131 IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190
           IY +GM+LLT++ ++ SLRP  C+   C + +  Q  F   +L  IA+G    KP +S+F
Sbjct: 105 IYVLGMILLTMAVTVKSLRP-TCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTF 163

Query: 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC 250
           GADQ+D    +E  QK  FFNW+ F+  +GA+F    LVYIQE  GW +G+GIPT   + 
Sbjct: 164 GADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLV 223

Query: 251 SIIIVAAGFPYYRYQKPIGSSLTR-FVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIF 309
           S+++   G P+YR++     +L +  VQV ++  +N       +H  +LYE+ +      
Sbjct: 224 SLVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHL-ELYELDSHYYKSN 282

Query: 310 GARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAI 369
           G  ++ H+  FRFLDKAA+ T            CT+T+VE  K  + ++ IW  TL  + 
Sbjct: 283 GKHQVHHTPVFRFLDKAAIKTSSRVP-------CTVTKVEVAKRVLGLIFIWLVTLIPST 335

Query: 370 SFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQ 429
            +AQ++T F+ Q   +DR +GSNF IP   +  F  ++ L+ VP+Y++  VP +RK TG 
Sbjct: 336 LWAQVNTLFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGN 395

Query: 430 TQ------------------------CDVKTI----------------LSHLW------- 442
            +                         +VK +                +S  W       
Sbjct: 396 PRGITLLQRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSL 455

Query: 443 -HSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATG-GQEE 500
               +VF  +G LEFFY+++ +  +S+ T  F S IGLG+ L++ LV +I++ T  G  +
Sbjct: 456 LGIGDVFNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGK 515

Query: 501 GWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY 537
            W+ N+LN S+LDY+Y  L  I+ +N  ++ W A +Y
Sbjct: 516 SWIGNNLNDSRLDYYYGFLVVISIVNMGLFVWAASKY 552

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
224082938	619	predicted protein [Populus trichocarpa]	0.953	0.831	0.652	0.0
302142577	1198	unnamed protein product [Vitis vinifera]	0.962	0.434	0.649	0.0
359492707	581	PREDICTED: peptide transporter PTR1-like	0.955	0.888	0.652	0.0
225458129	620	PREDICTED: peptide transporter PTR5-like	0.959	0.835	0.643	0.0
224066064	571	predicted protein [Populus trichocarpa]	0.938	0.887	0.652	0.0
317106671	616	JHL18I08.8 [Jatropha curcas]	0.966	0.847	0.634	0.0
255538802	603	peptide transporter, putative [Ricinus c	0.972	0.870	0.628	0.0
255538800	584	peptide transporter, putative [Ricinus c	0.955	0.883	0.518	1e-163
356509652	565	PREDICTED: LOW QUALITY PROTEIN: peptide	0.912	0.872	0.565	1e-162
302781488	569	hypothetical protein SELMODRAFT_97812 [S	0.924	0.876	0.416	1e-119

>gi|224082938|ref|XP_002306899.1| predicted protein [Populus trichocarpa] gi|222856348|gb|EEE93895.1| predicted protein [Populus trichocarpa]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/569 (65%), Positives = 435/569 (76%), Gaps = 54/569 (9%)

Query: 11  EEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE 70
           EE+  +T VSNGCVD RGR ADKRTTGGWKA+PFIIVNEVAERLAF+AIAVNM AYLV +
Sbjct: 35  EESMGTTLVSNGCVDIRGRIADKRTTGGWKAAPFIIVNEVAERLAFYAIAVNMVAYLVFQ 94

Query: 71  MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC 130
           MHQSLP A THVTDWIGAA+VLT+ GAF ADAYLG               RF+T+++FSC
Sbjct: 95  MHQSLPDAATHVTDWIGAAFVLTLFGAFCADAYLG---------------RFKTIIIFSC 139

Query: 131 IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190
           IY+VGMVLLT+S S+DSLRPP CK RPC +  GGQ  FL  AL LIALGT  IKPCVS+F
Sbjct: 140 IYAVGMVLLTLSASIDSLRPPQCKVRPCPKATGGQTWFLYGALALIALGTGGIKPCVSTF 199

Query: 191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC 250
           GADQ+DEAD+KE  +KY FFNWFF AINMGA+FGITV VYIQ+ KGW+ GFG+PT   + 
Sbjct: 200 GADQFDEADKKEVPKKYAFFNWFFLAINMGALFGITVFVYIQDNKGWAWGFGLPTGAMVI 259

Query: 251 SIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFG 310
           SI+I+ AG  +YR+Q+P+GS  TRFVQV+ + VRNHL GV V H+ +LYEV T ESDI G
Sbjct: 260 SIVILVAGIRFYRFQEPMGSPFTRFVQVMWASVRNHLHGVLVGHQTELYEVNTNESDIKG 319

Query: 311 ARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAIS 370
           A+KLSH+ Q+ FLDKAAV+TDPE   ++RWRLCT+TQVEE KSFIRILP+WAST+ L+IS
Sbjct: 320 AQKLSHTIQYSFLDKAAVVTDPEADTRNRWRLCTVTQVEEFKSFIRILPVWASTIALSIS 379

Query: 371 FAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQT 430
           FAQLSTFF+SQA +MDR LGSNF IP G VPIFS INALILVPIYEKVIVPILRK TG +
Sbjct: 380 FAQLSTFFISQANIMDRKLGSNFIIPAGSVPIFSVINALILVPIYEKVIVPILRKRTGHS 439

Query: 431 Q--CDVKTI-----------------------------LSHLW--------HSAEVFTYV 451
           +    ++ I                             +S  W         SAEVF+YV
Sbjct: 440 RGITSLQRIGVGLFISIFAVASAALVEKKRRHSPNPSDMSVFWLFPQFFLIGSAEVFSYV 499

Query: 452 GQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSK 511
           GQLEFFY+EATDGTRSIS+A+FLSEIG+GS LS A+VKIIERATGG+E+GWLRN+LN+SK
Sbjct: 500 GQLEFFYDEATDGTRSISSAMFLSEIGIGSWLSTAIVKIIERATGGEEKGWLRNNLNLSK 559

Query: 512 LDYFYWILAGINGLNFFVYFWVAWRYKGR 540
           LDYFYW+L  IN +N  VY W+A  YKGR
Sbjct: 560 LDYFYWVLTSINAVNLAVYVWIAVLYKGR 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142577|emb|CBI19780.3| unnamed protein product [Vitis vinifera]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/574 (64%), Positives = 432/574 (75%), Gaps = 54/574 (9%)

Query: 6    EMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTA 65
            E+   EE+  +T VSNG VD RGR ADKRTTGGWKASPFII NEVAERLAFFAIAVNM +
Sbjct: 596  ELGGEEESLRTTLVSNGRVDFRGRIADKRTTGGWKASPFIIANEVAERLAFFAIAVNMVS 655

Query: 66   YLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL 125
            YLV EMHQS+P A THVTDWIGAAYVLTILGAFLADA LG               RF T+
Sbjct: 656  YLVFEMHQSIPKAATHVTDWIGAAYVLTILGAFLADACLG---------------RFGTI 700

Query: 126  VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKP 185
            V+FS IY+VGMVLLT+S S+DSL P  C ++PC   + GQ  F  CAL LIALGT  IKP
Sbjct: 701  VIFSSIYAVGMVLLTLSASIDSLHPSPCTKQPCKPASYGQTVFFSCALALIALGTGGIKP 760

Query: 186  CVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPT 245
            CVSSFGADQ+DEADE E  +KY FFNWFFFAIN+GA+FGIT+LVYIQ +K WS GFG+PT
Sbjct: 761  CVSSFGADQFDEADENEVHKKYAFFNWFFFAINIGALFGITLLVYIQVEKSWSWGFGVPT 820

Query: 246  AFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKE 305
            A   CSIII+ AG  YYRYQ+P+GS+ TRF+QVIV+ VRNH  GVEV  EDDLYEV+TKE
Sbjct: 821  ATMFCSIIILVAGMRYYRYQRPMGSAFTRFLQVIVASVRNHSRGVEVGREDDLYEVSTKE 880

Query: 306  SDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTL 365
            SDIFGA KL H++Q+ FLDKAAVITD E + K+RWRLCT+TQVEE KSF+R+LP+WAST+
Sbjct: 881  SDIFGAVKLPHTAQYSFLDKAAVITDAEAITKNRWRLCTVTQVEEFKSFLRVLPVWASTI 940

Query: 366  DLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRK 425
             L+ISFAQLSTFF+SQA +MDR LG +F IP G +P+FSAI  LILVPIYEK IVPILR+
Sbjct: 941  ALSISFAQLSTFFISQALIMDRKLGPSFVIPAGSIPVFSAITGLILVPIYEKWIVPILRR 1000

Query: 426  LTGQ-------TQCDVKTILS--------------------------------HLWHSAE 446
             TG         +  V   LS                                 L  SAE
Sbjct: 1001 YTGHRRGITSLQRMGVGLFLSIIALASAALVEKKRRDHSKPLTVSVFWLLPQYFLMGSAE 1060

Query: 447  VFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRND 506
            VFTYVGQLEFFY+EATDGTRSIS+AIFLSEIG+GS LS+A+V+IIE  TGG+E+GWLRND
Sbjct: 1061 VFTYVGQLEFFYDEATDGTRSISSAIFLSEIGIGSWLSSAIVEIIEGTTGGEEKGWLRND 1120

Query: 507  LNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
            +N S+LDYFYW LAGING+NF +Y W+A RYKG+
Sbjct: 1121 INKSRLDYFYWTLAGINGVNFLIYLWIARRYKGK 1154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492707|ref|XP_002280138.2| PREDICTED: peptide transporter PTR1-like [Vitis vinifera]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/570 (65%), Positives = 430/570 (75%), Gaps = 54/570 (9%)

Query: 10  NEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVR 69
            EE+  +T VSNG VD RGR ADKRTTGGWKASPFII NEVAERLAFFAIAVNM +YLV 
Sbjct: 13  KEESLRTTLVSNGRVDFRGRIADKRTTGGWKASPFIIANEVAERLAFFAIAVNMVSYLVF 72

Query: 70  EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFS 129
           EMHQS+P A THVTDWIGAAYVLTILGAFLADA LG               RF T+V+FS
Sbjct: 73  EMHQSIPKAATHVTDWIGAAYVLTILGAFLADACLG---------------RFGTIVIFS 117

Query: 130 CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS 189
            IY+VGMVLLT+S S+DSL P  C ++PC   + GQ  F  CAL LIALGT  IKPCVSS
Sbjct: 118 SIYAVGMVLLTLSASIDSLHPSPCTKQPCKPASYGQTVFFSCALALIALGTGGIKPCVSS 177

Query: 190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTI 249
           FGADQ+DEADE E  +KY FFNWFFFAIN+GA+FGIT+LVYIQ +K WS GFG+PTA   
Sbjct: 178 FGADQFDEADENEVHKKYAFFNWFFFAINIGALFGITLLVYIQVEKSWSWGFGVPTATMF 237

Query: 250 CSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIF 309
           CSIII+ AG  YYRYQ+P+GS+ TRF+QVIV+ VRNH  GVEV  EDDLYEV+TKESDIF
Sbjct: 238 CSIIILVAGMRYYRYQRPMGSAFTRFLQVIVASVRNHSRGVEVGREDDLYEVSTKESDIF 297

Query: 310 GARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAI 369
           GA KL H++Q+ FLDKAAVITD E + K+RWRLCT+TQVEE KSF+R+LP+WAST+ L+I
Sbjct: 298 GAVKLPHTAQYSFLDKAAVITDAEAITKNRWRLCTVTQVEEFKSFLRVLPVWASTIALSI 357

Query: 370 SFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQ 429
           SFAQLSTFF+SQA +MDR LG +F IP G +P+FSAI  LILVPIYEK IVPILR+ TG 
Sbjct: 358 SFAQLSTFFISQALIMDRKLGPSFVIPAGSIPVFSAITGLILVPIYEKWIVPILRRYTGH 417

Query: 430 -------TQCDVKTILS--------------------------------HLWHSAEVFTY 450
                   +  V   LS                                 L  SAEVFTY
Sbjct: 418 RRGITSLQRMGVGLFLSIIALASAALVEKKRRDHSKPLTVSVFWLLPQYFLMGSAEVFTY 477

Query: 451 VGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMS 510
           VGQLEFFY+EATDGTRSIS+AIFLSEIG+GS LS+A+V+IIE  TGG+E+GWLRND+N S
Sbjct: 478 VGQLEFFYDEATDGTRSISSAIFLSEIGIGSWLSSAIVEIIEGTTGGEEKGWLRNDINKS 537

Query: 511 KLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
           +LDYFYW LAGING+NF +Y W+A RYKG+
Sbjct: 538 RLDYFYWTLAGINGVNFLIYLWIARRYKGK 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458129|ref|XP_002280835.1| PREDICTED: peptide transporter PTR5-like [Vitis vinifera]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/573 (64%), Positives = 429/573 (74%), Gaps = 55/573 (9%)

Query: 8   QINEEANISTS-VSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAY 66
           Q  EE  +ST+ VSNGCVD RGR ADK+ TGGWKASPFIIVNEVAERLAFFAIAVNM  Y
Sbjct: 25  QNKEEVGVSTTLVSNGCVDIRGRIADKQRTGGWKASPFIIVNEVAERLAFFAIAVNMVQY 84

Query: 67  LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLV 126
           LV +M+QSLP A THVTDWIGAAYVLTILGAFLADAYLG               RFRT++
Sbjct: 85  LVLQMNQSLPKAATHVTDWIGAAYVLTILGAFLADAYLG---------------RFRTII 129

Query: 127 VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPC 186
           +FS +Y+VGMVLLT+S S+DSLRPP C  RPC   + GQ  FL  AL LIALGT  IKPC
Sbjct: 130 IFSSVYTVGMVLLTLSASIDSLRPPQCPTRPCEPASRGQTTFLYGALALIALGTGGIKPC 189

Query: 187 VSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTA 246
           VSSFGADQ+DEAD +E  +KY FFNWFFFAINMGA+ GIT+LVYIQ +KGW+ GFGIPTA
Sbjct: 190 VSSFGADQFDEADGEEVQKKYSFFNWFFFAINMGALLGITILVYIQVEKGWNWGFGIPTA 249

Query: 247 FTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKES 306
              CSIII+AAG PYYR+QKP+GS+ TRF+QVIV+ VRNH +GVE  H  +LYEV T ES
Sbjct: 250 AMFCSIIILAAGIPYYRFQKPMGSAFTRFLQVIVASVRNHFKGVEAGHGAELYEVKTTES 309

Query: 307 DIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLD 366
           DI G RK++H+ Q+RFLDKAAVITD E   K RWRLCT+TQVEE KSF+RILP+WAST+ 
Sbjct: 310 DILGNRKIAHTVQYRFLDKAAVITDAEANTKSRWRLCTVTQVEEFKSFVRILPVWASTIA 369

Query: 367 LAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKL 426
           L+ISFAQLSTFF+SQA +MDR LG +F IP G +P+FSA+NALILVPIYEK IVPILR+ 
Sbjct: 370 LSISFAQLSTFFISQAHIMDRKLGPDFVIPAGSIPVFSAMNALILVPIYEKWIVPILRRH 429

Query: 427 TGQTQC-------------------------------DVKTILSHLW--------HSAEV 447
           TG  +                                   + +S  W         SAEV
Sbjct: 430 TGHRRGITSLQRMGIGLFVSIFALASAALVEKRRRDHSRASTMSVFWLLPQFFLIGSAEV 489

Query: 448 FTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDL 507
           FTYVGQLEFFY+EATDGTRS+S+A+FLSEIG+GS LS A+VKIIE  TGG+E+GWLRN L
Sbjct: 490 FTYVGQLEFFYDEATDGTRSLSSAMFLSEIGIGSWLSTAIVKIIEGTTGGEEKGWLRNTL 549

Query: 508 NMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
           N S+LDYFYW+L GIN  NFF+Y W+A  YK +
Sbjct: 550 NTSRLDYFYWVLTGINVANFFIYLWIAGLYKEK 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066064|ref|XP_002302005.1| predicted protein [Populus trichocarpa] gi|222843731|gb|EEE81278.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/561 (65%), Positives = 424/561 (75%), Gaps = 54/561 (9%)

Query: 19  VSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTA 78
           VSNGCVD RGR ADKRTTGGWKA+PFIIVNEVAERLAFF IAVNM AYLV EMHQSLP A
Sbjct: 6   VSNGCVDIRGRIADKRTTGGWKAAPFIIVNEVAERLAFFGIAVNMVAYLVFEMHQSLPNA 65

Query: 79  GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVL 138
            THVTDWIGAAYVLT+ GAF ADAYLG               RFRT++VFSCIY+VGMVL
Sbjct: 66  ATHVTDWIGAAYVLTLFGAFCADAYLG---------------RFRTIIVFSCIYTVGMVL 110

Query: 139 LTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA 198
           LT+S S+DSLRPP C  R C +   GQ GFL  AL LIALGT  IKPCVSSFGADQ+DEA
Sbjct: 111 LTLSASIDSLRPPKCMVRLCPQATDGQTGFLYGALALIALGTGGIKPCVSSFGADQFDEA 170

Query: 199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG 258
           DE+E  +KY FFNWFFFAINMGAI GITVLVYI+E+KGW++GFG+PT   + S II+AAG
Sbjct: 171 DEEELPKKYAFFNWFFFAINMGAILGITVLVYIKEKKGWALGFGLPTGAMVISTIILAAG 230

Query: 259 FPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSS 318
            P+YR+Q+P+GS  TRFVQV+V+ VRNHL GV+V H+ +LYEV TKESDI G++KL H+ 
Sbjct: 231 IPFYRFQRPMGSPFTRFVQVMVASVRNHLNGVQVRHQTELYEVNTKESDIKGSQKLFHTL 290

Query: 319 QFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFF 378
           Q+ FLDKAAV+TD E    +RWRLCT+TQVEE KSFIRILP+WAST+  +ISFAQLSTFF
Sbjct: 291 QYSFLDKAAVVTDSEADTGNRWRLCTVTQVEEFKSFIRILPVWASTIAFSISFAQLSTFF 350

Query: 379 LSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ--CDVKT 436
            SQA +MDR L SNF IP   VP+FS +NALILVPIYEKVIVPILRK TG T+    ++ 
Sbjct: 351 TSQANIMDRKLSSNFKIPAASVPVFSTLNALILVPIYEKVIVPILRKRTGHTRGITSLQR 410

Query: 437 I-----------------------------LSHLW--------HSAEVFTYVGQLEFFYN 459
           I                             +S  W         SAEVFTYVGQLEFFY+
Sbjct: 411 IGVGLFISIFALIAAALVEKKRRDSPNPSGMSVFWLFPQFFLIGSAEVFTYVGQLEFFYD 470

Query: 460 EATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWIL 519
           EATDGTRSIS+A+FLSEIG+GS  S A+VKIIE ATGG+++GWLRN+LN S+LDYFYW+L
Sbjct: 471 EATDGTRSISSAVFLSEIGIGSWFSTAIVKIIESATGGEDKGWLRNNLNKSRLDYFYWVL 530

Query: 520 AGINGLNFFVYFWVAWRYKGR 540
             IN +NF VY W++  YK R
Sbjct: 531 TVINAVNFVVYLWISVVYKSR 551

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106671|dbj|BAJ53174.1| JHL18I08.8 [Jatropha curcas]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/577 (63%), Positives = 437/577 (75%), Gaps = 55/577 (9%)

Query: 4   REEMQINEEANIS-TSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVN 62
            ++ Q  +E  +S T VSNGCVD +GR ADKRTTGGWKASPFII NEVAERLAFFAIAVN
Sbjct: 24  EDQYQTRQEETLSATLVSNGCVDFQGRIADKRTTGGWKASPFIIANEVAERLAFFAIAVN 83

Query: 63  MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122
           M AYLV EMHQSLP+A THVTDW+GAAYVLTILGAFLADAYLG               RF
Sbjct: 84  MVAYLVFEMHQSLPSAATHVTDWVGAAYVLTILGAFLADAYLG---------------RF 128

Query: 123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRD 182
           +T++VFS IY VGM+LLT+S ++ +LRPP C+  PCV+    QN FL  AL LIALGT  
Sbjct: 129 KTIIVFSFIYGVGMILLTLSATVHTLRPPPCEALPCVKATDKQNTFLFFALALIALGTGG 188

Query: 183 IKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFG 242
           IKPCVSSFGADQ+DEAD++E  +K+ FFNWFFFAINMGA+ G+TVLVY++E+KGW  GFG
Sbjct: 189 IKPCVSSFGADQFDEADDEEFTKKFSFFNWFFFAINMGAMLGVTVLVYVKEKKGWGWGFG 248

Query: 243 IPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVT 302
           +PT   I SIII+ AG  YYR+QKP+GS  TRF+QVIV+ VRNHL G ++  +  LYEV 
Sbjct: 249 VPTGVMIVSIIILVAGTRYYRFQKPMGSPFTRFLQVIVASVRNHLGGFKLGSQIQLYEVN 308

Query: 303 TKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWA 362
           T+ESDI GARKL H++Q++FLDKAAVITD E   K+RW+LCT+TQVEELKS IRILP++A
Sbjct: 309 TEESDIKGARKLPHTNQYKFLDKAAVITDSELNTKNRWKLCTVTQVEELKSIIRILPVFA 368

Query: 363 STLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPI 422
           ST+ L+ISFAQL+TFF SQA +MDR L SNFTIP G V +FS INALILVP+YEK+IVP+
Sbjct: 369 STIALSISFAQLATFFTSQATIMDRKLTSNFTIPAGSVTVFSTINALILVPLYEKLIVPV 428

Query: 423 LRKLTG-----------------------------QTQCDVKTI--LSHLW--------H 443
           LRK T                              + + D  ++  +S  W         
Sbjct: 429 LRKYTSHRRGLTSLQRMGVGLFVSIFALASAALVEKRRRDSSSLSEMSVFWLFPQYFLIG 488

Query: 444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWL 503
           +AEVFTYVGQLEFFY+EATDGTRSIS+A+FL EIG+GS LS A+VKIIE+ATGG+E+GWL
Sbjct: 489 TAEVFTYVGQLEFFYDEATDGTRSISSALFLCEIGIGSWLSTAIVKIIEKATGGEEKGWL 548

Query: 504 RNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
           RN+LN SKLDYFYWILA ING+NF VY W+AWRYKGR
Sbjct: 549 RNNLNKSKLDYFYWILAAINGINFLVYLWIAWRYKGR 585

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538802|ref|XP_002510466.1| peptide transporter, putative [Ricinus communis] gi|223551167|gb|EEF52653.1| peptide transporter, putative [Ricinus communis]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/581 (62%), Positives = 431/581 (74%), Gaps = 56/581 (9%)

Query: 1   MDTREEMQINEEANISTS-VSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAI 59
           M+   E Q ++E  +ST+ VSNGCVD RGR ADKR TGGWKASPFIIVNEVAERLAFFAI
Sbjct: 1   MEKLVEDQYHKEETVSTTLVSNGCVDIRGRIADKRYTGGWKASPFIIVNEVAERLAFFAI 60

Query: 60  AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ 119
           AVNM AYL  EM QSLP A THVTDWIGAAYVLTILGAFLADAYLG              
Sbjct: 61  AVNMVAYLAGEMRQSLPNAITHVTDWIGAAYVLTILGAFLADAYLG-------------- 106

Query: 120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERP-CVEVNGGQNGFLLCALGLIAL 178
            RF+T+++FSC+Y+VGMVLLT+S S+DSLRPP CK    C +   GQN +L+CALGLIAL
Sbjct: 107 -RFKTIILFSCVYAVGMVLLTLSASIDSLRPPPCKANELCKKATDGQNAYLICALGLIAL 165

Query: 179 GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS 238
           GT  IKPCVSSFGADQ+DEADEKE  +K+ FFNWFFFAINMGA+ GIT++VYI+E+KGW 
Sbjct: 166 GTGGIKPCVSSFGADQFDEADEKEVPKKFAFFNWFFFAINMGALLGITLMVYIKEEKGWG 225

Query: 239 VGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDL 298
            GFG+PT   I SI I+AAG PYYR+QKP+GS  TRF+QV+V+ + NH  GV+V  E  L
Sbjct: 226 WGFGVPTGAMIVSIFILAAGVPYYRFQKPMGSPFTRFLQVMVASLTNHFRGVKVGSEVQL 285

Query: 299 YEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRIL 358
           YEV +++SDI GARKL H+ QF+FLDKAAV+TDPET   +RW+LCT+TQVEE K  IRIL
Sbjct: 286 YEVQSEKSDIEGARKLCHTRQFKFLDKAAVVTDPETNTMNRWKLCTVTQVEEFKCLIRIL 345

Query: 359 PIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKV 418
           P+WAST+ L+ISF QL+TFF SQA +MDR  GSNF IP G V +FSAINALILVPIYEK 
Sbjct: 346 PVWASTIALSISFTQLATFFTSQALIMDRKFGSNFVIPAGSVTVFSAINALILVPIYEKY 405

Query: 419 IVPILRKLTGQTQ-------------------------------CDVKTILSHLW----- 442
           +VPI+RK T   +                                   + +S  W     
Sbjct: 406 VVPIIRKYTNHRRGITSLQRMGVGLFVSIFALASAALVEKKRRDSSSPSDMSVFWLFPQY 465

Query: 443 ---HSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQE 499
               +AEVFTYVGQLEFFY+EATDGTRSIS+A+FL+E+G+GS LS A+VKIIER TGGQE
Sbjct: 466 FLVGTAEVFTYVGQLEFFYDEATDGTRSISSALFLTELGIGSWLSTAIVKIIERTTGGQE 525

Query: 500 EGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
            GWLR++LN S+LD+FYWIL  INGLNF VY WVA +Y GR
Sbjct: 526 TGWLRDNLNESRLDHFYWILTAINGLNFLVYLWVARQYMGR 566

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538800|ref|XP_002510465.1| peptide transporter, putative [Ricinus communis] gi|223551166|gb|EEF52652.1| peptide transporter, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/571 (51%), Positives = 378/571 (66%), Gaps = 55/571 (9%)

Query: 9   INEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLV 68
           + EE   +T VSNG  D +GR ADK TTG WKASPFII NEVAE+LA+ AI VNM  Y V
Sbjct: 1   MGEERLSTTLVSNGLRDFKGRIADKETTGRWKASPFIIANEVAEKLAYIAIVVNMVPYFV 60

Query: 69  REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF 128
            EM Q LPTA  +VT W GA YV TI GAFLADAY+G               RFRT+++F
Sbjct: 61  GEMQQPLPTAVMYVTAWNGAGYVTTIFGAFLADAYIG---------------RFRTILIF 105

Query: 129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVS 188
           SC+Y++G++LLT+S S++S RPP C   PC     GQ  F+   L L+ALGT  +KPCV 
Sbjct: 106 SCVYALGLLLLTLSASVNSPRPP-CMTEPCQRSTAGQTAFVYGGLALMALGTGGMKPCVP 164

Query: 189 SFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFT 248
           SFG DQ+DEAD  E  +K+ FF+W + +IN+G    +TVLVYIQ + GW  GFG+PTA  
Sbjct: 165 SFGTDQFDEADGNEMQEKFAFFDWLYMSINIGGFISVTVLVYIQSKWGWGWGFGVPTAAM 224

Query: 249 ICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDI 308
           I SI+++ AG PYYR+QKP+GS LTRFVQV+V+ +RNH  GV+V  E  LYEV T ESDI
Sbjct: 225 ILSIVMLLAGLPYYRFQKPMGSPLTRFVQVLVACLRNHFNGVKVGGESQLYEVQTTESDI 284

Query: 309 FGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLA 368
            GARKL  + +++FLDKAAV+TDPE   K+ WRLCT+TQVEE KS I +LP+W   + ++
Sbjct: 285 NGARKLPRTDKYKFLDKAAVVTDPEGNLKNPWRLCTVTQVEEFKSLISVLPLWVIAIAVS 344

Query: 369 ISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG 428
           IS++QL+TFF+ QA VMDR +  N  IP G  P+ +AINA I++P YEK+IVPILR  TG
Sbjct: 345 ISYSQLTTFFVGQAKVMDRKITPNIEIPPGATPVVNAINAFIIIPTYEKLIVPILRSYTG 404

Query: 429 QTQ-------------------------------CDVKTILSHLW--------HSAEVFT 449
             +                                   + +S LW         ++E F 
Sbjct: 405 HPRGITLKQRIGVGFFISILALGSAALVEKQRRDSPDPSKVSVLWLFPQFFLLGTSEFFA 464

Query: 450 YVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNM 509
           +VGQLEFF NEATDGT+SIS+A+FL + G+ + LS+ LV  I  A+GG+++GWLR DLN 
Sbjct: 465 FVGQLEFFTNEATDGTKSISSAVFLCQFGVANVLSSLLVNFITNASGGEKKGWLRADLNS 524

Query: 510 SKLDYFYWILAGINGLNFFVYFWVAWRYKGR 540
           SKLDYFYWIL  IN ++F +Y WVA  YK R
Sbjct: 525 SKLDYFYWILTTINAISFLLYLWVARYYKSR 555

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509652|ref|XP_003523560.1| PREDICTED: LOW QUALITY PROTEIN: peptide transporter PTR1-like [Glycine max]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 318/562 (56%), Positives = 379/562 (67%), Gaps = 69/562 (12%)

Query: 19  VSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTA 78
           VSN CVD  GR ADKRTTGGWKAS FIIVNEV ERLAFFAIAVNM AYLV EMHQSLP A
Sbjct: 4   VSNRCVDLHGRIADKRTTGGWKASHFIIVNEVTERLAFFAIAVNMVAYLVFEMHQSLPDA 63

Query: 79  GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVL 138
            THVTDWIGAAYVLT+LGA+                I  LQ      + F   + +GM+L
Sbjct: 64  ATHVTDWIGAAYVLTLLGAYNI-------------LIISLQ----KYIYFE--FXLGMIL 104

Query: 139 LT-VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197
           LT +S S+D+LRP  C   PC   + GQ  FL  AL  IALGT  IKPCVSSFGADQ+DE
Sbjct: 105 LTRLSASMDTLRPHKCTVPPCKGASQGQTAFLYGALTHIALGTGGIKPCVSSFGADQFDE 164

Query: 198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257
            DEK+   K+ F NWFFFAINMGAI GIT LVYIQ+  G+  GFGI  A  ICSI+I+ A
Sbjct: 165 GDEKDVQMKFSFLNWFFFAINMGAILGITPLVYIQDAAGFGWGFGIHAAAAICSIVILLA 224

Query: 258 GFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDD-LYEVTTKESDIFGARKLSH 316
           G  YYR++ P+GS  TRF+QV+V+   NHL  V +E++   LYEV T        RKL H
Sbjct: 225 GLRYYRFKMPMGSPFTRFLQVMVASTMNHLNRVHLENDQTRLYEVET-------TRKLPH 277

Query: 317 SSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLST 376
           + Q+RF D AAV+T+ E    +RWR+CT+TQVEE KSFIR+LP+WAST+ L++S+AQLST
Sbjct: 278 TPQYRFFDTAAVMTNAEXT-SNRWRICTVTQVEEFKSFIRVLPVWASTIALSVSYAQLST 336

Query: 377 FFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG-------- 428
           FFLSQA +MDR LG++F IP G VP+FSAI  LILVPIYEK IVP LR + G        
Sbjct: 337 FFLSQANIMDRTLGTHFKIPAGSVPVFSAIT-LILVPIYEKFIVPSLRNIIGHHRGVTSL 395

Query: 429 ---------------------QTQCDVKTI-LSHLW--------HSAEVFTYVGQLEFFY 458
                                + + D K++ +S  W         +AEVFTYVGQLEFFY
Sbjct: 396 QRMGVGLFVLIFAMASAALVERKRRDHKSLKMSVFWLLPQFFLMGAAEVFTYVGQLEFFY 455

Query: 459 NEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWI 518
           +EATDGTRS S  +FL EIG+GS LS ALVKIIE A+GGQ +GWLRND N S+LD FY I
Sbjct: 456 DEATDGTRSFS-XMFLCEIGIGSWLSTALVKIIEGASGGQHKGWLRNDFNNSRLDCFYXI 514

Query: 519 LAGINGLNFFVYFWVAWRYKGR 540
           L  IN +NF VY  VA+ ++G+
Sbjct: 515 LTAINDVNFLVYLVVAYCHRGK 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302781488|ref|XP_002972518.1| hypothetical protein SELMODRAFT_97812 [Selaginella moellendorffii] gi|300159985|gb|EFJ26604.1| hypothetical protein SELMODRAFT_97812 [Selaginella moellendorffii]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/574 (41%), Positives = 338/574 (58%), Gaps = 75/574 (13%)

Query: 21  NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
           +G VD +   AD+RTTGGWKA P+I+ NE  ERLA++ I++N+  +L  ++HQ   TA T
Sbjct: 10  DGTVDWKHNPADRRTTGGWKACPYILGNECCERLAYYGISMNLVVFLTDKLHQHNATAST 69

Query: 81  HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
           +VT+W G AY+  ++GAFLADAYLG               R+ T+  FS +Y VGMVLLT
Sbjct: 70  NVTNWSGTAYITPLIGAFLADAYLG---------------RYWTIAAFSSVYFVGMVLLT 114

Query: 141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200
           +S S+ SL+PP+C    C   + GQ G    AL L+ALGT  IKPCVSSFGADQ+D+ D 
Sbjct: 115 LSASVPSLKPPSCVGDVCPGASPGQIGSFYLALYLVALGTGGIKPCVSSFGADQFDDEDP 174

Query: 201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260
            E   K VFFNWF+F+IN+GA+   T LVYIQ+   W+ GFGIP A    +I+    G  
Sbjct: 175 SEKKYKTVFFNWFYFSINVGAMIASTFLVYIQQSVNWAWGFGIPAAAMGIAIVSFFTGSK 234

Query: 261 YYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQF 320
            YR+QKP GS LTR  QVIV+ +RN    +  + E  LYEV  K S I G+RK+ H++++
Sbjct: 235 KYRHQKPGGSPLTRIAQVIVAAIRNWRLRLPAD-ETMLYEVDEKASAIEGSRKIQHTAEY 293

Query: 321 RFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLS 380
            FLDKAAV  +  +     W LCT+TQVEE+K  +RI+PIWAS +  +  +AQ+ST F+ 
Sbjct: 294 SFLDKAAV--EDRSRPTTTWNLCTVTQVEEVKILLRIVPIWASAIVFSTVYAQMSTLFVV 351

Query: 381 QAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ--------- 431
           Q   MD  LG+ F +P+  + +F  ++ LI VPIY++++VP +R+ TG  Q         
Sbjct: 352 QGLKMDYILGT-FKVPSASLSMFDTLSVLIWVPIYDRLLVPFVRRYTGHPQGFTQLQRMG 410

Query: 432 -------------------------------CDVKTI-------LSHLWH--------SA 445
                                           D K         LS  W         ++
Sbjct: 411 IGLVISTLSMVVAAVLEIQRLRVAREKGLVDADDKNFPKLLNAQLSIFWQIPQYFIIGAS 470

Query: 446 EVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQ-EEGWLR 504
           EVFT++GQLEFFY ++ D  RS+ +A+ L+ + LG+ LS+ LV I+ + T    + GW+ 
Sbjct: 471 EVFTFIGQLEFFYEQSPDAMRSLGSALSLATVALGNYLSSLLVTIVTKITRRDGKPGWIA 530

Query: 505 NDLNMSKLDYFYWILAGINGLNFFVYFWVAWRYK 538
           ++LN   +DYF+W+LA ++ +NF  Y   A+R+K
Sbjct: 531 DNLNHGHIDYFFWLLAALSVVNFLFYLPFAYRFK 564

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.720	0.682	0.433	1e-109
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.755	0.691	0.423	3.6e-103
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.566	0.536	0.461	3.4e-94
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.538	0.524	0.367	7.8e-92
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.559	0.525	0.385	9.9e-92
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.729	0.682	0.377	7.2e-88
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.562	0.504	0.378	4.1e-87
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.722	0.666	0.446	7.7e-87
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.701	0.635	0.385	1.3e-86
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.718	0.662	0.369	1.5e-85

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
 Identities = 178/411 (43%), Positives = 248/411 (60%)

Query:    21 NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
             +G VD     A+K  TG WKA  FI+ NE  ERLA++ +  N+  YL   ++Q   TA  
Sbjct:    10 DGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAAN 69

Query:    81 HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
             +VT+W G  Y+  ++GAF+ADAYLG               R+ T+  F  IY  GM LLT
Sbjct:    70 NVTNWSGTCYITPLIGAFIADAYLG---------------RYWTIATFVFIYVSGMTLLT 114

Query:   141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200
             +S S+  L+P  C    C   N  Q      AL +IALGT  IKPCVSSFGADQ+DE DE
Sbjct:   115 LSASVPGLKPGNCNADTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDE 173

Query:   201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260
              E I+K  FFNWF+F+IN+GA+   TVLV+IQ   GW  GFG+PT   + ++     G  
Sbjct:   174 NEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSR 233

Query:   261 YYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEV-EHEDDLYEVTTKESDIFGARKLSHSSQ 319
             +YR Q+P GS LTR  QVIV+  R     V+V E +  L+E    ES+I G+RKL H+  
Sbjct:   234 FYRLQRPGGSPLTRIFQVIVAAFRKI--SVKVPEDKSLLFETADDESNIKGSRKLVHTDN 291

Query:   320 FRFLDKAAVITDPETVRKDR---WRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLST 376
              +F DKAAV +  ++++      WRLC++TQVEELKS I +LP+WA+ +  A  ++Q+ST
Sbjct:   292 LKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMST 351

Query:   377 FFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLT 427
              F+ Q   MD+++G NF IP+  + +F  ++ L   P+Y++ I+P+ RK T
Sbjct:   352 MFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 183/432 (42%), Positives = 258/432 (59%)

Query:     3 TREEMQINEEANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVN 62
             T+EE+  N    +S++  +G +D  G    K+ TG WKA PFI+ NE  ERLA++ IA N
Sbjct:    21 TQEEVN-NHLTGLSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKN 79

Query:    63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF 122
             +  Y   E+H+S  +A + V  W G  Y+  ++GA +AD+Y G               R+
Sbjct:    80 LITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWG---------------RY 124

Query:   123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACK---ERPCVEVNGGQNGFLLCALGLIALG 179
              T+  FS IY +GM LLT+S SL  L+P AC       C      Q       L LIALG
Sbjct:   125 WTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALG 184

Query:   180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239
             T  IKPCVSSFGADQ+D+ D +E ++K  FFNWF+F+IN+G+    T+LV++QE  GW +
Sbjct:   185 TGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGL 244

Query:   240 GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLY 299
             GF IPT F   SI     G P YR+QKP GS +TR  QV+V+  R  L+    E    LY
Sbjct:   245 GFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRK-LKLNLPEDISFLY 303

Query:   300 EVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVR---KDRWRLCTLTQVEELKSFIR 356
             E   K S I G+RK+ H+  ++FLDKAAVI++ E+      + W+LCT+TQVEE+K+ IR
Sbjct:   304 ETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIR 363

Query:   357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYE 416
             + PIWAS +  ++ ++Q+ST F+ Q   M+R + S F IP     +F  +  LI +PIY+
Sbjct:   364 MFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRS-FEIPPASFGVFDTLIVLISIPIYD 422

Query:   417 KVIVPILRKLTG 428
             + +VP +R+ TG
Sbjct:   423 RFLVPFVRRFTG 434

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 144/312 (46%), Positives = 190/312 (60%)

Query:   120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALG 179
             GR+ T+  F  IY  GM LLT+S S+  L P  C    C     GQ      AL LIALG
Sbjct:    95 GRYWTIASFVVIYIAGMTLLTISASVPGLTP-TCSGETC-HATAGQTAITFIALYLIALG 152

Query:   180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239
             T  IKPCVSSFGADQ+D+ DEKE   K  FFNWF+F IN+GA+   +VLV+IQ   GW  
Sbjct:   153 TGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGW 212

Query:   240 GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLY 299
             G G+PT     +++   AG  +YR QKP GS LTR +QVIV+  R     +  E E  LY
Sbjct:   213 GLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIP-EDESLLY 271

Query:   300 EVTTKESDIFGARKLSHSSQFRFLDKAAVITDPET---VRKDRWRLCTLTQVEELKSFIR 356
             E    ES I G+RKL H+    F DKAAV T+ +     +   W+LCT+TQVEELK+ IR
Sbjct:   272 ENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIR 331

Query:   357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYE 416
             +LPIWA+ +  A  ++Q+ T F+ Q   +D+++G NF IP+  + +F  ++ L   P+Y+
Sbjct:   332 LLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYD 391

Query:   417 KVIVPILRKLTG 428
             K+IVP  RK TG
Sbjct:   392 KLIVPFARKYTG 403

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 7.8e-92, Sum P(3) = 7.8e-92
 Identities = 116/316 (36%), Positives = 190/316 (60%)

Query:   120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALG 179
             GRF+T+++ S IY +G+V+L +S ++ + R    +E+           F + AL ++A+G
Sbjct:    82 GRFKTVLLTSFIYLLGIVMLPLSVTVVARR---MREKV----------FFM-ALYVMAVG 127

Query:   180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239
                 KPCV +F ADQ+ EA+ +E   K  FFN+++ AI + +   +  L++IQE+  WS+
Sbjct:   128 EGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSL 187

Query:   240 GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRN-------HLEGVEV 292
             GF I     + +I+I   G P YR Q P+GS  TR  QV+V+ ++        H  G+  
Sbjct:   188 GFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSSTRHHYGLCY 247

Query:   293 EHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPE-TVRKDRWRLCTLTQVEEL 351
             E ED+    +T  + ++    L+ ++QFRFLDKA +I + +    ++ WRLCT+ QVEE+
Sbjct:   248 EEEDEHKLESTNSNQVY---LLARTNQFRFLDKATIIDEIDHNKNRNPWRLCTVNQVEEV 304

Query:   352 KSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALIL 411
             K  +R++PIW S +    +  QL+TFFL Q ++MDR +G++FTIP         +  LIL
Sbjct:   305 KLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILIL 364

Query:   412 VPIYEKVIVPILRKLT 427
             +P+Y++V VP++RK+T
Sbjct:   365 IPLYDRVFVPMVRKIT 380

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
 Identities = 120/311 (38%), Positives = 178/311 (57%)

Query:   120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALG 179
             GR+ T++V + IY +G+VLLT+S  +  L+P  C +  CVE           A+ LI++G
Sbjct:   108 GRYATVLVATTIYLMGLVLLTMSWFIPGLKP--CHQEVCVEPRKAHEVAFFIAIYLISIG 165

Query:   180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239
             T   KP + SFGADQ+D+   +E   K  FFNW+  ++  G +  +T + YI+++ GW V
Sbjct:   166 TGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGV 225

Query:   240 GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLY 299
                I T     S+II   G P+YRY+ P GS LT  +QV V+ +      +    +  L 
Sbjct:   226 AGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVAAIAKR--NLPYPSDPSLL 283

Query:   300 EVTTKESDIFGARKLSHSSQFRFLDKAAVITD--PETVRKDR-WRLCTLTQVEELKSFIR 356
                +K ++    R L H+   +FLDKAA+I D  P  + K   WRL TLT+VEE K  I 
Sbjct:   284 HEVSK-TEFTSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEETKLIIN 342

Query:   357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYE 416
             ++PIW STL   I   Q STFF+ QA  MDR++G  FT+P   +   +A+  +I + +YE
Sbjct:   343 VIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLTALTLIISLTVYE 401

Query:   417 KVIVPILRKLT 427
             K++VP+LR +T
Sbjct:   402 KLLVPLLRSIT 412

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 161/426 (37%), Positives = 242/426 (56%)

Query:    12 EANISTSVSNGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREM 71
             E+  S +V++  VD +GR ADK  TGGW  +  I+  EV ERL+   IAVN+  YL+  M
Sbjct:     2 ESKGSWTVADA-VDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETM 60

Query:    72 HQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCI 131
             H    T+   VTD++G +++L +LG FLAD++LG               RF+T+ +FS I
Sbjct:    61 HLPSSTSANIVTDFMGTSFLLCLLGGFLADSFLG---------------RFKTIGIFSTI 105

Query:   132 YSVGMVLLTVSGSLDSLRPPACKE-RPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF 190
              ++G   L V+  L  LRPP C     C+     Q   L  +L LIALGT  +K  +S F
Sbjct:   106 QALGTGALAVATKLPELRPPTCHHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGF 165

Query:   191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC 250
             G+DQ+D+ D KE      FFN FFF I+MG +  +TVLVY+Q++ G S  +GI T     
Sbjct:   166 GSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAI 225

Query:   251 SIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFG 310
             +I+I   G   YRY+K  GS + +  QVI +  R      ++E    +  V   E +  G
Sbjct:   226 AIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAAFRKR----KMELPQSI--VYLYEDNPEG 279

Query:   311 ARKLSHSSQFRFLDKAAVITD---PETVR----KDRWRLCTLTQVEELKSFIRILPIWAS 363
              R + H+ QF  LDKAA++ +    +T+      + W+L ++T+VEE+K  +R+LPIWA+
Sbjct:   280 IR-IEHTDQFHLLDKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWAT 338

Query:   364 TLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPIL 423
             T+    ++AQ+ TF + QA+ M RN+GS F IP G + +F     LI + +Y++ I+P  
Sbjct:   339 TIIFWTTYAQMITFSVEQASTMRRNIGS-FKIPAGSLTVFFVAAILITLAVYDRAIMPFW 397

Query:   424 RKLTGQ 429
             +K  G+
Sbjct:   398 KKWKGK 403

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 4.1e-87, Sum P(3) = 4.1e-87
 Identities = 119/314 (37%), Positives = 179/314 (57%)

Query:   120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALG 179
             GR+ T+++ + IY +G++LLT+S  +  L+  AC E  CVE           A+ LI++G
Sbjct:   107 GRYGTVLLATTIYLMGLILLTLSWFIPGLK--ACHEDMCVEPRKAHEIAFFIAIYLISIG 164

Query:   180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV 239
             T   KP + SFGADQ+++   +E   K  +FNW+   +  G +  +TV+VYI+++ GW V
Sbjct:   165 TGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGV 224

Query:   240 GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLY 299
                I T     S  I   G P+YRY+ P GS LT  +QV V+ +      +    +  L 
Sbjct:   225 ASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKR--NLPCPSDSSLL 282

Query:   300 EVTTKESDIFGARKLSHSSQFRFLDKAAVITDP-ETVRKDR---WRLCTLTQVEELKSFI 355
                T E    G R LS S   +FLDKAAVI D  E  + ++   WRL T+T+VEE+K  I
Sbjct:   283 HELTNEEYTKG-RLLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLI 341

Query:   356 RILPIWASTLDLAISFAQLSTFFLSQAAVMDRNL-GSNFTIPTGCVPIFSAINALILVPI 414
              ++PIW  TL   +   Q ST F+ QA +MDR++ G++F +P   +    A++ +I V I
Sbjct:   342 NMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTI 401

Query:   415 YEKVIVPILRKLTG 428
             YEK++VP+LR+ TG
Sbjct:   402 YEKLLVPLLRRATG 415

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 184/412 (44%), Positives = 249/412 (60%)

Query:    21 NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
             +G VD  G    K  TG WKA PFI+ NE  ERLA++ IA N+  YL  ++HQ   +A T
Sbjct:    27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query:    81 HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
             +VT W G  Y+  ++GA LADAY G               R+ T+  FS IY +GM  LT
Sbjct:    87 NVTTWQGTCYLTPLIGAVLADAYWG---------------RYWTIACFSGIYFIGMSALT 131

Query:   141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE 200
             +S S+ +L+P  C    C      Q       L LIALGT  IKPCVSSFGADQ+D+ D 
Sbjct:   132 LSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDS 191

Query:   201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP 260
             +E ++K  FFNWF+F+IN+GA+   ++LV+IQE +GW +GFGIPT F   +I     G P
Sbjct:   192 RERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTP 251

Query:   261 YYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDL-YEVTTKESDIFGARKLSHSSQ 319
              YR+QKP GS +TR  QV+V+  R     V+V  +  L YE   K S I G+RK+ H+  
Sbjct:   252 LYRFQKPGGSPITRISQVVVASFRK--SSVKVPEDATLLYETQDKNSAIAGSRKIEHTDD 309

Query:   320 FRFLDKAAVITDPETVRKD---RWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLST 376
              ++LDKAAVI++ E+   D    WRLCT+TQVEELK  IR+ PIWAS +  +  +AQ+ST
Sbjct:   310 CQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMST 369

Query:   377 FFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG 428
              F+ Q   M+  +GS F +P   +  F   + +I VP+Y++ IVP+ RK TG
Sbjct:   370 MFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTG 420

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
 Identities = 154/400 (38%), Positives = 225/400 (56%)

Query:    34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLT 93
             R  GG    PFI  NE+ E+LA      NM +YL  ++H  L  A   +T++ G + +  
Sbjct:    22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81

Query:    94 ILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPAC 153
             +LGAF+AD++ G               RF T+   S IY +GM LLT+S  + +LRPP C
Sbjct:    82 LLGAFIADSFAG---------------RFWTITFASIIYQIGMTLLTISAIIPTLRPPPC 126

Query:   154 K-ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW 212
             K E  CV  +  Q   L  AL L ALG+  I+PCV +FGADQ+DE+D  +  + + +FNW
Sbjct:   127 KGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186

Query:   213 FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSL 272
             ++F +    +  +TVLV+IQ+  GW +G GIPT     S+I    GF  YR+  P GS  
Sbjct:   187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246

Query:   273 TRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDP 332
             TR +QV V+  R     + V     LY     ++ I    KL+H+    FLDKAA++T+ 
Sbjct:   247 TRLIQVGVAAFRKRKLRM-VSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305

Query:   333 ETVRK----DRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRN 388
             + ++     + WRL T+ +VEELKS IR+ PI AS + L  ++AQ  TF L QA  M+R+
Sbjct:   306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365

Query:   389 LGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG 428
             L ++F IP G + +F+ +  L  +  Y++V V + RK TG
Sbjct:   366 LTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTG 405

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
 Identities = 152/411 (36%), Positives = 235/411 (57%)

Query:    21 NGCVDDRGRTADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT 80
             +G VD RG    +  TG WKA  F++V EV ER+A++ I+ N+  Y+  ++HQ    +  
Sbjct:    13 DGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSN 72

Query:    81 HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT 140
             +VT+W+G +++  ILGA++ADA+ G               R+ T V+ S IY +GM LLT
Sbjct:    73 NVTNWVGTSWLTPILGAYVADAHFG---------------RYITFVISSAIYLLGMALLT 117

Query:   141 VSGSLDSLRPPACKE---RPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE 197
             +S SL  L+PP C       C + +  Q      AL  +A+GT   KP +S+ GADQ+DE
Sbjct:   118 LSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDE 177

Query:   198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA 257
              D K+ I K+ FFNW+ F+I  G  F  TVLVY+Q+  GW++G+G+ T     SI I   
Sbjct:   178 FDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLL 237

Query:   258 GFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHS 317
             G   YR++ P+GS  T+  +VIV+ +R   E +  +     YE+   E     A  +  +
Sbjct:   238 GTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSD-STRFYELPPMEYASKRAFPIHST 296

Query:   318 SQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTF 377
             S  RFL++A++    +T    +WRLCT+T+VEE K  +++LP+   T   ++  AQ+ T 
Sbjct:   297 SSLRFLNRASL----KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTL 352

Query:   378 FLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG 428
             F+ Q   +DR L +NF+IP   +  F+  + L+ + IY++V V  +RKLTG
Sbjct:   353 FIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTG 403

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M390	PTR1_ARATH	No assigned EC number	0.4006	0.9425	0.8929	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051407 hypothetical protein (619 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
pfam00854	372	pfam00854, PTR2, POT family	8e-58
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-21
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	8e-18
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-06
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	5e-04
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	0.002
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  196 bits (501), Expect = 8e-58
 Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 30/306 (9%)

Query: 122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR 181
           F+T+++ S IY++G VLLT+     SL P              Q       L LIALGT 
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-------------QVALFYIGLYLIALGTG 47

Query: 182 DIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF 241
            IKP VS+FGADQ+DE  +    ++  FF+WF+F+IN G++    +  Y+Q+  G+ +GF
Sbjct: 48  GIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGF 104

Query: 242 GIPTAFTICSIIIVAAGFPYYR-YQKPIGSSLTRFVQVIVS--YVRNHLEGVEVEHEDDL 298
           G+P    + ++++   G   Y+    P GS  T  +  I++       L+  +  H   L
Sbjct: 105 GLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW--L 162

Query: 299 YEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRIL 358
           Y    K +    ++   H+       + AVI  P       +       V  L++ + +L
Sbjct: 163 YWALEKYNKRSISQTKVHT-------RVAVIFIPLPKFWALF--DQQGSVWLLQAILLML 213

Query: 359 PIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKV 418
           PIWA  +     + QL+T  + Q   MDR +   F IP      F+ +  LIL+PI + +
Sbjct: 214 PIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFL 273

Query: 419 IVPILR 424
           + P+LR
Sbjct: 274 VYPLLR 279

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 87/377 (23%), Positives = 154/377 (40%), Gaps = 93/377 (24%)

Query: 66  YLVREMH--QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR 123
           YL+  +   +   T   H   ++   Y+  ++GA +AD++LG               +F+
Sbjct: 13  YLLNFLGWNEDTATNIYHTFTYL--CYLTPLIGALIADSWLG---------------KFK 55

Query: 124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDI 183
           T++  S +Y VG  L ++        P        + + G         L LIALGT  I
Sbjct: 56  TILYLSLVYVVGHALASLGAVPSLGHPL----HDALSLVG---------LALIALGTGGI 102

Query: 184 KPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV-------LVYIQEQKG 236
           KPCVS+FG DQ++E        ++ FF++F+FAIN G++F   +       +     Q  
Sbjct: 103 KPCVSAFGGDQFEERQLS---LRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDC 159

Query: 237 WSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHED 296
           + + FG+P      ++I+ + G   Y+ + P+G+ +++ ++ IV  ++            
Sbjct: 160 FPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR---------- 209

Query: 297 DLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIR 356
                       F  R      +  +LD AA    P+ + +          +   K  +R
Sbjct: 210 ------------FRTRS-EDWPRLHWLDWAA----PKYLIRM---------IRSTKRLLR 243

Query: 357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPI----FSAINA---L 409
           +L ++   + L + +A              R  G       G  PI      A+N    L
Sbjct: 244 VLFLF---IPLPMFWALFDQQGSRWTLQATRMDGD-----VGLFPIQPDQMQAVNPLLVL 295

Query: 410 ILVPIYEKVIVPILRKL 426
           ILVPI++ V+ P L K 
Sbjct: 296 ILVPIFDYVVYPALAKC 312

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 85.8 bits (213), Expect = 8e-18
 Identities = 68/390 (17%), Positives = 129/390 (33%), Gaps = 70/390 (17%)

Query: 45  IIVNEVAERLAFFAIAVNMTAYLVREMHQSLP----TAGTHVTDWIGAAYVLTILGAFLA 100
           I   E+ ER +++ +   +  YL  ++   L      A    + +    Y+  I+G +LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 101 DAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVE 160
           D  LG                 RT+V+ + + ++G ++L +S                  
Sbjct: 86  DRVLG---------------TRRTIVLGAILMAIGHLVLAISSV---------------- 114

Query: 161 VNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG 220
              G  G  +  L LI +GT   KP +SS   + Y + D     ++   F  F+  IN+G
Sbjct: 115 --SGPGGLYI-GLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIG 167

Query: 221 AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIV 280
           ++    +   +    GW VGFG+     I  ++I   G  +    K IG           
Sbjct: 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV---KGIGGVPDPNPLSFN 224

Query: 281 SYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPE--TVRKD 338
             +      V +     L  +  +               F  +     I           
Sbjct: 225 FLLPVLGGLVVMILAALLTLLLNQN-------------TFSGVLLVISILIAIIYFAEAF 271

Query: 339 RWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTG 398
           R         +E +  +  +P++   +     + Q+ +     A          F +P  
Sbjct: 272 RSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA 327

Query: 399 CVPIFSAINA---LILVPIYEKVIVPILRK 425
               F ++N    ++  PI   +   + R 
Sbjct: 328 ---WFQSLNPFFIILFSPILAALWTKLGRG 354

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 41/197 (20%)

Query: 49  EVAERLAFFAIAVNMTAYLVREMHQSL--PTAGTHVTDWIGAAYVLTILGAFLADAYLGQ 106
           E+ ER +++ +   +  YLV++         A      +    Y+LT +G +  D   G 
Sbjct: 19  ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78

Query: 107 PALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQN 166
                           +T+V+   +  +G  +L +S   D +                  
Sbjct: 79  K---------------KTMVLGGIVLMLGHFMLAMSIYPDLI------------------ 105

Query: 167 GFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGIT 226
                 LG IA+G+   K   SS     Y+  D     ++   F  F+ +IN+G+     
Sbjct: 106 ---FYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPL 159

Query: 227 VLVYIQEQKGWSVGFGI 243
           +   I E  G+ VGF +
Sbjct: 160 LAGVIAENYGYHVGFNL 176

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 39/204 (19%)

Query: 40  KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFL 99
           KA   I   E+ ER  ++ +   M  YLV+++  S   + T  + +    Y L  +G +L
Sbjct: 21  KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80

Query: 100 ADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCV 159
            D  LG                 R +++ + + ++G  L+  SG                
Sbjct: 81  GDKVLGTK---------------RVIMLGAIVLAIGYALVAWSGH--------------- 110

Query: 160 EVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM 219
                  G +   +  IA+G    K   SS  +  Y++ D +        F  ++ +IN+
Sbjct: 111 -----DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA----FTMYYMSINI 161

Query: 220 GAIFGITVLVYIQEQKGWSVGFGI 243
           G+ F +    ++  + GWSV F +
Sbjct: 162 GSFFSMLATPWLAAKYGWSVAFAL 185

Length = 500

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 41/237 (17%)

Query: 33  KRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVL 92
            +     +A  +++  ++ E  +F+ +   +  YL  ++      A    + +    YV 
Sbjct: 2   NKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVT 61

Query: 93  TILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC-IYSVGMVLLTVSGSLDSLRPP 151
            ILG FLAD  LG                 R  V+    + ++G V+L  S     + P 
Sbjct: 62  PILGGFLADKVLGN----------------RMAVMLGALLMAIGHVVLGAS----EIHPS 101

Query: 152 ACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN 211
                           FL  +L +I  G    K  VS    + Y+  D +    +   F+
Sbjct: 102 ----------------FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFS 141

Query: 212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPI 268
             + A N+G+I       Y QE+  W++GFG+     I  ++I   G  ++ + + +
Sbjct: 142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGV 198

Length = 493

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 49/234 (20%)

Query: 50  VAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPAL 109
               L    ++  +      ++  S   AG  V+ +     + ++L  +L+D +      
Sbjct: 9   FLSGLDRGLLSPALPLL-AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF------ 61

Query: 110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFL 169
                     GR R L++   ++++G +LL  + SL                       L
Sbjct: 62  ----------GRRRVLLLGLLLFALGSLLLAFASSL---------------------WLL 90

Query: 170 LCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV 229
           L    L+ LG   + P  ++  A+ +         ++      F     +GA+ G  +  
Sbjct: 91  LVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGG 144

Query: 230 YIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYV 283
            + E  GW   F I     +   +++            +  +L  F+     Y 
Sbjct: 145 LLAESLGWRWLFLILAILGLLLALLLLFLLR-----LLLLLALAFFLLSFGYYG 193

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.96
PRK10054	395	putative transporter; Provisional	99.85
PRK03545	390	putative arabinose transporter; Provisional	99.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.85
PRK05122	399	major facilitator superfamily transporter; Provisi	99.83
PRK12382	392	putative transporter; Provisional	99.83
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.83
TIGR00893	399	2A0114 d-galactonate transporter.	99.83
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
TIGR00900	365	2A0121 H+ Antiporter protein.	99.8
PRK10504	471	putative transporter; Provisional	99.8
PRK11663	434	regulatory protein UhpC; Provisional	99.8
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.79
TIGR00891	405	2A0112 putative sialic acid transporter.	99.79
PRK10489	417	enterobactin exporter EntS; Provisional	99.79
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.79
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.78
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.78
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.78
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.78
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.78
PRK15011	393	sugar efflux transporter B; Provisional	99.78
TIGR00895	398	2A0115 benzoate transport.	99.77
PRK03633	381	putative MFS family transporter protein; Provision	99.77
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.77
PRK10091	382	MFS transport protein AraJ; Provisional	99.77
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.77
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.77
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.76
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.76
PRK09528	420	lacY galactoside permease; Reviewed	99.76
PRK12307	426	putative sialic acid transporter; Provisional	99.76
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.76
PRK09705	393	cynX putative cyanate transporter; Provisional	99.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.76
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.75
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.75
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.75
PRK03699	394	putative transporter; Provisional	99.74
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.74
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.74
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.74
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.74
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.73
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.73
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.73
PLN00028	476	nitrate transmembrane transporter; Provisional	99.73
PRK03893	496	putative sialic acid transporter; Provisional	99.72
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.72
PRK09952	438	shikimate transporter; Provisional	99.72
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.71
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.7
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.7
PRK11043	401	putative transporter; Provisional	99.7
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.69
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.69
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.69
TIGR00898	505	2A0119 cation transport protein.	99.68
PRK15075	434	citrate-proton symporter; Provisional	99.68
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.67
PRK11010	491	ampG muropeptide transporter; Validated	99.67
PRK10642	490	proline/glycine betaine transporter; Provisional	99.67
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.66
PRK10133	438	L-fucose transporter; Provisional	99.65
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.65
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.64
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.63
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.62
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.62
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.6
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.57
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.56
PRK11902	402	ampG muropeptide transporter; Reviewed	99.55
TIGR00901	356	2A0125 AmpG-related permease.	99.55
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.55
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.55
PRK09952	438	shikimate transporter; Provisional	99.5
TIGR00805	633	oat sodium-independent organic anion transporter.	99.5
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.49
PRK09669	444	putative symporter YagG; Provisional	99.49
KOG2615	451	consensus Permease of the major facilitator superf	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.47
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.46
PRK10642	490	proline/glycine betaine transporter; Provisional	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
PRK09848	448	glucuronide transporter; Provisional	99.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.43
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PRK10429	473	melibiose:sodium symporter; Provisional	99.41
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.4
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.39
PRK03699	394	putative transporter; Provisional	99.39
PRK09705	393	cynX putative cyanate transporter; Provisional	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.38
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.38
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PF13347	428	MFS_2: MFS/sugar transport protein	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.37
TIGR00893	399	2A0114 d-galactonate transporter.	99.37
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.35
KOG0569	485	consensus Permease of the major facilitator superf	99.34
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.34
KOG0254	513	consensus Predicted transporter (major facilitator	99.34
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.31
PRK09528	420	lacY galactoside permease; Reviewed	99.3
TIGR00891	405	2A0112 putative sialic acid transporter.	99.3
PRK11462	460	putative transporter; Provisional	99.3
PRK09874	408	drug efflux system protein MdtG; Provisional	99.29
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.29
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.29
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.29
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.28
PRK12382	392	putative transporter; Provisional	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
KOG2533	495	consensus Permease of the major facilitator superf	99.27
PRK03545	390	putative arabinose transporter; Provisional	99.27
PRK10489	417	enterobactin exporter EntS; Provisional	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.26
PRK03633	381	putative MFS family transporter protein; Provision	99.26
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.26
KOG2532	466	consensus Permease of the major facilitator superf	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.24
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.24
PRK11010	491	ampG muropeptide transporter; Validated	99.24
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.23
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.16
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.14
PTZ00207	591	hypothetical protein; Provisional	99.14
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.13
PRK12307	426	putative sialic acid transporter; Provisional	99.1
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
PLN00028	476	nitrate transmembrane transporter; Provisional	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.1
TIGR00900	365	2A0121 H+ Antiporter protein.	99.08
PRK10504	471	putative transporter; Provisional	99.07
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.07
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.07
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.06
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.06
TIGR00895	398	2A0115 benzoate transport.	99.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.03
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.01
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.0
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.99
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.99
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.99
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
PRK11902	402	ampG muropeptide transporter; Reviewed	98.95
PRK10133	438	L-fucose transporter; Provisional	98.95
PF13347	428	MFS_2: MFS/sugar transport protein	98.95
COG2211	467	MelB Na+/melibiose symporter and related transport	98.94
PRK10054	395	putative transporter; Provisional	98.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.91
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.89
PRK09848	448	glucuronide transporter; Provisional	98.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.81
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.78
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.76
KOG0569	485	consensus Permease of the major facilitator superf	98.74
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.74
PRK11043	401	putative transporter; Provisional	98.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.71
PRK10429	473	melibiose:sodium symporter; Provisional	98.71
TIGR00898	505	2A0119 cation transport protein.	98.71
PRK09669	444	putative symporter YagG; Provisional	98.7
TIGR00901	356	2A0125 AmpG-related permease.	98.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.68
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.64
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.63
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.62
KOG2563	480	consensus Permease of the major facilitator superf	98.58
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.55
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.55
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.47
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.46
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.42
COG2211	467	MelB Na+/melibiose symporter and related transport	98.39
PRK11462	460	putative transporter; Provisional	98.32
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.28
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.27
KOG3626	735	consensus Organic anion transporter [Secondary met	98.27
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.24
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.23
KOG2533	495	consensus Permease of the major facilitator superf	98.23
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.22
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.22
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.16
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.05
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.01
COG0477	338	ProP Permeases of the major facilitator superfamil	97.99
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.92
PF12832	77	MFS_1_like: MFS_1 like family	97.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.82
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.65
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.64
TIGR00805	633	oat sodium-independent organic anion transporter.	97.59
KOG3762	618	consensus Predicted transporter [General function	97.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.56
KOG0254	513	consensus Predicted transporter (major facilitator	97.51
PTZ00207	591	hypothetical protein; Provisional	97.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.43
KOG3762	618	consensus Predicted transporter [General function	97.23
KOG2563	480	consensus Permease of the major facilitator superf	97.03
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.99
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.88
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.81
KOG2615	451	consensus Permease of the major facilitator superf	96.74
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.71
KOG0637	498	consensus Sucrose transporter and related proteins	96.71
KOG3626	735	consensus Organic anion transporter [Secondary met	96.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.57
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.54
PRK03612	521	spermidine synthase; Provisional	96.51
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.16
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.14
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.01
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.87
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.82
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.79
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.77
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.68
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.67
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	89.63
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.36
KOG3098	461	consensus Uncharacterized conserved protein [Funct	88.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	86.42
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.98
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.33
KOG3097	390	consensus Predicted membrane protein [Function unk	80.84

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-64  Score=546.14  Aligned_cols=495  Identities=44%  Similarity=0.773  Sum_probs=445.5

Q ss_pred             cccCCCCCcccc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 041588           23 CVDDRGRTADKR---TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFL   99 (540)
Q Consensus        23 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~l   99 (540)
                      ..+.++.+..+.   .++.|+++..++..+.+|+.++|++..++..|+++++|.+...+.-.++.|.+...+.+++||++
T Consensus        17 ~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~l   96 (571)
T KOG1237|consen   17 SVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFL   96 (571)
T ss_pred             eeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444444443   77889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC----CCCCCccCCCchhHHHHHHHHH
Q 041588          100 ADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPAC----KERPCVEVNGGQNGFLLCALGL  175 (540)
Q Consensus       100 aD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l  175 (540)
                      ||.++|               |++++.++.++..+|+.++++++..+.++|+.|    ....|+.++..+...++.++.+
T Consensus        97 aD~f~g---------------ry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l  161 (571)
T KOG1237|consen   97 ADSFLG---------------RYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL  161 (571)
T ss_pred             HHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence            999999               999999999999999999999999999999997    2245888888899999999999


Q ss_pred             HHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          176 IALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       176 ~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                      +++|.|+.+|+..++++|||++.++.++..+.++|+|+|+..++|..++-++..|++++.||.++|.++++++++++++|
T Consensus       162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            99999999999999999999988887777788999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccc-
Q 041588          256 AAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPET-  334 (540)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~-  334 (540)
                      +.+.+.|++.+|.++|+.++.+|++++.+|++...+ .+++.+      +......+...+++.++++|+|+.+...+. 
T Consensus       242 ~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~-~~~~~~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~  314 (571)
T KOG1237|consen  242 LPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS-LDPEEL------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLK  314 (571)
T ss_pred             HcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC-Ccchhc------cccccccccccCCcccchhhHhhccCCcccc
Confidence            999999999999999999999999999999987776 332222      011112223445778899999998876532 


Q ss_pred             --ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHH
Q 041588          335 --VRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILV  412 (540)
Q Consensus       335 --~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~  412 (540)
                        ...++|++|+.++|||+|.++|++|+|+..+++++++.|+.++++.|+.+||+++++++++|+++++.+..+.++++.
T Consensus       315 ~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~i  394 (571)
T KOG1237|consen  315 DGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFI  394 (571)
T ss_pred             cccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhh
Confidence              346789999999999999999999999999999999999999999999999999985599999999999999999999


Q ss_pred             HhhhhhHHhHhhhhcCCCC----c--------------------ccc------c-----c-hhHHHH--------HHHHH
Q 041588          413 PIYEKVIVPILRKLTGQTQ----C--------------------DVK------T-----I-LSHLWH--------SAEVF  448 (540)
Q Consensus       413 p~~~~~~~p~~~r~~~~~~----l--------------------~~~------~-----~-~s~~~~--------~~e~~  448 (540)
                      |++||+++|+.||.++++.    +                    |.+      .     + +|++|+        ++|+|
T Consensus       395 plydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf  474 (571)
T KOG1237|consen  395 PLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVF  474 (571)
T ss_pred             hhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHH
Confidence            9999999999999988763    1                    211      2     5 999999        99999


Q ss_pred             HhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccC-cCCCCchhHHHHHHHHHHHHHHH
Q 041588          449 TYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLR-NDLNMSKLDYFYWILAGINGLNF  527 (540)
Q Consensus       449 ~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~-~~~n~~~~~~~f~~la~l~~~~~  527 (540)
                      .+++++||+|+|+|++||+.++|+++++.++|++++.+++.++...++. ..+|++ +|+|++|+|+|||+++.++.++.
T Consensus       475 ~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~-~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~  553 (571)
T KOG1237|consen  475 TSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK-AAEWLGFANLNKGRLDYFYWLLAVYSAVNF  553 (571)
T ss_pred             HhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccCChhHhhhhHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999987732 347999 99999999999999999999999


Q ss_pred             HHHHHHhhcccCC
Q 041588          528 FVYFWVAWRYKGR  540 (540)
Q Consensus       528 ~~y~~~~~~~~~~  540 (540)
                      ..|.+++++|+||
T Consensus       554 ~~~~~~~~~y~~~  566 (571)
T KOG1237|consen  554 LYFLICAKRYDYK  566 (571)
T ss_pred             hheEEEEEeeeec
Confidence            9999999999885

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-46  Score=387.79  Aligned_cols=428  Identities=19%  Similarity=0.269  Sum_probs=329.5

Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 041588           34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH----QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPAL  109 (540)
Q Consensus        34 ~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg----~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~  109 (540)
                      ...++||.++.++.+|++||++|||+.+.+..|++.+++    +|+++|..+.+.|....|+++++|||+|||++|    
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG----   90 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG----   90 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            455688999999999999999999999999999998888    999999999999999999999999999999999    


Q ss_pred             hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588          110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS  189 (540)
Q Consensus       110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~  189 (540)
                                 +||+++.|.+++++|.+.++.++                   ......++++++++++|.|+++|+.++
T Consensus        91 -----------~~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~  140 (498)
T COG3104          91 -----------TRRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISS  140 (498)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHH
Confidence                       99999999999999999999873                   013567999999999999999999999


Q ss_pred             hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccC--C
Q 041588          190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQK--P  267 (540)
Q Consensus       190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~--~  267 (540)
                      +++|++|++|++    |..+|+++|+++|+|++++|.+.+++.+++||+.+|..+++.+.++++.++++++++....  |
T Consensus       141 llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~  216 (498)
T COG3104         141 LLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP  216 (498)
T ss_pred             HHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence            999999999986    8999999999999999999999999999999999999999999999999999998776543  2


Q ss_pred             CCChHH------HHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccc
Q 041588          268 IGSSLT------RFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWR  341 (540)
Q Consensus       268 ~~~~l~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~  341 (540)
                      ...++.      ....++...+.......  .+.+.+.....          .     ....  ....+-.   ...+| 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~----------~-----~~i~--~~~~~~~---~~~~~-  273 (498)
T COG3104         217 DPNPLSFNFLLPVLGGLVVMILAALLTLL--LNQNTFSGVLL----------V-----ISIL--IAIIYFA---EAFRS-  273 (498)
T ss_pred             CccchhhhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHH----------H-----HHHH--HHHHHHH---HHhcc-
Confidence            222211      11111111111000000  00000000000          0     0000  0000000   00111 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHH
Q 041588          342 LCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIV  420 (540)
Q Consensus       342 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~  420 (540)
                        .+.+ +|+|++++++++++..++||++|.|++|.+..|+. +.|++.. |+++|++++|++|+++++++.|+.+++++
T Consensus       274 --~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~  349 (498)
T COG3104         274 --PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWT  349 (498)
T ss_pred             --CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHh
Confidence              1233 89999999999999999999999999999998885 4467744 69999999999999999999999999999


Q ss_pred             hHhhhhcCCCCccc---------------------c----cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccc
Q 041588          421 PILRKLTGQTQCDV---------------------K----TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTR  466 (540)
Q Consensus       421 p~~~r~~~~~~l~~---------------------~----~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r  466 (540)
                      |+.++. +.++...                     .    .. .|++|+        +||++.+|.++|.+++.+|++++
T Consensus       350 ~l~~~~-~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~  428 (498)
T COG3104         350 KLGRGN-KQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK  428 (498)
T ss_pred             HhhcCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence            988775 4444211                     1    22 788888        99999999999999999999999


Q ss_pred             hhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041588          467 SISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWR  536 (540)
Q Consensus       467 ~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~  536 (540)
                      |..||.|+++.+.|+.++..+.+.... +.        +..+......+|+.++.+.++..+......++
T Consensus       429 s~~ma~wfLt~a~~~~l~g~va~~~~~-~~--------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~  489 (498)
T COG3104         429 SFIMAMWFLTVAAGQTLGGQVAGLTAV-TD--------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK  489 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhceecccccc-cc--------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999888773210 10        00122334467888888877766655555444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=8.2e-39  Score=340.77  Aligned_cols=428  Identities=17%  Similarity=0.177  Sum_probs=310.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      |||.++.++..+++|++++|++..+++.|+++++|++..+++.+.+.+....+++++++|+++||++|            
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilG------------   74 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG------------   74 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------
Confidence            67899999999999999999999999999999999999999999999999999999999999999889            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         |||+++++.++..++.+++....                    .....+++++.+.++|.|..+++..++++|+||+
T Consensus        75 ---rrr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~  131 (493)
T PRK15462         75 ---NRMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP  131 (493)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCC
Confidence               99999999999999987765431                    1123355667777788999999999999999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCC-CCChHHH--
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKP-IGSSLTR--  274 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~--  274 (540)
                      ++++    |+++++++|.++|+|++++|.+++++.+.+||+.+|.++++.+++++++++..++.+.+..+ ..++.++  
T Consensus       132 ~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~  207 (493)
T PRK15462        132 TDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATN  207 (493)
T ss_pred             CCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhh
Confidence            7543    89999999999999999999999999999999999999888888888888776665433211 1111110  


Q ss_pred             HHHH-----HHH-----HHHhhccCccccCccchhhhccccccccccccccCCCchhhhhh-hhhccCcccccccccccc
Q 041588          275 FVQV-----IVS-----YVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDK-AAVITDPETVRKDRWRLC  343 (540)
Q Consensus       275 ~~~v-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~-a~~~~~~~~~~~~~~~~~  343 (540)
                      ..+.     ...     .+.....          .+.            .  .+..-.... ....+-     .. .. .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~--~~~~~~~~~~~~~~~~-----~~-~~-~  256 (493)
T PRK15462        208 FLLPNWGWLLVLLVATPALITVLF----------WKE------------W--SVYALIVATIIGLGVL-----AK-IY-R  256 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------H--HHHHHHHHHHHHHHHH-----HH-HH-H
Confidence            0000     000     0000000          000            0  000000000 000000     00 00 0


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhH
Q 041588          344 TLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQA-AVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPI  422 (540)
Q Consensus       344 ~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~-~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~  422 (540)
                      ...+.+|+|++..++++++..++||+.|.|.++.+...+ +++|++++ |+++|++++|++|++.++++.|++.++|.++
T Consensus       257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l  335 (493)
T PRK15462        257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKES  335 (493)
T ss_pred             hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            012347899999999999999999999999999887777 57899988 8999999999999999999999999999877


Q ss_pred             hhhhcCCCCccc-----------------------cc-c-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhh
Q 041588          423 LRKLTGQTQCDV-----------------------KT-I-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSIS  469 (540)
Q Consensus       423 ~~r~~~~~~l~~-----------------------~~-~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~  469 (540)
                      .||. ++++...                       .+ . ++.+|+        +||.+.+|.+++++.+.+|++.+|.+
T Consensus       336 ~~~~-~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~  414 (493)
T PRK15462        336 VAGN-RTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVL  414 (493)
T ss_pred             hcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHH
Confidence            5542 2333100                       01 2 577777        99999999999999999999999999


Q ss_pred             HhHHHHHh-HHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHH--HHHHHHHhhcccCC
Q 041588          470 TAIFLSEI-GLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLN--FFVYFWVAWRYKGR  540 (540)
Q Consensus       470 ~~~~~~~~-~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~--~~~y~~~~~~~~~~  540 (540)
                      ||+|++.. ++|+.++..+.+.......+.+.   ..+-+...+..+|..++.+.++.  ++.+++..+..|+|
T Consensus       415 mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (493)
T PRK15462        415 TGIYMLLSGAIANYLAGVIADQTSQASFDASG---AINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR  485 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCccc---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999854 79999998888876421100000   00001124556777777766554  45556665555543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=9.8e-38  Score=343.03  Aligned_cols=306  Identities=27%  Similarity=0.510  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588           54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS  133 (540)
Q Consensus        54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~  133 (540)
                      ++||++.+++..|+++.+|++.+.+..+.+.+....++.+++||+++|+++|               |+++++++.+++.
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG---------------~~~tIl~~~ii~~   65 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLG---------------KFKTILYLSIVYV   65 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999               9999999999999


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHH
Q 041588          134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWF  213 (540)
Q Consensus       134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~  213 (540)
                      +|++++++++..+..+             ..+....+++++++++|.|+++|+..++++||++++++   ++|.++|+|+
T Consensus        66 lG~~llai~a~~~~~~-------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~f  129 (654)
T TIGR00926        66 VGHALLSFGAIPSSGH-------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFF  129 (654)
T ss_pred             HHHHHHHhccCccccc-------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHH
Confidence            9999998764311111             12345577899999999999999999999999986542   2488999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhh
Q 041588          214 FFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNH  286 (540)
Q Consensus       214 ~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~  286 (540)
                      |+++|+|+++++++.+++++..       ||..+|.+++++++++++++..++++++..+|.++++.++.+++..++|++
T Consensus       130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~  209 (654)
T TIGR00926       130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR  209 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999998543       699999999999999999999999999888888888888889988887765


Q ss_pred             ccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 041588          287 LEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLD  366 (540)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~  366 (540)
                      ..... .+                       ...+|+|+++...             ..+++||+|++++++++++..++
T Consensus       210 ~~~~~-~~-----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~i  252 (654)
T TIGR00926       210 FSTRS-EH-----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPM  252 (654)
T ss_pred             hccCC-cc-----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHH
Confidence            32111 00                       0125667664422             24578999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcC
Q 041588          367 LAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTG  428 (540)
Q Consensus       367 ~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~  428 (540)
                      ||+.+.|+.+.++.|+.+||++++ ++.+|+++++.+|++.++++.|++++.++|+++|++.
T Consensus       253 fw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~  313 (654)
T TIGR00926       253 FWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT  313 (654)
T ss_pred             HHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC
Confidence            999999999999999999998887 7899999999999999999999999989998877643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=6.5e-37  Score=329.95  Aligned_cols=426  Identities=15%  Similarity=0.171  Sum_probs=312.9

Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588           35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      .+++||.++.+++.+++||++||++.++++.|+++++|++..++..+.+.+....++.++++|+++||++|         
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G---------   79 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG---------   79 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc---------
Confidence            34688999999999999999999999999999999999999999999999999999999999999999559         


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                            |||+++++.+++.++.+++.++..                    ....++++++++++|.|+.+|+..++++|+
T Consensus        80 ------~r~~~~~g~~~~~~g~~~~~~~~~--------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~  133 (489)
T PRK10207         80 ------TKRTIVLGAIVLAIGYFMTGMSLL--------------------KPDLIFIALGTIAVGNGLFKANPASLLSKC  133 (489)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhcc--------------------chhHHHHHHHHHHhccccccCCHHHHHHHh
Confidence                  999999999999999999887631                    123456789999999999999999999999


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc--CCCCChH
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ--KPIGSSL  272 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l  272 (540)
                      ||+++++    |+.+++++|++.|+|+.++|.+++++.++.||+++|+++.+.++++++.+...++.+++.  +|++++.
T Consensus       134 ~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (489)
T PRK10207        134 YPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM  209 (489)
T ss_pred             cCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch
Confidence            9887632    678999999999999999999999999999999999998777777777777766555443  2323221


Q ss_pred             --HHHHHHH------HHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccccc
Q 041588          273 --TRFVQVI------VSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCT  344 (540)
Q Consensus       273 --~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~  344 (540)
                        .......      ...+...    . ++.. ......   ...+   .  .....++...                .+
T Consensus       210 d~~~~~l~~~~~~~~~~~~~~~----~-~~~~-~~~~~~---~~~~---~--i~~~~f~~~~----------------~~  259 (489)
T PRK10207        210 SFSKLLLVLLGSVVMIFVCAWL----M-HNVE-VANLVL---IVLS---I--VVTIIFFREA----------------FK  259 (489)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH----H-hhhh-HHHHHH---HHHH---H--HHHHHHHHHH----------------hc
Confidence              1111100      0000000    0 0000 000000   0000   0  0000001100                01


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHh
Q 041588          345 LTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPIL  423 (540)
Q Consensus       345 ~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~  423 (540)
                      .+ ..++++.+..+++++..+++|+++.|..+.+..+.. ++|++.. |+.+++++++++|++.++++.|+.+++++++.
T Consensus       260 ~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~  337 (489)
T PRK10207        260 LD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLG  337 (489)
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence            11 344667777888888999999999999988877775 4676655 78999999999999999999999998876665


Q ss_pred             hhhcCCCC----c-----------------cc-c---cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhh
Q 041588          424 RKLTGQTQ----C-----------------DV-K---TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSIS  469 (540)
Q Consensus       424 ~r~~~~~~----l-----------------~~-~---~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~  469 (540)
                      +|. .+++    +                 +. .   .. .+.+|+        +||.+.+|.+++++++.+|++++|.+
T Consensus       338 ~r~-~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~  416 (489)
T PRK10207        338 SKG-KDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFI  416 (489)
T ss_pred             hCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHH
Confidence            543 2222    0                 00 0   11 455666        99999999999999999999999999


Q ss_pred             HhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCC-CCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041588          470 TAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDL-NMSKLDYFYWILAGINGLNFFVYFWVAWRYK  538 (540)
Q Consensus       470 ~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~-n~~~~~~~f~~la~l~~~~~~~y~~~~~~~~  538 (540)
                      +|++++..++|+.+|..+.+.... ...   ..  |+. .++.+.++|..+++.+++..++++.+.++++
T Consensus       417 ~g~~~l~~~ig~~lg~~l~~~~~~-~~~---~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~  480 (489)
T PRK10207        417 LGMWFLTQAAAFLLGGYVATFTAV-PDN---IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN  480 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccc---cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887642 100   00  111 1234678899999888887777766666543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=5.2e-37  Score=330.13  Aligned_cols=419  Identities=16%  Similarity=0.162  Sum_probs=309.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH  113 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~  113 (540)
                      .+++|.++.+++.+++|++++|++.++++.|++++  +|++..+++.+.+.+.+..+++++++|+++||++|        
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G--------   77 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG--------   77 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc--------
Confidence            35678899999999999999999999999999987  99999999999999999999999999999999559        


Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588          114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD  193 (540)
Q Consensus       114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d  193 (540)
                             |||+++++.+++.++.++++++.                     +...+++++.+.++|.|+..|+..++++|
T Consensus        78 -------~~~~l~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~  129 (475)
T TIGR00924        78 -------TKKTMVLGGIVLMLGHFMLAMSI---------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGK  129 (475)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHhcc---------------------cHhHHHHHHHHHHhccccccCCHHHHHHH
Confidence                   99999999999999998888752                     34567788889999999999999999999


Q ss_pred             cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHH
Q 041588          194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLT  273 (540)
Q Consensus       194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~  273 (540)
                      ++|+++++   +|+++++++|++.|+|+.+||.+++++.+++||++.|+++++.++++++++...++.+++.++++++..
T Consensus       130 ~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (475)
T TIGR00924       130 LYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLS  206 (475)
T ss_pred             hcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcc
Confidence            99876522   278899999999999999999999999999999999999888777787777777766654433222211


Q ss_pred             H-----HH--HH----HHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccc
Q 041588          274 R-----FV--QV----IVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRL  342 (540)
Q Consensus       274 ~-----~~--~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~  342 (540)
                      +     ..  +.    +....+... ...  +... ..            ...+     ...-+...+... ...++   
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~------------~~~~-----~~~~~~~~~~~~-~~~~~---  261 (475)
T TIGR00924       207 GQGKTYGKLLLALLAALALVFFCAW-LMH--HVVI-AN------------ILLM-----TVTLAVIIFFFR-LAFKP---  261 (475)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHH-HHh--ccHH-HH------------HHHH-----HHHHHHHHHHHH-HHHhc---
Confidence            1     00  00    000011000 000  0000 00            0000     000000000000 00000   


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHh
Q 041588          343 CTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQ-AAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVP  421 (540)
Q Consensus       343 ~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q-~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p  421 (540)
                       +.++ +++++..+++++++..+++|+.|.|..+.+..+ ..++|++++ ++++|+++++++|++.+++++|++++++.+
T Consensus       262 -~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~  338 (475)
T TIGR00924       262 -RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR  338 (475)
T ss_pred             -cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence             1122 344555678999999999999999999987654 456888877 789999999999999999999999987766


Q ss_pred             HhhhhcCCCC--c--cc--------------------ccc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchh
Q 041588          422 ILRKLTGQTQ--C--DV--------------------KTI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSI  468 (540)
Q Consensus       422 ~~~r~~~~~~--l--~~--------------------~~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~  468 (540)
                      +.||. ..++  .  ..                    .+. ++.+|+        +||++.+|++++++++++|+++||.
T Consensus       339 l~~~~-~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~  417 (475)
T TIGR00924       339 LGRKG-KDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ  417 (475)
T ss_pred             HHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence            66652 2222  1  00                    012 477777        9999999999999999999999999


Q ss_pred             hHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041588          469 STAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY  537 (540)
Q Consensus       469 ~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~  537 (540)
                      ++|++.+..++|+.+++.+.......               .+...+|..++.++++..++++...++.
T Consensus       418 ~~g~~~l~~~~g~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       418 MLGMWFLAQAMGSLLGGYLATFGAVP---------------QGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc---------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988765421               1233577777777777766666666554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.4e-34  Score=313.10  Aligned_cols=425  Identities=15%  Similarity=0.208  Sum_probs=304.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      .+++|.++.+++.+++|++++|++.++++.|+++++|++..+++.+.+.+....+..++++|+++||++|          
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G----------   86 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLG----------   86 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence            3567889999999999999999999999999999999999999998888888888888899999999559          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           ||++++++.++..++..+++++.                    .....+++++.++++|.|...++..++++|++
T Consensus        87 -----~r~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f  141 (500)
T PRK09584         87 -----TKRVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCY  141 (500)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhc
Confidence                 99999999999999988887652                    12445677888999999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc--CCCCChHH
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ--KPIGSSLT  273 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~  273 (540)
                      |+++++    |..+++++|++.|+|+.++|.+++++.++.||++.|+++++..+++++.++..++.+++.  +|++++..
T Consensus       142 ~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~  217 (500)
T PRK09584        142 EKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPIN  217 (500)
T ss_pred             CCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccc
Confidence            876532    566889999999999999999999999999999999998877777776665554443332  22222211


Q ss_pred             --H----HHHHHHHH-HHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccch
Q 041588          274 --R----FVQVIVSY-VRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLT  346 (540)
Q Consensus       274 --~----~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~  346 (540)
                        .    ...+.... .......    +.+. ...           ...........+....             .+. .
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~-----------~~~~~~~~~~~~~~~~-------------~~~-~  267 (500)
T PRK09584        218 YRKLLLTIVGVVALIAIATWLLH----NQEI-ARM-----------ALGVVALGIVVIFGKE-------------AFA-M  267 (500)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHh----cchH-HHH-----------HHHHHHHHHHHHHHHH-------------Hhh-c
Confidence              1    11111111 1110000    0000 000           0000000000000000             011 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhh
Q 041588          347 QVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAA-VMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRK  425 (540)
Q Consensus       347 ~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~-~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r  425 (540)
                      +.+|+++.+..+++++..++||+.+.|.++.+..|+. ++|+++. |+.+|+++++++|++.++++.|+.++++.++.+|
T Consensus       268 ~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r  346 (500)
T PRK09584        268 KGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR  346 (500)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC
Confidence            2356677777888899999999999999999988875 4666666 7899999999999999999999999987766655


Q ss_pred             hcCCCCccc----------------c----cc-hhHHHH--------HHHHHHhhhhHHHHHhhhccccchhhHhHHHHH
Q 041588          426 LTGQTQCDV----------------K----TI-LSHLWH--------SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSE  476 (540)
Q Consensus       426 ~~~~~~l~~----------------~----~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~  476 (540)
                      .....++..                .    .. ++.+|+        ++|++.+|.+++++++.+|+++||+++|+|++.
T Consensus       347 ~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~  426 (500)
T PRK09584        347 LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT  426 (500)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            321111100                0    11 445666        799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCCccCcC-CCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 041588          477 IGLGSCLSNALVKIIERATGGQEEGWLRND-LNMSKLDYFYWILAGINGLNFFVYFWVAWR  536 (540)
Q Consensus       477 ~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~-~n~~~~~~~f~~la~l~~~~~~~y~~~~~~  536 (540)
                      .++|+.++..+.+....  +    .=..+. ...+.+..+|..+++++++..++++...++
T Consensus       427 ~a~g~~~~g~~~~~~~~--~----~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~  481 (500)
T PRK09584        427 TAGAALIAGYVANLMAV--P----DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPK  481 (500)
T ss_pred             HHHHHHHHHHHHHHhcc--c----cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988875541  0    000011 111346778888888777666555555544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.96  E-value=3.7e-29  Score=261.18  Aligned_cols=329  Identities=35%  Similarity=0.561  Sum_probs=224.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      +|+++++.+++++|++++++++..+..            +++.+...+++++.++++|.|+++|++.++++||++++++ 
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~-   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD-   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT-
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch-
Confidence            589999999999999999888654332            1234578899999999999999999999999999998742 


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc-CCCCChHHH-HHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ-KPIGSSLTR-FVQVI  279 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~-~~~v~  279 (540)
                        .+|.++|+|+|+++|+|+.+++.+.+++++++||.++|+++++++++++++++.++++|++. +|.++++.+ ...+.
T Consensus        68 --~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~  145 (372)
T PF00854_consen   68 --SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVL  145 (372)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHH
T ss_pred             --hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHH
Confidence              23899999999999999999999999999999999999999999999999999999999988 678888887 45555


Q ss_pred             HHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCccccccccccc-ccchhHHHHHHHHHHH
Q 041588          280 VSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRL-CTLTQVEELKSFIRIL  358 (540)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~-~~~~~v~~~k~~~~~l  358 (540)
                      ....+++....+ .....+++.....+    +....  ......+.+.....    ....|.. ++++++++.|.+.+.+
T Consensus       146 ~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~k~~~~~~  214 (372)
T PF00854_consen  146 VAAFKKRKLAVP-KGSSWLDWALFQYS----ERSIF--GIIVFIRAAVIFFP----EIFFWALFCQVQRVEELKALIRFL  214 (372)
T ss_dssp             HHHHHHHCCCH--HHHHHHHHHHHHHC----CCCCC--CCCCHHHHHHHHCC----CHHHHTTTSSTTTHHHCCHHHCHH
T ss_pred             HHHHHHhhcccc-cchHHHHHhhhhhh----hhhhh--hhhhhccchhhhhh----hhhhcccCCccceeeeeeeeeecc
Confidence            555565554443 11111111110000    00000  00011111111000    0111221 4567889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-c-----
Q 041588          359 PIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-C-----  432 (540)
Q Consensus       359 ~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-l-----  432 (540)
                      +.+...++++..+.|..++...|..++|+.+++.+++|+++++.+|++.++++.|++|++++|+.|+. ..++ +     
T Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~~~~~~k~~~  293 (372)
T PF00854_consen  215 PIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQPSPPQKFGI  293 (372)
T ss_dssp             HCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-------HHHHHH
T ss_pred             ccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc-ccchhhhhhhH
Confidence            99999999999999999999999989988887238999999999999999999999999999999833 3332 1     


Q ss_pred             ---------------ccc---------------cc-hhHHHHHHHHHHhhhhHHHHHhhhccccchhhHhHHHHHh
Q 041588          433 ---------------DVK---------------TI-LSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEI  477 (540)
Q Consensus       433 ---------------~~~---------------~~-~s~~~~~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~  477 (540)
                                     |.+               .+ ++++|+++|.+.++.+.+..++.+|++..+..+|+++...
T Consensus       294 G~~~~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  294 GMVFAILAMFVAAIVEIRRLCYAQPCGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS  369 (372)
T ss_dssp             H-HHHHHHHHTTTHHHH---HH----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence                           221               12 5566669999999999997777777777777777776544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10054 putative transporter; Provisional

Probab=99.85  E-value=6e-19  Score=185.76  Aligned_cols=176  Identities=14%  Similarity=0.203  Sum_probs=150.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      .+|+++.+++..++...+++.+.++++.|+++++|++..+.++..+.+.+...++.++.|+++||+ |            
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g------------   71 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-D------------   71 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C------------
Confidence            347788899999999999999999999999999999999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||+++.++.++..++.+++.++.                     +...+++.+.+.+.+.+...++..+..+|.+|+
T Consensus        72 ---~k~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  127 (395)
T PRK10054         72 ---KKRYMLLAITAFASGFIAIPLVN---------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS  127 (395)
T ss_pred             ---cchhHHHHHHHHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence               99999999988888888777662                     345566666677777677778888888999987


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      ++      |++++++.+...++|..++|.+++++.+ .||+..|++.++..+++++....
T Consensus       128 ~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        128 TS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence            65      8999999999999999999999999875 69999999877776666544433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.85  E-value=1.8e-18  Score=181.65  Aligned_cols=174  Identities=12%  Similarity=0.129  Sum_probs=144.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      |...+.+.+..++.....|...+.+| .+.+++|.+..+.+...+.+.+...++.++.|+++||+ |             
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g-------------   72 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-E-------------   72 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-------------
Confidence            44456666656665555554444444 45678999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        |||++..+.++..++.+....+                     .+.+.++++++++|++.+...+...++..|++|++
T Consensus        73 --~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~  129 (390)
T PRK03545         73 --RRKLLIGLFVLFIASHVLSALA---------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG  129 (390)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence              9999999999999998888776                     35778888999999999888888889999999987


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +      |+.+++++..+.++|..++|.+++.+.+..||++.|++.++..++..+...
T Consensus       130 ~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        130 K------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             h------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            6      999999999999999999999999999989999999987776655544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.85  E-value=9.2e-19  Score=184.66  Aligned_cols=171  Identities=15%  Similarity=0.192  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.++...++.+.+++.+.+.++.|+.+++|+|..+.++..+.......+..+++|+++||+ |               ||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g---------------~k   76 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-G---------------AK   76 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-C---------------ch
Confidence            6777889999999999999999999999999999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +++.++.++..++.+.+...                     .+.+.+++.+++.+++.+...|+..++..|.+|+++   
T Consensus        77 ~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  132 (400)
T PRK11646         77 PMIVTGMLMRAAGFATMAIA---------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ---  132 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---
Confidence            99999999999988888765                     246677888899999988888888999999998766   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                         |++++++.+...++|..++|.+++++. ..||++.|++.++..+++.++...
T Consensus       133 ---~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        133 ---RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999998 679999999877665555444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.83  E-value=2e-17  Score=173.91  Aligned_cols=174  Identities=14%  Similarity=0.030  Sum_probs=147.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+..+++..+...+......+.++.|+.+++|.|..+.+++.+.+.+...++.++.|+++||+ |              
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g--------------   79 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-G--------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-C--------------
Confidence            5677788888888899888899999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||++..+.+++.++.+.+..+.....             ....+...+++.+++.|++.+...++..+...|.+|+++
T Consensus        80 -~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  145 (399)
T PRK05122         80 -PKKAVVFGLCGCALSGLLYLLAGLLAA-------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH  145 (399)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHhhhhhc-------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh
Confidence             999999999888887666555421110             001245678889999999999999999898999998876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFT  248 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~  248 (540)
                            |++..+++..+.++|..++|.+++++.+..||+..+++..+..
T Consensus       146 ------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~  188 (399)
T PRK05122        146 ------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLA  188 (399)
T ss_pred             ------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                  8899999989999999999999999999999998887655543

>PRK12382 putative transporter; Provisional

Probab=99.83  E-value=1.4e-17  Score=174.72  Aligned_cols=172  Identities=10%  Similarity=0.027  Sum_probs=141.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++.+.+..++...+.....+.+|.|+.+++|.|..+.+.+.+.+.....++.+++|+++||+ |              
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g--------------   79 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-G--------------   79 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-c--------------
Confidence            5667777777888888888888999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++.+.++..++.+........+..             ...+...+++++++.|++.+...+...+...|.+|+++
T Consensus        80 -~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  145 (392)
T PRK12382         80 -AKRSALQGMLACGLAGLAYLLAAILPVS-------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH  145 (392)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhhhccccc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence             9999999988777665443333211110             01356778899999999999888888888899998876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTA  246 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~  246 (540)
                            |+++++++..+.++|..++|.+++++.+..||+..+.+..+
T Consensus       146 ------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  186 (392)
T PRK12382        146 ------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV  186 (392)
T ss_pred             ------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence                  99999999999999999999999999998999977654433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.83  E-value=2e-17  Score=174.23  Aligned_cols=177  Identities=15%  Similarity=0.135  Sum_probs=145.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      .+|.......+..+++.+..+.....+|. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |           
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g-----------   78 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-G-----------   78 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence            34445555556666666666666555554 4567999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          |||++.++.++..++.+++...                     .+...+++.+++.|++.+...+...++.+|.+|
T Consensus        79 ----~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  133 (406)
T PRK11551         79 ----RKRILIVSVALFGLFSLATAQA---------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVG  133 (406)
T ss_pred             ----CchhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence                9999999998888887776665                     246778889999999999988999999999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +++      |++.+++++.+.++|+.+++.+++.+.+..+|+..|++.+++.++..++...
T Consensus       134 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK11551        134 PRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMR  188 (406)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            876      9999999999999999999999988888889999998876655554444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.83  E-value=6.3e-18  Score=175.31  Aligned_cols=155  Identities=20%  Similarity=0.212  Sum_probs=135.5

Q ss_pred             HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 041588           63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVS  142 (540)
Q Consensus        63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~  142 (540)
                      ...++.+++|.+..+.+.+.+.+.+...++.++.|+++||+ |               ||+++.++.++..++..++..+
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-G---------------ARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-C---------------cceeeHHHHHHHHHHHHHHHHH
Confidence            34457789999999999999999999999999999999998 9               9999999999999988888776


Q ss_pred             cccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588          143 GSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI  222 (540)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  222 (540)
                                           .+.+.+++++++.|++.+...+...++..|.+|+++      |+..+++.+...++|..
T Consensus        80 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~  132 (399)
T TIGR00893        80 ---------------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGI  132 (399)
T ss_pred             ---------------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHH
Confidence                                 247788899999999999999999999999998876      99999999999999999


Q ss_pred             HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          223 FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       223 i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++|.+++++.+..||++.|++.++..++..++.....+
T Consensus       133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       133 IGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            99999999999999999998877766655555444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=2.5e-17  Score=173.31  Aligned_cols=173  Identities=14%  Similarity=0.049  Sum_probs=141.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT-----AGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~-----a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      |....+.+..++...+++...+.+|.|++ ++|.+..+     .+.+.+++.+...++.++.|+++||+ |         
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g---------   82 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-G---------   82 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-C---------
Confidence            45566677888888888888899999986 58888654     37888888999999999999999998 9         


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                            ||+++..+.++..++.+++...                     .+.+.+++++++.+++.+ ..+...+...|+
T Consensus        83 ------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~  134 (408)
T PRK09874         83 ------RKIMLLRSALGMGIVMVLMGLA---------------------QNIWQFLILRALLGLLGG-FVPNANALIATQ  134 (408)
T ss_pred             ------cHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence                  9999999998888888777665                     246678888888888755 456677788888


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +|+++      |+...++++.+.++|..++|.+++++.+..||+..|++.++..+++.+....
T Consensus       135 ~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        135 VPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             cCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            88765      8899999999999999999999999999899999998877766655554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.80  E-value=3.9e-17  Score=168.20  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH
Q 041588           44 FIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR  123 (540)
Q Consensus        44 ~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~  123 (540)
                      .++...++..++.......+|.|.. +++.+..+.+.+.+.+.+...++.++.|+++||+ |               |||
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g---------------~r~   65 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-D---------------RKK   65 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-c---------------hhH
Confidence            3556777777777777788888876 4899999999999999999999999999999998 9               999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588          124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA  203 (540)
Q Consensus       124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~  203 (540)
                      +++.+.++..++..++......+                ..+.+.+++++++.+++.+...++..++.+|.+|+++    
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----  125 (365)
T TIGR00900        66 VMIGADLIRAVLVAVLPFVALLG----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ----  125 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----
Confidence            99999988888777776653111                1257788889999999999999999999999998875    


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                        |++.+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+....
T Consensus       126 --~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       126 --LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence              9999999999999999999999999999899999998877666555544433

>PRK10504 putative transporter; Provisional

Probab=99.80  E-value=1.5e-16  Score=171.19  Aligned_cols=178  Identities=14%  Similarity=0.126  Sum_probs=152.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++..+..+.+.+.+|.|.. ++|.+..+.+.+.+.+.+...++.+++|+++||+ |              
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g--------------   73 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-G--------------   73 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence            46788888888888888888888888875 6999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++.+..+..++.++...+                     .+...+++++++.|++.+...|...+...|.+|+++
T Consensus        74 -~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  131 (471)
T PRK10504         74 -VRNIFFTAIVLFTLGSLFCALS---------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ  131 (471)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH
Confidence             9999999988888888776654                     246678889999999999999999999999998765


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                            |++++++.+...++|..++|.+++++.++.||++.|++.....+++.++.....++
T Consensus       132 ------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        132 ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             ------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  88999999999999999999999999999999999998777666665555444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.80  E-value=5.9e-17  Score=172.74  Aligned_cols=167  Identities=14%  Similarity=0.033  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +..++..++..+..+.+...+|.+. +++|++..+.+.+.+.+.++..++.+++|+++||+ |               ||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g---------------~r   88 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-N---------------AR   88 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-C---------------Cc
Confidence            3344444444444445556666665 56999999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +++.++.++..++.+++..+                     .+...+++.+++.+++.|...+...+++.|++|+++   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---  144 (434)
T PRK11663         89 YFMGIGLIATGIINILFGFS---------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE---  144 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH---
Confidence            99999999999998888776                     346677778888899988888888999999998876   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i  253 (540)
                         |+.++++++.+.++|+.++|.+++++.+..||++.|++.++..++..+
T Consensus       145 ---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        145 ---RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999999999999999887665544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.79  E-value=8.7e-17  Score=170.30  Aligned_cols=179  Identities=12%  Similarity=0.079  Sum_probs=144.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +|+..+.+.+..+++..-...+.. ....+.+++|++..+.+++.+.+..+..++.+++|+++||+ |            
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G------------   71 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-G------------   71 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-C------------
Confidence            345545555544444444444433 34478899999999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||+++.++.++..++.++.+++                     .+...+++++++.|++.++..|....+.+|.+|+
T Consensus        72 ---~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (412)
T TIGR02332        72 ---ARRWIAGIMVLWGIASTATMFA---------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA  127 (412)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH
Confidence               9999999999999999988876                     2467788999999999999988888889999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE------QKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~------~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++      |+...++++.+.++|..+++.+++++.+      ..|||+.|++.++..++..++..+..+
T Consensus       128 ~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       128 YF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence            76      8999999999999999999999998864      369999999877666554444444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.79  E-value=1.2e-16  Score=167.45  Aligned_cols=175  Identities=15%  Similarity=0.198  Sum_probs=148.8

Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588           34 RTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH  113 (540)
Q Consensus        34 ~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~  113 (540)
                      ..+.+|+.+....+..+...+..+.+....+ .+.+++|++..+.+.+.+.+.+...++.++.|+++||+ |        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g--------   75 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-G--------   75 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------
Confidence            3456667777778888888888877766665 45778999999999999999999999999999999998 9        


Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588          114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD  193 (540)
Q Consensus       114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d  193 (540)
                             ||++++++.++..++.+++.++                     .+...+++++++.|++.+...+...++..|
T Consensus        76 -------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  127 (405)
T TIGR00891        76 -------RRLPMVTSIVLFSAGTLACGFA---------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIE  127 (405)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence                   9999999999888888887765                     246778889999999999999999999999


Q ss_pred             cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC--cchhhhHhHHHHHHHH
Q 041588          194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG--WSVGFGIPTAFTICSI  252 (540)
Q Consensus       194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~~~  252 (540)
                      .+|+++      |+.+.++++.+.++|..+++.+++.+.+..+  |++.|.+.++..++.+
T Consensus       128 ~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       128 SWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             hCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            998876      8999999999999999999999999887766  9999987655444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.79  E-value=5.1e-17  Score=172.09  Aligned_cols=175  Identities=13%  Similarity=0.090  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      +..++...++..++.......+|.+.. +++.+..+.+++.+.......++.+++|+++||+ |               |
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g---------------~   81 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-D---------------R   81 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-C---------------C
Confidence            344555567777776666677777764 5778999999999999999999999999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |+++.++..+..++.+.+.......                ..+...+++.+++.+++.+...++..++..|.+|+++  
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--  143 (417)
T PRK10489         82 KKLILLARGTCGLGFIGLALNAFLP----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN--  143 (417)
T ss_pred             ceEEEehHHHHHHHHHHHHHHHHcC----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH--
Confidence            9999998888777776655421111                1245667778888888888777888888899988765  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                          |+++.++.+.+.++|..+||.+++++.+..||++.|++.++..+++.+..
T Consensus       144 ----~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        144 ----LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             ----HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                88889999999999999999999999988899999988766665554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.79  E-value=3.9e-16  Score=164.38  Aligned_cols=175  Identities=15%  Similarity=0.167  Sum_probs=147.7

Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588           35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      ++..|+....+.+..++....-|.....+|.+ .+++|++..+.+...+.+.....++.++.|+++||+ |         
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g---------   83 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-D---------   83 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C---------
Confidence            34466666666666566666666666667664 568999999999999999999999999999999998 9         


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                            |||++..+.++..++.++...+                     .+.+.+++.+++.|++.+...+...++..|.
T Consensus        84 ------rr~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  136 (394)
T PRK10213         84 ------RRYVVILFAVLLTLSCLLVSFA---------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRL  136 (394)
T ss_pred             ------cHHHHHHHHHHHHHHHHHHHHH---------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                  9999999999999988887765                     3578899999999999999999999999999


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i  253 (540)
                      +|+++      |+.+.++...+.++|..++|.+++++.+..||++.|++.++..++..+
T Consensus       137 ~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        137 VPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             cCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            98876      899999999999999999999999999999999999887665544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.78  E-value=1.7e-16  Score=161.98  Aligned_cols=171  Identities=18%  Similarity=0.265  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.+....+.....++...+.++.|.. ++|.+..+.+...+.......++.++.|+++||+ |               ||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g---------------~r   64 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-G---------------RR   64 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C---------------Cc
Confidence            34566777888888888888888875 5799999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      |.+.++.++..++.+.+...                     .+...+++++.+.+++.+...+...++..|.+|+++   
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  120 (352)
T cd06174          65 RVLLLGLLLFALGSLLLAFA---------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE---  120 (352)
T ss_pred             hhhHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---
Confidence            99999999999998888776                     246778889999999999999999999999999876   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                         |++.+++.+...++|..++|.+++.+.+..+|+..|++.++..+++.+....
T Consensus       121 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (352)
T cd06174         121 ---RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF  172 (352)
T ss_pred             ---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence               9999999999999999999999999999989999999887776666555433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.78  E-value=1.4e-17  Score=170.92  Aligned_cols=170  Identities=19%  Similarity=0.329  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588           46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL  125 (540)
Q Consensus        46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i  125 (540)
                      ++..++..+........++.++.+++|.+..+.+++.+.+.....++.+++|+++||+ |               |||++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r~~l   65 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-G---------------RRRVL   65 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------HHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------CeeeE
Confidence            4556677777777777887788899999999999999999999999999999999998 9               99999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588          126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ  205 (540)
Q Consensus       126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~  205 (540)
                      .++.++..++.++..++.                     +.+.+++++++.|++.+...++..++..|.+|+++      
T Consensus        66 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------  118 (352)
T PF07690_consen   66 IIGLLLFALGSLLLAFAS---------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------  118 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------
T ss_pred             eehhhhhhhHHHHhhhhh---------------------hHHHHhhhccccccccccccccccccccccchhhh------
Confidence            999999999855555541                     34578899999999999999999999999999977      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          206 KYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       206 r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      |+..+++.+.+.++|..++|.+++++.+..||++.|++.++..+++.++....
T Consensus       119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~  171 (352)
T PF07690_consen  119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF  171 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence            99999999999999999999999999988999999999888877776654333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.78  E-value=5.7e-16  Score=163.43  Aligned_cols=174  Identities=16%  Similarity=0.115  Sum_probs=138.1

Q ss_pred             chHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFF---AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y---~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      +..+.++...+.+...++   .+.+.++. +.+++|.+..+.+...+.+.++..++.++.|+++||+ |           
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g-----------   76 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-G-----------   76 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence            444444444444444343   34444444 4578999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          |||++.++..+..++.+....+                     .+.+.+++.+++.|++.+...+...+...|.+|
T Consensus        77 ----~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~  131 (406)
T PRK15402         77 ----RRPVMLAGVAFFILTCLAILLA---------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFE  131 (406)
T ss_pred             ----ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhC
Confidence                9999999998888888877765                     246677888999999988888888888999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +++      |.+..++.+....+|..++|.+++++.++.||++.|++.++..+++.+....
T Consensus       132 ~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        132 EAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             hhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            876      7778888888888999999999999999899999998877776665554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.78  E-value=3.4e-16  Score=163.17  Aligned_cols=162  Identities=19%  Similarity=0.161  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHH
Q 041588           52 ERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCI  131 (540)
Q Consensus        52 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~  131 (540)
                      +..++....+.+|. +.+++|++..+.+.+.+.+..++.++.+++|+++||+ |               ||+++..+...
T Consensus         3 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-g---------------rr~~~~~~~~~   65 (368)
T TIGR00903         3 SQAIWVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-F---------------KRWFLFGSLAT   65 (368)
T ss_pred             hhHHHHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c---------------chHHHHHHHHH
Confidence            34445545555554 5678999999999999999999999999999999998 9               99987655544


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588          132 YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN  211 (540)
Q Consensus       132 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  211 (540)
                      ...+.......                     .+...++++|++.|+|.+.. .+..+..+|.+|+++      |++..+
T Consensus        66 ~~~~~~~~~~~---------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~  117 (368)
T TIGR00903        66 FAAAAGRLLDP---------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVIS  117 (368)
T ss_pred             HHHHHHHHHHh---------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHH
Confidence            44443222211                     24678999999999999864 444555689998765      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +.+.+.++|..+++.+++++.++.|||..|++.++..++..+++...
T Consensus       118 ~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903       118 LLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988666655554444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.4e-17  Score=177.14  Aligned_cols=351  Identities=17%  Similarity=0.187  Sum_probs=241.1

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588           70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR  149 (540)
Q Consensus        70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~  149 (540)
                      +++++..+-+.+.+.+..++.++++.+|+++||+ |               -|+++..+.++.++++++.+++..     
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G---------------~r~v~~~~~~~sa~~t~l~P~aa~-----  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-G---------------ARRVFFISGLISALLTLLTPLAAS-----  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-C---------------chHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            5788999999999999999999999999999998 9               999999999999999999999853     


Q ss_pred             CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588          150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV  229 (540)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~  229 (540)
                                    .....+++.|+++|++.|...|+...+.+.+.|+++      |+++.++.+.+..+|.+++..++|
T Consensus       126 --------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg  185 (466)
T KOG2532|consen  126 --------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSG  185 (466)
T ss_pred             --------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHH
Confidence                          223467899999999999999999999999999988      999999999999999999999999


Q ss_pred             hhhhc-cCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhccccccc
Q 041588          230 YIQEQ-KGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDI  308 (540)
Q Consensus       230 ~l~~~-~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (540)
                      ++.+. .||+..|++.+++.++..+++.....+    +|+.++..+                  ++|.            
T Consensus       186 ~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d----~P~~h~~is------------------~~El------------  231 (466)
T KOG2532|consen  186 LLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD----SPSKHPNIS------------------EKEL------------  231 (466)
T ss_pred             HHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC----CcccCCCCC------------------HHHH------------
Confidence            99988 999999999888766665555443321    233222100                  0000            


Q ss_pred             cccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccC
Q 041588          309 FGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRN  388 (540)
Q Consensus       309 ~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~  388 (540)
                                  ..+++.+.....+....-|           .|++++-.|+|+..+..+.-..........+...|+..
T Consensus       232 ------------~~I~~~k~~~~~~~~~~vP-----------~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V  288 (466)
T KOG2532|consen  232 ------------KYIEKGKSEAHVKKKPPVP-----------YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV  288 (466)
T ss_pred             ------------HHHHhcccccccCCCCCCC-----------HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                        0111111000000000112           45556666777666555544444444444444555533


Q ss_pred             CCCCcee-cCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-----cccc-------------------cchhHHHH
Q 041588          389 LGSNFTI-PTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-----CDVK-------------------TILSHLWH  443 (540)
Q Consensus       389 ~~~g~~i-~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-----l~~~-------------------~~~s~~~~  443 (540)
                      +  ++.+ ..+.+.+++.+...+...+.+.+.|.+.+| .....     +...                   ...++..+
T Consensus       289 L--~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l  365 (466)
T KOG2532|consen  289 L--GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL  365 (466)
T ss_pred             h--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH
Confidence            3  2333 457788888888888888888877777665 33222     1000                   00122222


Q ss_pred             -HHHH---HHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHH
Q 041588          444 -SAEV---FTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWIL  519 (540)
Q Consensus       444 -~~e~---~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~l  519 (540)
                       ++..   +...+.+--..+.+| ++-+..+|+.+....+...++|.+++.+.+ . ++.++|          .++|++.
T Consensus       366 ~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-~t~~eW----------~~VF~i~  432 (466)
T KOG2532|consen  366 TIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-NTREEW----------RIVFLIA  432 (466)
T ss_pred             HHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-CCHHHH----------HHHHHHH
Confidence             3333   333333334444477 888999999999999999999999987653 1 112234          4789999


Q ss_pred             HHHHHHHHHHHHHHh
Q 041588          520 AGINGLNFFVYFWVA  534 (540)
Q Consensus       520 a~l~~~~~~~y~~~~  534 (540)
                      |++.++..++|.+++
T Consensus       433 a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  433 AGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHhchheeEee
Confidence            999999888887764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.78  E-value=2.9e-16  Score=163.11  Aligned_cols=172  Identities=15%  Similarity=0.136  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588           46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL  125 (540)
Q Consensus        46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i  125 (540)
                      ++..++..+++....+.++.|+.+++|.+..+.+.+.+.+.+...+..++.|+++||+ |               |||.+
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g---------------~r~~~   66 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-G---------------DRKGL   66 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C---------------CchHH
Confidence            4456777888888899999999999999999999999999999999999999999998 9               99887


Q ss_pred             HHHH-HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          126 VVFS-CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       126 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      ++.. .+..++.++...+                     .+...+++.+.+.+.+.+...|...++..|..+++.     
T Consensus        67 ~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----  120 (375)
T TIGR00899        67 ILFCCLLAALACLLFAWN---------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-----  120 (375)
T ss_pred             HHHHHHHHHHHHHHHHhc---------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----
Confidence            6544 4445555555544                     235566667777777766677777777777766543     


Q ss_pred             hhhh--hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          205 QKYV--FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       205 ~r~~--~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                       |..  ..++...+.++|..++|.+++++.+..||++.|++.++..++..+..+...|
T Consensus       121 -~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       121 -REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence             333  3577778889999999999999999899999999887776665555444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.78  E-value=1.1e-15  Score=160.82  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=127.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW-IGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~-~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      .+..+..++..++.+++...+.+.++.|+.+++|.|.++.+++.+.. .....++++++|+ +||+ |            
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g------------   79 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-G------------   79 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-c------------
Confidence            45668888889999999999999999999999999999999987765 4455566777777 9998 9            


Q ss_pred             cccchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          118 LQGRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       118 ~~~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                         |||.+++ +.++..++..++.++                     .+...+++...+.+...+...|...++..|..+
T Consensus        80 ---~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (393)
T PRK15011         80 ---DRKSLIVFCCLLGVLACTLFAWN---------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHAD  135 (393)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence               9887654 445555665555554                     234444333333333334556677777777665


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      +++.    ..+...++.+.+.++|..++|.+++++.++.||+..|++.++..++..+..+...|
T Consensus       136 ~~~~----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        136 KTGR----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             hccc----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4430    02334467888999999999999999999999999998877766555555444333

>TIGR00895 2A0115 benzoate transport

Probab=99.77  E-value=3.2e-16  Score=163.33  Aligned_cols=175  Identities=16%  Similarity=0.157  Sum_probs=140.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      ++.....++..+.....++.... ...++.+++|.+..+.+.+.+....+..++.+++|+++||+ |             
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g-------------   80 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-G-------------   80 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-h-------------
Confidence            34444444444444444444443 34456678999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        ||+++.++.++..++.+++...                     .+...+++.+++.|++.+...+...++.+|.+|++
T Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  137 (398)
T TIGR00895        81 --RKRVLLWSILLFSVFTLLCALA---------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR  137 (398)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHc---------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH
Confidence              9999999998888888777765                     24567788899999999999999999999999877


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +      |+..+++++.+.++|..++|.+++++.+..||+..|++.++..++..++...
T Consensus       138 ~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       138 F------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             h------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            6      8999999999999999999999999999999999998876554444444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.77  E-value=4.7e-16  Score=162.78  Aligned_cols=155  Identities=14%  Similarity=0.117  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.++...++...++..+.+.+|.|+. ++|.|..+++++.+.+.++..++.++.|+++||+ |              
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g--------------   69 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-G--------------   69 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H--------------
Confidence            56788889999999999999999999987 6899999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++..+.++..++....+.+                     .+.+.+++++++.|++.+...+...+...|..++++
T Consensus        70 -~k~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  127 (381)
T PRK03633         70 -FNRSYYLASLIFAAGCAGLGLM---------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN  127 (381)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999999988887766                     346778889999999999888877777778877655


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                            |++.+++++.+.++|..++|.+++++.+...+.
T Consensus       128 ------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        128 ------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence                  889999999999999999999999987754333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.77  E-value=6.3e-16  Score=165.70  Aligned_cols=173  Identities=12%  Similarity=0.013  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAI---AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~---~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...++....+|..   .+....|+.++ |++..+.++..+.+.+...++.+++|+++||+ |              
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g--------------   91 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N--------------   91 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-C--------------
Confidence            33344444444444433   22334467777 99999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++.++..++.+++.+...                 ...+...+++.+++.|++.|...+.......|++|+++
T Consensus        92 -~k~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~  153 (452)
T PRK11273         92 -PRVFLPAGLILAAAVMLFMGFVPW-----------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  153 (452)
T ss_pred             -CchhHHHHHHHHHHHHHHHHhhhc-----------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH
Confidence             999999999998888887776521                 01245667788889999999888888888899998876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAI-FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~-i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                            |+.++++++.+.++|+. .+|.++..+....||++.|++.++..++..++.
T Consensus       154 ------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        154 ------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             ------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence                  99999999999999875 455544334344589999998776655544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.77  E-value=5.6e-16  Score=162.29  Aligned_cols=174  Identities=14%  Similarity=0.169  Sum_probs=148.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++.+.+..+......+...+.+|.+ .+++|.+..+.+...+.+..+..++.++.|+++||+ |              
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g--------------   66 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-S--------------   66 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-c--------------
Confidence            566777788888888888777877664 568999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++..+..++.++++.+                     .+.+.+++.+++.|++.+...+...++..|.+|+++
T Consensus        67 -~r~~~~~~~~~~~~~~~l~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  124 (382)
T PRK10091         67 -LKHILLFLVALCVIGNAMFTLS---------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK  124 (382)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence             9999999999999999888776                     357888899999999999887888888889887765


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                            |+..++++..+.++|..++|.+++++.+..||++.|++.++..++..+....
T Consensus       125 ------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        125 ------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             ------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence                  7888999889999999999999999999899999999877765555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.77  E-value=6.2e-16  Score=161.06  Aligned_cols=176  Identities=13%  Similarity=0.094  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+.+.+..+....+.....+.+|. +.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |              
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g--------------   68 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-G--------------   68 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C--------------
Confidence            44445555555555665555555554 4678999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++.++..++.+.+...                     .+...+++.+++.+++.+...+...++..|.+|+++
T Consensus        69 -~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  126 (385)
T TIGR00710        69 -RRPVLLLGLFIFALSSLGLALS---------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE  126 (385)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence             9999999999998888887766                     246678888999999999999999999999998766


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                            |++.+++.+...++|..++|.+++++.+..||+..|++.++..++..+......
T Consensus       127 ------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       127 ------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  899999999999999999999999999989999999887776666555544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.77  E-value=1.9e-16  Score=163.66  Aligned_cols=157  Identities=12%  Similarity=0.151  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588           56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG  135 (540)
Q Consensus        56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~  135 (540)
                      .|.... +..++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |               ||+++.++.++..++
T Consensus        19 ~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G---------------~r~~~~~~~~~~~~~   81 (377)
T TIGR00890        19 VYTWTL-LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-G---------------PRAVAMLGGILYGLG   81 (377)
T ss_pred             Hhhhhh-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-C---------------ccchhHHhHHHHHHH
Confidence            444433 45667789999999999999999999999999999999998 9               999999999999999


Q ss_pred             HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHH
Q 041588          136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFF  215 (540)
Q Consensus       136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~  215 (540)
                      .++...+                     .+...+++++.+.|++.+...+.......+.+|+ +      |+...+++..
T Consensus        82 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~  133 (377)
T TIGR00890        82 FTFYAIA---------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIG  133 (377)
T ss_pred             HHHHHHH---------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHH
Confidence            9888876                     3577788889999999887777777777788764 3      7889999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          216 AINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       216 ~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +.++|..+++.+.+.+.+..||++.|++.++..++..+..+.
T Consensus       134 ~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       134 GYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             hcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887777777777789999999877766655554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.8e-15  Score=155.51  Aligned_cols=181  Identities=15%  Similarity=0.201  Sum_probs=164.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      +..|..++.+.+..|+....=+.....+|. +.+++|.|..++|..++.|..+..++.++-..+.||+ .          
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~----------   76 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-E----------   76 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c----------
Confidence            334567788888888888888888877776 5678999999999999999999999999999999998 9          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           ||++++....+++++.++.+++                     +++..++++|++.++..|.+.+...+..+|+.
T Consensus        77 -----Rr~lLl~~l~lFi~~n~l~alA---------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv  130 (394)
T COG2814          77 -----RRRLLLGLLALFIVSNLLSALA---------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLV  130 (394)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 9999999999999999999998                     46899999999999999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      |+++      |+++.++.+.+..++..+|..++.++.|.+|||..|++.+++.+++++..+...|
T Consensus       131 pp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         131 PPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             Cccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9987      9999999999999999999999999999999999999888887777777766666

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.76  E-value=3.3e-16  Score=168.37  Aligned_cols=147  Identities=11%  Similarity=0.124  Sum_probs=127.2

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588           70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR  149 (540)
Q Consensus        70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~  149 (540)
                      ++|++..+.+.+.+.+..++.++.+++|+++||+ |               ||+++.++.++..++.++...+..     
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r~~l~~~~~~~~~~~~~~~~~~~-----  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-V---------------FKWSIGIGMFLSSVISIVIPWAAG-----  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-C---------------cchhhHHHHHHHHHHHHHHHHHHH-----
Confidence            6889999999999999999999999999999998 9               999999999888888777654421     


Q ss_pred             CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588          150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV  229 (540)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~  229 (540)
                                    .+...+++.+++.|++.+...|....+.+|.+|+++      |+++.++++.+.++|..++|.+++
T Consensus       129 --------------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~  188 (465)
T TIGR00894       129 --------------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISG  188 (465)
T ss_pred             --------------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          124568889999999999999999999999999877      999999999999999999999999


Q ss_pred             hhhhc-cCcchhhhHhHHHHHHHHHHHHh
Q 041588          230 YIQEQ-KGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       230 ~l~~~-~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      ++.+. .||+..|++.++..++..+++..
T Consensus       189 ~l~~~~~gw~~~f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       189 WLCESWGGWPMIFYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             HHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence            99988 49999999887766555444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.76  E-value=6.6e-16  Score=163.83  Aligned_cols=182  Identities=7%  Similarity=-0.149  Sum_probs=123.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++...+++.+.++++.|+.+++|++..+.+.+.+.+.+...+++++.|+++||+ |              
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g--------------   74 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-G--------------   74 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            5678888888888888888999999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++++..+..++...+......+.                 .....+.+..+.++..+...+...+...++.++. 
T Consensus        75 -~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  135 (420)
T PRK09528         75 -LKKHLLWIISGLLVLFGPFFIYVFAPL-----------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-  135 (420)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-
Confidence             999998877665554432221100000                 0001112222223322322222222222332211 


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                         .++++..++......++|..++|.+++++.+ .+|+..|++.++..++++++.+..+
T Consensus       136 ---~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        136 ---SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             ---HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence               1125667788888889999999999999976 4899999887766666555554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.76  E-value=6.5e-16  Score=163.84  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=139.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +++......+..+...+.++... ++..++.+++|.+..+.+...+.+.++..++.+++|+++||+ |            
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g------------   81 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIF-YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-G------------   81 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence            33444555555555555555443 344456789999999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||+++.++.++..++.+...++                     .+...+++++++.|++.|...+...++..|.+|+
T Consensus        82 ---~r~~l~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~  137 (426)
T PRK12307         82 ---RKPLMMWSIVAYSVGTGLSGLA---------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK  137 (426)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH
Confidence               9999999999999998888776                     3577888999999999999899999999999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTA  246 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~  246 (540)
                      ++      |+++.+++..+.++|..+++.+.+++.+..||++.|++..+
T Consensus       138 ~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        138 HL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             hH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            76      88999999999999999999999999888999999987543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.76  E-value=1.7e-16  Score=170.75  Aligned_cols=176  Identities=13%  Similarity=0.027  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           42 SPFIIVNEVAERLAFFAIAV---NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~---~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      .+.++...++.....|....   .....+.+++|++..+.+++.+.+..++.++.+++|+++||+ |             
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g-------------   92 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-N-------------   92 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-C-------------
Confidence            34444444444444443322   223456789999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        ||+++.++.++..++...++.....                ...+...+++.+++.|++.+...|+..++++|++|++
T Consensus        93 --~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  154 (467)
T PRK09556         93 --TKQFLPFLLILSAICMLGFGASLGS----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR  154 (467)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence              9999999988887777766653110                0135778889999999999998999999999999998


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc---CcchhhhHhHHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK---GWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~---g~~~~f~i~~~~~~~~~i~~  255 (540)
                      +      |+.+++++..+.++|+.+++.+..++.+..   +|+..|.+.++..++..++.
T Consensus       155 ~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~  208 (467)
T PRK09556        155 K------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG  208 (467)
T ss_pred             c------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence            7      999999999999999999999887776643   58888877666554443333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.76  E-value=1.3e-15  Score=160.30  Aligned_cols=162  Identities=13%  Similarity=0.161  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT  124 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~  124 (540)
                      ..+..+..+..++.+.+.+|. +.+++|+|..+.+++.+.+..+..++.++.|+++||+ |               ||++
T Consensus        14 ~~~~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G---------------~r~~   76 (393)
T PRK09705         14 LVLIGLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-S---------------ERRS   76 (393)
T ss_pred             HHHHHHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-C---------------chHH
Confidence            334444445555666666665 5678999999999999999999999999999999998 9               9999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      +..+..++.++.++.+++                     ++...+++++++.|+|.+...+...+++.|++| ++     
T Consensus        77 l~~~~~l~~~~~~~~~~a---------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~-----  129 (393)
T PRK09705         77 VAISLLLIAVGALMRELY---------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR-----  129 (393)
T ss_pred             HHHHHHHHHHHHHHHHHC---------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc-----
Confidence            999999999999999887                     246678899999999999988888899999887 44     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHH
Q 041588          205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICS  251 (540)
Q Consensus       205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~  251 (540)
                       |+.+.+.+..+.++|..+++.+++++.++. +|+..+.+.++..++.
T Consensus       130 -~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        130 -TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             889999999999999999999999988875 7998876654444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.76  E-value=2.5e-15  Score=160.12  Aligned_cols=168  Identities=14%  Similarity=0.243  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           47 VNEVAERLAFFAIAVNMTAYLVREMH---QSLPTAGTHVTDW---IGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        47 ~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~a~~~~~~~---~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      +..+++.+-+.. .+.+..++.++++   .+..+.+.....+   .++..++.+++|+++||+ |               
T Consensus        29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-G---------------   91 (432)
T PRK10406         29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-G---------------   91 (432)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence            345555555444 4556667888874   4555433333333   444448899999999998 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      |||++.++.+++.++.++.+++.+....             .......+++.|+++|+|.|+..|...++++|.+|+++ 
T Consensus        92 rr~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-  157 (432)
T PRK10406         92 RKKSMLISVCMMCFGSLVIACLPGYETI-------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-  157 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhH-------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-
Confidence            9999999999999999988776311000             00123468889999999999999999999999999877 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHHH
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTIC  250 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~~  250 (540)
                           |+.+.++.+.+.+.|..+++.+...+.        +..|||..|++.++..++
T Consensus       158 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        158 -----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence                 888888888888888888877655543        257999999876665443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.75  E-value=2.8e-15  Score=157.02  Aligned_cols=344  Identities=13%  Similarity=0.048  Sum_probs=207.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..+.+.+..++...++-...+++|.|+. ++|+|..+.+.+.+.+.....++.++.|.++||+ |               
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~---------------   67 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-N---------------   67 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence            4444556667777777777889999995 6899999999999999999999999999999998 8               


Q ss_pred             chHHHH----HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          121 RFRTLV----VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       121 r~~~i~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                      |++...    ++..+..+  .+...+                     ++.+.+++.+++.+.+.+...|...++..+. +
T Consensus        68 ~~~~~~~~~~~~~~l~~~--~~~~~~---------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~  123 (382)
T TIGR00902        68 HIIIALRLLALASAIFAA--AFSAGA---------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q  123 (382)
T ss_pred             cHHHHHHHHHHHHHHHHH--HHHHhh---------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H
Confidence            754332    22222221  111112                     2467777888888888888778777765432 1


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHH
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFV  276 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~  276 (540)
                       +      +|+..++......++|..++|.+++++.++.||+..|++..+..++.++ .....++.   +|+++.     
T Consensus       124 -~------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~-----  187 (382)
T TIGR00902       124 -K------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI-----  187 (382)
T ss_pred             -H------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-----
Confidence             2      2788899999999999999999999999999999999876554332222 22222211   111000     


Q ss_pred             HHHHHHHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccCcccccccccccccchhHHHHHHHHH
Q 041588          277 QVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIR  356 (540)
Q Consensus       277 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~  356 (540)
                                      ++.+                 . ... ..+.+                       .-..|++  
T Consensus       188 ----------------~~~~-----------------~-~~~-~~~~~-----------------------~l~~~~~--  207 (382)
T TIGR00902       188 ----------------PEDE-----------------S-QGD-SAFIA-----------------------LLKNPMN--  207 (382)
T ss_pred             ----------------cccc-----------------c-ccc-hhHHH-----------------------HHcChHH--
Confidence                            0000                 0 000 00000                       0001122  


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC-c---
Q 041588          357 ILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ-C---  432 (540)
Q Consensus       357 ~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~-l---  432 (540)
                       +.+.+...+......+..+++..+-.  |....   ....+.+..+..+..++..++.+++.    +|.+ .++ +   
T Consensus       208 -~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s---~~~~g~l~~~~~~~~i~~~~~~~~l~----~r~g-~~~~l~~~  276 (382)
T TIGR00902       208 -LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS---ASATGLLWGIGVLAEIIIFAFSNKLF----QNCS-ARDLLLIS  276 (382)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC---HhHHHHHHHHHHHHHHHHHHHhHHHH----hhCC-HHHHHHHH
Confidence             22223333344555555554433222  21111   11123344455566666666666654    3332 112 1   


Q ss_pred             ----ccc----cc---------hhHHHHHHHHHHhhhhHHHHHhhhccccchhhHhHHH-HHhHHHHHHHHHHHHHHHhh
Q 041588          433 ----DVK----TI---------LSHLWHSAEVFTYVGQLEFFYNEATDGTRSISTAIFL-SEIGLGSCLSNALVKIIERA  494 (540)
Q Consensus       433 ----~~~----~~---------~s~~~~~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~-~~~~ig~~l~~~l~~~~~~~  494 (540)
                          ..+    ..         ....+.+...+..+....++.+. |++.++.++|+++ ...++|..+++.+.+.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~  355 (382)
T TIGR00902       277 AIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT  355 (382)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                000    00         11111177777888888889888 9999999999986 57789999999998887642


Q ss_pred             cCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHH
Q 041588          495 TGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFV  529 (540)
Q Consensus       495 ~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~  529 (540)
                      .              + . ..|++.+++.+++.++
T Consensus       356 ~--------------g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       356 L--------------G-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             c--------------c-H-HHHHHHHHHHHHHHHH
Confidence            2              1 1 4688888887766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=99.75  E-value=6.2e-15  Score=155.53  Aligned_cols=174  Identities=15%  Similarity=0.116  Sum_probs=138.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      -||.+....+..++...+.+....+++.|+ +++|.+..+++...+.+.....++.+++|+++||+ |            
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g------------   76 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-G------------   76 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-C------------
Confidence            346777788888888888888888888888 56899999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         |||++..+..+..++.+++......                 ..+...+++.+.+.|+|.+...+...+...+.+|+
T Consensus        77 ---~k~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~  136 (402)
T TIGR00897        77 ---PLKTMMIGLLLWCVGHAAFIVFGLG-----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ  136 (402)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHhcc-----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH
Confidence               9999999999888876655332110                 02355667788888888877666677777888887


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGA-IFGITVLVYIQEQKGWSVGFGIPTAFTICS  251 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~-~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~  251 (540)
                      ++      |+++.++++.+.++|. .++|.+++++.+..||+..++.......++
T Consensus       137 ~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  185 (402)
T TIGR00897       137 DN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG  185 (402)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            66      9999999999999996 589999999988888766665544333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.75  E-value=8.8e-16  Score=166.54  Aligned_cols=180  Identities=16%  Similarity=0.147  Sum_probs=146.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      |..+..+++..+...+-.-.+...+|.. .+++|.+..+.+++.+.+..+..++.+++|+++||+ |             
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-G-------------   69 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-G-------------   69 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence            3444555666666666555566666665 578999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        ||++++++.++..++.++++.+                     .+.+.+++++.++|+|.++..+...+.+.+.++++
T Consensus        70 --rk~~l~~~~~~~~~~~~~~~~a---------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~  126 (495)
T PRK14995         70 --FKRLLMLGGTLFGLASLAAAFS---------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEE  126 (495)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence              9999999999999999998876                     35788899999999999988888777777777432


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      +     +|+.+++++....++|..+||.+++++.++.||++.|++...+.++.+++.....|+
T Consensus       127 ~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        127 K-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2     289999999999999999999999999999999999998766665555554444443

>PRK03699 putative transporter; Provisional

Probab=99.74  E-value=5.8e-15  Score=155.29  Aligned_cols=174  Identities=9%  Similarity=0.046  Sum_probs=142.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      +++|..+...+..++.....+.+...+|. +.+++|+|..+.+.+.+.+.++..++.+++|+++||+ |           
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g-----------   70 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-P-----------   70 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-----------
Confidence            44566677767777776766666666666 4578999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          |||++.++.++..++.+++.++                     .+...+++.+.+.|++.|...+...+.+.|.+|
T Consensus        71 ----~r~~~~~~~~~~~i~~~l~~~~---------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~  125 (394)
T PRK03699         71 ----LKRQLIFGFALMILAVAGLMFS---------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYE  125 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHc---------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcc
Confidence                9999999998888888887765                     246678888999999999888888899999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHHHHHHHHH
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~~~~~~i~  254 (540)
                      +++      |+...+..+...++|+.++|.+.+++.+ ..||++.|.+.++..++..++
T Consensus       126 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        126 GKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             cch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            765      8888888888889999999999888754 579999998766665544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.74  E-value=1.3e-15  Score=164.24  Aligned_cols=175  Identities=15%  Similarity=0.212  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      ...+++..+...+....+...+|. +.+++|.+..+.+++.+.+..+..++.+++|+++||+ |               |
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~   66 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-G---------------T   66 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-C---------------c
Confidence            344455555555555555555554 5578999999999999999999999999999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |++++++.++..++.+++..+                     .+...+++++++.|++.+...+...+++.|.+|+++  
T Consensus        67 r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~--  123 (485)
T TIGR00711        67 RRLFLISTFAFTLGSLLCGVA---------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK--  123 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc---------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH--
Confidence            999999999999998887765                     346778899999999999999999999999998776  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                          |+.++++++.+.++|..++|.+++++.++.||++.|++.+...+++.+......+
T Consensus       124 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       124 ----RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence                8999999999999999999999999999999999999877666555555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.74  E-value=5.9e-15  Score=155.33  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=135.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.+....++..++...+...++.. .+++|.+..+.+++.+.+...+.++.+++|+++||+ |              
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-g--------------   66 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-P--------------   66 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-C--------------
Confidence            456777788888887666555555544 578999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++++.++..++.+.+....                     +   .++.++++|++.+...|+..+++.|.+|+++
T Consensus        67 -rr~vl~~~~~~~~~~~~~~~~~~---------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~  121 (393)
T PRK11195         67 -KGRVMFIANGIKLLGCLLMLFGI---------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK  121 (393)
T ss_pred             -CchhhHHHHHHHHHHHHHHHHHH---------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence             99999999999888877765541                     1   2567889999999999999999999999876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI  252 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~  252 (540)
                            |+++.++.....++|..+||.++|++.+. .|+..+.+.+...+++.
T Consensus       122 ------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        122 ------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence                  99999999999999999999999999885 36666665554444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.74  E-value=3.2e-15  Score=167.28  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=128.9

Q ss_pred             HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588           60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL  139 (540)
Q Consensus        60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l  139 (540)
                      ...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |               ||++++++.++.+++.++.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-G---------------RR~~lii~lil~~i~~ll~  249 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-G---------------RKQCLLICLSVNGFFAFFS  249 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHHHHH
Confidence            34445566778999999999999999999999999999999998 9               9999999999888888887


Q ss_pred             HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                      +++                     .+...+++++++.|+|.|+..+...++++|.+|++.      |+..+++...+..+
T Consensus       250 afa---------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~i  302 (742)
T TIGR01299       250 SFV---------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMI  302 (742)
T ss_pred             HHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            766                     246788899999999999999999999999999876      89999999999999


Q ss_pred             HHHHHHHHHHhhhhc-------------cCcchhhhHhHHHHHHHHHHHHh
Q 041588          220 GAIFGITVLVYIQEQ-------------KGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       220 G~~i~p~v~~~l~~~-------------~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      |+++++.++.++...             .+|++.|++.++..++++++.++
T Consensus       303 G~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       303 GGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877665543             35888887776665555544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.1e-16  Score=160.56  Aligned_cols=172  Identities=13%  Similarity=0.083  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAIAVN---MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~---l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++...++...+||.+.-+   ...++.++.++|.+|.|.+.+.+.+.+.++-.+.|.+|||. +              
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-n--------------   92 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-N--------------   92 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-C--------------
Confidence            66778888888999988544   34678889999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       .|+.+.+++++..+..++++++.                     +...+.+..++.|..+|.-.|+....++.+|++++
T Consensus        93 -pr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e  150 (448)
T COG2271          93 -PRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE  150 (448)
T ss_pred             -CceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence             99999999999999999999873                     57778888889999999999999999999999998


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVL--VYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~--~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                            ||+..++.+.+-|+|+++.|.+.  +++.++.+|+.+|++++++.++..++.+.
T Consensus       151 ------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         151 ------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             ------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence                  99999999999999999999999  99999999999999988876554444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.74  E-value=8.1e-15  Score=153.93  Aligned_cols=172  Identities=11%  Similarity=0.098  Sum_probs=138.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +|..+.+....++.....+...+.+|.+ .+++|.|..+.+...+.+.....++.++.|+++||+ |             
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g-------------   71 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-G-------------   71 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C-------------
Confidence            4555555555556666655555555554 578999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        |||++.++.++..++.+.....                     .+...+++.+++.|++.+...+....+..|.++++
T Consensus        72 --rr~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  128 (394)
T PRK11652         72 --RRPVILVGMSIFILGTLVALFA---------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT  128 (394)
T ss_pred             --ChHHHHHHHHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence              9999999998888888877665                     24677888899999998877777777888888765


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~  254 (540)
                      +      ++...+++..+..+|..++|.+++++.+..||+..|++.++..++..++
T Consensus       129 ~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        129 Q------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            5      7888888999999999999999999999899999998876655544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.73  E-value=7.6e-16  Score=159.27  Aligned_cols=152  Identities=15%  Similarity=0.091  Sum_probs=131.2

Q ss_pred             HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588           64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG  143 (540)
Q Consensus        64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~  143 (540)
                      ..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |               ||++++++.++..++.+++..+ 
T Consensus        18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r~~~~~~~~~~~~~~~~~~~~-   80 (379)
T TIGR00881        18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-N---------------PRVFLPIGLILCAIVNLFFGFS-   80 (379)
T ss_pred             hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-C---------------CeehhHHHHHHHHHHHHHHHHh-
Confidence            3467788999999999999999999999999999999998 9               9999999999999998888876 


Q ss_pred             ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHH
Q 041588          144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIF  223 (540)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i  223 (540)
                                          .+.+.+++.+++.|++.+...+...++.+|.+|+++      |+.++++.+.+.++|..+
T Consensus        81 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~  134 (379)
T TIGR00881        81 --------------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGL  134 (379)
T ss_pred             --------------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHH
Confidence                                246778889999999999999999999999999876      899999999999999999


Q ss_pred             HH-HHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          224 GI-TVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       224 ~p-~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +| .+++.+.+..+|++.|++.+++.++..++.+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       135 LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence            99 567777778899999988776655544444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.73  E-value=1.8e-15  Score=161.35  Aligned_cols=145  Identities=15%  Similarity=0.280  Sum_probs=122.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588           73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA  152 (540)
Q Consensus        73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  152 (540)
                      .+..+.+++.+.+.++..++.+++|+++||+ |               ||++++++.++..++.++......        
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g---------------rr~~~~~~~~~~~~~~~~~~~~~~--------  123 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-G---------------RKKSLLIIALLFVIGAILMGLAAF--------  123 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-h---------------hHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence            3388999999999999999999999999998 9               999999999999998888866521        


Q ss_pred             CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH---H
Q 041588          153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL---V  229 (540)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~---~  229 (540)
                                ..+.+.+++++++.|+|.+...+...++++|.+|+++      |+.++++++.+.++|..+++.++   +
T Consensus       124 ----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~  187 (481)
T TIGR00879       124 ----------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKV  187 (481)
T ss_pred             ----------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence                      1234578889999999999999999999999999887      89999999999999999999998   7


Q ss_pred             hhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          230 YIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       230 ~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      .+.+..||++.|++.++..++.++..++
T Consensus       188 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~  215 (481)
T TIGR00879       188 SLNNTLGWRIPLGLQLIPAGLLFLGLFF  215 (481)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            7667789999999866655555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.73  E-value=2.6e-15  Score=156.35  Aligned_cols=157  Identities=10%  Similarity=0.114  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588           58 AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV  137 (540)
Q Consensus        58 ~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~  137 (540)
                      ...+.+|.+.. ++|++..+.+...+.+..+..++.+++|+++||+ |               ||+++..+.++..++.+
T Consensus         9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~~~~~~~~~~~~~i~~~   71 (377)
T PRK11102          9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-G---------------RKPVILGGTLVFALAAV   71 (377)
T ss_pred             HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-C---------------ChHHHHHHHHHHHHHHH
Confidence            34466777764 6999999999999999999999999999999998 9               99999999999999888


Q ss_pred             HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588          138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI  217 (540)
Q Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  217 (540)
                      ++...                     .+...+++.+++.|++.+...+...++..|.+|+++      |++.+++.+...
T Consensus        72 ~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  124 (377)
T PRK11102         72 ACALA---------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVM  124 (377)
T ss_pred             HHHHH---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHH
Confidence            88766                     245677888899999999888889999999998776      899999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          218 NMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       218 ~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ++|..++|.+++++.+..||++.|++.++..++..+.....
T Consensus       125 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102        125 TIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998999999988777666555544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.6e-17  Score=170.18  Aligned_cols=180  Identities=18%  Similarity=0.209  Sum_probs=158.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      ..++.+..++++++.++.--|.+..-+ .-..+.+|.+++..|++.+.+.....++.|+.|+++||+ .           
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-N-----------   96 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-N-----------   96 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-C-----------
Confidence            344667778888888888888776643 335678999999999999999999999999999999999 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          |++++.+|..++.++.+..+++                     ...+.+.+.|.+.|+|.+.+.|..+++++|.||
T Consensus        97 ----R~~v~~vG~~iW~~Av~~~~fs---------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~  151 (493)
T KOG1330|consen   97 ----RKRVIAVGIFIWTLAVFASGFS---------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFP  151 (493)
T ss_pred             ----cceEEeeHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCc
Confidence                9999999999999999999887                     368899999999999999999999999999999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++.      |++.++++|+++++|.++|.++++++.+..+ ||++|.+.+++.++..++..+..+
T Consensus       152 ~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  152 DDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             chh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            987      9999999999999999999999999998887 999999988887666555544443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.73  E-value=6.2e-15  Score=159.09  Aligned_cols=174  Identities=10%  Similarity=0.062  Sum_probs=130.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      ++.++......++.....+...+.++ ++.+++|++..+.+.+.+.+..++.++.+++|+++||+ |             
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G-------------   99 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-G-------------   99 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence            34444444455555555555544444 56789999999999998888889999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        ||+++..+.++..++.++.+.+.                     +...+++.+++.|++.+...+ ....++|.+|++
T Consensus       100 --~r~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~  155 (476)
T PLN00028        100 --PRYGSAFLLMLTAPAVFCMSLVS---------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK  155 (476)
T ss_pred             --ChHHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh
Confidence              99999999988888888777662                     356677788889988876543 445678999887


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh----h-----ccCcchhhhHhHHHHHHHHHHHHh
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ----E-----QKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~----~-----~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +      |+.+.++.+...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       156 ~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        156 I------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             h------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6      899999988878888887776665442    2     248999999877766555444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.72  E-value=5.4e-15  Score=160.06  Aligned_cols=167  Identities=16%  Similarity=0.209  Sum_probs=141.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      .+|+.+..+.+..++..+.++.+...+ .++.+++|++..+++.+.+.+.++..++.+++|+++||+ |           
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g-----------   83 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-G-----------   83 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence            345566666666666666666555554 456688999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          ||++++++.++..++.+++.+.                     .+...+++++++.|++.++..+...++..|.+|
T Consensus        84 ----~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  138 (496)
T PRK03893         84 ----RRLAMVISIVLFSVGTLACGFA---------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWP  138 (496)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                9999999999999988888876                     246778889999999999989999999999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF  247 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~  247 (540)
                      +++      |+..+++++.+.++|..++|.+.+++.+..||++.|++.++.
T Consensus       139 ~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        139 KHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            876      889999999999999999999999999999999999864443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.72  E-value=2.5e-15  Score=161.24  Aligned_cols=150  Identities=13%  Similarity=0.034  Sum_probs=122.6

Q ss_pred             HhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhccc
Q 041588           66 YLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSL  145 (540)
Q Consensus        66 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~  145 (540)
                      .+.+++|.+..+++.+.+.+.....++.+++|+++||+ |               ||++++.+.++..++.++++.+.  
T Consensus        44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g---------------~r~~l~~~~~~~~~~~~~~~~~~--  105 (455)
T TIGR00892        44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-G---------------CRPVVIAGGLLASLGMILASFSS--  105 (455)
T ss_pred             HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-C---------------chHHHHhhHHHHHHHHHHHHHhh--
Confidence            34578999999999999999999999999999999998 9               99999999988888888877652  


Q ss_pred             CCCCCCCCCCCCCccCCCchhHHHHH-HHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHH
Q 041588          146 DSLRPPACKERPCVEVNGGQNGFLLC-ALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFG  224 (540)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  224 (540)
                                         +...+++ .+++.|++.+...+...++..+.++ ++      |+.+.++.+.+.++|+.++
T Consensus       106 -------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~  159 (455)
T TIGR00892       106 -------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTL  159 (455)
T ss_pred             -------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHH
Confidence                               3444443 4577888888765556677788885 33      8999999999999999999


Q ss_pred             HHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          225 ITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       225 p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      |.+++++.+..||++.|++.+++.+++.+..++.+
T Consensus       160 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       160 APLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999998887766655544443

>PRK09952 shikimate transporter; Provisional

Probab=99.72  E-value=2.2e-14  Score=153.12  Aligned_cols=175  Identities=13%  Similarity=0.139  Sum_probs=124.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREM--HQSLPTAGTHV-----TDWIGAAYVLTILGAFLADAYLGQPALK  110 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l--g~s~~~a~~~~-----~~~~~~~~~~~~~gG~laD~~~G~~~~~  110 (540)
                      ++|..+..++..+++.+-+..+....+.++.+++  +.+... +...     ++..+...++.++.|+++||+ |     
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-G-----   92 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-G-----   92 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-c-----
Confidence            3455566666667776666555445555666655  566653 3332     223334556777889999998 9     


Q ss_pred             hhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588          111 HVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF  190 (540)
Q Consensus       111 ~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~  190 (540)
                                ||+++..+.+++.++.++.+++.+....             .-.....+++.|.++|++.|+..+....+
T Consensus        93 ----------rr~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~  149 (438)
T PRK09952         93 ----------RKRMLMLTVWMMGIATALIGLLPSFSTI-------------GWWAPVLLVTLRAIQGFAVGGEWGGAALL  149 (438)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhcCCcHHHH-------------HHHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence                      9999999999999999988876321000             00012257788999999999999999999


Q ss_pred             hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHH
Q 041588          191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFT  248 (540)
Q Consensus       191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~  248 (540)
                      ..|.+|+++      |+...+....+..+|..++..+..++.        +..|||..|++.++..
T Consensus       150 ~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        150 AVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             HHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence            999999887      888888888888888888877766654        2579999998766553

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.71  E-value=1.6e-14  Score=153.05  Aligned_cols=148  Identities=14%  Similarity=0.134  Sum_probs=128.0

Q ss_pred             hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccC
Q 041588           67 LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLD  146 (540)
Q Consensus        67 l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~  146 (540)
                      +.+++|.+..+++..++++..+..++.+++|+++||+ |               ||++++.+..+..++.++...+    
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G---------------rr~~l~~~~~~~~~~~~~~~~a----  101 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-G---------------RRPVLITGALIFTLACAATLFT----  101 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-C---------------chHHHHHHHHHHHHHHHHHHHc----
Confidence            5678999999999999999999999999999999998 9               9999999999999988887766    


Q ss_pred             CCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 041588          147 SLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGIT  226 (540)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  226 (540)
                                       .+...++++++++|++.+...+...+...|.+|+++      +.+.+++++.+.++|..++|.
T Consensus       102 -----------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~  158 (413)
T PRK15403        102 -----------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPL  158 (413)
T ss_pred             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             357788999999999987666666777889998876      788899999999999999999


Q ss_pred             HHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          227 VLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       227 v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +++++.+..||++.|++.++..+++.+..+.
T Consensus       159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998889999999877776666554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.70  E-value=1.7e-14  Score=155.43  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=123.0

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041588           71 MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRP  150 (540)
Q Consensus        71 lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~  150 (540)
                      +|.+..+.+.+.+.+.++..++++++|+++||+ |               |||+++++.+++.++.+..++....-....
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-G---------------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~  113 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------RRDSLKIAAVLFFISALGSAWPEFGFTSIG  113 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            388899999999999999999999999999998 9               999999999998888777765321100000


Q ss_pred             CCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 041588          151 PACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVY  230 (540)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~  230 (540)
                               .++......++++|++.|++.|+..+...++++|++|+++      |+.+++++..+..+|.++++.+++.
T Consensus       114 ---------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~  178 (479)
T PRK10077        114 ---------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYF  178 (479)
T ss_pred             ---------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0011235667899999999999999999999999999877      9999999999999999998877665


Q ss_pred             hh--------hccCcchhhhHhHHHHHHHHHHHH
Q 041588          231 IQ--------EQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       231 l~--------~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +.        +..|||+.|++.++..++..++.+
T Consensus       179 ~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~  212 (479)
T PRK10077        179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLY  212 (479)
T ss_pred             HhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence            43        356899999987776666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.70  E-value=1e-14  Score=155.64  Aligned_cols=157  Identities=13%  Similarity=0.014  Sum_probs=126.2

Q ss_pred             HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588           64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG  143 (540)
Q Consensus        64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~  143 (540)
                      ..++.+ .|++..+.+++.+.+..+..++.+++|+++||+ |               ||+++.++.++..++.+++....
T Consensus        50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g---------------~~~~~~~~~~~~~~~~~~~~~~~  112 (438)
T TIGR00712        50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-N---------------PRVFLPAGLILSAAVMLLMGFVP  112 (438)
T ss_pred             hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-C---------------CceehHHHHHHHHHHHHHHhccc
Confidence            345555 599999999999999999999999999999998 9               99999999888888877765542


Q ss_pred             ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHH
Q 041588          144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIF  223 (540)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i  223 (540)
                      ..                 ..+...+++.+++.+++.|...+.....+.|.+|+++      |++++++++.+.++|+.+
T Consensus       113 ~~-----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~  169 (438)
T TIGR00712       113 WA-----------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGI  169 (438)
T ss_pred             cc-----------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHH
Confidence            10                 0235566778888999999888888888999999887      999999999999999999


Q ss_pred             HHHHHHhh-hhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          224 GITVLVYI-QEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       224 ~p~v~~~l-~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      +|.+.+.+ .+..||+..|++.++..++..++.++..+
T Consensus       170 ~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       170 PPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            98887754 44568999999877776665544444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=99.70  E-value=6.6e-14  Score=147.37  Aligned_cols=170  Identities=15%  Similarity=0.209  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           45 IIVNEVAERLAFFAIAVNMTAY--LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~y--l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      ++........++++...++|.+  +.+++|.+..+.+...+++.....++.+++|+++||+ |               ||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r   71 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-G---------------RK   71 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-C---------------Cc
Confidence            4444444555555555666655  6688999999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +++..+..+..++.++...+                     .+...+++++++.|++.+...+...++..|.+++++   
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---  127 (401)
T PRK11043         72 PVLLAGLSLFALGSLGMLWV---------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK---  127 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH---
Confidence            99999998888888777765                     246677888899999888777777788899998765   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                         +...++..+...++|+.++|.+++++.+..||+..|++..+..++..+..+.
T Consensus       128 ---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        128 ---ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence               6777888888889999999999999999999999998877766655554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.69  E-value=7.2e-14  Score=146.62  Aligned_cols=171  Identities=10%  Similarity=0.067  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH
Q 041588           44 FIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR  123 (540)
Q Consensus        44 ~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~  123 (540)
                      ...+..+..-.+.....+.+|.+ .+++|.+..+.+...+.+.....++.++.|+++||+ |               ||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g---------------~r~   69 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-G---------------RKP   69 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-C---------------ChH
Confidence            34445555555655555666654 567999999999999999999999999999999998 9               999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588          124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA  203 (540)
Q Consensus       124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~  203 (540)
                      .++++.++..++.+++..+                     .+...+++++++.|++.+...+...++..|.+|+++    
T Consensus        70 ~l~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~----  124 (392)
T PRK10473         70 VAIPGAALFIIASLLCSLA---------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR----  124 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH----
Confidence            9999999988888887765                     235667788889999988888888899999998876    


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                        |++..++.+...++|..++|.+++++.+..||+..|++.++..++..++....
T Consensus       125 --r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  177 (392)
T PRK10473        125 --RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI  177 (392)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence              89999999999999999999999998888899999988777665555544333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.69  E-value=4.7e-14  Score=148.37  Aligned_cols=180  Identities=7%  Similarity=-0.100  Sum_probs=133.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+|.+....++...++..+.++++.|+++++|++..+.+++.+.+.+...++.+++|+++||+ |              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-g--------------   66 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-G--------------   66 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            4568888888999999999999999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||.++.+....+++...+......+..             .......++++.++.+++.+...+...++..|.-+  +
T Consensus        67 -rr~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~  130 (396)
T TIGR00882        67 -LKKHLLWIISGLLVLFAPFFIYVFGPLL-------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N  130 (396)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h
Confidence             9999998876665544332211100000             00112234555667788888777777766655321  1


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                            ++..++......++|..++|.+++.+.+ .||+..|++.++..++..++.+.
T Consensus       131 ------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       131 ------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             ------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence                  3446677778889999999999998865 59999998877766655544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.69  E-value=5.5e-14  Score=147.25  Aligned_cols=156  Identities=13%  Similarity=0.053  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch----HH
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF----RT  124 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~----~~  124 (540)
                      .+....++..+.+++|.|+. ++|.|..+.|.+.+++.....++.+++|.++||+ |               |+    +.
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g---------------~~~~~~~~   75 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-S---------------QLIPALRL   75 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-c---------------chHHHHHH
Confidence            44455666777889999995 5899999999999999999999999999999998 9               73    33


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      +.++..+..+   .+...                    .++.+.+++.+.+.+++.+...|...++..|..  ++     
T Consensus        76 ~~~~~~~~~~---~~~~~--------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~-----  125 (382)
T PRK11128         76 LALLTLLFAV---AFWFG--------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ-----  125 (382)
T ss_pred             HHHHHHHHHH---HHHHh--------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh-----
Confidence            3322222111   11111                    134677778888899988888888887777652  22     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588          205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI  252 (540)
Q Consensus       205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~  252 (540)
                       |+..++......++|..++|.+++++.+++||+..|++.++..++.+
T Consensus       126 -~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        126 -IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             -ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence             67778888888899999999999999999999999987665544443

>TIGR00898 2A0119 cation transport protein

Probab=99.68  E-value=2.1e-14  Score=155.98  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=126.3

Q ss_pred             HhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 041588           66 YLVREMHQS---LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVS  142 (540)
Q Consensus        66 yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~  142 (540)
                      -+.+++|++   ..+.++..+++.++..++.++.|+++||+ |               ||++++++.++..++.++.+++
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-G---------------rr~~~~~~~~~~~i~~~~~~~~  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-G---------------RKKVLLLSTLVTAVSGVLTAFS  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-c---------------chHHHHHHHHHHHHHHHHHHHc
Confidence            356789998   88999999999999999999999999998 9               9999999999988888887765


Q ss_pred             cccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588          143 GSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI  222 (540)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  222 (540)
                                           .+...+++.+++.|++.++..+...+++.|.+|+++      |+...+++..+..+|.+
T Consensus       178 ---------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~  230 (505)
T TIGR00898       178 ---------------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLV  230 (505)
T ss_pred             ---------------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHH
Confidence                                 357788999999999999999999999999999887      88888888888999999


Q ss_pred             HHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          223 FGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       223 i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ++|.++..+.+   |++.|++.++..++..+..++.
T Consensus       231 ~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       231 LLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence            99988776654   9999988777666655555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.68  E-value=1.2e-13  Score=147.21  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=121.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH-HHHHH-HHH----HHHHHHHHHHhhhhcCCCcchhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTH-VTDWI-GAA----YVLTILGAFLADAYLGQPALKHV  112 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~-~~~~~-~~~----~~~~~~gG~laD~~~G~~~~~~~  112 (540)
                      ++....+++..+++.+-...+.... ..+.++++.+..+.+.. .+... ...    .++.++.|+++||+ |       
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G-------   84 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-G-------   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-c-------
Confidence            3444555555555555555444444 46777898877765433 22221 122    35678899999998 9       


Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588          113 HAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA  192 (540)
Q Consensus       113 ~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~  192 (540)
                              |||+++.+..++.++.++++++.+....             .......++++|++.|++.|...++...+.+
T Consensus        85 --------rr~~l~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  143 (434)
T PRK15075         85 --------RRKGLIVTLSIMASGTLLIAFVPGYATI-------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLA  143 (434)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHhCCcHHHH-------------HHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence                    9999999999999999988876311000             0000124678899999999999898899999


Q ss_pred             ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--------hhccCcchhhhHhHH
Q 041588          193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI--------QEQKGWSVGFGIPTA  246 (540)
Q Consensus       193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l--------~~~~g~~~~f~i~~~  246 (540)
                      |.+|+++      |+...+++..+.++|..+++.+++.+        .+..||++.|++.++
T Consensus       144 e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        144 EIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             hhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999887      99999998888888888777776665        246799999987543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.67  E-value=6.9e-14  Score=166.59  Aligned_cols=155  Identities=10%  Similarity=0.062  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP--TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~--~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +.+...++..++..+...+....+..++...++.+..  ..+++.+++.+...++.+++|+++||+ |            
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-g------------   75 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-S------------   75 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-c------------
Confidence            4556666677777766666656666666666666544  367888889999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||++++++.++.+++.++..+....                  .+...+++.+++.|++.+...++..++++|.+|+
T Consensus        76 ---rk~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  134 (1146)
T PRK08633         76 ---KNRVIRIVKLFEVGLTLLIVLAYYL------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK  134 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHH------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence               9999999887766665554443210                  2467888999999999999999999999999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                      ++      |+.+++++..+.++|.++||.+++++.+.
T Consensus       135 ~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        135 EN------LSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77      99999999999999999999999998775

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.67  E-value=2.4e-13  Score=147.33  Aligned_cols=179  Identities=18%  Similarity=0.195  Sum_probs=139.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKH  111 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~  111 (540)
                      +.++|+.+.++...+......+.....+|.|+.+ .|.+..+.+....+.  ..+++.++.|.++||+    +|      
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~--~~~~~~~l~gpl~Dr~~~~~~G------   78 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG--QAYVFKFLWSPLMDRYTPPFLG------   78 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHcccccCCC------
Confidence            3445667778888888888888888889999864 689998888863333  3347899999999996    26      


Q ss_pred             hhhhhhcccchHH-HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588          112 VHAIFKLQGRFRT-LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF  190 (540)
Q Consensus       112 ~~~~~~~~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~  190 (540)
                               |||. ++++.+...++...+++..  |                ..+.+.+.+.+++.+++.+...+...++
T Consensus        79 ---------rrr~~ll~~~i~~~~~~~~~a~~~--~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~  131 (491)
T PRK11010         79 ---------RRRGWLLATQLLLLVAIAAMGFLE--P----------------GTQLRWLAALAVVIAFCSASQDIVFDAW  131 (491)
T ss_pred             ---------CchHHHHHHHHHHHHHHHHHHHcC--C----------------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     8875 5566667777777766541  1                1346677777888898888888999999


Q ss_pred             hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHHHHHHHHHHH
Q 041588          191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      ..|.+|+++      |+.+.++...+.++|..+++.+++++.+ ..||+..|++.++..++..+..+
T Consensus       132 ~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        132 KTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999776      8999999999999999999999999988 46999999987776665544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.67  E-value=2.6e-13  Score=147.05  Aligned_cols=174  Identities=18%  Similarity=0.151  Sum_probs=125.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHH--HHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT----AGT--HVTDWIGAAYVLTILGAFLADAYLGQPALKHVH  113 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~----a~~--~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~  113 (540)
                      +......+..+++.+-+.. ..+...++.++++.+...    .+.  ..++...+..++.+++|+++||+ |        
T Consensus        16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G--------   85 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-G--------   85 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--------
Confidence            4445555666776655543 445556777777643322    111  23556677889999999999998 9        


Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588          114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD  193 (540)
Q Consensus       114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d  193 (540)
                             ||+++.++.+++.++.++.+++.+...+.             -.....+++.|+++|+|.|+..++..++++|
T Consensus        86 -------rr~~l~~~~~l~~i~~~~~a~~~~~~~~g-------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e  145 (490)
T PRK10642         86 -------RQKILAITIVIMSISTFCIGLIPSYATIG-------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAE  145 (490)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence                   99999999999999999988873210000             0001247889999999999999999999999


Q ss_pred             cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHH
Q 041588          194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTI  249 (540)
Q Consensus       194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~  249 (540)
                      .+|+++      |+...++...+.++|..+++.+...+.        ...|||+.|++.++..+
T Consensus       146 ~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        146 YSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             hCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            999887      888888888888888887776654432        25799999988655433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.66  E-value=4.7e-14  Score=167.96  Aligned_cols=136  Identities=11%  Similarity=0.099  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHH--HHHHHHHHHHHhcccCCCCCCCCC
Q 041588           77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC--IYSVGMVLLTVSGSLDSLRPPACK  154 (540)
Q Consensus        77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~  154 (540)
                      ..++..+++.+...++.+++|+++||+ |               ||+++.....  +...+..++....           
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~-~---------------rk~~~~~~~~~~~~~~~~~~~~~~~-----------  105 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKY-D---------------KAKLAKILKFAEIGIAALAIYGFHL-----------  105 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhc-c---------------HHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            456777788889999999999999998 9               9998644222  2222222222221           


Q ss_pred             CCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          155 ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                               .+.+.++++++++|++.+...|+..+++.|++++++      |+.++++.+.+.++|.++||.++|++.+.
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     247789999999999999999999999999999887      99999999999999999999999999999


Q ss_pred             cCcchhhhHhHHHHHHHHHH
Q 041588          235 KGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       235 ~g~~~~f~i~~~~~~~~~i~  254 (540)
                      .||++.|+..+++.++++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~  190 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWLA  190 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHH
Confidence            99999885444444444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.65  E-value=2.2e-13  Score=145.42  Aligned_cols=152  Identities=13%  Similarity=0.062  Sum_probs=120.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      ..+..+.+..+...+........+|.+ ++++|.+..+.++..+.+.++..++.++.|+++||+ |              
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G--------------   89 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S--------------   89 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            344555555556566665556666655 889999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||++.++..++.++.+++.....                  ..+...++++++++|+|.|...++..+++.|..++++
T Consensus        90 -~r~~l~~g~~~~~~~~~l~~~~~~------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~  150 (438)
T PRK10133         90 -YKAGIITGLFLYALGAALFWPAAE------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence             999999999999999877643211                  1357788999999999999999999999988754443


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ  232 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~  232 (540)
                            |....+.++....+|..++|.+++.+.
T Consensus       151 ------~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 ------GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  445677888888889888888876543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.65  E-value=1.4e-13  Score=145.96  Aligned_cols=180  Identities=9%  Similarity=-0.076  Sum_probs=133.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...+..+.....++...+..+..-..++|++..+.+++.+++...+.++.++.|+++||+ |              
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G--------------   98 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-G--------------   98 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            6666666666666666666655544444448999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       .|+++.++.++..+.+++++++...                ...+...+++.+++.|++ |...+.....++++||+++
T Consensus        99 -~R~v~~~~~ll~~i~~~~~~~a~~~----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~  160 (462)
T PRK15034         99 -GRRWTVFSTAILIIPCVWLGIAVQN----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK  160 (462)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHcc----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH
Confidence             9999999999999988888765210                013577888999999998 6677888888999999887


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-----hc-------------cCcchhhhHhHHHHHHHHHHHHhc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ-----EQ-------------KGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-----~~-------------~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                            |+++.+++....|+|..+++.+.+.+.     +.             .+|+.++++..+..+++.++.++.
T Consensus       161 ------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        161 ------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             ------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  899999987677777766655544322     22             235555556555555555555444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.64  E-value=1.4e-13  Score=146.34  Aligned_cols=175  Identities=14%  Similarity=0.140  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcccchH-
Q 041588           48 NEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQGRFR-  123 (540)
Q Consensus        48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~~r~~-  123 (540)
                      ..+..+..+..+.++++.|+++++|++..+++.+.++..+...+..|+.|+++||.   +|               ||| 
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G---------------rrr~   71 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG---------------KFRP   71 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC---------------Ccch
Confidence            34556667777788999999999999999999999999999999999999999984   36               755 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588          124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA  203 (540)
Q Consensus       124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~  203 (540)
                      .++.+.....++.+++.......               .......+++...+.+++.+.......++.+|..++.+    
T Consensus        72 ~i~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~----  132 (437)
T TIGR00792        72 WLLIGAIPFSIVLVLLFTTPDFS---------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR----  132 (437)
T ss_pred             hHHHhHHHHHHHHHHHHhCCCCC---------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH----
Confidence            56677777777777766542100               01224455556667788888877788888888875432    


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhhh-------hccCcchhhhHhHHHHHHHHHHHHh
Q 041588          204 IQKYVFFNWFFFAINMGAIFGITVLVYIQ-------EQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-------~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                       +|++..++...+.++|+.+++.+.+.+.       +..||+..+.+.++..++..++...
T Consensus       133 -~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  192 (437)
T TIGR00792       133 -ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF  192 (437)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence             2788888888888888877766655443       2457998888777666555544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.63  E-value=4.8e-14  Score=146.00  Aligned_cols=160  Identities=16%  Similarity=0.086  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .+|..++..+.....++...+.+|.|+.+++|++..+.+.+.+.+.++..++.+++|+++||+ |               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------   65 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-G---------------   65 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-C---------------
Confidence            456677777788888888888888889999999999999999999999999999999999998 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      ||++++++.++..++.+++..+.                    .+.+.+++++++.|++.+.. +...++++|.+|+++ 
T Consensus        66 ~r~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-  123 (366)
T TIGR00886        66 PRYTTTLSLLLLAIPCLWAGLAV--------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI-  123 (366)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh-
Confidence            99999999999999988887762                    04677888899999986654 556788899998876 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhH
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGI  243 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i  243 (540)
                           |+...+++....++|..+++.+++.+..          +.+|++.|++
T Consensus       124 -----r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       124 -----QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             -----hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence                 8899999888888888888777766544          3489999943

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.62  E-value=5.3e-13  Score=145.07  Aligned_cols=181  Identities=12%  Similarity=0.043  Sum_probs=131.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE----MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      +.+..+.+..+...+-...+...++..-.+.    .+.+..+.+.+.+.+.++..++.++.|+++||+ |          
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-G----------   84 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-G----------   84 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c----------
Confidence            3334444444554444443433344322211    234566778899999999999999999999998 9          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           ||+++.++.++..++.++.+.+...               .+..+...+++++++.|++.|+..+....+.+|.+
T Consensus        85 -----rr~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~  144 (502)
T TIGR00887        85 -----RKRVYGMELIIMIIATVASGLSPGS---------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA  144 (502)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHccCc---------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence                 9999999999999988877765210               00012567889999999999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-----------------------ccCcchhhhHhHHHHHHHH
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-----------------------QKGWSVGFGIPTAFTICSI  252 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~  252 (540)
                      |++.      |+.+.++++.+..+|..+++.+..++..                       ..+||+.|.+.++..++..
T Consensus       145 p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~  218 (502)
T TIGR00887       145 TKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL  218 (502)
T ss_pred             Chhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence            9987      9999999999999999998888765432                       2379999977666555544


Q ss_pred             HHHHh
Q 041588          253 IIVAA  257 (540)
Q Consensus       253 i~~~~  257 (540)
                      +..+.
T Consensus       219 ~~~~~  223 (502)
T TIGR00887       219 YFRLT  223 (502)
T ss_pred             HHHHh
Confidence            44333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.62  E-value=1.1e-12  Score=142.21  Aligned_cols=182  Identities=15%  Similarity=0.114  Sum_probs=142.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+..+....++.+++...-..-++-++. ++.-|....+++......-..+..+++|.++||+ .              
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-d--------------   73 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-D--------------   73 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c--------------
Confidence            44555666666777766655555554544 4556777888888888888889999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++.+.++..+..+.+++.....                ..+.+.+++..++.+++.+...|+..+++.++.|+++
T Consensus        74 -rrrili~~~~~~~~~~~~L~~l~~~~----------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   74 -RRRILILSQLLRALVALLLAVLAFFG----------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHhC----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence             99999999988777666655543222                1356777888889999999999999999999999877


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                            ...+.++.....|+.-.+||.++|.+....|-.+.|.+.++..+++++++...++
T Consensus       137 ------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  137 ------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             ------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                  7888899999999999999999999998889888998887776666555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.61  E-value=5.4e-13  Score=138.68  Aligned_cols=157  Identities=13%  Similarity=0.155  Sum_probs=111.9

Q ss_pred             HHHHHhhHhcC--CChhHHHHHHHH--H---HHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHH
Q 041588           62 NMTAYLVREMH--QSLPTAGTHVTD--W---IGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSV  134 (540)
Q Consensus        62 ~l~~yl~~~lg--~s~~~a~~~~~~--~---~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~  134 (540)
                      ++..++.++..  .++.+.+...+.  +   .+...++.++.|+++||+ |               |||+++++.++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g---------------~r~~l~~~~~~~~~   77 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-G---------------RKKTLVITLLMMGI   77 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-h---------------hHHHHHHHHHHHHH
Confidence            34455555543  334444443332  2   222345789999999998 9               99999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588          135 GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFF  214 (540)
Q Consensus       135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  214 (540)
                      +.+++.++.+.+..             .......+++++++.|++.+...+...++++|.+++++      |+...++.+
T Consensus        78 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~  138 (394)
T TIGR00883        78 GTLLIGLLPSYATI-------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQ  138 (394)
T ss_pred             HHHHHhhCCChhhh-------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHH
Confidence            98888776321100             00012357788899999999999999999999998876      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhh--------hccCcchhhhHhHHHHHHHHH
Q 041588          215 FAINMGAIFGITVLVYIQ--------EQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       215 ~~~~iG~~i~p~v~~~l~--------~~~g~~~~f~i~~~~~~~~~i  253 (540)
                      .+..+|..+++.+.+.+.        +..||++.|.+.++..+++.+
T Consensus       139 ~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       139 VGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            999999999988876653        356899999876665544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.60  E-value=2e-12  Score=137.30  Aligned_cols=165  Identities=12%  Similarity=0.040  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc-hH
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR-FR  123 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r-~~  123 (540)
                      +.+..++...++-...+.++.|+.+++|++..+.|++.+.+.++..++++++|+++||+ |               | |+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g---------------~~r~   70 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-L---------------SAQK   70 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ccHH
Confidence            44455566666666679999999999999999999999999999999999999999998 6               5 77


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC--hH
Q 041588          124 TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD--EK  201 (540)
Q Consensus       124 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~--~~  201 (540)
                      ++.++.++..++..+....                     .+...+++.+++.+++.+...+...++..+...+..  -.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~  129 (418)
T TIGR00889        71 VYAVCHFAGALLLFFAAQV---------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVV  129 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCch
Confidence            7777777776766666554                     234556667777777766655555444322211000  00


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i  253 (540)
                      +.-.|.+.++      .+|.+++|.+++.+....+|. +|++.++..++..+
T Consensus       130 ~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~  174 (418)
T TIGR00889       130 TDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV  174 (418)
T ss_pred             hcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence            0001333333      478888888888884332344 45555554444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.57  E-value=4.6e-12  Score=134.14  Aligned_cols=172  Identities=12%  Similarity=0.064  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      ++.+....+...+.+....+.+| .+++++|++..+.+++.+.+.++..++.+++|+++||+ |               |
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G---------------~   67 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-S---------------Y   67 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------c
Confidence            44455555555555544445554 55789999999999999999999999999999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |++++++.++++++.+++..+..                  ..+...+++++++.|+|.|...+...++..+..|+++  
T Consensus        68 r~~~~~g~~l~~~g~~l~~~~~~------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~--  127 (410)
T TIGR00885        68 KAGILLGLFLYALGAFLFWPAAE------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST--  127 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH--
Confidence            99999999999999887654421                  1346778889999999999999999999988887765  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--------------------------ccCcchhhhHhHHHHHHHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQE--------------------------QKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~--------------------------~~g~~~~f~i~~~~~~~~~i~  254 (540)
                          |++..++.+...++|..++|.+++.+..                          ..+|++.|.+.++..++..++
T Consensus       128 ----~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       128 ----ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                6777888888999999999999887642                          236999998766655444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.56  E-value=7.4e-13  Score=137.05  Aligned_cols=145  Identities=16%  Similarity=0.212  Sum_probs=118.2

Q ss_pred             HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588           60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL  139 (540)
Q Consensus        60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l  139 (540)
                      .+.+| .+.+++|++.++++.+.+.+.++..++.++.|+++||+ |               |||++.++.++..++.+..
T Consensus        20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------~r~~~~~~~~~~~~~~~~~   82 (355)
T TIGR00896        20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-G---------------EERSVAAGLLLIAAGILIR   82 (355)
T ss_pred             cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C---------------chHHHHHHHHHHHHHHHHH
Confidence            34444 46678999999999999999999999999999999998 9               9999999988877776655


Q ss_pred             HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                       ..                     .+...+++.+++.|+|.+...+.......|.+++ +      |+...++++.+.++
T Consensus        83 -~~---------------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~  133 (355)
T TIGR00896        83 -SA---------------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMG  133 (355)
T ss_pred             -Hh---------------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHH
Confidence             32                     2356677889999999888777788888888764 3      88899999999999


Q ss_pred             HHHHHHHHHHhhhhccC--cchhhhHhHHHHHH
Q 041588          220 GAIFGITVLVYIQEQKG--WSVGFGIPTAFTIC  250 (540)
Q Consensus       220 G~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~  250 (540)
                      |..+++.+++.+.+..+  |+..|.+.++..++
T Consensus       134 g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       134 GAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            99999999998877653  88888765554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.55  E-value=2.6e-11  Score=127.94  Aligned_cols=166  Identities=13%  Similarity=0.156  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchhhhhhhhcccch
Q 041588           47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~~~~~~~~~~r~  122 (540)
                      ...+.....+.-...-+|.|+.+ .|+|.++.|++..+...  ++..++.|+++||+    +|               ||
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g---------------~r   67 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG---------------RR   67 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC---------------cc
Confidence            34455555566667788999985 69999999998666654  68899999999997    26               66


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          123 R-TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       123 ~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      | .+.++.++.++++..+.+..                  +..+.+.+++..++.++..+...++..++.+|.+|+++  
T Consensus        68 r~~l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--  127 (402)
T PRK11902         68 RGWLLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE--  127 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence            5 67777778877777766541                  11234555555556677788888999999999998877  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHHHHHHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~~~~~~i~  254 (540)
                          |+++.++...+.++|..+++.+++++.+. .||+..|++.++..++..+.
T Consensus       128 ----r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        128 ----RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence                89999999999999999999999988885 49999999877766554443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.55  E-value=2.3e-12  Score=133.37  Aligned_cols=157  Identities=13%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCcchhhhhhhhcccchHHH-HHHHHHHHHHH
Q 041588           62 NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY----LGQPALKHVHAIFKLQGRFRTL-VVFSCIYSVGM  136 (540)
Q Consensus        62 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~----~G~~~~~~~~~~~~~~~r~~~i-~~~~~~~~~~~  136 (540)
                      -+|.+ .+++|+|.++.+..... ..... ..++.|.++||+    +|               |||.+ +.+.++..+.+
T Consensus        10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~G---------------rr~~~l~~~~~~~~~~~   71 (356)
T TIGR00901        10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFG---------------RRRSWLVLTQVLLLSLL   71 (356)
T ss_pred             HHHHH-HHHcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCC---------------ccHHHHHHHHHHHHHHH
Confidence            34454 45789999999988655 33333 388999999997    47               98875 55666666666


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588          137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA  216 (540)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~  216 (540)
                      ..+.+..                  +..+...++...++.+++.+...++..++++|++|+++      |+.+.++...+
T Consensus        72 ~~l~~~~------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~  127 (356)
T TIGR00901        72 LILSFLV------------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVG  127 (356)
T ss_pred             HHHHcCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHH
Confidence            6665441                  11234445555556677777888999999999998876      99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccC--------cchhhhHhHHHHHHHHHHHHhcCc
Q 041588          217 INMGAIFGITVLVYIQEQKG--------WSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       217 ~~iG~~i~p~v~~~l~~~~g--------~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      .++|.++++.+++++.+..|        |+..|++.++..+++.++.++..+
T Consensus       128 ~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       128 YRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999988888        999998887776665555443333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.55  E-value=1.2e-11  Score=132.22  Aligned_cols=197  Identities=12%  Similarity=0.121  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hcCCCcchhhhhhh
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADA----YLGQPALKHVHAIF  116 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~----~~G~~~~~~~~~~~  116 (540)
                      +...+....+...++|-...++++.|+ +++|.+...++.+..+..+...+..++.|++|||    + |           
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-G-----------   71 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-G-----------   71 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-C-----------
Confidence            445566666777788877788888886 5799999999999999999999999999999995    6 9           


Q ss_pred             hcccchHHHHHH-HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          117 KLQGRFRTLVVF-SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       117 ~~~~r~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                          |||.++++ .+..++++++++.+.....+.-    +...............++..+.-++....++...++++|+.
T Consensus        72 ----RRrp~il~g~~~~~~~l~ll~~~~~~~~~~~----~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~  143 (477)
T TIGR01301        72 ----RRRPFIAAGAALVAFAVILIGFAADIGHLFG----DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT  143 (477)
T ss_pred             ----ChHHHHHHHHHHHHHHHHHHHhCchhhhhcc----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                99998875 5556667677666532110000    00000000011133444555556677777788899999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--hhcc-------------CcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI--QEQK-------------GWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l--~~~~-------------g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      |+++++    ++.+++++....++|+.+++.+++++  .+..             +.+..|++.+++.+++.++..+..+
T Consensus       144 p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       144 GGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             CchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            987621    46789999999999999999998865  2211             5677888888877777777666555


Q ss_pred             cc
Q 041588          261 YY  262 (540)
Q Consensus       261 ~~  262 (540)
                      |+
T Consensus       220 E~  221 (477)
T TIGR01301       220 EN  221 (477)
T ss_pred             cc
Confidence            54

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.55  E-value=4e-12  Score=129.79  Aligned_cols=182  Identities=13%  Similarity=0.041  Sum_probs=147.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      .++|.++.-.+........++ +.+.+..++.+++|+|..|.++++.++.+...+..++-|.+.||+ |           
T Consensus        11 ~~~~~L~~S~~af~v~F~VW~-l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-G-----------   77 (417)
T COG2223          11 IARRNLWLSTLAFDVGFMVWT-LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-G-----------   77 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHH-HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-C-----------
Confidence            344666655555555555554 445667778899999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          -|++..++.++.++-.+.++++...+                  +.+.+++..++.|++.|- .+...+..+..||
T Consensus        78 ----gR~~~~~s~~l~~IP~~~~~~a~~~~------------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP  134 (417)
T COG2223          78 ----GRKWTILSMLLLLIPCLGLAFAVTYP------------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFP  134 (417)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHHccCC------------------chHHHHHHHHHHhcccce-ehcccccccccCC
Confidence                99999999999999999988884322                  235666677777776554 4566677899999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC---cchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG---WSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g---~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      +++      ++.+.+++. ..|+|..+...+++.+....|   |+..-.+..+.++++.+.+++..++
T Consensus       135 ~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         135 KEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             hhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            987      899999999 999999999999999998888   9999988888888888877776554

>PRK09952 shikimate transporter; Provisional

Probab=99.50  E-value=7.8e-13  Score=141.25  Aligned_cols=183  Identities=13%  Similarity=0.012  Sum_probs=131.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      ++++....+....++..+.+|.+.++++.|+.+.+|++......+.........++.+++|+++||+ |           
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-g-----------  314 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-G-----------  314 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence            3444434444566777888999999999999999999887665555556666778889999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          |||++.++.++..++.+.+.....                 .......+++..++.+++.+...+...++.+|.+|
T Consensus       315 ----rr~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p  373 (438)
T PRK09952        315 ----RRRVYITGALIGTLSAFPFFMALE-----------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG  373 (438)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHHHH-----------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence                999998887665554443333210                 00122333444555667777777778899999999


Q ss_pred             CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhcc--CcchhhhHhHHHHHHHHHHHHhc
Q 041588          197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQK--GWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~--g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      .+.      |+++.++ +..+..+|++++|.+.+++.+..  +|...+.+.+++.+++.+..+..
T Consensus       374 ~~~------r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        374 ASY------RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             cch------hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            976      8888888 44556689999999999998754  47887877777777776665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.50  E-value=9.9e-13  Score=146.31  Aligned_cols=200  Identities=16%  Similarity=0.173  Sum_probs=148.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      .++|.+...+....+....+.+.......-+.++++++..+.|++.+.+.+++.++.++.|+++||+ |           
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~-----------   96 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-H-----------   96 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-C-----------
Confidence            3445443444434444445555555556677889999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCC----------------CCCCCCCC------------CCCccCC--Cchh
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDS----------------LRPPACKE------------RPCVEVN--GGQN  166 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~------------~~~~~~~--~~~~  166 (540)
                          |+|.+.++.+++.+|.++.++..++-.                ..+..|..            ..|.+..  +...
T Consensus        97 ----r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (633)
T TIGR00805        97 ----RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMW  172 (633)
T ss_pred             ----cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCcee
Confidence                999999999999999999887642110                00112210            0122221  1235


Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----------
Q 041588          167 GFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-----------  235 (540)
Q Consensus       167 ~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-----------  235 (540)
                      ..++++++++|+|.+...+...+++.|.+|+++      |+..+++++.+..+|..+|+++++++.+.+           
T Consensus       173 ~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~  246 (633)
T TIGR00805       173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDV  246 (633)
T ss_pred             hhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCC
Confidence            677899999999999999999999999999987      999999999999999999999999887543           


Q ss_pred             -----------CcchhhhHhHHHHHHHHHHHHhc
Q 041588          236 -----------GWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       236 -----------g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                                 +|+.+|++.+++.++..+.++..
T Consensus       247 ~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       247 ILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                       27777887776665555444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.9e-13  Score=137.92  Aligned_cols=179  Identities=18%  Similarity=0.167  Sum_probs=142.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL-GQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~-G~~~~~~~~~~~~~  118 (540)
                      |-+|.+++++++..+.-|++..|.|.|+.+..|+|..+++...+.|-.+...++++.||+|||++ |             
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg-------------  318 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG-------------  318 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-------------
Confidence            67899999999999999999999999999999999999999999999999999999999999998 5             


Q ss_pred             ccchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          119 QGRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       119 ~~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                        ||..+ ++++++..++.+.+..+.                   +.+.....+.+..+|+..-+.+-.+.....|..|+
T Consensus       319 --rR~p~~~i~~~~i~~~~~~~w~~~-------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK  377 (448)
T COG2271         319 --RRGPMALIFMLLITASLVLYWLAP-------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK  377 (448)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHcCC-------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH
Confidence              66444 444455555555555441                   12455556666666666555554555556788888


Q ss_pred             CChHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +.      .+++.+.-.++..+ |+..+....|++.|.+||...|.+..+..+++.+.++..
T Consensus       378 ~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         378 KA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hh------ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            76      78888888888887 888899999999999999999998777766666655443

>PRK09669 putative symporter YagG; Provisional

Probab=99.49  E-value=2.7e-11  Score=129.61  Aligned_cols=178  Identities=14%  Similarity=0.125  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~  119 (540)
                      +.-.+..+..+..+..+..+++.|+++++|++...++.+..+..+...+..|+.|+++||.   +|              
T Consensus        12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G--------------   77 (444)
T PRK09669         12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG--------------   77 (444)
T ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC--------------
Confidence            3344555677777778888999999999999999999999999999999999999999994   25              


Q ss_pred             cch-HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRF-RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       || +.++++.+...++.+++...   |...            .......+++...+.+++..+......++.+|+.++.
T Consensus        78 -rrrp~il~~~~~~~i~~~l~f~~---p~~~------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~  141 (444)
T PRK09669         78 -QFRPYLLWFAIPFGVVCLLTFYT---PDFG------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP  141 (444)
T ss_pred             -CcchhHHHHHHHHHHHHHHHHhC---CCCC------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH
Confidence             65 55556666666666554433   2110            1123444454555566666677777788899987543


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-------ccCcchhhhHhHHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-------QKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-------~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                      +     +|.+..++.....++|+.+++.+...+..       ..||+..+.+.+++.++..++.
T Consensus       142 ~-----eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~  200 (444)
T PRK09669        142 R-----ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC  200 (444)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            3     27778888888888888777665443322       2357766666555554444433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.48  E-value=5.8e-12  Score=126.41  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=102.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588           73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA  152 (540)
Q Consensus        73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  152 (540)
                      -+..-+|.+-+.|.+...++.+..|.+||++ |               ||++++++.+..++.+++.+.+          
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-G---------------Rkpvll~c~~~va~s~ll~~~S----------  118 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-G---------------RKPVLLACLIGVALSYLLWALS----------  118 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-C---------------chHHHHHHHHHHHHHHHHHHHH----------
Confidence            3445688999999999999999999999999 9               9999999999999988888877          


Q ss_pred             CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588          153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ  232 (540)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~  232 (540)
                                 .+...+.++|++.|+..|-. ...-++++|.+++++      |+.+++....+..+|..+||+++|++.
T Consensus       119 -----------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla  180 (451)
T KOG2615|consen  119 -----------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLA  180 (451)
T ss_pred             -----------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHH
Confidence                       34556777799999888754 566788999999977      999999999999999999999999998


Q ss_pred             h
Q 041588          233 E  233 (540)
Q Consensus       233 ~  233 (540)
                      +
T Consensus       181 ~  181 (451)
T KOG2615|consen  181 Q  181 (451)
T ss_pred             h
Confidence            7

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.47  E-value=4e-12  Score=133.70  Aligned_cols=176  Identities=12%  Similarity=0.041  Sum_probs=129.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      ++..+..+...+.....++....++|.|+++++|++..+++.+.+...+...++.+++|+++||+ |             
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g-------------  280 (393)
T PRK15011        215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-G-------------  280 (393)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence            34444444444555556666677899999999999999999888887777888899999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        ||+.+..+.....+....+...                     .+...+++.+++.+++.|...+...+...|.+|+ 
T Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-  336 (393)
T PRK15011        281 --KRFLMRVAAVAGVCFYAGMLMA---------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-  336 (393)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence              9998877665555444333322                     1234445555555555555445555667788875 


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +      ++++.++++...++|..++|.++|++.+..||+..|++..+..++++++.+..
T Consensus       337 ~------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        337 Q------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             C------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            3      78899998888999999999999999999999999988777777776666544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.46  E-value=6.2e-11  Score=127.68  Aligned_cols=179  Identities=11%  Similarity=0.032  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      ..+....+.+.+. +.+...++.++.+++|++..+.+...+.......+-++ .|.++||+ +-.++  -        ||
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~--r--------Rr   95 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGY--T--------KR   95 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCc--c--------ch
Confidence            3444467777787 77777888899999999999998888887777777665 99999998 41111  1        55


Q ss_pred             HHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          123 RTLVVFSCIYS-VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       123 ~~i~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      +.++++.++.. ++...++..                    ........+.+.+.+++.+....+..++..|..+ ++++
T Consensus        96 ~~l~~~~~l~~~~~~~~l~~~--------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~  154 (468)
T TIGR00788        96 WYLVLSGLLGSAILYGLLPGK--------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS  154 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC
Confidence            55566655542 222222111                    0122333346678889988888999999999998 3321


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                         .++...++.|.+.++|..+++.++|++.+..||+..|++.++..++..+...+.
T Consensus       155 ---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       155 ---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             ---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence               144566677888899999999999999999999999998877766664444343

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.46  E-value=3.2e-12  Score=138.53  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=128.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +++.....+...++....+|++..++|.|+++.+|++..+++.......++..++.+++|+++||+ |            
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g------------  314 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-G------------  314 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence            444444444455667788999999999999989999988888777777888889999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVL-LTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                         ||+++.++.++..++.+. +....                   ..+...+++++++.+++.++..+...++.++.+|
T Consensus       315 ---rr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p  372 (490)
T PRK10642        315 ---RRPFVILGSVALFVLAIPAFILIN-------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFP  372 (490)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence               999988887654433332 22221                   0224456667777777666556667778889999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ++.      |+++.++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++.
T Consensus       373 ~~~------Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        373 THI------RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             Ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            987      9999998555566677889999999987654 6666655555555555544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=2.5e-12  Score=138.48  Aligned_cols=177  Identities=16%  Similarity=0.051  Sum_probs=133.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++....++++..++|.|+++++|++..+++.....+..+..++.+++|+++||+ |              
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g--------------  322 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-N--------------  322 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
Confidence            5678888888888888899999999999999999999999999989999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+.+...+..++..++.+..                   ..+....++.+++.|++..+..........|.+|++.
T Consensus       323 -~r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~  382 (467)
T PRK09556        323 -GRRALVACIALALIIFTLGVYQH-------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA  382 (467)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHh-------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh
Confidence             99887766544444332222221                   0123334455555554333322223355679999877


Q ss_pred             hHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhh------------ccCcchhhhHhHHHHHHHHHHHHh
Q 041588          200 EKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQE------------QKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~------------~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                            ++++.++.+...++ |+.++|.+.|++.|            ..||+.+|++..++.+++.+..+.
T Consensus       383 ------~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        383 ------IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ------HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence                  99999999999987 77999999999999            578999998887777776665543

>PRK09848 glucuronide transporter; Provisional

Probab=99.44  E-value=1.3e-10  Score=124.54  Aligned_cols=157  Identities=12%  Similarity=0.048  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.-.+..+..+..+..+.++++.|+++.+|++..++|.+.....+...+..+++|+++||. |+          + .|||
T Consensus        11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-~~----------~-~Gr~   78 (448)
T PRK09848         11 VGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSV-NT----------R-WGKF   78 (448)
T ss_pred             HhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecC-CC----------C-CcCc
Confidence            4444567777888888888999999999999999999999999999999999999999996 40          0 0166


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          123 RTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       123 ~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |.. +++.+...+..+++.....  ..            .........++...+.+++.+...++..++..++.++.++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-  143 (448)
T PRK09848         79 RPFLLFGTAPLMIFSVLVFWVPT--DW------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-  143 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcC--CC------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-
Confidence            654 5565555544444322110  00            0011233344455667788888888888877776654331 


Q ss_pred             HHHhhhhhHHHHHHH-----HHHHHHHHHHHHHh
Q 041588          202 EAIQKYVFFNWFFFA-----INMGAIFGITVLVY  230 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~-----~~iG~~i~p~v~~~  230 (540)
                          |....++..++     .+++..++|.+.+.
T Consensus       144 ----r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        144 ----RARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                55555554433     34555666666554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.43  E-value=5.3e-10  Score=117.34  Aligned_cols=178  Identities=12%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH--HHHHHHHHHHHHHHH-HHHhhhhcCCCcchhhhhhhhc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTH--VTDWIGAAYVLTILG-AFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~--~~~~~~~~~~~~~~g-G~laD~~~G~~~~~~~~~~~~~  118 (540)
                      ...+....+.+.+.+....+.+|.|++ +.|.|..+.|+.  ...+.....+..++. ++.+||+ |             
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g-------------   67 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-G-------------   67 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-C-------------
Confidence            455666778888888888899999997 469999999997  355566665555444 7789997 9             


Q ss_pred             ccchHHHHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          119 QGRFRTLVVFSCI-YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       119 ~~r~~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                        |||..++...+ ..+....+....  +.               ......++....+.++..+...+...++..|..++
T Consensus        68 --~r~~~i~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~  128 (390)
T TIGR02718        68 --RRRSWVLPMQCLVSACLASLALVG--PD---------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG  128 (390)
T ss_pred             --cchhHHHHHHHHHHHHHHHHHcCC--cc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence              99997666533 222222222111  11               01122233333444455555556666666665554


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      ++      ++.+.+...++..+|..+++.+.+++.++.||+..|++.++..++..+..+...
T Consensus       129 ~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       129 RT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             hh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43      566667777788999999999999999999999999988877666555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.4e-12  Score=128.77  Aligned_cols=152  Identities=14%  Similarity=0.074  Sum_probs=136.8

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 041588           70 EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLR  149 (540)
Q Consensus        70 ~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~  149 (540)
                      .++.++++.|++.........+..++.|.+.||+ |               +|-.+++|.+++...++++++..      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-G---------------y~ipm~~Gl~vmf~sTilFafg~------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-G---------------YKIPMVAGLFVMFLSTILFAFGN------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-c---------------cccHHHHHHHHHHHHHHHHHHcc------
Confidence            4566788899999999999999999999999998 9               99999999999999999999873      


Q ss_pred             CCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041588          150 PPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLV  229 (540)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~  229 (540)
                                     +++.++++|.++|+|.++...+-.++++|.||++++     |++++++.-.++.+|-.+||.++|
T Consensus       158 ---------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGG  217 (464)
T KOG3764|consen  158 ---------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGG  217 (464)
T ss_pred             ---------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCccc
Confidence                           477899999999999999999999999999999873     899999999999999999999999


Q ss_pred             hhhhccCcchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588          230 YIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR  263 (540)
Q Consensus       230 ~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~  263 (540)
                      .+.+..|++..|.+++++.++...+-++..+.++
T Consensus       218 ilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  218 ILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             chHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            9999999999999999888887776555554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=6e-12  Score=129.99  Aligned_cols=171  Identities=15%  Similarity=0.105  Sum_probs=134.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+.+....++..........+++.|. +++|.+..+++.....+.....++.+++|+++||+ |              
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g--------------  268 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-G--------------  268 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence            3445555555555556555666667775 56899998899999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+.++.++..++.+++.....                   .....++....+.+++.+...+..+++.+|.+|+++
T Consensus       269 -~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  328 (377)
T TIGR00890       269 -RQKTMSIVFGISAVGMAAMLFIPM-------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN  328 (377)
T ss_pred             -hhhhhhHHHHHHHHHHHHHHHccc-------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh
Confidence             999999998888888777665421                   112233445566777888777778888999998876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSI  252 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~  252 (540)
                            |++.+++++...++|..++|.+.|++.++.||+..|.+.+++.++++
T Consensus       329 ------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       329 ------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence                  89999999999999999999999999999999999988776665543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.41  E-value=1.6e-10  Score=124.70  Aligned_cols=176  Identities=13%  Similarity=0.028  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCcchhhhhhhhc
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD----AYLGQPALKHVHAIFKL  118 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD----~~~G~~~~~~~~~~~~~  118 (540)
                      +.--+..+..++.+..+.++++.|+++.+|++...+|.+..+.-+...+..|+.|+++|    |+ |             
T Consensus         9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-G-------------   74 (473)
T PRK10429          9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-G-------------   74 (473)
T ss_pred             HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-C-------------
Confidence            33445667778888888999999999999999999999999999999999999999999    54 7             


Q ss_pred             ccc-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          119 QGR-FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       119 ~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                        | |+.++++.+...+++.++...   |..            ++......+++...+..++..+......++.+|+.++
T Consensus        75 --rrrp~il~g~i~~~i~~~llf~~---p~~------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~  137 (473)
T PRK10429         75 --KFKPWILIGTLANSVVLFLLFSA---HLF------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD  137 (473)
T ss_pred             --CcchhHhhhhHHHHHHHHHHHcC---CCC------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC
Confidence              7 555666777777776666432   110            0112233444445566778888888888999998754


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-------cCcchhhhHhHHHHHHHHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-------KGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-------~g~~~~f~i~~~~~~~~~i~  254 (540)
                      .+     +|.+..++-....++|+.+.+.+...+.+.       .||+....+.+++.+++.++
T Consensus       138 ~~-----eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        138 KR-----EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            33     277888886777777766665554433221       24555544444444443333

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.40  E-value=1.1e-11  Score=129.76  Aligned_cols=153  Identities=12%  Similarity=0.032  Sum_probs=132.1

Q ss_pred             HHHHHHhhHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588           61 VNMTAYLVREMHQSLPT-AGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL  139 (540)
Q Consensus        61 ~~l~~yl~~~lg~s~~~-a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l  139 (540)
                      ++...|+.+++|++..+ .+.+.+.+..++.++.+++|+++||+ |               .|+++.++.+.+.+..+++
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G---------------~K~vL~l~~l~Wsl~t~L~  109 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-R---------------YKPVLVLQALSFVCVWLLL  109 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-C---------------chHHHHHHHHHHHHHHHHH
Confidence            55667899999999999 99999999999999999999999998 9               9999999999999999999


Q ss_pred             HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                      +++.                     +...+.+.+++.|++.|+.. +...++..++|+++      |+++.++.+.+.++
T Consensus       110 ~fa~---------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~v  161 (511)
T TIGR00806       110 LLGT---------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLL  161 (511)
T ss_pred             HHHH---------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            9873                     47789999999999999988 88999999999887      99999999999999


Q ss_pred             HHHHHHHHHHhhhhccCcchhhhH---hHHHHHHHHHHHHhc
Q 041588          220 GAIFGITVLVYIQEQKGWSVGFGI---PTAFTICSIIIVAAG  258 (540)
Q Consensus       220 G~~i~p~v~~~l~~~~g~~~~f~i---~~~~~~~~~i~~~~~  258 (540)
                      |.++++.+++++ ..+||+.-+.+   ......+++++.++.
T Consensus       162 G~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       162 GVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999995 46788875543   444445555554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.39  E-value=4e-12  Score=132.09  Aligned_cols=173  Identities=17%  Similarity=0.127  Sum_probs=131.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      +++++.++......++....++.+..++|.|+++++|.+..+++.......+...++.+++|+++||+ |          
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g----------  283 (394)
T TIGR00883       215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-G----------  283 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----------
Confidence            33344567777777888888998999999999989999999999999889999999999999999998 9          


Q ss_pred             hhcccchHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          116 FKLQGRFRTLVVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                           ||+.+..+..+..+.. .++....  .                ..+...+++...+.+++.+...+...++.+|.
T Consensus       284 -----~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  340 (394)
T TIGR00883       284 -----RRPVLIIFTVLAALLAVPLLMALL--D----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPEL  340 (394)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHh--c----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence                 9998876655444332 2222110  0                01244555666777787877888889999999


Q ss_pred             CCCCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHH
Q 041588          195 YDEADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFT  248 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~  248 (540)
                      +|++.      |+++++. +..+..+|+.++|.++|++.++.| |+..++..+++.
T Consensus       341 ~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       341 FPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             CCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            99877      8888887 456667899999999999999888 877666544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.39  E-value=1.4e-11  Score=129.55  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=132.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++.+.+..++...+++++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |              
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~--------------  269 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-D--------------  269 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence            4556666677777778888999999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.....+..++..++...                     .+.....+..++.|++.+...+...+...+..+++ 
T Consensus       270 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-  326 (394)
T PRK03699        270 -LQRILTVLAGLALVLMYLFVNT---------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-  326 (394)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence             9998887776666655444433                     12233444556677766666677777777776644 


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~  254 (540)
                            ++...++.+.+.++|+.++|.+.|++.+..|++..|++..++.+++.+.
T Consensus       327 ------~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        327 ------SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             ------CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence                  3455677778889999999999999999999999998766666555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.39  E-value=3.7e-11  Score=126.45  Aligned_cols=180  Identities=12%  Similarity=-0.024  Sum_probs=139.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..|.+.+..++...+++++..++|.|+.+ +|.+..+++...+.+.++..++.+++|+++||+ |              
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~--------------  268 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-D--------------  268 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-c--------------
Confidence            345666666677788888999999999976 899999999999999999999999999999997 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+.++..+..++..++....                    .+....  ...+.+++.+...+.......+.+++++
T Consensus       269 -~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~  325 (393)
T PRK09705        269 -RRKLLMLALVLQLVGFCGFIWLP--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA  325 (393)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHcc--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH
Confidence             99999988877777766554321                    111112  2235677777777777767777775432


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFPYYR  263 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~~~~  263 (540)
                           ++++.+++.+...++++.++|.+.|++.|+.| |...|++.+++.++.++......++.+
T Consensus       326 -----~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        326 -----IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                 28899999999999999999999999999887 888888877777776666666555544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=1.4e-11  Score=129.61  Aligned_cols=173  Identities=13%  Similarity=0.077  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF  128 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~  128 (540)
                      ..+..+.++.+..+++.|+.+ .|++  +.+.....+.++..++.++.|+++||+ |               |||.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~---------------~~~~~~~~  285 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-G---------------GLRVAIVS  285 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHH
Confidence            344456677777888888864 5653  445566677777888899999999998 9               99999888


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588          129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV  208 (540)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  208 (540)
                      ..+..++.+.+...                     .+...++++.++.|++.+...+.......|.+|++.      |++
T Consensus       286 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~  338 (399)
T PRK05122        286 LLVEILGLLLLWLA---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGA  338 (399)
T ss_pred             HHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            88877777766654                     134456667778888888777777777778887665      899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCC
Q 041588          209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKP  267 (540)
Q Consensus       209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~  267 (540)
                      ++++++...++|..++|.+.|++.+..||+..|++.+++.+++++.....+++.+++.|
T Consensus       339 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        339 ALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            99999999999999999999999999999999998888777777766666555444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.38  E-value=3.1e-10  Score=123.31  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=119.5

Q ss_pred             HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 041588           61 VNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT  140 (540)
Q Consensus        61 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~  140 (540)
                      +....++.+++|-+ ....++.+.+.+...++.++.|.|||.+ |               ||..++++.++.++|.+..+
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-G---------------Rr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-G---------------RRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-c---------------chHHHHHHHHHHHhHHHHhh
Confidence            34456888899876 4566888889999999999999999997 9               99999999999999999988


Q ss_pred             HhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHH
Q 041588          141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG  220 (540)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG  220 (540)
                      .+                     ++...++.+..+.|+|.|... .....++|..|.+.      |..+..+.....-+.
T Consensus       127 tA---------------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~  178 (599)
T PF06609_consen  127 TA---------------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIIT  178 (599)
T ss_pred             cC---------------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhh
Confidence            66                     457788999999999977654 44556799998876      766666555544454


Q ss_pred             HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH-HHhcCc
Q 041588          221 AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII-VAAGFP  260 (540)
Q Consensus       221 ~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~-~~~~~~  260 (540)
                      ..++|.++..+..+.+|||.|++.++...++++. +++.+|
T Consensus       179 ~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  179 TWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             hcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            5566777766666678999999988876666554 334444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.38  E-value=2.5e-11  Score=125.99  Aligned_cols=173  Identities=13%  Similarity=0.037  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      .+.+....++.....+....++|.|+.+++|.+..+++.+.....+...++.+++|+++||+ |               |
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g---------------~  264 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-G---------------K  264 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c---------------c
Confidence            34344444444444555667789999999999999998888777777778889999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |+++.++.++..++...+...                     .+.+.+++...+.+++.+...+...++..|..|++   
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~---  320 (375)
T TIGR00899       265 RRLMLLAALAGVAFYTGLAAD---------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR---  320 (375)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---
Confidence            999988776655554444433                     13444555666777777776677777778887653   


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                          ++++.++++...++|..++|.+.|++.+..||+..|++.+++.+++.++....
T Consensus       321 ----~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       321 ----AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence                56889999999999999999999999999999999998888777776665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=1.3e-11  Score=132.32  Aligned_cols=180  Identities=14%  Similarity=0.121  Sum_probs=125.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|...+..++....+|++..++|.|++++.|++..+++.....+.....++.+++|+++||+ +             .
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~-------------~  318 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F-------------R  318 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-------------c
Confidence            5577777888888888899999999999999999999998888888888889999999999997 4             0


Q ss_pred             cchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                      +||+.. +....+..++.+.+....   .                .+....++.+.+.+.+..........+..|.+|++
T Consensus       319 ~r~~~~~~~~~~l~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  379 (452)
T PRK11273        319 GNRGATGVFFMTLVTIATIVYWLNP---A----------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK  379 (452)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhc---c----------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence            044332 222233333333322210   0                12222333334444433222223345567888887


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIF-GITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i-~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      .      |+++.++.+...++|+.+ +|.+.|++.|+.||+..|+++.+..+++++.....
T Consensus       380 ~------~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        380 A------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             h------hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7      999999999888898765 79999999999999999998887777766655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.37  E-value=6.6e-11  Score=125.97  Aligned_cols=179  Identities=10%  Similarity=0.061  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCcchhhhhhhhcccchHH
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD----AYLGQPALKHVHAIFKLQGRFRT  124 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD----~~~G~~~~~~~~~~~~~~~r~~~  124 (540)
                      .+.....+.....+++.|+++.+|++...++.+..+..+...+..|+.|+++|    |+ |               |||.
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-G---------------rrrp   73 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-G---------------RRRP   73 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-c---------------ccce
Confidence            46666777777789999999999999999999999999999999999999999    65 7               6655


Q ss_pred             HH-HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHH
Q 041588          125 LV-VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA  203 (540)
Q Consensus       125 i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~  203 (540)
                      .+ ++.++..++++++....  |..           -........+.+...+..++......+..++.+|..++.+    
T Consensus        74 ~~l~g~i~~~~~~~llf~~~--p~~-----------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~----  136 (428)
T PF13347_consen   74 WILIGAILLALSFFLLFSPP--PAG-----------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD----  136 (428)
T ss_pred             EeehhhHHHHHHHHHhhccc--cch-----------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh----
Confidence            55 67777888777776430  100           0011233444566666788888899999999999987654    


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                       +|....++.....++|.++...+.+.+.+..       +|++...+.+++.+++.++..+..|+
T Consensus       137 -~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  137 -ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             -hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence             2788888887888888766655555544322       57777776666666655555554444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.37  E-value=2.1e-11  Score=129.99  Aligned_cols=182  Identities=12%  Similarity=0.007  Sum_probs=123.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ +            
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~-~------------  309 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN-G------------  309 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-C------------
Confidence            456777777777777888888999999988899999999999999999999999999999999732 0            


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                      +|++......+...++...+...   +.                .+.....+..+++|++............+|.+|++.
T Consensus       310 ~r~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  370 (434)
T PRK11663        310 NRGPMNLIFAAGILLSVGSLWLM---PF----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA  370 (434)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHc---cc----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh
Confidence            02232222222222222222111   10                112222222223333222222223445678887665


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                            |++..++.+...++|+.++|.+.|++.|..||+..|++.+++.+++.++.+...
T Consensus       371 ------~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        371 ------AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             ------HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence                  999999999999999999999999999999999999888777766665554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.37  E-value=2.6e-11  Score=125.69  Aligned_cols=180  Identities=15%  Similarity=0.021  Sum_probs=129.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++..++..++....++.+..+++.|+.+.+|.+..+++.+.....+...++.+++|+++||+ |              
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--------------  279 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-L--------------  279 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence            5667778888888899999999999999999999999999999999999999999999999998 8              


Q ss_pred             cchHH-HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRT-LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       ||+. +........++.+...........              ..... ..+...+.+.+..+..+...++.+|.+|++
T Consensus       280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (399)
T TIGR00893       280 -RRGKSLVFARKTAIIAGLVLSLLMFATNY--------------VNIPY-AALALVALGFFGLGAGAIGWALISDNAPGN  343 (399)
T ss_pred             -hcccchhHHHHHHHHHHHHHHHHHHHhcc--------------chhHH-HHHHHHHHHHhchhhhhHHHHHHHhhcChh
Confidence             7752 111111111211111111000000              01122 222333333333336788899999999987


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +      |++.+++++...++|+.++|.+.|++.+..| |...|.+.+++.+++.++.+
T Consensus       344 ~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       344 I------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             H------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            7      9999999999999999999999999999988 99999887777666655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.36  E-value=2.1e-09  Score=113.08  Aligned_cols=115  Identities=17%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT  124 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~  124 (540)
                      +....++..+++-...++++.|+.+ .|+|..+.|.+.+...+...+.+++.|+++||...               ++|.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~---------------~~~~   70 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGS---------------AKRI   70 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---------------HHHH
Confidence            4455566666666677899999975 78999999999999999999999999999999855               6777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                      +.+..++..+.+......                     .+.+.++...++..+......|...++.-+...
T Consensus        71 l~~~~l~~~~~~~~~~~~---------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   71 LALLSLLSALALLLLAFS---------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777666655555444433                     234555555666777777767777776665554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=4.6e-11  Score=121.83  Aligned_cols=173  Identities=17%  Similarity=0.245  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..+...+..++....+.....+++.|+.+.+|.+..+.+........+..++.++.|+++||+ |               
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---------------  239 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-G---------------  239 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------
Confidence            344455556667777777888899999888899999999999999999999999999999998 9               


Q ss_pred             chH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          121 RFR-TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       121 r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                      ||+ .+..+..+..++.+.+....                     +....++...+.+++.+...+...++..|..|+++
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T cd06174         240 RRRLLLLIGLLLAALGLLLLALAP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA  298 (352)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH
Confidence            999 99999988888888877652                     35667778889999999999999999999998865


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                            |++.++.++...++|..++|.+.+++.+..||+..|.+.++..+++.+...
T Consensus       299 ------~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         299 ------RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence                  999999999999999999999999999989999999988887777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.3e-09  Score=110.91  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588           60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL  139 (540)
Q Consensus        60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l  139 (540)
                      .-.+...+++.++++..+++.+-..+.+++.+..+..|++.+|+ |               +|+.++.|..++++|..++
T Consensus        32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-g---------------yk~gi~lgL~l~avg~~lF   95 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-G---------------YKAGIVLGLLLYAVGAALF   95 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-h---------------hHHHHHHHHHHHHHHHHHH
Confidence            34566778889999999999999999999999999999999998 9               9999999999999998888


Q ss_pred             HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                      .-++                  +...+..++.++++++.|.+..+.+..++++++.+++.      ...-.++......+
T Consensus        96 ~pAa------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~l  151 (422)
T COG0738          96 WPAA------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGL  151 (422)
T ss_pred             hhhh------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhh
Confidence            6443                  22468889999999999999999999999999998865      34456677778889


Q ss_pred             HHHHHHHHHHhhhh
Q 041588          220 GAIFGITVLVYIQE  233 (540)
Q Consensus       220 G~~i~p~v~~~l~~  233 (540)
                      |+.++|.+++++..
T Consensus       152 Ga~~gp~~g~~lil  165 (422)
T COG0738         152 GAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998766

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.34  E-value=4.2e-10  Score=119.38  Aligned_cols=141  Identities=12%  Similarity=0.138  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 041588           79 GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPC  158 (540)
Q Consensus        79 ~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (540)
                      +.+++++.++..++..++|+++||+ |               ||..++++.++..++.++...+-..             
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-G---------------RK~~l~~~~~l~~~~~~~~~~s~~~-------------  113 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-G---------------RKNALLLSNLLAVLAALLMGLSKSA-------------  113 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-c---------------chHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence            5678889999999999999999998 9               9999999999888888888776432             


Q ss_pred             ccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH-Hhhh-hccC
Q 041588          159 VEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL-VYIQ-EQKG  236 (540)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~-~~l~-~~~g  236 (540)
                           +....+.++|++.|+..|......+-++.|.-|++-      ||..-.....+.++|-.++..++ ..+. ....
T Consensus       114 -----~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~  182 (485)
T KOG0569|consen  114 -----PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDL  182 (485)
T ss_pred             -----hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcc
Confidence                 347889999999999999999999999999999987      88888888889999998885543 3333 3446


Q ss_pred             cchhhhHhHHHHHHHHHHHHhcC
Q 041588          237 WSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       237 ~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      |++.+....+..++.+++..+..
T Consensus       183 W~~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  183 WPYLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999888887776666655543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.4e-10  Score=125.35  Aligned_cols=175  Identities=12%  Similarity=0.080  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAIAV---NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~---~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+.++.|+.+...+++..   .+-..+.++++.+..+++++.++..+...+..++.+.+.||+ |              
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g--------------  109 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-G--------------  109 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-C--------------
Confidence            6677777777777776632   334566788999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHH-HHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCAL-GLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       .|++.++|.++..+|+++..++.                     +.+.+++.. ++.|+|.|+.......+++..|+++
T Consensus       110 -~R~v~i~G~~v~~~g~~lssF~~---------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk  167 (509)
T KOG2504|consen  110 -CRTVMIAGGLVAALGLLLSSFAT---------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK  167 (509)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH
Confidence             99999999999999999999883                     456666665 4578999988888888888777664


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                             |+.+.++-..+..+|..+-|.+.-++.+.+||+..+++...+.+-.++.....+|.
T Consensus       168 -------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~  223 (509)
T KOG2504|consen  168 -------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL  223 (509)
T ss_pred             -------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                   88888888888899999999999999999999999998777765555555555553

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=4.3e-10  Score=122.67  Aligned_cols=134  Identities=16%  Similarity=0.259  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 041588           77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKER  156 (540)
Q Consensus        77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  156 (540)
                      +.+++.+...+++.++.++.|.++|++ |               ||++++++.+++.+|.++.+.+              
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-G---------------Rk~~l~~~~~~~~iG~ii~~~a--------------  139 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-G---------------RKKTLLLAVVLFLIGAIIIALA--------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------------hHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            348999999999999999999999998 9               9999999999999999999988              


Q ss_pred             CCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc--
Q 041588          157 PCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ--  234 (540)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~--  234 (540)
                             .+...++++|++.|+|.|+.....+.+.+|.-|++.      |+...+.+.++.++|..++.. .++..++  
T Consensus       140 -------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~  205 (513)
T KOG0254|consen  140 -------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVY  205 (513)
T ss_pred             -------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCC
Confidence                   368899999999999999999999999999999887      999999999999999988844 4444444  


Q ss_pred             cCcchhhhHhHHHHHHHHHH
Q 041588          235 KGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       235 ~g~~~~f~i~~~~~~~~~i~  254 (540)
                      .+||..+++..+..++..+.
T Consensus       206 ~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  206 AGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            48998888766665555555

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=5.2e-11  Score=127.16  Aligned_cols=180  Identities=12%  Similarity=0.067  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|...+..++....+|++..++|.|+++..|++..+++.....+.+...++.+++|+++||+ |              
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~--------------  315 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F--------------  315 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence            4567777777777788889999999999998999999999999888889999999999999998 6              


Q ss_pred             cchHHHHHHHHHHHH---HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          120 GRFRTLVVFSCIYSV---GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                       +++....+..+..+   +.+.+...   +.                .+........++.+.+..+..........|.+|
T Consensus       316 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  375 (438)
T TIGR00712       316 -KGNRGATGVFFMTLVTIAVIVYWMN---PA----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAP  375 (438)
T ss_pred             -cCcccHHHHHHHHHHHHHHHHHHhc---CC----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcC
Confidence             54433333322221   11111111   00                112222333334444332222222345678888


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGA-IFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~-~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++.      |+++.++++...++|+ +++|.+.|++.|+.||..+|++.+++.+++.+..++..+
T Consensus       376 ~~~------~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       376 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             hhh------eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            776      8999999998888875 689999999999999999998877777777666655444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.31  E-value=5.7e-11  Score=125.13  Aligned_cols=171  Identities=10%  Similarity=-0.022  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.+....++....++.+..++|.|+.+ .|++..+++.......++..++.+++|+++||+ |               ||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~~  285 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-R---------------PR  285 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-h---------------HH
Confidence            444444555566777788889999875 799999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+..+.+...++.+.+...                     .+...+.+..++.+++.++..+...++..|.+|+++   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---  341 (406)
T PRK11551        286 RVVLLIYAGILASLAALAAA---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV---  341 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh---
Confidence            99888766666665555433                     123344455566777777777888889999999887   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~  257 (540)
                         |+++.++++....+|+.++|.+.|++.++.+ |...+++...+.+++.+..+.
T Consensus       342 ---~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        342 ---RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             ---hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence               9999999999999999999999999988754 555665555555555444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.30  E-value=2.4e-11  Score=128.91  Aligned_cols=172  Identities=13%  Similarity=0.094  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREM---HQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+++..++....+.....+++.|+.+.+   +.+..+.+.+.++......++.+++|+++||+ |              
T Consensus       226 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g--------------  290 (420)
T PRK09528        226 WFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-G--------------  290 (420)
T ss_pred             EeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            33333334444444445556778877543   55666778888888888889999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+.++.++..++..++.+.                     .+...+++...+.+++.+...+....+..|.+|++.
T Consensus       291 -~~~~~~~~~~l~~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  348 (420)
T PRK09528        291 -AKNALLLAGTIMAVRIIGSGFA---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL  348 (420)
T ss_pred             -cchhhHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence             9999999988888887777665                     234556666777777777666667778888888766


Q ss_pred             hHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          200 EKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       200 ~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                            +++.++. ++.+.++|++++|.+.|++.|..||+..|.+.+++.++..++.+.
T Consensus       349 ------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        349 ------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             ------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence                  7777665 677889999999999999999999999999877766555544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.30  E-value=4.9e-11  Score=124.78  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      ..+.....+.....+++..++|.|+.+++|++..+++.+.....++..++.++.|+++||+ |               ||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g---------------~~  304 (405)
T TIGR00891       241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-G---------------RR  304 (405)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------ch
Confidence            3334444445555666778899999999999999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+.++.++..+..+.+....                    .+...+.++..+.++..++..+...++..|.+|++.   
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  361 (405)
T TIGR00891       305 KAYVCSLLAGQLLIIPVFAIG--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ---  361 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHhC--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---
Confidence            998888765533222222110                    123444455555666666666778888999998876   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhH
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGI  243 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i  243 (540)
                         |++.+++.+...++|+.++|.+.|++.|+.| |+..+..
T Consensus       362 ---~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 ---RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             ---hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence               9999999999999999999999999999988 8776654

>PRK11462 putative transporter; Provisional

Probab=99.30  E-value=9e-09  Score=110.72  Aligned_cols=177  Identities=13%  Similarity=0.151  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~~~~  119 (540)
                      +.--+..+..++.+..+..++..|+++.+|++...+|.+..+.-+.-.+.-|+.|+++||.   +|              
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G--------------   77 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG--------------   77 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC--------------
Confidence            3344566777888888889999999999999999999999999999999999999999984   35              


Q ss_pred             cch-HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRF-RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       || +-++++.+...++++++...   |...            .......+++...+..++..+......++.+++-++.
T Consensus        78 -r~rp~il~g~i~~~i~~~llf~~---p~~s------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~  141 (460)
T PRK11462         78 -KFRPWVLFGALPFGIVCVLAYST---PDLS------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP  141 (460)
T ss_pred             -CcchhHhHHHHHHHHHHHHHHhC---CCCC------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence             55 55556667777777666543   2110            1122334444555667888888888889999987654


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-------CcchhhhHhHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-------GWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-------g~~~~f~i~~~~~~~~~i~  254 (540)
                      +     +|.+..++...+.++|+.+++.+...+.+..       ||.....+.+++.+++.++
T Consensus       142 ~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        142 T-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            4     2888999988888988887777654443322       4555554444444344333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.29  E-value=8.1e-11  Score=123.81  Aligned_cols=171  Identities=13%  Similarity=0.044  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLP---TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      ++...++.......+.++++.|+.+..+....   ..+.+..++.+...++.+..|+++||+ |               |
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g---------------~  287 (408)
T PRK09874        224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-G---------------P  287 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------------c
Confidence            33334444555556677788888765443222   234555556667778888999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      |+++..+..+..++.+.+...                     .+.+.+++..++.|++.+...+...+...+..|++.  
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--  344 (408)
T PRK09874        288 EKILITALIFSVLLLIPMSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI--  344 (408)
T ss_pred             chhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc--
Confidence            999999888777766665543                     134556677778899998888888888888877766  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                          +++.+++++...++|..++|.++|++.+..||+..|++.+++.+++.+.....
T Consensus       345 ----~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        345 ----AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             ----ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence                89999999999999999999999999999999999998888777776665443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.29  E-value=8.5e-11  Score=131.89  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccC
Q 041588           82 VTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEV  161 (540)
Q Consensus        82 ~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (540)
                      ..+..++..++.+++|+++||+ |               ||++++++.++.+++.+++++..                  
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-G---------------Rr~~l~~~~~lsai~~ll~~~~~------------------  646 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-G---------------RLRMLAGSMVLSCISCFFLSFGN------------------  646 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-C---------------CHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence            4445577788999999999998 9               99999999988888888777652                  


Q ss_pred             CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588          162 NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF  241 (540)
Q Consensus       162 ~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f  241 (540)
                         +...+++.+++.+++.++..+...++.+|++|++.      |++++++.+....+|++++|.+++++.+. +....|
T Consensus       647 ---s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf  716 (742)
T TIGR01299       647 ---SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPI  716 (742)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence               23344455556666666677888899999999987      99999999999999999999999988764 456677


Q ss_pred             hHhHHHHHHHHHHHHhcCccc
Q 041588          242 GIPTAFTICSIIIVAAGFPYY  262 (540)
Q Consensus       242 ~i~~~~~~~~~i~~~~~~~~~  262 (540)
                      ++++++.+++.++.+.. |+.
T Consensus       717 ~i~a~~lll~~ll~~~L-PET  736 (742)
T TIGR01299       717 LFASAALACGGLLALKL-PDT  736 (742)
T ss_pred             HHHHHHHHHHHHHHHhC-CCC
Confidence            77777766666655444 443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.29  E-value=6.4e-11  Score=125.76  Aligned_cols=180  Identities=7%  Similarity=0.059  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhh
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQS--------LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHV  112 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s--------~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~  112 (540)
                      .++..++..++..........+++.|+.+ .|.+        ....+...++..+...++.++.|+++||+ |       
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g-------  279 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-G-------  279 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------
Confidence            33445555555555555556777888764 4544        35568888888888889999999999998 9       


Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588          113 HAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA  192 (540)
Q Consensus       113 ~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~  192 (540)
                              ||+++.++.++..++..++.....                 +......+++..++.+++.+...++...+++
T Consensus       280 --------~r~~l~~~~~~~~v~~~l~~~~~~-----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~  334 (418)
T TIGR00889       280 --------IKKVMLLSLVAWALRFGFFAYGDP-----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVE  334 (418)
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHcCc-----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    999999999988888766665310                 0012345666778888888888888888999


Q ss_pred             ccCCCCChHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhc------cCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          193 DQYDEADEKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQ------KGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       193 d~~~~~~~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~------~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      |.+|+++      |++++++++ ...++|+.++|.++|++.++      .||+..|.+.+++.+++.+++.+..+
T Consensus       335 ~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       335 KEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999876      999999987 56789999999999999987      46999998877776666665555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.29  E-value=1.3e-09  Score=113.40  Aligned_cols=181  Identities=12%  Similarity=0.006  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..|......+...+++-...++++.+++++.|++.++.|.+.+.......+.+++.|.++||+ |              
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g--------------   71 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-G--------------   71 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-T--------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-h--------------
Confidence            5777778888888888888899999999999999999999999999999999999999999998 8              


Q ss_pred             cchHHHHHHHHHHHH--HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          120 GRFRTLVVFSCIYSV--GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                       .||.+++...+..+  +-.+...-  .|.++                 .-++++.++.++..+....+..+.. |.+-+
T Consensus        72 -~kK~Ll~~i~~l~~l~~pff~~v~--~pll~-----------------~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~e  130 (412)
T PF01306_consen   72 -LKKHLLWFIAILLLLFGPFFIYVF--GPLLQ-----------------SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAE  130 (412)
T ss_dssp             -TCSHHHHHHHHHHHTCHHHHHHTH--HHHHH-----------------TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------------HHHHHHHHHHHHHHHHHHcccchHH-HHHHH
Confidence             77766555433222  22222111  01100                 0123333333444443333333322 44433


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      +.+   ++.+-=+|---..+.+|.+++..++|++.+ .+-...|+++.+..++..++.+..++
T Consensus       131 r~s---r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  131 RVS---RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             HHH---HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             HHH---HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            221   123333555667888999999999999876 45567888766655555444444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=7e-11  Score=114.01  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=136.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      ......+|.+...+++..++++-+.+.-+.++++.+|+|...++.+.+...+...+..++.|.++|++ |          
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G----------  328 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-G----------  328 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-c----------
Confidence            33446789999999999999998888899999999999999999999999999999999999999998 9          


Q ss_pred             hhcccchHHHHHHHH-HHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          116 FKLQGRFRTLVVFSC-IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                           |+-..+.+.+ ...++...+.++                       ...-+.+..++|+.........++.++..
T Consensus       329 -----~n~~wv~~a~~~tl~~H~~l~Ft-----------------------~lsPy~~m~~lGLsysllAcslWP~va~~  380 (459)
T KOG4686|consen  329 -----FNLWWVASACILTLLGHSGLFFT-----------------------FLSPYTSMTFLGLSYSLLACSLWPCVASL  380 (459)
T ss_pred             -----ceehhHHHHHHHHHHHhhhHHhh-----------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhh
Confidence                 8877776665 455566666665                       22345677788888777766678888888


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC---cchhhhHhHHHH
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG---WSVGFGIPTAFT  248 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g---~~~~f~i~~~~~  248 (540)
                      .|+++      .+++++..+...|+|-.+.|+++|.+.|+-|   |--+|.+....+
T Consensus       381 vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~  431 (459)
T KOG4686|consen  381 VPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM  431 (459)
T ss_pred             CCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence            88876      9999999999999999999999999998765   444554443333

>PRK12382 putative transporter; Provisional

Probab=99.28  E-value=1.2e-10  Score=122.08  Aligned_cols=163  Identities=15%  Similarity=0.181  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHH
Q 041588           50 VAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFS  129 (540)
Q Consensus        50 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~  129 (540)
                      ++....+..+..+++.|+.+ .|++.  .+.....+..+..++.++.|++.||+ |               |||.+.++.
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g---------------~~~~~~~~~  286 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-G---------------GVKVAIVSL  286 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------CCeehHHHH
Confidence            33445666677788888865 56543  45556666677788899999999998 9               999999988


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhh
Q 041588          130 CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVF  209 (540)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~  209 (540)
                      .+..++.+++...                     .+....++..++.+++.+...+...+...|.+|+++      |++.
T Consensus       287 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  339 (392)
T PRK12382        287 LVETVGLLLLWLA---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTA  339 (392)
T ss_pred             HHHHHHHHHHHHc---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHH
Confidence            8888887766554                     124455667778888888777877788888888766      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          210 FNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       210 ~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +++++...++|..++|.+.|++.++.||+..|.+.+++.++++++.+..
T Consensus       340 ~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        340 LGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999888877777766544

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=2.5e-10  Score=120.40  Aligned_cols=178  Identities=12%  Similarity=0.013  Sum_probs=130.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...+..++....++++..++|.|++ ++|++..+++.+......+..++.++.|+++||+ |              
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~--------------  285 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-G--------------  285 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--------------
Confidence            45677777778888889999999999985 5899999999988888899999999999999998 9              


Q ss_pred             cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       ||+.+.. +.+...++.+.+......                ...+....++..++.|++.+...+ ..+...|..| +
T Consensus       286 -~~~~~~~~~~l~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~  346 (402)
T TIGR00897       286 -WMNTVRWFGGVGCGIFTLALYYIPQH----------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-K  346 (402)
T ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHc----------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-c
Confidence             8887643 333333333333222100                012344455566667776665544 3445556544 3


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      +      |++++++++.+.++|+.++|.+.+++.+..||...|++.+++.+++.++.++.
T Consensus       347 ~------~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       347 H------KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             h------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            4      89999999999999999999999999999999999998888777776665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=4.3e-09  Score=112.89  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=123.3

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588           69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL  148 (540)
Q Consensus        69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~  148 (540)
                      +++|+...+-+.+.++|.+++.++.+++|+|.||+ .               -.+.+....+.+.+..++....      
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~---------------ls~~l~~~~~~w~~~~~~~~~~------  131 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-P---------------LSKGLSVSGILWGLFGFLTAAV------  131 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-C---------------hHHHHHHHHHHHHHHHHHHHHH------
Confidence            57788888999999999999999999999999998 7               6666666666555544333333      


Q ss_pred             CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588          149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~  228 (540)
                                     ++.+.+++.++++|+.+++..|+...+++.+|.+++      |+.-+++++.+.++|.++|.+++
T Consensus       132 ---------------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA  190 (495)
T KOG2533|consen  132 ---------------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIA  190 (495)
T ss_pred             ---------------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHH
Confidence                           357889999999999999999999999999999887      99999999999999999999998


Q ss_pred             Hhhh------hccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          229 VYIQ------EQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       229 ~~l~------~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ..+.      ...||++.|++.++++++..++.++..|
T Consensus       191 ~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  191 YGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             HHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence            7753      3468999999988887766666555544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.27  E-value=4.2e-10  Score=118.09  Aligned_cols=175  Identities=14%  Similarity=0.005  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .++...+..++....+++...+++.|+.+..|++..+++.+.....+...++.+++|+++||+ |               
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~---------------  269 (390)
T PRK03545        206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-P---------------  269 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-c---------------
Confidence            344445555556666777778888999888999999999999999999999999999999997 8               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      ||+. ..+..+..++..++....                    .+...+++..++.|++.+...+...+.+.+..|+ . 
T Consensus       270 ~~~~-~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~-  326 (390)
T PRK03545        270 SGFL-LIAIALLLVCLLLLLPAA--------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A-  326 (390)
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHh--------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c-
Confidence            8765 444444444443332221                    2345556666777888777667777777777653 3 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                           |++++++++...++|..+||.++|++.|+.|++..|++.+++.+++++......
T Consensus       327 -----~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        327 -----TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence                 788899998889999999999999999999999999988888777777765443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.27  E-value=1.5e-10  Score=122.72  Aligned_cols=163  Identities=9%  Similarity=-0.117  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588           56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG  135 (540)
Q Consensus        56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~  135 (540)
                      .+++..++|.|+.+.+|.+..+.+.+.+...++..++.+++|+++||. +               +++.+..+.++..++
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~---------------~~~~l~~~~~~~~~~  302 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-R---------------PGLLMLLSTLGSFLA  302 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-C---------------cchHHHHHHHHHHHH
Confidence            456677889999888999999999999999999999999999999986 7               788888887777777


Q ss_pred             HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHH
Q 041588          136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFF  215 (540)
Q Consensus       136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~  215 (540)
                      .+++...                     .+....++..++.|++.+...+...++..|.+|++.      |++.+++++.
T Consensus       303 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  355 (417)
T PRK10489        303 VGLFGLM---------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTA  355 (417)
T ss_pred             HHHHHcc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHH
Confidence            6665543                     234455566677777777666777788889998776      8999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          216 AINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       216 ~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      ..++|..++|.+.|++.+..|+...+.+.+++.++..++.....++
T Consensus       356 ~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        356 QNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999998888877666555544444444343

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=1.3e-10  Score=123.88  Aligned_cols=153  Identities=12%  Similarity=0.071  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588           46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL  125 (540)
Q Consensus        46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i  125 (540)
                      +...++....++.+..++|.|+++.+|++..+++.....+.++..++.+++|+++||+ |               ||+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g---------------~r~~~  307 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-G---------------RRPVL  307 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chHHH
Confidence            3444556677888899999999988999999988888888888889999999999998 9               99998


Q ss_pred             HHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          126 VVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       126 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      +++.++..+.. +.+.....                  ............+.+++.+...+...++..|.+|++.     
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-----  364 (434)
T PRK15075        308 IAFTVLAILTAYPALSWLVA------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-----  364 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHc------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence            87765443322 11111110                  0112223333444555666666666778899999887     


Q ss_pred             hhhhhHHHHHH-HHHHHHHHHHHHHHhhhhccCcc
Q 041588          205 QKYVFFNWFFF-AINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       205 ~r~~~~~~~~~-~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                       |++++++.+. +..+++.++|.+.+++.|+.|+.
T Consensus       365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             8999998544 44456888999999999988854

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.26  E-value=3.2e-10  Score=118.68  Aligned_cols=160  Identities=13%  Similarity=0.176  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF  128 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~  128 (540)
                      .+.....+....+++|.|+++ .|.+..+++...+.......++.++.|+++||+ |               ||+.+..+
T Consensus       209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~---------------~~~~l~~~  271 (381)
T PRK03633        209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-G---------------RLLVLRVQ  271 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-C---------------cHHHHHHH
Confidence            344444555566788999875 699999999989888889999999999999998 9               99999888


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588          129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV  208 (540)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  208 (540)
                      ..+..++.+.+. .                       ....+.+..+.+++.+...|...+...|..|+++      ++.
T Consensus       272 ~~~~~~~~~~~~-~-----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~  321 (381)
T PRK03633        272 VFVVILGSIAML-S-----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVA  321 (381)
T ss_pred             HHHHHHHHHHHh-h-----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHH
Confidence            777776655432 1                       0122334556666666667888888888887754      566


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                      ..+.++.+.++|+.++|.++|++.|++||++.|.+.+.+.+++.+..
T Consensus       322 ~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        322 MNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            77777888899999999999999999999999988766665554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.26  E-value=9.5e-11  Score=119.82  Aligned_cols=183  Identities=15%  Similarity=0.103  Sum_probs=149.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..|.+.+..+...-+|-++..++|.|+++++|.+..+++.....+.....+..++||+||||+ |              
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-G--------------  282 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-G--------------  282 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-c--------------
Confidence            5679999999999999999999999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       .+|++++....++++...+.+...  ..            ....+...++...+.+.+..|.-+..+..++...|+++ 
T Consensus       283 -g~rv~~~~f~~~~~~~~~l~~~~~--~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-  346 (417)
T COG2223         283 -GRRVTLAVFVGMALAAALLSLFLT--GF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-  346 (417)
T ss_pred             -chhHHHHHHHHHHHHHHHHHcccc--cc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-
Confidence             999999888888888877776521  10            01133445555555666777777777788888888764 


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                            -+...++-....++|+..-|...+...+.+| +...|++...+.+++.++.+...
T Consensus       347 ------~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         347 ------TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             ------hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  5788889999999999999999999999888 99999988888777777655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.25  E-value=8.6e-11  Score=125.45  Aligned_cols=183  Identities=14%  Similarity=0.098  Sum_probs=129.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++++.+++.+..++|.|+.+.+|++..+.|.+.+++.+...+..+++|++||+...+ .++.+..     
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~-----  331 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTV-----  331 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhH-----
Confidence            6789999999999999999999999999999999999999999999999999999999999998432 3333322     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh---ccCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA---DQYD  196 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~---d~~~  196 (540)
                       ||-.=.++....+++++.+++..   .                .+.   ..+++++.++.+....+...+..   |.-|
T Consensus       332 -rkifn~i~~~~~ai~l~~l~~~~---~----------------~~~---~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap  388 (466)
T KOG2532|consen  332 -RKIFNTIAFGGPAVFLLVLAFTS---D----------------EHR---LLAVILLTIAIGLSGFNISGFYKNHQDIAP  388 (466)
T ss_pred             -HHHHHhHHHHHHHHHHHeeeecC---C----------------Ccc---hHHHHHHHHHHHHcccchhhhHhhhhhccc
Confidence             33333445555555665555542   1                111   11122222222222222223222   2222


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc---cCcchhhhHhHHHHHHHHHHHHhc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ---KGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~---~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ..       -+..+++.++..++.++++|.+.+.+..+   ..|+..|.+.+++.+++.+++.+.
T Consensus       389 q~-------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  389 QH-------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             hH-------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            22       57889999999999999999999999842   369999999999888888776554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=2.5e-10  Score=123.61  Aligned_cols=149  Identities=14%  Similarity=0.086  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588           58 AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV  137 (540)
Q Consensus        58 ~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~  137 (540)
                      .+..++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |               ||+++.++..+..++.+
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g---------------~~~~~~~~~~~~~~~~~  356 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-G---------------TRKAYVCSLLISQLLII  356 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chHHHHHHHHHHHHHHH
Confidence            4567899999889999999999999999999999999999999998 9               99998887766555544


Q ss_pred             HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588          138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI  217 (540)
Q Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  217 (540)
                      ++....                   ..+.....+..++.+....+..+..+++..|.+|++.      |++.+++++...
T Consensus       357 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  411 (496)
T PRK03893        357 PVFAIG-------------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVG  411 (496)
T ss_pred             HHhhcc-------------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhh
Confidence            333221                   0122233333333333233345667778889998776      999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588          218 NMGAIFGITVLVYIQEQKGWSVGFGIPTAF  247 (540)
Q Consensus       218 ~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~  247 (540)
                      ++|+.++|.+.|++.+..||+..+....+.
T Consensus       412 ~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        412 ALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             hHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            999999999999999999998877654443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.24  E-value=6.6e-09  Score=113.54  Aligned_cols=141  Identities=13%  Similarity=0.023  Sum_probs=124.7

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588           69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL  148 (540)
Q Consensus        69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~  148 (540)
                      +..+.+.....+..+++.++..+++++.|++|||+ |               ||++++++.++.+++.++.+++      
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-G---------------Rk~~~~~~~~~~~i~~~~~a~a------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-G---------------RKPVLLVSLLLFIIFGILTAFA------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-c---------------cHHHHHHHHHHHHHHHHHHHHh------
Confidence            45667888889999999999999999999999995 9               9999999999999998888877      


Q ss_pred             CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588          149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~  228 (540)
                                     .+...+++.|++.|++.++...+...+++|.++++.      |+.+.++ ......++.++|.++
T Consensus       169 ---------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~  226 (521)
T KOG0255|consen  169 ---------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGA  226 (521)
T ss_pred             ---------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHH
Confidence                           468899999999999999999999999999999987      8888888 777778888889999


Q ss_pred             HhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          229 VYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       229 ~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                      +++..  +||+.+++..+..++.++..
T Consensus       227 a~~~~--~Wr~~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  227 AYITR--DWRWLFWIISIPSGLFLLLW  251 (521)
T ss_pred             HHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence            99877  89999998877776665553

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=4.4e-10  Score=121.89  Aligned_cols=180  Identities=14%  Similarity=0.085  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVT-DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~-~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .|.+.+..++.....+....+.+.|+.+++|++..+.+.... ...++..++.+++|+++||+ |               
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g---------------  287 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-S---------------  287 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------------
Confidence            454554456666677777788889988889999999999874 55678889999999999998 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      |||.+.++.++..++.+.+.......                 .+...+.+...+..++.|...+...++..+..+++. 
T Consensus       288 ~~~~l~i~~~l~~l~~l~~~~l~~~~-----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~-  349 (491)
T PRK11010        288 LFRALMIFGILQGVSNAGYWLLSITD-----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF-  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence            99988877765555443332211100                 122333344445444444444566777778888776 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                           +++.+++.+...++|+.+++.++|++.|..||+..|.+.+++.+++++.....++
T Consensus       350 -----~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        350 -----SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 6778899999999999999899999999999999999888888877777665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.24  E-value=4.3e-10  Score=117.84  Aligned_cols=170  Identities=9%  Similarity=-0.070  Sum_probs=141.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++..++..++...+++...++.+.|+++ +|.+..+.+.+.+.......+..++.|++.||+ |              
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g--------------  268 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-S--------------  268 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-C--------------
Confidence            566777777788888888888999999965 999999999998888888888899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+++.++.+...+...+++..                     .+.+.+++...+.++..|...++...++.+. |+++
T Consensus       269 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~  325 (382)
T TIGR00902       269 -ARDLLLISAIACVGRWAIIGAI---------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE  325 (382)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh
Confidence             9999999999999998887765                     3466777788999999999999988888887 7655


Q ss_pred             hHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                            ++++.++++ .+..+|..++|.++|++.|+.|+ ..|.+.++..++++++.
T Consensus       326 ------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       326 ------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence                  778888876 46689999999999999999986 56666666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=2.3e-10  Score=118.18  Aligned_cols=162  Identities=17%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++.+.+..++.....+++..+++.|+.+.+|++..+++.......++..++.+++|+++||..+              
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~--------------  281 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN--------------  281 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC--------------
Confidence            556777777788888888888999999999999999999999999999999999999999998634              


Q ss_pred             cchHHHHHHHH--HHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          120 GRFRTLVVFSC--IYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       120 ~r~~~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                       ||+.......  ...++...+...   +                ..+.....+...+.+....+..+....+..|.+|+
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  341 (379)
T TIGR00881       282 -GRRGPLAVFFMALIIVSLLVYWLN---P----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK  341 (379)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHhcC---c----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence             4443332221  112222221111   0                01233344444555555545555566778899988


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF  241 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f  241 (540)
                      +.      |+++.++++...++|+.++|.+.|++.|+.||+..|
T Consensus       342 ~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       342 KA------AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             ch------hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            77      999999999999999999999999999999998765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=4.8e-10  Score=119.50  Aligned_cols=177  Identities=13%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             hHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVN-EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~-~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      ..+.+... .++....+|++..|+|.|+.+++|++..+++...++......++.+++|+++||+ |              
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-g--------------  307 (432)
T PRK10406        243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-G--------------  307 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            33444333 3344778899999999999999999999988888887778888888999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTV-SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       ||+++.++.++..+..+.+.. ...                  ..+....+....+..++.+...+...++.+|.||++
T Consensus       308 -rr~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~  368 (432)
T PRK10406        308 -RRTSMLCFGSLAALFTVPILSALQN------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ  368 (432)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence             999888776654333322211 110                  011111111111122222233345667789999998


Q ss_pred             ChHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhc
Q 041588          199 DEKEAIQKYVFFNWFFFAIN-MGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~-iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      .      |++++++.|...+ +++..+|.+.+++. .+| |...+++.++..+++.+..++.
T Consensus       369 ~------r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        369 V------RALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             c------cchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            8      9999999776555 44556888888664 445 6666665556566665554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.23  E-value=2.9e-10  Score=122.27  Aligned_cols=185  Identities=12%  Similarity=-0.008  Sum_probs=123.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc-hhhhhhhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPAL-KHVHAIFK  117 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~-~~~~~~~~  117 (540)
                      ++.+|.+.+..++....++.+..++|.|+.+.+|++..+++....++.++..++.+++|+++||+ ++.+. +...    
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~----  334 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTA----  334 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHH----
Confidence            46778888999999999999999999999999999999999999999999999999999999997 51110 0000    


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         + +.+..+......+..++..... .                 .+....++.+.+.+.+.++..+.......|..|.
T Consensus       335 ---~-~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  392 (465)
T TIGR00894       335 ---A-RKIFNGIGGLGPGIFAYALPYL-S-----------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR  392 (465)
T ss_pred             ---H-HHHHHHHHHHHHHHHHHHHHHc-C-----------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence               0 1111111111111111111100 0                 1122233334444444444444444445555544


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc---CcchhhhHhHHHHHHHHHHHHh
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK---GWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~---g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                       .      ++...++.+...++|+.++|.+.|++.+..   +|..+|.+.++..+++.++...
T Consensus       393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence             3      899999999999999999999999987653   3888888887777777666544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.21  E-value=6.3e-11  Score=104.07  Aligned_cols=132  Identities=19%  Similarity=0.271  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCC
Q 041588           84 DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNG  163 (540)
Q Consensus        84 ~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (540)
                      .+..+..++.++.|+++||+ |               ||+++..+..+..++.+.+...                     
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g---------------~~~~~~~~~~~~~~~~~~~~~~---------------------   48 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-G---------------RKPVLLVGLFIFVLSTAMFALS---------------------   48 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-c---------------hhHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            34556778899999999998 9               9999999988888887777654                     


Q ss_pred             chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhH
Q 041588          164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGI  243 (540)
Q Consensus       164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i  243 (540)
                      .+...+++.+.+.+++.+...+...++..|.+|+++      |++..++.+...++|..++|.+.+++.+..||+..|++
T Consensus        49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  122 (141)
T TIGR00880        49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF  122 (141)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence            235667777888999988888899999999999876      89999999999999999999999999998899999988


Q ss_pred             hHHHHHHHHHHHHhc
Q 041588          244 PTAFTICSIIIVAAG  258 (540)
Q Consensus       244 ~~~~~~~~~i~~~~~  258 (540)
                      ..+..+++.+.....
T Consensus       123 ~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       123 LAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            777666665555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=1e-09  Score=117.77  Aligned_cols=187  Identities=14%  Similarity=0.056  Sum_probs=150.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +.|.....++..++.+-+...+.+....|.++++|++..+...+..+..+.+.++.+++|++.||+ |            
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g------------  345 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-G------------  345 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence            346667777888888899999999999999999999999999988899999999999999999998 9            


Q ss_pred             cccch--HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          118 LQGRF--RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       118 ~~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                         -|  ++++++.+++.+..+.-.+ +..+..            ..-.+.+.+++.-++.|+..|..++..-++.+++.
T Consensus       346 ---~k~~~~l~~~l~~~~~i~~~g~~-G~~~~~------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li  409 (477)
T PF11700_consen  346 ---PKTKRTLLISLILWIIIPLYGLF-GFWPSF------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI  409 (477)
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHH-Hhhhcc------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence               77  8888877665332222221 111110            01124556777777899999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      |+++      .+.+|++|.+..-..+.+||.+.|.+.+.+| .|.++....++.+++++++....
T Consensus       410 P~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  410 PPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             CCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            9987      7899999999999999999999999999887 88999888888788877775543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=4.1e-10  Score=119.32  Aligned_cols=165  Identities=11%  Similarity=0.015  Sum_probs=116.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.+|...+..++....++++.+++|.|+++ ..|.+..+++...........++.+++|+++||+ |             
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~-------------  307 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-K-------------  307 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-C-------------
Confidence            456777788888888999999999999977 3477888889989999999999999999999998 8             


Q ss_pred             ccchHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          119 QGRFRTL-VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       119 ~~r~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                        ||+.. .+..++..++..+. ...                    .+....+.+..+.++|.....+.......|.+|+
T Consensus       308 --~r~~~~~~~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  364 (412)
T TIGR02332       308 --ERKHHTALPYLFAAAGWLLA-SAT--------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL  364 (412)
T ss_pred             --ccHHHHHHHHHHHHHHHHHH-Hhc--------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccch
Confidence              77753 33333333333222 111                    0111222223333333333223333444566776


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAF  247 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~  247 (540)
                      +.      |++++++.+...++|+.++|.+.|.+.+..| |+.+|++.++.
T Consensus       365 ~~------~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       365 QA------RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HH------HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            65      9999999999999999999999999999875 99998766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.19  E-value=7.5e-10  Score=117.99  Aligned_cols=186  Identities=13%  Similarity=0.032  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +..++..+......+.+..+++.++ +++|++..+++.......++..++.+++|+++||+ |               ||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~---------------~~  349 (481)
T TIGR00879       287 LGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-G---------------RR  349 (481)
T ss_pred             HHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ch
Confidence            3333444444444444445555554 56899998888888888889999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+.++.++..++.+++..........          .........+....++.+....+..+....+..|.+|++.   
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---  416 (481)
T TIGR00879       350 PLLLIGAAGMAICLFVLGILGASFVTG----------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL---  416 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCC----------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH---
Confidence            999999888888777776432111000          0000012222222222222222334666777799999876   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                         |+++.++.+...++|++++|.+.+++.++.||...|++.+++.+++.++..+..++
T Consensus       417 ---~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       417 ---RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence               89999999999999999999999999998999999988877777766665554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01272 gluP glucose/galactose transporter

Probab=99.19  E-value=7.4e-10  Score=112.83  Aligned_cols=162  Identities=10%  Similarity=0.014  Sum_probs=123.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +..+...+..++...+--++..|++.|+.+.  +|++..+++...+.+.++..++.+++++++||+ |            
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g------------  206 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-S------------  206 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence            4455555555555556667788999999854  799999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ++|++.++..+.+++.+++....                     +.. ...+..+.+++.+...|...+...+.+|+
T Consensus       207 ---~~~~l~~~~~l~~~~~~l~~~~~---------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~  261 (310)
T TIGR01272       207 ---QGRYLAFNAFLAVLLSIGAALTH---------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR  261 (310)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcC---------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence               99999888877777665444331                     111 23456678899999999998888888876


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF  247 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~  247 (540)
                      +..     +++  ++. ....+|+.+.|.+.|++.|..|.+.+|++..++
T Consensus       262 ~~~-----~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       262 HTS-----QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hhh-----hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            531     333  343 466799999999999999999988888754444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=4e-10  Score=121.00  Aligned_cols=172  Identities=9%  Similarity=-0.010  Sum_probs=133.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY-LGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~-~G~~~~~~~~~~~~~  118 (540)
                      +.++..+...++..++++....+++.|+.+ +|++..+++.+.++..++..++.+++|+++||. .+             
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~-------------  306 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR-------------  306 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------------
Confidence            556777777778888888888999999864 799999999999999999999999999999984 13             


Q ss_pred             ccchHHHHHHH--HHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          119 QGRFRTLVVFS--CIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       119 ~~r~~~i~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                        +++...++.  ++..++.+++...                     .+.+.+++..++.|++.+...++..++..|.+|
T Consensus       307 --~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~  363 (455)
T TIGR00892       307 --PHVQYLFSFALLFNGLTHLLCALA---------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG  363 (455)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence              343333332  2233333333332                     235566777888999999888999999999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHHHHH
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~~i~  254 (540)
                      +++      +++.+++++...++|..++|.++|++.+.. +|+..|++.+++.+++.+.
T Consensus       364 ~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       364 AQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            766      899999999999999999999999999887 4999999887776655543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=6.2e-11  Score=114.37  Aligned_cols=155  Identities=10%  Similarity=0.165  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           43 PFIIVNEVAERLAFFAI--AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~--~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..+.+.++...-+|+..  -.-+..++..+.+...++..++.+++..-..+.+.+|||+-||.+|               
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fg---------------  108 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFG---------------  108 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhh---------------
Confidence            33444444443333322  2345677777888888888899999999999999999999999999               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      -|...++-++...+|.+.++.-..                  .+..+.+..+|++.|+|.-....+...+..-+|..++ 
T Consensus       109 ir~gtii~~~fv~~GqliFa~Ggi------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE-  169 (459)
T KOG4686|consen  109 IRLGTIILCIFVFLGQLIFAAGGI------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE-  169 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhchH------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc-
Confidence            777777777777788887765421                  1357889999999999988777788888899998887 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG  236 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g  236 (540)
                           ....|+++-...-+|...-..+.+++.++.|
T Consensus       170 -----Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  170 -----LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             -----ccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence                 8889999888888888877777888877654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=3.2e-09  Score=109.61  Aligned_cols=181  Identities=14%  Similarity=0.121  Sum_probs=143.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +++.++......++...+.|...+|+..|+++..|++.+..+++...+.++..++.+++|+++||  +            
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~------------  274 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--G------------  274 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--c------------
Confidence            34677888999999999999999999999999999999999999999999999999999999999  7            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         .|+++.....+..+.++.+.+..                    .+.....+..++.++..+........-.++.. +
T Consensus       275 ---~~~~l~~~~~l~a~~~l~l~~~~--------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p  330 (394)
T COG2814         275 ---PRRALIAALLLLALALLALTFTG--------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-P  330 (394)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C
Confidence               89999888888888777777663                    23344455555555555443333333334422 2


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY  262 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~  262 (540)
                      ++      ++.+.+++..+.|+|..+|..++|.+.|+.|+....+++++..++++++.+...++.
T Consensus       331 ~~------~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         331 DA------ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             Cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33      678888888899999999999999999999999999999999888888776655443

>PTZ00207 hypothetical protein; Provisional

Probab=99.14  E-value=2.5e-09  Score=116.86  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHH
Q 041588           57 FAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGM  136 (540)
Q Consensus        57 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~  136 (540)
                      |++..+ ...+.+++|++..+.+.+.++... ..++.+++|+++||+ |               +|++++++.+++.+|+
T Consensus        44 y~fsv~-s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G---------------~R~vllig~ll~~iG~  105 (591)
T PTZ00207         44 YAFNLI-SGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-G---------------PRPIFVLSMTVFCLGT  105 (591)
T ss_pred             HHHHHH-HHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHH
Confidence            444433 446788999999999988877443 345677789999998 9               9999999999999999


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588          137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA  216 (540)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~  216 (540)
                      ++++++... ..              ..+.+.+++.+++.|+|.+...+.......++||+ +      |+.+.++...+
T Consensus       106 ll~ala~~~-~i--------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~  163 (591)
T PTZ00207        106 LLFALTFQE-VI--------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTF  163 (591)
T ss_pred             HHHHHHhcc-cc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHH
Confidence            999886210 00              13577888899999999988888888888999974 3      89999999999


Q ss_pred             HHHHHHH-HHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588          217 INMGAIF-GITVLVYIQEQKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       217 ~~iG~~i-~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~  254 (540)
                      .++|+.+ +++..+++.+  +|+..|++.++..++..++
T Consensus       164 ~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        164 TGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Confidence            9999975 5655666553  5777776655554443333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.13  E-value=3.7e-07  Score=98.19  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588          444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN  523 (540)
Q Consensus       444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~  523 (540)
                      +.-.-..+..-++..+.+|++..+...|++.++.-..+++||.+.+++...|+              ...+-++.+.++.
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--------------~~r~g~~~l~~lf  457 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--------------SQRYGFLFLLVLF  457 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhHHHHHHHHH
Confidence            33334455567799999999999999999999999999999999999987763              1224567777777


Q ss_pred             HHHHHHHHHH
Q 041588          524 GLNFFVYFWV  533 (540)
Q Consensus       524 ~~~~~~y~~~  533 (540)
                      +++++++..+
T Consensus       458 ~~gl~ll~~v  467 (477)
T PF11700_consen  458 LIGLILLFFV  467 (477)
T ss_pred             HHHHHHHhhc
Confidence            7777665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.10  E-value=3.7e-09  Score=112.08  Aligned_cols=145  Identities=14%  Similarity=0.036  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588           54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS  133 (540)
Q Consensus        54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~  133 (540)
                      ...+.+..++|.|+.+ .|++..+.+.......++..++.+++|+++||+ |               ||+++..+.++..
T Consensus       245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~---------------~~~~~~~~~~~~~  307 (426)
T PRK12307        245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-G---------------LKKTFSIGLLMSF  307 (426)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------cHHHHHHHHHHHH
Confidence            3444567788999876 699999899888888889999999999999998 9               9999988887766


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHH--hcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588          134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIAL--GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN  211 (540)
Q Consensus       134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  211 (540)
                      ++.+++....   .                ...  ..+...+.++  +..+..+..+.+..|.+|++.      |+++++
T Consensus       308 ~~~~~~~~~~---~----------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  360 (426)
T PRK12307        308 LFIFPLFRIP---Q----------------DNY--LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTG  360 (426)
T ss_pred             HHHHHHHHHc---c----------------ccH--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------Hhhhhh
Confidence            6555444321   0                111  1222223332  223334556677889999876      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588          212 WFFFAINMGAIFGITVLVYIQEQKGWSVGFG  242 (540)
Q Consensus       212 ~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~  242 (540)
                      +.+...++|+.++|.+.|++.+..|+....+
T Consensus       361 ~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        361 LIYNLAATSGTFNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999999888665433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=4.7e-09  Score=109.95  Aligned_cols=174  Identities=12%  Similarity=0.002  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..|......++.....+....+++.|+.+.+|++..+++.+.....++..++.++.|+++||+ |               
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~---------------  263 (382)
T PRK10091        200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-S---------------  263 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-C---------------
Confidence            345554444555555555567778888888999999999999999999999999999999998 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh-ccCCCCC
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA-DQYDEAD  199 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~-d~~~~~~  199 (540)
                      +++.+.++..+..++.+++....                    .+....++...+.++|.++..+....... +..+++.
T Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (382)
T PRK10091        264 PLRIAAVTDFIIVLALLMLFFFG--------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL  323 (382)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH
Confidence            99999988887777776554321                    11233334444455554444443333333 3333222


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHHHHHHHHHHHhc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                            ++..  ..+...++|..+||.++|++.|. .||+..+.+.++..++++......
T Consensus       324 ------~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        324 ------LGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             ------HHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence                  3333  33566789999999999999885 679999988877766655554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.10  E-value=1.8e-09  Score=116.65  Aligned_cols=174  Identities=14%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |               
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~---------------  316 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-A---------------  316 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-H---------------
Confidence            346555555555556667778899999989999999999999999999999999999999998 7               


Q ss_pred             ch-----H--HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588          121 RF-----R--TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD  193 (540)
Q Consensus       121 r~-----~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d  193 (540)
                      ||     +  .+.+..++..++.+++...                     .+.....+..++.+++.+...+...++..+
T Consensus       317 ~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  375 (476)
T PLN00028        317 RRFGMRGRLWALWIVQTLGGVFCIWLGRA---------------------NSLGAAIVVMILFSIFVQAACGATFGIVPF  375 (476)
T ss_pred             HhcCcchhHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcc
Confidence            54     2  2222222222222222111                     122333334444455444334444455555


Q ss_pred             cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      ..| +.      ++...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus       376 ~~~-~~------~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        376 VSR-RS------LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             cCh-hh------chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            443 23      888888887777888877776644 22344699999988888777777766654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.10  E-value=2.1e-09  Score=113.12  Aligned_cols=172  Identities=12%  Similarity=0.087  Sum_probs=124.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREM---HQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      |.++..++..++....+.....+++.|+.+.+   +.+....+...+...+...++.+..|++.||+ |           
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g-----------  282 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-G-----------  282 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------
Confidence            34455555555555555556667888887765   45556677778877888888889999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          ||+.+.++.++..++..+....                     .+...+++...+.+++..........+..+..+
T Consensus       283 ----~~~~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  337 (396)
T TIGR00882       283 ----AKNALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFD  337 (396)
T ss_pred             ----cchhHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                9999999988888877665544                     234455666777777765444444445566666


Q ss_pred             CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588          197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~  254 (540)
                      ++.      +++..+. ++.+..+|+.++|.++|++.|..||+..|.+.+++.++..+.
T Consensus       338 ~~~------~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       338 VRL------SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             cce------EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            554      6666666 677889999999999999999999999998877766555444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.08  E-value=3.3e-09  Score=109.11  Aligned_cols=155  Identities=10%  Similarity=0.040  Sum_probs=127.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHH-HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIA-VNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~-~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.++..+...++....+++.. .+.|.|..+.+|.+..+.+.......++..++.+++|+++||+ |             
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------------  275 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-K-------------  275 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence            455666666677777777666 7788888877999999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        |++.+..+..+..++...+....                    .+...+++..++.+++.+...+...++..|.+|++
T Consensus       276 --~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  333 (365)
T TIGR00900       276 --RMALMTGAIFVIGLAILVVGLTP--------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE  333 (365)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHhhc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence              99998888776666666655541                    02455667778889999888888999999999887


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG  236 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g  236 (540)
                      +      |++.+++++...++|+.++|.++|++.|..|
T Consensus       334 ~------~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       334 L------LGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6      9999999999999999999999999988654

>PRK10504 putative transporter; Provisional

Probab=99.07  E-value=5.7e-09  Score=112.36  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=122.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+...++..++...++.....+.|.|++..+|.+..+++.......+...++.++.|+++||+ |              
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g--------------  325 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-G--------------  325 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            4556666777777777766667788888888999999999888877777778889999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++..+..++..++.....                  ......+.+..++.|++.+...+....+..+.+|+++
T Consensus       326 -~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  386 (471)
T PRK10504        326 -YRRVLVATTLGLALVSLLFMLVAL------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL  386 (471)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhccc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh
Confidence             999999888877777666554310                  0123333445566777777777778888888888766


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGW  237 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~  237 (540)
                            ++.+++++++...+|..+|+.++|.+.+..|+
T Consensus       387 ------~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        387 ------ASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  89999999999999999999999988776665

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.07  E-value=1.1e-08  Score=107.84  Aligned_cols=173  Identities=13%  Similarity=-0.066  Sum_probs=126.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++...+..++....++....+.|.|+.+++|++..+.+.......++..++.++.|+++||+ |              
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~--------------  279 (406)
T PRK15402        215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-P--------------  279 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------------
Confidence            4456555555555566666667788999889999999888877777777888999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+.+.++.++..++..++......                ...+...++++.++.++|.+...+.......+..+ ++
T Consensus       280 -~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~  341 (406)
T PRK15402        280 -LRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS  341 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc
Confidence             9999999888887777777654210                01234556677788888888766665555433322 33


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICS  251 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~  251 (540)
                            +++..+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus       342 ------~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        342 ------KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence                  8999999999999999999999999988877665444444443333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=8.1e-09  Score=109.89  Aligned_cols=185  Identities=9%  Similarity=-0.014  Sum_probs=131.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..|.+.+..++..-+|-++..++|.|+++.+  +...+.....+..+...+..++||++|||+ |              
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G--------------  314 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-G--------------  314 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-C--------------
Confidence            45688888888888888888889999998865  333333334455677888999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC-
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA-  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~-  198 (540)
                       ++|++.++.++..++...+....  |.             .+..+...+.++.+.+.++.|.-...+..++.+.||++ 
T Consensus       315 -~~~vl~~~~i~~~i~~~~~~l~l--p~-------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~  378 (462)
T PRK15034        315 -GVRVTLINFIFMAIFSALLFLTL--PG-------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQIT  378 (462)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHh--cc-------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhh
Confidence             99999999887777654433331  11             01134555666665666777777777777888888741 


Q ss_pred             ---------C-----hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHh
Q 041588          199 ---------D-----EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       199 ---------~-----~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~  257 (540)
                               +     ...+++-+...++-.....+|+.+-|.+.|...+.+| +..+|+...+..++++++-+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        379 IYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             hhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                     0     0111235677888888889999999988888777655 888898888877777666544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.07  E-value=7.2e-09  Score=108.75  Aligned_cols=176  Identities=13%  Similarity=0.029  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      ..+..+...++...+.....++.+.|+.+ .|++.++.+.+...... ...++.+++|+++||+ |              
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g--------------  272 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-G--------------  272 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-h--------------
Confidence            45556666677777777777888899875 79999999998887754 5566788999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC-C
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE-A  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~-~  198 (540)
                       +|+++..+..+..+..+....... ...              .......+....+.+++.|...+...+...+..++ +
T Consensus       273 -~~~~l~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (390)
T TIGR02718       273 -LWRTFILGVGLAGSLALLWFAQAA-FWL--------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD  336 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHH-ccc--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence             999998877655333222221110 000              01122333333444555565556666666666655 4


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~  254 (540)
                      .      +++.+++++...++|..++|.++|++.|..||+..|.+.+++.+++.+.
T Consensus       337 ~------~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       337 Q------AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            3      7899999999999999999999999999999999998776665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00896 CynX cyanate transporter

Probab=99.06  E-value=8.7e-09  Score=106.58  Aligned_cols=156  Identities=16%  Similarity=0.085  Sum_probs=118.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+.+.+..++....++++..++|.|+++ .|++..+++.+.+...++..++.++.|+++||+-+              
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~--------------  261 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKD--------------  261 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--------------
Confidence            445666666667778888888999999975 79999999999999999999999999999999834              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++.++..++.+.+....                     +.... ...++.|++.|...+...+...+..++++
T Consensus       262 -~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  318 (355)
T TIGR00896       262 -QRGIVAVLAVLQLVGLCGLLFAP---------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA  318 (355)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHhh---------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH
Confidence             56667777777777776665541                     11111 23457788888888877777666554432


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WS  238 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~  238 (540)
                           +++..+++.+...++|+.++|.+.|++.|++| |.
T Consensus       319 -----~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       319 -----QAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence                 26778888888889999999999999999876 44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.06  E-value=7.7e-09  Score=108.31  Aligned_cols=168  Identities=10%  Similarity=-0.042  Sum_probs=126.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++..++..++....+....++++.|+. +.|++..+.+.+.+.......+..++.|++.||+ |              
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~--------------  268 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-S--------------  268 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--------------
Confidence            55666666666666777777788899995 5899999999988888888888889999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+.+..+.+...++.+++...                     .+.+.+++..++.|++.+...+....+..++ ++++
T Consensus       269 -~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~  325 (382)
T PRK11128        269 -ARDLLLLSAICGVVRWGLMGST---------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE  325 (382)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh
Confidence             9999999888888877666544                     2456667778888888887777776666664 3332


Q ss_pred             hHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i  253 (540)
                            +++..++++ ....+|..++|.++|++.|..|+. .|+..+++.+++++
T Consensus       326 ------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~  373 (382)
T PRK11128        326 ------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF  373 (382)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence                  566777765 456778889999999999998874 55555544444433

>TIGR00895 2A0115 benzoate transport

Probab=99.05  E-value=2.7e-09  Score=111.09  Aligned_cols=148  Identities=16%  Similarity=0.081  Sum_probs=114.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+.+.+..++....++.+..++| |+.+++|.+..+++.......++..++.+++|+++||+ |              
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--------------  313 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-G--------------  313 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--------------
Confidence            3445555566677778888888888 66678999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+....+...++.++....                     .+....++..++.+++.++..+...++.+|.+|++.
T Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  371 (398)
T TIGR00895       314 -PRVTALLLLLGAVFAVLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI  371 (398)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence             8855444433333333322211                     124455666778888888888899999999998876


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYI  231 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l  231 (540)
                            |++++++++...++|+.++|.++|++
T Consensus       372 ------~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       372 ------RATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                  99999999999999999999999876

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.03  E-value=5.2e-07  Score=90.98  Aligned_cols=171  Identities=15%  Similarity=0.190  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           42 SPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        42 ~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      +..++++.+=-|...-++-+.+ .-+.+++|+|.+.++++.+++.....++.+++.+++.|+ |               -
T Consensus        14 i~gIvlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g---------------~   76 (395)
T COG2807          14 LAGIVLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-G---------------E   76 (395)
T ss_pred             HHHHHHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h---------------h
Confidence            3344444455566666555544 447789999999999999999999999999999999998 9               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      .+.+..+.++..+|..+=...                      +...++.+..+.|.|.+......++++-+.||++   
T Consensus        77 er~l~~~Llli~~G~~iR~~~----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~---  131 (395)
T COG2807          77 ERSLFLALLLIAAGILIRSLG----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR---  131 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc---
Confidence            999999999888887775543                      3567888899999999999999999999999886   


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-CcchhhhHhHHHHHHHHHHHHhc
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK-GWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~-g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                          .+...+.|..+.++|+.+++.++..+.++. ||+.+..+-+...++++++++.-
T Consensus       132 ----~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         132 ----VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             ----hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence                577889999999999999999999888877 79999988888777777776543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=6.9e-09  Score=110.33  Aligned_cols=162  Identities=15%  Similarity=0.087  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.+++..++...+++....+.+.|++..+| +....+.+.....+...++.++.|+++||+ |              
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g--------------  285 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-G--------------  285 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            566667777777778877766666666665566 455666777777888889999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++.++.+++.+.+.+..                    .+...+++..++.+++.+...+...++.+|..|.++
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (437)
T TIGR00792       286 -RKILFAGGILLMVLGYLIFFFAG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE  344 (437)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHcc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             99999999888888777665531                    123455566677888888888888999999876432


Q ss_pred             hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      .+ ..+.++..+++++++..+|..+++.+.|++.+..||.
T Consensus       345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            11 1123688899999999999999999999998887774

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.01  E-value=2.7e-09  Score=116.00  Aligned_cols=174  Identities=16%  Similarity=0.104  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588           47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT------------HVTDWIGAAYVLTILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      ...++..+.+|++..++|.+++ +.|++..+++.            ...+..++..++.+++++++||+ |         
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-g---------  363 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-G---------  363 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c---------
Confidence            3445556788888888888885 67886543211            12223334555778899999998 9         


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                            ||++++++.++..++..++.......                 .....+........++..+..+....+.+|.
T Consensus       364 ------RR~~l~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~  420 (502)
T TIGR00887       364 ------RKPIQLMGFFILTVLFFVLGFAYNHL-----------------STHGFLAIYVLAQFFANFGPNATTFIVPGEV  420 (502)
T ss_pred             ------chhHHHHHHHHHHHHHHHHHHHHHhc-----------------chhHHHHHHHHHHHHHhcCCCchhhhhhhcc
Confidence                  99999998887777766665432100                 0111111111122222223345666778999


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------cCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ----------KGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~----------~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      +|.+.      |+++.++.+....+|++++|.+.+++.+.          .++...|++.+++.+++.+.. +..|+
T Consensus       421 ~p~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE  490 (502)
T TIGR00887       421 FPTRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE  490 (502)
T ss_pred             CchhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence            99988      99999999999999999999999998874          334556666666555554443 33344

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.00  E-value=1.5e-08  Score=104.55  Aligned_cols=139  Identities=15%  Similarity=0.097  Sum_probs=106.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 041588           73 QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPA  152 (540)
Q Consensus        73 ~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  152 (540)
                      ++....+.+..+..++..+++++.||++|++ |               ||+++...++++++++++.+++.         
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-G---------------RK~vYG~~liImIi~t~~~~~s~---------  135 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-G---------------RKKVYGKELIIMIICSALSGLSV---------  135 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------------chhhhhHHHHHHHHHHHHhccCC---------
Confidence            5677788889999999999999999999998 9               99999999999999998665542         


Q ss_pred             CCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh----hHHHHHHHHHHHHHHHHHHH
Q 041588          153 CKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV----FFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~----~~~~~~~~~~iG~~i~p~v~  228 (540)
                           |.++...-...+..-|.++|+|.|+=.|...++.+|.-.++.      |+.    .|+...+++-.|+.++.++.
T Consensus       136 -----~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  136 -----GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             -----CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHH
Confidence                 222333456778888999999999999999999998876655      555    45556777777777777666


Q ss_pred             Hhhhhcc-----------CcchhhhHhHHH
Q 041588          229 VYIQEQK-----------GWSVGFGIPTAF  247 (540)
Q Consensus       229 ~~l~~~~-----------g~~~~f~i~~~~  247 (540)
                      +-.....           =||..|.+.++.
T Consensus       205 ~~fe~~~~~~~~~~~ld~vWRl~~glg~vp  234 (538)
T KOG0252|consen  205 AIFEKIFNGPSTYPHLDGVWRIIFGLGAVP  234 (538)
T ss_pred             HHHhccCCCCCCchHHHHHHHHHHHHHHHH
Confidence            5443211           288877655444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.99  E-value=1.1e-08  Score=104.84  Aligned_cols=177  Identities=12%  Similarity=0.060  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+..-+++.++.+=+-.++.+....|...++|++..+..++...-...+.++++++|+|+||+ |              
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g--------------  316 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-G--------------  316 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            4556666777777777778888889999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       -|++++++.+++.+..+......                     ....+++.-++.|+..|+.++..-++.++..|+++
T Consensus       317 -~k~vl~~~lvi~~~~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k  374 (438)
T COG2270         317 -SKPVLMIGLVILSIAALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK  374 (438)
T ss_pred             -CceeehHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence             89999999988777666555442                     12334455568899999999999999999999987


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                            -+++|++|....-.++.+||.+.+.+.+.+| -|.++....+...+++++++..+
T Consensus       375 ------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         375 ------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             ------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence                  6889999999999999999999999988776 67777666666666666655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.99  E-value=1.1e-08  Score=110.98  Aligned_cols=155  Identities=12%  Similarity=-0.003  Sum_probs=127.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+....+..++....+++...++|.|+++.+|++..+++.......+...++.+++|++.||+ |              
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g--------------  323 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-G--------------  323 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            4556666777777888888888999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+..+.++..++..++.....                  ..+....+...++.|+|.|...+.......+..|+++
T Consensus       324 -~~~~~~~g~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~  384 (495)
T PRK14995        324 -LRLVATGGMALSALSFYGLAMTDF------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK  384 (495)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHhcC------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh
Confidence             999998888888777776654321                  0123445567778899999888777777778888776


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                            ++.+.++++...++|+.+|+.+.+.+.++
T Consensus       385 ------~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        385 ------AAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             ------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  88999999999999999999999988653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.99  E-value=9e-09  Score=110.93  Aligned_cols=156  Identities=11%  Similarity=0.035  Sum_probs=127.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++...+..++..+.+++...++|.|+++.+|++..+++.......++..++.+++|+++||+ |              
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~--------------  319 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-D--------------  319 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C--------------
Confidence            4556667777788888888889999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++..+..++..++..... +                ..+...+....++.|+|.+...+.......+.+|+++
T Consensus       320 -~~~~~~~g~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  381 (485)
T TIGR00711       320 -PRKLVTIGLILYAVGFYWRAFTFT-P----------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK  381 (485)
T ss_pred             -cHHHHHHHHHHHHHHHHHHhccCC-C----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence             999999998888888777663210 0                1234455566778888888777666676777777765


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                            ++++.++++...++|+.+|+.+.+.+.++
T Consensus       382 ------~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       382 ------IARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  89999999999999999999999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.97  E-value=4.6e-08  Score=105.35  Aligned_cols=166  Identities=10%  Similarity=0.003  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHH
Q 041588           56 FFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVG  135 (540)
Q Consensus        56 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~  135 (540)
                      ++.+..+.|.++ +++|++...+........+...++.+++|+++||+ |               ||++++.+.++..++
T Consensus       287 ~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g---------------~r~~~i~~~~~~~v~  349 (479)
T PRK10077        287 INVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G---------------RKPLQIIGALGMAIG  349 (479)
T ss_pred             hhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------ChHHHHHhHHHHHHH
Confidence            344444445544 56888877777766667778889999999999998 9               999999999988888


Q ss_pred             HHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCC-CccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588          136 MVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRD-IKPCVSSFGADQYDEADEKEAIQKYVFFNWFF  214 (540)
Q Consensus       136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~-~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  214 (540)
                      .+++......+                .. ......++.+.+.+.+. ..|...++.+|.+|++.      |++++++.+
T Consensus       350 ~~~l~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~  406 (479)
T PRK10077        350 MFSLGTAFYTQ----------------AP-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAV  406 (479)
T ss_pred             HHHHHHHHhcC----------------cc-cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHH
Confidence            87776542100                01 11233344444444443 34677889999998876      999999988


Q ss_pred             HHHHHHHHHHHHHHH------hhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          215 FAINMGAIFGITVLV------YIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       215 ~~~~iG~~i~p~v~~------~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      ...++|..+++.+.+      ++.+..+|+..|++.++..+++.++.+...++
T Consensus       407 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             HHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence            888888887755544      44567889888888766666665555444443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=3.4e-08  Score=102.73  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=116.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+...+...+....++....+.|.|+.+++|.+..+++.+.....+...++.+++|+++||+ |              
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~--------------  270 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-G--------------  270 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------------
Confidence            3445555555566667777778889999989999999999999989999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+..+..+..++.+++......+                ......++....+.+++.+...+.......|.+|+ +
T Consensus       271 -~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~  332 (385)
T TIGR00710       271 -AKSLLRMGLILFAVSAVLLEITAILG----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V  332 (385)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c
Confidence             99999988877777766665542100                01233444556677788887778777777787763 3


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFG  242 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~  242 (540)
                            +++..++++.....++.+.+.+.+.+.+..+|...+.
T Consensus       333 ------~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       333 ------AGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             ------chHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence                  7888888777665544444444556655555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.95  E-value=4.7e-08  Score=103.13  Aligned_cols=174  Identities=15%  Similarity=0.158  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWI-GAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      .++.+++..++.....+....+.+.|+.+++|++..+.+.+..... +...++.+++|+++||+ |              
T Consensus       210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g--------------  274 (402)
T PRK11902        210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-G--------------  274 (402)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence            3444444444444433333344556777889999999988876554 45788899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHH----HHHHhcCCCccchhhhhhccC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALG----LIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~g~~~~~~~~~~~d~~  195 (540)
                       ||+.+.++..+..+..+.+......+                 .+.+.++++..    ..+++.+...+....+..+.+
T Consensus       275 -~~~~l~~~~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (402)
T PRK11902        275 -LYRSLMLFGVLQAVSNLGYWVLAVTP-----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF  336 (402)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence             99988877766655544333221111                 12233343333    344445555566666666666


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      |.++          ++++....++|..+++.++|++.|..||+..|.+.+++.++++++...
T Consensus       337 ~~~~----------~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        337 SATQ----------YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             cHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            5432          345555556777766678999999999999998887777776655533

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=2.5e-08  Score=106.55  Aligned_cols=168  Identities=14%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYL-VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.++...+..++.....++...+++.|+ ++.+|++..+++.....+.++..++.+++|+++||+ |             
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g-------------  323 (438)
T PRK10133        258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A-------------  323 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-------------
Confidence            3344445555666677777778889996 567899999999999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        |||++..+.++.+++.++..+..                     .. ..+....+.+++.+...|...+...+.++++
T Consensus       324 --~~~~l~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~  379 (438)
T PRK10133        324 --PHKVLAAYALIAMALCLISAFAG---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD  379 (438)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHcC---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence              99999888777666655544331                     11 2245667889999999999999999988764


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSII  253 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i  253 (540)
                      .       +.+-++... ..+|+.++|.+.|++.|..| -+..|.+..++.+..++
T Consensus       380 ~-------~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        380 T-------KYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             h-------ccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            2       333333332 33678888899999999887 67888766555444333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.95  E-value=2.8e-08  Score=105.84  Aligned_cols=164  Identities=16%  Similarity=0.181  Sum_probs=134.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+..+++..++..+++....+.++.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |              
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-g--------------  288 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-G--------------  288 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-c--------------
Confidence            56677788888888888888888888888888877 4556777778888899999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +||++..+.++.+++.+++.+...                   .+.+.+++..++.+++.+...+...++.+|..+.++
T Consensus       289 -k~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e  348 (428)
T PF13347_consen  289 -KKKVYIIGLLLAALGFLLLFFLGP-------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDE  348 (428)
T ss_pred             -ceeehhhhHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHH
Confidence             999999999999999988887721                   356778888889999999999999999999998654


Q ss_pred             hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcch
Q 041588          200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSV  239 (540)
Q Consensus       200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~  239 (540)
                      .+ .+++.+..++.+.+...+|..+++.+.+.+.+..||..
T Consensus       349 ~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~  389 (428)
T PF13347_consen  349 WKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA  389 (428)
T ss_pred             HhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence            32 12235778888999999999999999998877666553

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.4e-06  Score=91.99  Aligned_cols=181  Identities=12%  Similarity=0.104  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      ..--...+..++.+..+..++..|.++..|++...+|.+..+.-+.-.+.-|+.|.++||. .          -+-..||
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t-~----------~r~GrfR   83 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRT-R----------SRWGRFR   83 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccc-c----------ccccccc
Confidence            4455677888888888999999999999999999999999999999999999999999975 2          0111244


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +-++++.+..++..+++..+..  .             ..+......++.-.+.++++..+.-...++.+++-++.+   
T Consensus        84 P~lL~g~ip~~i~~~l~F~~p~--~-------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~---  145 (467)
T COG2211          84 PWLLWGAIPFAIVAVLLFITPD--F-------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ---  145 (467)
T ss_pred             HHHHHHhHHHHHHHHHHHcCCC--c-------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH---
Confidence            5555666777777777776521  0             012344555566677889998888888898888875543   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-------ccCcchhhhHhHHHHHHHHHH
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQE-------QKGWSVGFGIPTAFTICSIII  254 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-------~~g~~~~f~i~~~~~~~~~i~  254 (540)
                        +|.+..+|-..+.++|.++...+.+.+..       ..||+..-.+.+++.++..+.
T Consensus       146 --ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~  202 (467)
T COG2211         146 --ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF  202 (467)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence              28899999888889987776655554443       235555544444444444443

>PRK10054 putative transporter; Provisional

Probab=98.94  E-value=1.7e-08  Score=106.35  Aligned_cols=174  Identities=12%  Similarity=-0.023  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      |.++...+..++..+.+.....+++.|+...  .+.+....+..............++.|++.||. |            
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~------------  272 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-N------------  272 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-C------------
Confidence            4455555556666666665666777777543  445555666666666666666678889999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         +|+.+.++..+..++...+....                    .+.+.++++..+.++|.+...|...+.+.+..|+
T Consensus       273 ---~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~  329 (395)
T PRK10054        273 ---IRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP  329 (395)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHcc--------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc
Confidence               99999888888888777665431                    1344456677788888887778888888888887


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +.      ++++++... ...+|..+||.++|++.|+.|....|++.+++..++++..+
T Consensus       330 ~~------~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        330 GM------KASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             cc------ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            66      788877654 56689999999999999999988888775555555544443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.92  E-value=9.2e-08  Score=100.75  Aligned_cols=167  Identities=10%  Similarity=0.014  Sum_probs=117.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++...+..++....+++...+++.++.+++|++..+++........+..++.++.|++.||. +              
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~--------------  280 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-V--------------  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--------------
Confidence            4455555555566666666667764444467899999999988888888999999999999995 4              


Q ss_pred             cchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       |+ .++.+..+..+ +.++....                     .+.+.+.++.++.|++.+...+...+++.+..|++
T Consensus       281 -~~-~l~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  337 (394)
T PRK10213        281 -KL-ALAGAPLVLAVSALVLTLWG---------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ  337 (394)
T ss_pred             -hh-HHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc
Confidence             44 44444443333 33333222                     12455666777888898888888888888777643


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICS  251 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~  251 (540)
                             .+...+++....++|..+||.++|++.|..|+...+..++++.++.
T Consensus       338 -------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        338 -------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence                   3445566667778999999999999999999888887766554433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=3.1e-08  Score=104.55  Aligned_cols=155  Identities=10%  Similarity=0.047  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHH
Q 041588           57 FAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGM  136 (540)
Q Consensus        57 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~  136 (540)
                      .....++|.|+++..+ +..+.+.+.+.............+++.||.++               .++.+..+.++..++.
T Consensus       225 ~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~---------------~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        225 VQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFR---------------LEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------hhHHHHHHHHHHHHHH
Confidence            3345678899877655 66777777766655555444444555555436               6777777777777777


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH
Q 041588          137 VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA  216 (540)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~  216 (540)
                      +++....                     +...+.+...+.++|.+...|...++..+..|+++      |++++++++..
T Consensus       289 ~~l~~~~---------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~  341 (400)
T PRK11646        289 FPIGMVS---------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLG  341 (400)
T ss_pred             HHHHHhh---------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHH
Confidence            6665541                     23444555566777877777888899999999877      99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcc---C-cchhhhHhHHHHHHHHHH
Q 041588          217 INMGAIFGITVLVYIQEQK---G-WSVGFGIPTAFTICSIII  254 (540)
Q Consensus       217 ~~iG~~i~p~v~~~l~~~~---g-~~~~f~i~~~~~~~~~i~  254 (540)
                      .++|..+||.+.|++.|+.   + ....+++..+..+++.++
T Consensus       342 ~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        342 LALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999998874   2 244444444444444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.91  E-value=6.2e-08  Score=101.16  Aligned_cols=170  Identities=14%  Similarity=-0.041  Sum_probs=113.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+|.+.+..++....+|++..|+|.|+++ .|++.. ++....+.....   .+..++++||. .+.            
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g---~~g~~~~~d~~-~r~------------  253 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAG---LIGVAVIPDRV-ARA------------  253 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHH---HHHHHHhhHHh-hhh------------
Confidence            667888899999999999999999999964 678765 555554444433   34468899987 500            


Q ss_pred             cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                      +||+.... ..++..++.+.+....                     +....++...+.+++.....+...++.+|.+|++
T Consensus       254 ~~r~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~  312 (368)
T TIGR00903       254 GLRSIYIRAAALLIAAFFLALAFEL---------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE  312 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence            02333222 3333333333333221                     1222233344455556666677888999999998


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      .      |+++.++.+...++|+.++|.+.+.+..  |....|.+.++..+++.++.+
T Consensus       313 ~------rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       313 L------HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             h------cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            7      9999999999999999999999887773  666667666666555555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.91  E-value=3.5e-08  Score=117.88  Aligned_cols=165  Identities=9%  Similarity=-0.050  Sum_probs=129.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP-TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~-~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. .++++.+...++..++.++.|+++||+ +             
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~-------------  297 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-I-------------  297 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e-------------
Confidence            4455555555566666667788899999999999998 899999999999999999999999998 9             


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          119 QGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                        +++++.++.++.+++.+++....                     +...+++..++.|++.++..+...+++.+..|++
T Consensus       298 --~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  354 (1146)
T PRK08633        298 --ELGLVPLGALGLALSLFLLPTAP---------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK  354 (1146)
T ss_pred             --EccchhHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc
Confidence              99998888887777777766552                     3455667778888888888888889999999888


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAF  247 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~  247 (540)
                      .      |+++++++++..++|+++++.+++.+... .++...|++.+.+
T Consensus       355 ~------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        355 E------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             c------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            7      99999999999999998888777766442 3444455544333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.90  E-value=2.6e-07  Score=97.72  Aligned_cols=191  Identities=16%  Similarity=0.168  Sum_probs=138.9

Q ss_pred             ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 041588           32 DKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALK  110 (540)
Q Consensus        32 ~~~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~  110 (540)
                      .+..+.+||++++..+..++..+.++.+.+-.-.|+.+ +.+-+.+..|++++....+..++.+..|+-+-|. |     
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~-----   99 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-G-----   99 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-C-----
Confidence            44567789999999999999988888777777788864 4677788889999999999999999999999997 6     


Q ss_pred             hhhhhhhcccc-hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588          111 HVHAIFKLQGR-FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS  189 (540)
Q Consensus       111 ~~~~~~~~~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~  189 (540)
                                + |+.++.+.++.++|.++.......|.                .....++++|++.|+|.|.. +..-+
T Consensus       100 ----------~~k~Pli~s~ii~~~g~llY~~l~~~~~----------------~~~y~mL~~R~l~Gvg~~n~-a~lR~  152 (488)
T KOG2325|consen  100 ----------SVKKPLIVSFLIAIIGNLLYLALAYVPN----------------GVKYLMLVARILTGVGVGNF-AVLRA  152 (488)
T ss_pred             ----------CcccCHHHHHHHHHHHHHHHHHHHhccc----------------chHHHHHHHHHHcCcCcccH-HHHHH
Confidence                      4 88889999999999998854433222                25788899999999987653 56667


Q ss_pred             hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHhhhhc---------cCcchhhhHhHHHHHHHHHHHH
Q 041588          190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV----LVYIQEQ---------KGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v----~~~l~~~---------~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +.+|---.++      |.++++....+..+|..+||.+    ++...+.         .-|..+-|+.++..++.+++..
T Consensus       153 Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  153 YIADASTVED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            7777655555      6677666555555555555554    4433221         1245566777777777777665


Q ss_pred             hcCcc
Q 041588          257 AGFPY  261 (540)
Q Consensus       257 ~~~~~  261 (540)
                      +..++
T Consensus       227 ~~f~E  231 (488)
T KOG2325|consen  227 FFFKE  231 (488)
T ss_pred             hheee
Confidence            55443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.89  E-value=5.9e-08  Score=105.47  Aligned_cols=173  Identities=13%  Similarity=0.079  Sum_probs=140.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .+..+++..++.++....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+++ +               
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~---------------  282 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-S---------------  282 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C---------------
Confidence            334444444555555555667789999999999999999999999999999999999999997 8               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      +++.+..+.+++.++++.++++                     .+.+..++++++.|.+.........+......|++. 
T Consensus       283 ~~~lv~~~~~~~a~~~~~lal~---------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~-  340 (524)
T PF05977_consen  283 SRRLVLLASLLFALALLLLALS---------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV-  340 (524)
T ss_pred             cchhhHHHHHHHHHHHHHHhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-
Confidence            8898888888888888777766                     245666777778888888777777788888888887 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHH
Q 041588          201 KEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~  256 (540)
                           |++.++++....+.+..+|..+.|++.+..|-+..+.++++..+++.++..
T Consensus       341 -----~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  341 -----RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence                 999999999999999999999999999999988888877766665555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09848 glucuronide transporter; Provisional

Probab=98.88  E-value=4.4e-08  Score=104.89  Aligned_cols=164  Identities=12%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...+..++...+++......+.|+++.+|.+....+...........++.++.++++||+ |              
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g--------------  292 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-G--------------  292 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            4556666777777777777777778888888888776555544444556777899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+++.++.++..++.+++.+..                   ..+.+.++++.++.++|.+...+...++.+|..|.++
T Consensus       293 -~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        293 -KKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence             99999999988888877766431                   1234556667778899999999999999998887543


Q ss_pred             hHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EKE-AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~~-~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      .+. .++.+..++.++++..+|..+++.+.+.+.+..||.
T Consensus       353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            211 122577888999999999999999999887766663

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.88  E-value=1.4e-07  Score=94.91  Aligned_cols=167  Identities=18%  Similarity=0.134  Sum_probs=132.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..|.+.+-.-+.+..||.+..|+|.++. +.|+|..++|.+++..........+++-++++|...              
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n--------------  272 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN--------------  272 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            44588888889999999999999999987 589999999999999999999999999999999856              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+..+.....+.+|.+-+.+..                    .+...+.  .+++|+|.|+..|....++.+..++.+
T Consensus       273 -~r~~~~~~~~~~l~G~~G~~~~P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~  329 (395)
T COG2807         273 -QRPLVVLALLLMLVGLVGLLLAP--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA  329 (395)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHhh--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH
Confidence             88888888888999888887652                    1222333  578999999999999999988765443


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTI  249 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~  249 (540)
                        +   -+..-++-+-.+.+=+.+||.+.|++.|.+| |....+..+.+.+
T Consensus       330 --~---Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         330 --I---AAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             --H---HHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence              2   3444555555555667789999999999876 8877765444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.85  E-value=5.9e-08  Score=115.98  Aligned_cols=184  Identities=10%  Similarity=-0.118  Sum_probs=132.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++..++..++..+.++++.+++|.|+.+.+|.+...++.+.+.+.++..++.++.|+++|+. +              
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~--------------  289 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-I--------------  289 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e--------------
Confidence            5667777777777788888889999999999999999999999999999999999999999987 6              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC-CCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKE-RPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       +++.+..+.++..++.+.+.+... ....++..-. ..+.. ...+.+.++++.++.|++.+...+...+++.+..|++
T Consensus       290 -~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  366 (1140)
T PRK06814        290 -TLLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA  366 (1140)
T ss_pred             -eeeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc
Confidence             667666666555554444433200 0000000000 00000 0023455667778889999988888999999999998


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhhHhHHH
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-QKGWSVGFGIPTAF  247 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-~~g~~~~f~i~~~~  247 (540)
                      .      ++++++.++...++|..+++.+.+.+.+ ..++...|++.+++
T Consensus       367 ~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        367 H------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             c------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            8      9999999999999999999999998874 34566665544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.81  E-value=1.5e-08  Score=103.81  Aligned_cols=143  Identities=20%  Similarity=0.193  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccc
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQS-LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGR  121 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s-~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r  121 (540)
                      |.++...+.....++....++|.|+.+++|++ ..+.+.......+...++.++.|+++||+ |               +
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---------------~  272 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-G---------------R  272 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---------------C
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------c
Confidence            44555556666778888899999999999999 78999999999999999999999999997 9               8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChH
Q 041588          122 FRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEK  201 (540)
Q Consensus       122 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~  201 (540)
                      ++.+.+......++.+.+.....                  ..+....+...++.|++.+...+...++..|.+|+++  
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--  332 (352)
T PF07690_consen  273 RRRLLIAILLLILGALGLLLLPF------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY--  332 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSHH------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence            88888877776666666554421                  1234556667778889999889999999999998876  


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHH
Q 041588          202 EAIQKYVFFNWFFFAINMGAIFGI  225 (540)
Q Consensus       202 ~~~~r~~~~~~~~~~~~iG~~i~p  225 (540)
                          +++..++++...++|+.++|
T Consensus       333 ----~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  333 ----RGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHCC
Confidence                99999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.78  E-value=4.8e-06  Score=88.85  Aligned_cols=164  Identities=12%  Similarity=0.078  Sum_probs=115.2

Q ss_pred             HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 041588           63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL--GQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLT  140 (540)
Q Consensus        63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~--G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~  140 (540)
                      ...|+.+++|++..+.....++...-. ..-++.|.++|.+-  |   +          .||+-++++.++..++...++
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G---~----------rr~~Y~~i~~~~~~~~~~~~~   77 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFG---Y----------RRKPYMIIGWLLGAVSALVLA   77 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccC---C----------cchHHHHHHHHHHHHHHHHHH
Confidence            346788999999998877665554443 44567889999871  2   0          055555566666655555555


Q ss_pred             HhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHH
Q 041588          141 VSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMG  220 (540)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG  220 (540)
                      .....                 ..+.....+.+.+..+|.+....+.-++.+|...++...    ++..-++.+....+|
T Consensus        78 ~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G  136 (433)
T PF03092_consen   78 LLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVG  136 (433)
T ss_pred             hcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHH
Confidence            44210                 122344555666778888888888888888887555432    677778888899999


Q ss_pred             HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          221 AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       221 ~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      ++++..+.|.+.+..+++..|.+.+++..+..+..++..++
T Consensus       137 ~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  137 SLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999998877776666665555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.76  E-value=5.4e-07  Score=94.89  Aligned_cols=163  Identities=10%  Similarity=-0.126  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHH
Q 041588           53 RLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIY  132 (540)
Q Consensus        53 ~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~  132 (540)
                      ..........++.|+.+.+|.+..++|.+.....++..++.++.|++.||. +               +++++..+. +.
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~---------------~~~~~~~g~-~~  280 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-T---------------VLRVLPAGI-LM  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-c---------------ccchHHHHH-HH
Confidence            344455556677888888999999999999999999999999999999997 8               888887764 33


Q ss_pred             HHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHH
Q 041588          133 SVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW  212 (540)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  212 (540)
                      .+..+.+...                     .+.+...+..++.|++.+...+...+...+.-|++.     +++++++.
T Consensus       281 ~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~  334 (393)
T PRK11195        281 GLVVLLMALQ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAV  334 (393)
T ss_pred             HHHHHHHHHH---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHH
Confidence            3333333322                     123445556667888888877777777776543321     16889999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          213 FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       213 ~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      .+...++|..++..+.+.+ +..|=+..+.+..+..+++..+....+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        335 QNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888855 567877777776666555555544433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.74  E-value=4.5e-07  Score=96.50  Aligned_cols=193  Identities=12%  Similarity=0.022  Sum_probs=126.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      .++..+..+...++..+.--....+....+-..-|++..++.........+..++++++.++-||+ |            
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-g------------  333 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-G------------  333 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence            344555555555555444333333334445567899999999999889999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcC-CCccchhhhhhccCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR-DIKPCVSSFGADQYD  196 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g-~~~~~~~~~~~d~~~  196 (540)
                         ||+.++++..++.+..+++.....+....            +..-....++++++..++.+ +..|...-+.+|++|
T Consensus       334 ---RRpLll~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~  398 (485)
T KOG0569|consen  334 ---RRPLLLISLSLMAVALLLMSIALFLSNSF------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP  398 (485)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence               99999999999888888777664322100            00000112334444333333 345777888899999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ  265 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~  265 (540)
                      ++.      |..+.++-.....+..++-...-..+.+..|- ..|.+.++..++..+..+...|+.|.+
T Consensus       399 ~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  399 QSA------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             ccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            988      88888876666666666555566667777664 455555555555555555666666544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.74  E-value=2.6e-07  Score=92.84  Aligned_cols=174  Identities=13%  Similarity=0.103  Sum_probs=113.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cC-----------------CChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVRE--MH-----------------QSLPTAGTHVTDWIGAAYVLTILGAFLA  100 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~--lg-----------------~s~~~a~~~~~~~~~~~~~~~~~gG~la  100 (540)
                      |.-+.+....|.+.++||++.-......+..  .|                 .+...--.-..+-...-.-+.++.|++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            3445666778889999999754332222211  11                 1111111222333445667889999999


Q ss_pred             hhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhc
Q 041588          101 DAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGT  180 (540)
Q Consensus       101 D~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  180 (540)
                      ||+ |               ||+++....+++.+..+++...-                . .+....+++.+++++..+.
T Consensus       406 erl-G---------------RKkTMal~l~~f~iflfll~~c~----------------~-rn~~tvllf~arafisg~f  452 (528)
T KOG0253|consen  406 ERL-G---------------RKKTMALSLILFGIFLFLLTTCK----------------T-RNAYTVLLFTARAFISGAF  452 (528)
T ss_pred             HHh-c---------------chhHHHHHHHHHHHHHHHHHHhc----------------C-cchhHHHHHHHHHHHhchh
Confidence            996 9               99999999999888877776541                1 1123345566666655443


Q ss_pred             CCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          181 RDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       181 g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                          .+.+.+..|.||...      |+++.|.-..+.-+|+++.|.++  +.....-..+..+..++.+++.+...++
T Consensus       453 ----qvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  453 ----QVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             ----eEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence                567788899999998      99999998889999999999998  3333333444445555556666655443

>PRK11043 putative transporter; Provisional

Probab=98.73  E-value=8.4e-07  Score=93.36  Aligned_cols=159  Identities=14%  Similarity=-0.012  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +...+...+....++....++|.|++ +.|++..+.+...........++.++++++.||+ |               +|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~---------------~~  268 (401)
T PRK11043        206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-G---------------GE  268 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------HH
Confidence            33333334444556666778888875 5899999998877777778888899999999998 9               98


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+....+...++.+.+.......                ..+...++++..+.+++.+...+...+...+..|+ +   
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---  328 (401)
T PRK11043        269 QLLPWLLVLFAVSVIAIWLASLLS----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A---  328 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c---
Confidence            877666555555444333221100                01234445556677888888778777777777654 3   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGF  241 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f  241 (540)
                         ++++.++++.....++.+++.+.+.+.+.......+
T Consensus       329 ---~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        329 ---TGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS  364 (401)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence               788999988888888888888888887654444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.2e-07  Score=102.71  Aligned_cols=176  Identities=13%  Similarity=0.068  Sum_probs=145.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.++.+++...+..++++....+++.|.. ..|++..+++.+.++..+...++.++.|+++|+. .              
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~--------------  361 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-G--------------  361 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-c--------------
Confidence            67788888999999999999999999988 7999999999999999999999999999999997 4              


Q ss_pred             cchHHHH--HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          120 GRFRTLV--VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       120 ~r~~~i~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                       .++..+  ++.++..++.+.+++.                     .+...+...-++.|+..|.+.+.......|..+.
T Consensus       362 -~~~~~~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~  419 (509)
T KOG2504|consen  362 -IRALVLFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL  419 (509)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence             333333  3334444455444444                     3456677777788888888888887888999988


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcC
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      ++      ...++++..+...+++++||.++|++.|.+| |...|+.+.+..+++.+..+...
T Consensus       420 ~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  420 EK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            76      8899999999999999999999999999988 99999999998888877665554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.71  E-value=8.7e-07  Score=92.17  Aligned_cols=150  Identities=15%  Similarity=0.009  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+..++..++.....+....+.|.|+.+.+|++..+++.......+...++.+++|+++||+ |              
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g--------------  258 (377)
T PRK11102        194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-G--------------  258 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            3445555555566666666677778888888999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++..+..+..+.+......+                 .+.....++..+.+.+.+...+.......|..| +.
T Consensus       259 -~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  319 (377)
T PRK11102        259 -ALNMLRFGLWIQFIMGIWLVVSALLD-----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM  319 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc
Confidence             99999988876544333322221000                 123333444444444444445555556667666 33


Q ss_pred             hHHHHhhhhhHHHHHHH-HHHHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFA-INMGAIFGITVLV  229 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~  229 (540)
                            +++..+.++.. ..+|+.+++.+++
T Consensus       320 ------~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        320 ------AGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             ------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  67777775543 3466666666543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.71  E-value=2.7e-07  Score=99.72  Aligned_cols=166  Identities=14%  Similarity=0.008  Sum_probs=118.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.+++..++.....+...+..+.|.+..++ +....+.+.....+...++.++.++++||+ |              
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g--------------  294 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-S--------------  294 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            666777777787887777776666655544444 455555666666677888889999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+++.++..+.+++.+.+......+                ..+...+++..++.+++.+...+...++.+|..|.++
T Consensus       295 -kk~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e  357 (473)
T PRK10429        295 -RRILWAGASIFPVLSCGVLLLMGLAA----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE  357 (473)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhccC----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             99999988877776666554431111                1234555666677888888888889999999977542


Q ss_pred             hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      -+ .+++.+..++...+...+|..+++.+.|++.+..||.
T Consensus       358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            11 1122456788899999999999999999988777763

>TIGR00898 2A0119 cation transport protein

Probab=98.71  E-value=2e-07  Score=101.23  Aligned_cols=131  Identities=13%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCC
Q 041588           84 DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNG  163 (540)
Q Consensus        84 ~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (540)
                      ...+....+.+++++++||+ |               ||+++.++.++..++.+++.....                   
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~-g---------------rr~~~~~~~~~~~~~~l~~~~~~~-------------------  407 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRL-G---------------RRYTMAASLLLAGVALLLLLFVPV-------------------  407 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-C---------------CHHHHHHHHHHHHHHHHHHHHcCC-------------------
Confidence            34455667888999999998 9               999999998888887776665421                   


Q ss_pred             chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhH
Q 041588          164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGI  243 (540)
Q Consensus       164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i  243 (540)
                      .......+...+.+++.+...+...++.+|.+|++.      |++++++.+....+|++++|.+.+ +. ..++...+.+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~  479 (505)
T TIGR00898       408 DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVL  479 (505)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHH
Confidence            111223333344445555556777888899999887      999999999999999999999988 43 3456667766


Q ss_pred             hHHHHHHHHHHHHh
Q 041588          244 PTAFTICSIIIVAA  257 (540)
Q Consensus       244 ~~~~~~~~~i~~~~  257 (540)
                      .++..+++.++.++
T Consensus       480 ~~~~~~~~~~~~~~  493 (505)
T TIGR00898       480 FGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHHc
Confidence            66665555555443

>PRK09669 putative symporter YagG; Provisional

Probab=98.70  E-value=5e-07  Score=96.69  Aligned_cols=163  Identities=14%  Similarity=0.073  Sum_probs=109.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.+++..++...+........+.|.+..++ +....+.+.....+...++.+++++++||+ |              
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g--------------  292 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-D--------------  292 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            445555555555555554333433333333333 233334444555666778888999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+.+.++.++..++.+.+.+..                   ..+...+++..++.+++.+...+...++.+|..|.++
T Consensus       293 -k~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e  352 (444)
T PRK09669        293 -RVRAFKWTIVAFVILSALIFFIP-------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEE  352 (444)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhC-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             99999888766655443333221                   1245556777778999999999999999999987543


Q ss_pred             hH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EK-EAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~-~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      .+ .+++.+..++.+.++.++|..+++.++|++.+..||.
T Consensus       353 ~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        353 KRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             hhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            22 1222466788899999999999999999998887774

>TIGR00901 2A0125 AmpG-related permease

Probab=98.69  E-value=2.5e-07  Score=95.68  Aligned_cols=145  Identities=12%  Similarity=-0.017  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWI-GAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      ..+.+.+..++...+++...++++.|+.+ +|++..+.+.+..+.. ....++.+++|+++||+ |              
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g--------------  273 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-N--------------  273 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-h--------------
Confidence            46666667777789999999999999987 9999999988777665 56778899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+.++.++..++..++....+.....          +.+..+...+..+.++.+++.+...+...++..+.+|++.
T Consensus       274 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~  342 (356)
T TIGR00901       274 -ILYALLLFGIVQALTNAGFVWLASNGHHD----------GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF  342 (356)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcCccc----------ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc
Confidence             99999998888777666555432100000          0000134455666677889999999999999999999988


Q ss_pred             hHHHHhhhhhHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAIN  218 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~  218 (540)
                            |++.+++++...|
T Consensus       343 ------~g~~~g~~~~~~~  355 (356)
T TIGR00901       343 ------GATQMALLSSLSA  355 (356)
T ss_pred             ------cHHHHHHHHHHHh
Confidence                  9999999877665

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.68  E-value=2e-05  Score=81.38  Aligned_cols=144  Identities=13%  Similarity=0.013  Sum_probs=97.3

Q ss_pred             hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch--HHHHHHHHHHHHHHHHHHHhcc
Q 041588           67 LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF--RTLVVFSCIYSVGMVLLTVSGS  144 (540)
Q Consensus        67 l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~--~~i~~~~~~~~~~~~~l~~~~~  144 (540)
                      +..|++++..-.+.++........ ..+..|+.||+. +           |..|.|  +-+..|..+...+..+.+.+..
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~-----------s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~   72 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-P-----------SILGWRRTPYIWGGTLLQAGGLAIAPFALL   72 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-c-----------ccCcCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888887776655 577889999986 3           222233  3355566677777666665532


Q ss_pred             cCCCCCCCCCCCCCccCCCchhH--HHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHH
Q 041588          145 LDSLRPPACKERPCVEVNGGQNG--FLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAI  222 (540)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  222 (540)
                      .....-    + ..  ......+  ...++..+.|+|.+...++..++.+|..|+++      |....++.+...-+|.+
T Consensus        73 ~l~~~~----~-~~--~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~i  139 (403)
T PF03209_consen   73 LLAESG----Q-QS--SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGII  139 (403)
T ss_pred             HHcccc----c-cc--ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHH
Confidence            211100    0 00  0011122  33344456777777888899999999999887      99999999999999999


Q ss_pred             HHHHHHHhhhhccC
Q 041588          223 FGITVLVYIQEQKG  236 (540)
Q Consensus       223 i~p~v~~~l~~~~g  236 (540)
                      ++..+.+.+.+.++
T Consensus       140 v~ai~~g~lL~~~s  153 (403)
T PF03209_consen  140 VSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHccccC
Confidence            99999998877665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.65  E-value=2.1e-05  Score=81.19  Aligned_cols=127  Identities=15%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             HHHHHHHhhHhcCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHH
Q 041588           60 AVNMTAYLVREMHQ---SL----PTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIY  132 (540)
Q Consensus        60 ~~~l~~yl~~~lg~---s~----~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~  132 (540)
                      ..++|.|+++..+-   +.    +..+...++......+..|+-|-++|.. |              .|||.+-....+.
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g--------------~Rk~~~~~f~~i~   99 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-G--------------PRKKFFGFFTAIG   99 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-C--------------CcchHHHHHHHHH
Confidence            35678898876654   32    2345566667777778888889999998 7              1455555565666


Q ss_pred             HHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHH
Q 041588          133 SVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNW  212 (540)
Q Consensus       133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~  212 (540)
                      .+.+..+....                  ++.+....++..++..++..+......++..|..++++-+    |.+..+ 
T Consensus       100 i~~~~~L~~i~------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg-  156 (438)
T COG2270         100 IISTFLLWFIP------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLG-  156 (438)
T ss_pred             HHHHHHHHHhC------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----cccccc-
Confidence            67777777662                  1124455555566777888888888999999998876632    333333 


Q ss_pred             HHHHHHHHHHHHH
Q 041588          213 FFFAINMGAIFGI  225 (540)
Q Consensus       213 ~~~~~~iG~~i~p  225 (540)
                       +-...+|+.+.-
T Consensus       157 -~~~gylgs~i~l  168 (438)
T COG2270         157 -WALGYLGSVILL  168 (438)
T ss_pred             -cccccccchHHH
Confidence             334445554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=7.2e-07  Score=94.53  Aligned_cols=164  Identities=12%  Similarity=0.033  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVRE-MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      .++...+..++...+..++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ +              
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~--------------  297 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-A--------------  297 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            344455555665555566778899998653 255555566667777788899999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +||++.++.++..+..++.....                     +. .....+.+.++..+.+.|...+...+..+++.
T Consensus       298 -~~~~l~i~~~~~~~~~ll~~~~~---------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~  354 (410)
T TIGR00885       298 -AHKVLMAYAIIGMALCLGSIFAG---------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT  354 (410)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHcC---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             99998888887777777666541                     11 22455667778888888999999999887654


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc------CcchhhhHhHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK------GWSVGFGIPTAFTIC  250 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~------g~~~~f~i~~~~~~~  250 (540)
                            + .+-+..-++ .+|+.+.|.+.|++.|..      +.+..|.++.++.+.
T Consensus       355 ------~-~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       355 ------K-YGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             ------h-hhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence                  2 222222223 399999999999999954      478888876665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.64  E-value=1.8e-07  Score=96.79  Aligned_cols=142  Identities=11%  Similarity=0.018  Sum_probs=105.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +..+.+.+..++....++++..+++.|+++.+|++..+++.+.....+...++.+++|+++||+ |              
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g--------------  289 (366)
T TIGR00886       225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-G--------------  289 (366)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-c--------------
Confidence            3456666666666677788889999999999999999999989889889999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+.+..+......+..++.....                 +..+....+....+.+++.|...+...++.++.+|. +
T Consensus       290 -~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~  350 (366)
T TIGR00886       290 -GARKLLMSFLGVAMGAFLVVLGLV-----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A  350 (366)
T ss_pred             -cchhHHHHHHHHHHHHHHHHhcCC-----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h
Confidence             988888877766666655554311                 001344445555556666666667777778888763 3


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGA  221 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~  221 (540)
                            +++..++.+...++|+
T Consensus       351 ------~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       351 ------TGAVSGLVGAIGNLGG  366 (366)
T ss_pred             ------cccHHHHHHHhccCCC
Confidence                  8889888888777763

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.63  E-value=2.3e-06  Score=89.74  Aligned_cols=73  Identities=10%  Similarity=0.107  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588           54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS  133 (540)
Q Consensus        54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~  133 (540)
                      ...+....+.|.|+.+++|++..+.+...........++.++.|+++||+ |               ||+.+.++.++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g---------------~~~~~~~~~~~~~  280 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-K---------------PRTLMLTSQVLFL  280 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------HHHHHHHHHHHHH
Confidence            33334455667788888999999999888888888999999999999998 9               9999999988888


Q ss_pred             HHHHHHHHh
Q 041588          134 VGMVLLTVS  142 (540)
Q Consensus       134 ~~~~~l~~~  142 (540)
                      ++.+++...
T Consensus       281 ~~~~~~~~~  289 (392)
T PRK10473        281 AAGITLALS  289 (392)
T ss_pred             HHHHHHHHH
Confidence            887777665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.62  E-value=1.7e-05  Score=80.14  Aligned_cols=155  Identities=14%  Similarity=0.036  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHH
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVF  128 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~  128 (540)
                      ...+...+-.+.+.+..-+....|.+..+..++......+..++....|.++|++ |               ||+...+.
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-g---------------rr~~f~~T  149 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-G---------------RRKGFNLT  149 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-h---------------cchhhhhh
Confidence            3334444444555555556677888999999999999999999999999999998 9               99988777


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhh
Q 041588          129 SCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYV  208 (540)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~  208 (540)
                      .....+.-++-..+                     .++..+++.+.+.++|.|+ .|...++-.+..|...      |..
T Consensus       150 ~l~t~v~~~is~~s---------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~  201 (528)
T KOG0253|consen  150 FLVTGVFGVISGAS---------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWL  201 (528)
T ss_pred             HHHHHHHHHhhcCC---------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCc
Confidence            65544443333322                     3567788889999999999 7888888888888776      444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHH
Q 041588          209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFT  248 (540)
Q Consensus       209 ~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~  248 (540)
                      -.-.. ..-.+|.++...++=.+..+.||++......+-.
T Consensus       202 ~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl  240 (528)
T KOG0253|consen  202 LTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL  240 (528)
T ss_pred             chhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH
Confidence            33333 4445667666666655667789998766555433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.58  E-value=1.4e-05  Score=82.86  Aligned_cols=135  Identities=11%  Similarity=0.066  Sum_probs=103.2

Q ss_pred             HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 041588           62 NMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTV  141 (540)
Q Consensus        62 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~  141 (540)
                      -...|..+.+| +...+.+...+|..++....+.+-|+.|++ |               -|.+.+++..+..+|..+=.+
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-G---------------LR~a~llgt~ln~iGa~Ir~i  128 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-G---------------LRTALLLGTVLNGIGAWIRLI  128 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-c---------------hHHHHHHHHHHHHHHHHHhhh
Confidence            34567777788 777788899999999999999999999998 9               999999999999999887776


Q ss_pred             hcccCCCCCCCCCCCCCccCCCchh--HHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          142 SGSLDSLRPPACKERPCVEVNGGQN--GFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                      +. .|.+.              +..  .....+..+.+..+-.+....+-+.+-+|++++      |.++...-.+++-+
T Consensus       129 ss-~p~v~--------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~L  187 (480)
T KOG2563|consen  129 SS-LPFVP--------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPL  187 (480)
T ss_pred             cc-Ccccc--------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchH
Confidence            53 23221              122  356677777777777666666666778898887      88888887777778


Q ss_pred             HHHHHHHHHHhhhhc
Q 041588          220 GAIFGITVLVYIQEQ  234 (540)
Q Consensus       220 G~~i~p~v~~~l~~~  234 (540)
                      |.+++.++.+.+..+
T Consensus       188 Gvavg~llppilV~~  202 (480)
T KOG2563|consen  188 GVAVGFLLPPILVPS  202 (480)
T ss_pred             HHHHHhhccceecCC
Confidence            887777776666543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.55  E-value=3.8e-06  Score=85.27  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=107.8

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588           69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL  148 (540)
Q Consensus        69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~  148 (540)
                      +++|++..+.+.+.....+...+..++.|.++||+ |               |||.-++.++++.++.+.--.       
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-G---------------rk~~cl~~cily~~scl~k~~-------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-G---------------RKKACLLFCILYSLSCLTKHS-------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------chHHHHHHHHHHHHHHHHHhc-------
Confidence            57999999999999999999999999999999998 9               999999999988887754332       


Q ss_pred             CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC-hHHHHhhhhhHHHHH-HHHHHHHHHHHH
Q 041588          149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD-EKEAIQKYVFFNWFF-FAINMGAIFGIT  226 (540)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~-~~~~~~r~~~~~~~~-~~~~iG~~i~p~  226 (540)
                                     .+...++++|++.|+++....++.-+.......+++ +++  -.+.-|+... +.+.+-++.+..
T Consensus       119 ---------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv  181 (354)
T PF05631_consen  119 ---------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGV  181 (354)
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhH
Confidence                           357889999999999999888877776543322222 111  1333344333 233344455555


Q ss_pred             HHHhhhhccCc--chhhhHhHHHHHHHHHHHHhcCc
Q 041588          227 VLVYIQEQKGW--SVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       227 v~~~l~~~~g~--~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++-++++..|.  ..+|..+.++.+++.++.....+
T Consensus       182 ~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  182 VANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence            66677776654  77888877777776666544333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.55  E-value=3.8e-06  Score=88.60  Aligned_cols=182  Identities=11%  Similarity=0.015  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .+...++..++...+.-....+...|+++.-|.+....+...++..+.=.+.-.+.+++-.|+ |               
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g---------------  271 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-G---------------  271 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------
Confidence            344444555566666666668889998764447777777777776677777778889999997 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      .+++++++.+.+++=..+++.... |.               .......+++..+.|+..|....+...++.+..|++. 
T Consensus       272 ~~~ll~~a~~~~~vR~~l~a~~~~-~~---------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~-  334 (400)
T PF03825_consen  272 IKWLLLLALVAYAVRWLLYAYFSD-PW---------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL-  334 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-Cc---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc-
Confidence            999999999888887777666521 00               0011223444567999999999999999999999988 


Q ss_pred             HHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhccCcc------hhhhHhHHHHHHHHHHHHhcCc
Q 041588          201 KEAIQKYVFFNWFFFA-INMGAIFGITVLVYIQEQKGWS------VGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~~l~~~~g~~------~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                           |.++-+++... ..+|+.+|..++|++.|++|-+      ..+.+++++.++..++++...|
T Consensus       335 -----~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  335 -----RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             -----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                 88999987764 5799999999999999987644      3445555555555555555433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.48  E-value=4.5e-06  Score=89.13  Aligned_cols=174  Identities=17%  Similarity=0.111  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHhhHhcCCChhHH-HHHHHHH----HHHHHHHHHHHHHHhhhhcCCCcchhhhh
Q 041588           43 PFIIVNEVAERLAFFAIA---VNMTAYLVREMHQSLPTA-GTHVTDW----IGAAYVLTILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~---~~l~~yl~~~lg~s~~~a-~~~~~~~----~~~~~~~~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      +.+....+...++++...   .+...+.....+.+.... +......    .....+..++-|.++||+ |         
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-g---------   90 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-G---------   90 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-h---------
Confidence            445555666666666654   555556555444433322 2223333    456778899999999998 9         


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHH--hcCCCccchhhhhh
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIAL--GTRDIKPCVSSFGA  192 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~g~~~~~~~~~~~  192 (540)
                            ||..+.+..+...+..+.+.+..                       +++++   +.++  +.+...+...++++
T Consensus        91 ------rk~~L~~~~~~~~l~~~~~~~~~-----------------------~~~~~---~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   91 ------RKVVLLLPLFGTILPALCLLFQG-----------------------YWFFL---LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             ------hhhhHHHHHHHHHHhHHHHHHHH-----------------------HHHhh---hcccccchhhhhhhhhhhee
Confidence                  99999999988888877777651                       22222   3332  33345567778888


Q ss_pred             ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588          193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRY  264 (540)
Q Consensus       193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~  264 (540)
                      |...+++      |...+++.+.+...+..++|.+++++.+..|.-..|.+.++..+++.+-.++..|+..+
T Consensus       139 dis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  139 DISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             eccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            8887765      89999999988899999999999999999999999999888888877776666665443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.47  E-value=9.3e-06  Score=85.19  Aligned_cols=145  Identities=12%  Similarity=-0.001  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH
Q 041588           54 LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS  133 (540)
Q Consensus        54 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~  133 (540)
                      ..........+.|+.+.+|++..+.+........+..++.++++++.||. |               ++.......  ..
T Consensus       221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~---------------~~~~~~~~~--~~  282 (394)
T PRK11652        221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S---------------TLMWQSVIC--CL  282 (394)
T ss_pred             HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHH--HH
Confidence            33444445667788888999999888887777677777777777777776 5               443332222  22


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHH
Q 041588          134 VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWF  213 (540)
Q Consensus       134 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~  213 (540)
                      ++.+.+.......                ..+...++.+..+.++|.+...|...+...|.+|+ +      +++..+..
T Consensus       283 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~  339 (394)
T PRK11652        283 LAGLLMWIPGWFG----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALL  339 (394)
T ss_pred             HHHHHHHHHHHhc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHH
Confidence            2222211111000                01234556667788888888888888888888864 3      67888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCcch
Q 041588          214 FFAINMGAIFGITVLVYIQEQKGWSV  239 (540)
Q Consensus       214 ~~~~~iG~~i~p~v~~~l~~~~g~~~  239 (540)
                      +...++|+.+++.+++++.+...+..
T Consensus       340 ~~~~~lg~~~~~~~~~~~~~~~~~~~  365 (394)
T PRK11652        340 GGLQNIGSGLAALLSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHHHHHHHHHHHHHHccCCchHHH
Confidence            88889999999999998876544443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.46  E-value=3e-09  Score=113.75  Aligned_cols=139  Identities=16%  Similarity=0.208  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 041588           77 TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKER  156 (540)
Q Consensus        77 ~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  156 (540)
                      ..++..+...++..++.+++|+++||+ |               ||++++++.++..++.++..++..            
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-G---------------Rk~~~~~~~~~~~i~~~~~~~~~~------------   98 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-G---------------RKPALIISALLMIIGSILIAFAPS------------   98 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-c---------------cccccccccccccccccccccccc------------
Confidence            467888999999999999999999998 9               999999999999999988887721            


Q ss_pred             CCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc--
Q 041588          157 PCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ--  234 (540)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~--  234 (540)
                            ..+...+.++|++.|++.|+..+....+..|..|++.      |+...++...+..+|.+++..+.-.+.+.  
T Consensus        99 ------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   99 ------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             ------ccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccc
Confidence                  0146778899999999999999999999999999887      88888888888888888877665444332  


Q ss_pred             -cCcchhhhHhHHHHHHHHHHH
Q 041588          235 -KGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       235 -~g~~~~f~i~~~~~~~~~i~~  255 (540)
                       .+||..+.++.+..++.++..
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             cccccccccccccccccccccc
Confidence             359999988777665544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.42  E-value=3.5e-06  Score=88.05  Aligned_cols=177  Identities=12%  Similarity=0.108  Sum_probs=135.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH---QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      -|.+|.+.+........|+..-...+.|.+..++   .+....|.+.+.-...-.+.-.+..++-+|+ |          
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g----------  287 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-G----------  287 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-C----------
Confidence            3677877776666667777777778888876443   3344566777777777778888889999998 9          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           .|+.++++..++++=....+++                     .+.+.+.+...+.++-.+..-.+.--++++.+
T Consensus       288 -----~k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f  341 (412)
T PF01306_consen  288 -----AKNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHF  341 (412)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -----hHhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 9999999999988887777776                     24667778888999888887788888999999


Q ss_pred             CCCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          196 DEADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      |++-      ..+.+.+ +..+..+|..+.+.++|++.|+.|++..|++.+.+.++..++-.+.
T Consensus       342 d~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  342 DKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             -GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence            9876      6677777 5678899999999999999999999988887666655555554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1.9e-05  Score=83.54  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=129.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |....+++..++...++....+.++.|.+..+|.+...+............++.++...+++|+ |              
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-g--------------  300 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-G--------------  300 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--------------
Confidence            5556666677788788877778888888888888888888888888888888899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+++.++.++.+++.+.+.+..                   .++..++++..++.++|.+...+..+++++|..+-++
T Consensus       301 -kk~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge  360 (467)
T COG2211         301 -KKKLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE  360 (467)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence             99999999999999999988873                   1457778888889999999999999999999886543


Q ss_pred             hHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EKE-AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~~-~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      -+. .+.-|..++.+.+..=+|..++..+.|++.+..||.
T Consensus       361 ~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         361 WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            221 112355677788888888888888888776655543

>PRK11462 putative transporter; Provisional

Probab=98.32  E-value=2.8e-05  Score=83.74  Aligned_cols=162  Identities=12%  Similarity=0.076  Sum_probs=98.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |....++...++...+.....+....|.+..+|. ....+.+...+.+...++.+++++++||+ |              
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-g--------------  291 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-C--------------  291 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            3444444455555555554444444444444443 33344556667777888899999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       +|+++..+..+..+..+++.+..   .                .+...+++..++.+++.+...+...++.+|..+.++
T Consensus       292 -kk~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e  351 (460)
T PRK11462        292 -KVTIFWWTNALLAVISLAMFFVP---M----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE  351 (460)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhc---h----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence             88887765554444333332221   0                122233444555677777666777888888876432


Q ss_pred             hHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 041588          200 EKEAIQK--YVFFNWFFFAINMGAIFGITVLVYIQEQKGWS  238 (540)
Q Consensus       200 ~~~~~~r--~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~  238 (540)
                      - +..+|  +..++...++..+|..+++.++|++.+..||.
T Consensus       352 ~-~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~  391 (460)
T PRK11462        352 W-CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD  391 (460)
T ss_pred             H-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            1 11113  34466677888999999999998887766664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.28  E-value=1.6e-05  Score=86.05  Aligned_cols=183  Identities=13%  Similarity=0.051  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCcchhhhhhh
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPT----AGTHVTDWIGAAYVLTILGA----FLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~----a~~~~~~~~~~~~~~~~~gG----~laD~~~G~~~~~~~~~~~  116 (540)
                      +++...+....|.-..+.++.|..+..+.+...    .+.+.+.-.+...+..++-.    ++.||-.+           
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~-----------  345 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD-----------  345 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC-----------
Confidence            344444445555555666788877665543222    34444444444444444433    34443112           


Q ss_pred             hcccchHH--HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          117 KLQGRFRT--LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       117 ~~~~r~~~--i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                          .+..  +.+|.++..++++.+++....-.            +....+.+.+.+..++.++|.....|...++..+.
T Consensus       346 ----~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~  409 (475)
T TIGR00924       346 ----PTTPLKFTLGMLFCGASFLTFAASIWFAD------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKI  409 (475)
T ss_pred             ----CCcHHHHHHHHHHHHHHHHHHHHHHhhcC------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence                2232  36777788888777765411000            01124677888899999999999999999999999


Q ss_pred             CCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          195 YDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       195 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      .|++.      |++.+++++.+..+|..+++.+.....+..||...|...++..++..++++...|
T Consensus       410 aP~~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       410 APQRL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99887      9999999999999999999998888777778888887777766666666555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.27  E-value=0.00012  Score=74.44  Aligned_cols=86  Identities=9%  Similarity=-0.093  Sum_probs=69.7

Q ss_pred             chhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc---------
Q 041588          164 GQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ---------  234 (540)
Q Consensus       164 ~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~---------  234 (540)
                      .+...++++.+++|.|.+..+++.++++++..++++      +.+..++...+..+|+.++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            467889999999999999999999999999998876      77889999999999999999999977632         


Q ss_pred             -------cCcchhhhHhHHHHHHHHHHH
Q 041588          235 -------KGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       235 -------~g~~~~f~i~~~~~~~~~i~~  255 (540)
                             .+|+++|++.+++.++..+++
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   358888875555444433333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=1.4e-05  Score=88.21  Aligned_cols=202  Identities=13%  Similarity=0.148  Sum_probs=144.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+..++....+......+......+-+.+.++++.++.|.+.+.+-+...+...+-.+.+-|. -              
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-H--------------  160 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-H--------------  160 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-C--------------
Confidence            4444444444444344445566666778889999999999999999999999999999999997 6              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCC-------------CC-------------CCCCC--CCCc--cCCC-chhHH
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSL-------------RP-------------PACKE--RPCV--EVNG-GQNGF  168 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-------------~~-------------~~~~~--~~~~--~~~~-~~~~~  168 (540)
                       |-|.+-+|.+++.+|.++.++..++-.-             .+             +.|..  .+|.  +.++ .-...
T Consensus       161 -rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  161 -RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             -ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence             7788889999999999998875322100             01             11111  1121  1222 23447


Q ss_pred             HHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------
Q 041588          169 LLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE---------------  233 (540)
Q Consensus       169 ~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~---------------  233 (540)
                      ++++.++.|+|...+.+.-.+++=|...+++      ....+++++....+|.++|.++++++..               
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~  313 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPT  313 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCC
Confidence            7888899999998888877777766655554      6778899999999999999999987632               


Q ss_pred             ---ccC-cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588          234 ---QKG-WSVGFGIPTAFTICSIIIVAAGFPYYR  263 (540)
Q Consensus       234 ---~~g-~~~~f~i~~~~~~~~~i~~~~~~~~~~  263 (540)
                         ..| |+.+|++++.+.+++.+.++++.++..
T Consensus       314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence               134 999999999988888887777665544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.24  E-value=4e-05  Score=79.11  Aligned_cols=172  Identities=18%  Similarity=0.224  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT  124 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~  124 (540)
                      .+..-+...+++++=-..|-.|--+.+|++..+...+...+.++..++-.+.|++..|-.+               ++++
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~---------------~~~~  277 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLG---------------KKRT  277 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------chHH
Confidence            3333455566666556667788888999999999999999999999999999999886668               8899


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      ..+++.+.++++.++.+++..                  .+.+.+-.+.+++|+|.|.+.....+..-|+..++.     
T Consensus       278 a~~G~~~~~~~f~lii~a~~~------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~-----  334 (403)
T PF03209_consen  278 AALGCLLGALAFALIILAGPL------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR-----  334 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc-----
Confidence            999999999988888877532                  346788899999999999988877777888887765     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------cCcchhhhHhHHHHHHHHHHH
Q 041588          205 QKYVFFNWFFFAINMGAIFGITVLVYIQEQ----------KGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       205 ~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~----------~g~~~~f~i~~~~~~~~~i~~  255 (540)
                       .+.+++.+..+..+...++..++|.+.|.          .+|..+|.+-++..++++++.
T Consensus       335 -aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  335 -AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence             78899999888888888888888876542          246667776666666665554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.23  E-value=7e-05  Score=73.40  Aligned_cols=138  Identities=14%  Similarity=0.021  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHH
Q 041588           55 AFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSV  134 (540)
Q Consensus        55 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~  134 (540)
                      +-|....+ ..-+++.+|+|+++...+...-..+.+++ ++.|.+.|++ |               .+.++++|.+...+
T Consensus        17 t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-g---------------p~~~l~iG~~~~~~   78 (250)
T PF06813_consen   17 TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-G---------------PWVVLLIGAVLGFV   78 (250)
T ss_pred             cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-c---------------hHHHHHHHHHHHHH
Confidence            33444333 45578899999999999999998888875 7889999998 9               99999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHH
Q 041588          135 GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFF  214 (540)
Q Consensus       135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~  214 (540)
                      |+..+.+...-..              .....+.+.+...+.+.+.+....+...-..+.||+ +      ||++.++.-
T Consensus        79 GY~~~~l~~~~~i--------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk  137 (250)
T PF06813_consen   79 GYGLLWLAVSGRI--------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILK  137 (250)
T ss_pred             HHHHHHHHHhCcc--------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhh
Confidence            9998887642111              112344554444455555444444444445689986 4      899888876


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 041588          215 FAINMGAIFGITVLVYI  231 (540)
Q Consensus       215 ~~~~iG~~i~p~v~~~l  231 (540)
                      ....+++.+-..+...+
T Consensus       138 ~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  138 GFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            66666666544443333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.23  E-value=4.9e-06  Score=89.52  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=106.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCcchhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAY---LGQPALKHVHAIF  116 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~---~G~~~~~~~~~~~  116 (540)
                      ..+|...+..++.....|++..|+|.|+++..|+|..+++.+...+.++..++.++.|+++||.   ..           
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~-----------  341 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA-----------  341 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH-----------
Confidence            4568899999999999999999999999986789999999999999999999999999999994   25           


Q ss_pred             hcccchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          117 KLQGRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                          +|.....+..++.+ |.+.+.....                     ......+.+....+.+...++......+..
T Consensus       342 ----~~~~~~~~~~~~~~~g~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~  396 (495)
T KOG2533|consen  342 ----RRLLFIVFLCLYAIIGAISLLAAAV---------------------LPGAYGAFLIGPYGLIATAIIALSWTSANL  396 (495)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhcc---------------------chHHhHHHHhcchhhHHHHHHHHhhccccc
Confidence                66666665554433 4444443311                     112222222222223333344444444555


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHhhhhccCcchhhhHh
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGIT-VLVYIQEQKGWSVGFGIP  244 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~-v~~~l~~~~g~~~~f~i~  244 (540)
                      .++.     ++-+..+.+..+.+.++.++|. ..+.....++|...|...
T Consensus       397 ~g~~-----k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  397 AGNT-----KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML  441 (495)
T ss_pred             cchH-----HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence            4433     2555555555555555555444 345555567888888543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.22  E-value=3.4e-05  Score=79.10  Aligned_cols=154  Identities=16%  Similarity=0.071  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.-.+..|+---+=-.+.++++.|+.+..|++..++...++.+.++..++..+|-++-.|+ -               ..
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~---------------~~  302 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-K---------------PE  302 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------HH
Confidence            3333344443333334568999999998999999999999999999999999999998887 7               77


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      |.+.....+..+-.+...+..                     + ..-+.++.++|+..+...|...+...+..|++.+  
T Consensus       303 k~Laf~a~~~ill~~~~~l~~---------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--  358 (422)
T COG0738         303 KYLAFYALIAILLLLAVALIG---------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--  358 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--
Confidence            877777655554444444442                     1 2344566788889999999999999999985442  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhh
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFG  242 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~  242 (540)
                         .++   -.-....+|+.+.|.+.|++.|+.|-...+.
T Consensus       359 ---~~s---~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         359 ---VGS---GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ---ccc---eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence               222   2233556899999999999999998777665

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.22  E-value=6e-05  Score=79.92  Aligned_cols=168  Identities=14%  Similarity=0.025  Sum_probs=106.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...+..++....++....++|.|+.+.+|++..+.+.......++..++..+.+.+.++. +              
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~--------------  282 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-T--------------  282 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--------------
Confidence            5667776767777777888888889999999999999999887767777777666666655443 3              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ++|.+.....+..++.+++.......                .......+++..+.++|.+...|+..+..-  .+.+.
T Consensus       283 -~~~~~~~~~~~~~ig~~l~~~~~~~~----------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~  343 (413)
T PRK15403        283 -EPRFIWRAVPIQLVGLALLIVGNLLW----------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL  343 (413)
T ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHc----------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC
Confidence             44444433334444444443321000                012333466777788888887777764332  22222


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAF  247 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~  247 (540)
                      +     +++..+.++.....+...++.+.+++.++ +-.+.|....++
T Consensus       344 ~-----~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        344 P-----KGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            1     56666777777777777888888888765 445566544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.16  E-value=3e-07  Score=100.36  Aligned_cols=193  Identities=12%  Similarity=0.129  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHH
Q 041588           48 NEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVV  127 (540)
Q Consensus        48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~  127 (540)
                      ..+.. ...++.......-+.+.++++.+++|++.+.+-++..+..++..++.+|. -               |-|.+-+
T Consensus        11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-h---------------rprwig~   73 (539)
T PF03137_consen   11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-H---------------RPRWIGI   73 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C---------------Ccceeee
Confidence            33344 55555555555667889999999999999999999999999999999986 6               7788888


Q ss_pred             HHHHHHHHHHHHHHhcccCCCC-CCC-----CCC----CCC---------------cc----CCCchhHHHHHHHHHHHH
Q 041588          128 FSCIYSVGMVLLTVSGSLDSLR-PPA-----CKE----RPC---------------VE----VNGGQNGFLLCALGLIAL  178 (540)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~-~~~-----~~~----~~~---------------~~----~~~~~~~~~~~~~~l~~~  178 (540)
                      |.+++.+|.+++++..++.... +.+     |..    ..|               ..    ........++++.++.|+
T Consensus        74 g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi  153 (539)
T PF03137_consen   74 GALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI  153 (539)
T ss_dssp             ------------------------------------------------------------------------------SS
T ss_pred             cHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc
Confidence            9899999999998865432111 000     000    012               11    112235677888899999


Q ss_pred             hcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------------ccC-
Q 041588          179 GTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE---------------------QKG-  236 (540)
Q Consensus       179 g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~---------------------~~g-  236 (540)
                      |.....+.-.+++=|..++++      -...+++++.+..+|.++|.++++.+..                     ..| 
T Consensus       154 G~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA  227 (539)
T PF03137_consen  154 GATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA  227 (539)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             cccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence            998888888888877776665      6778899999999999999888876431                     134 


Q ss_pred             cchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588          237 WSVGFGIPTAFTICSIIIVAAGFPYYR  263 (540)
Q Consensus       237 ~~~~f~i~~~~~~~~~i~~~~~~~~~~  263 (540)
                      |+.+|.+.+++.++..+.++.+.|+..
T Consensus       228 WWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  228 WWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            999998888877777666665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.05  E-value=0.00032  Score=78.33  Aligned_cols=289  Identities=12%  Similarity=-0.065  Sum_probs=198.0

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041588           71 MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRP  150 (540)
Q Consensus        71 lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~  150 (540)
                      .+...-.......++....+++++.+...+|-.-|               +...+....+..+++.+.+.+.+. ...  
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---------------~lG~~~tIl~~~ii~~lG~~llai-~a~--   76 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---------------WLGKFKTILYLSIVYVVGHALLSF-GAI--   76 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhHHHHHHHHHHHHHHHHHHHh-ccC--
Confidence            33444456778889999999999999999999988               889999998888888888877642 110  


Q ss_pred             CCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 041588          151 PACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVY  230 (540)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~  230 (540)
                                +.........+.++.++++.++..++.+.+.+++.+..+   ..++....++|++..+.+.+. .+++..
T Consensus        77 ----------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~  142 (654)
T TIGR00926        77 ----------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTI  142 (654)
T ss_pred             ----------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHH
Confidence                      112223445567777889999999999999999997765   244567999999999988764 556666


Q ss_pred             hhhccC-cch-------hhhHhHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHhhccCccccCccchhhhc
Q 041588          231 IQEQKG-WSV-------GFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVT  302 (540)
Q Consensus       231 l~~~~g-~~~-------~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  302 (540)
                      +..... +..       .++..++.+++.++.++.+...++..++.+.+...+.++++......+.+             
T Consensus       143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~-------------  209 (654)
T TIGR00926       143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR-------------  209 (654)
T ss_pred             HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh-------------
Confidence            655443 332       22244555566666667776666655555443333444433332211100             


Q ss_pred             cccccccccccccCCCchhhhhhhhhccCcccccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041588          303 TKESDIFGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLC--TLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLS  380 (540)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~  380 (540)
                                 ..+      .+..         .+..|-.+  ....+++++...+++.++...+.+++.+.|.......
T Consensus       210 -----------~~~------~~~~---------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~  263 (654)
T TIGR00926       210 -----------FST------RSEH---------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSR  263 (654)
T ss_pred             -----------hcc------CCcc---------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence                       000      0000         00122211  2333467889999999999999999999998888899


Q ss_pred             HHHhhccCCCCCceecCCCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCC
Q 041588          381 QAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQTQ  431 (540)
Q Consensus       381 q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~  431 (540)
                      +..++++..+ .+...+...+.++++..++.+++...+.+|+.++..+...
T Consensus       264 ~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~  313 (654)
T TIGR00926       264 WTLQATRMDG-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT  313 (654)
T ss_pred             HHHHHHHhcC-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC
Confidence            9889988755 4444556688999999999999999998899999865556

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.01  E-value=0.00012  Score=78.66  Aligned_cols=208  Identities=10%  Similarity=-0.001  Sum_probs=136.7

Q ss_pred             cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChh------HH---HH-HHHHHHHHHHHHHHHHHHHhh
Q 041588           33 KRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVR-EMHQSLP------TA---GT-HVTDWIGAAYVLTILGAFLAD  101 (540)
Q Consensus        33 ~~~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~------~a---~~-~~~~~~~~~~~~~~~gG~laD  101 (540)
                      +..+.-+|.++.+++++++.-++++.+..+.+.|..+ .+|-++.      ++   |. ....+.....+..++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778999999999999999999999888888875 3443221      11   22 222223333344555566788


Q ss_pred             hhcCCCcchhhhhhhhcccch-HHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCccCCCchhHHHHHHHHHHHHh
Q 041588          102 AYLGQPALKHVHAIFKLQGRF-RTLVVFSCIYSVGMVLLTVSGSLDS-LRPPACKERPCVEVNGGQNGFLLCALGLIALG  179 (540)
Q Consensus       102 ~~~G~~~~~~~~~~~~~~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  179 (540)
                      ++ |               +| ++..++.++..+++....+..+... .++.+ ++..--+++.......++...++|+.
T Consensus       331 ~~-g---------------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Gi~  393 (477)
T TIGR01301       331 GW-G---------------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYD-GDGESLPPPTGIKASALIVFAILGIP  393 (477)
T ss_pred             Hh-c---------------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccc-ccccccCcchhhHHHHHHHHHHhhHH
Confidence            76 7               74 5557777777777777765432110 00000 00000011112235566677789999


Q ss_pred             cCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC--cchhhhHhHHHHHHHHHHHHh
Q 041588          180 TRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG--WSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       180 ~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g--~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      ++.......+++++..++++.    +.|..++++|.++.+.-++..+..|.+.+..|  -...+.+.++.++++.+..+.
T Consensus       394 ~A~~~siPfal~s~~~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       394 LAITYSIPFALASIRSSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             HHHHHHHhHHHHHHHccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            999999999999998885432    26889999999999999988887777655544  566777788888888777766


Q ss_pred             cCcc
Q 041588          258 GFPY  261 (540)
Q Consensus       258 ~~~~  261 (540)
                      ..|+
T Consensus       470 ~~~~  473 (477)
T TIGR01301       470 LLPR  473 (477)
T ss_pred             hCCC
Confidence            6664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.99  E-value=0.00031  Score=68.82  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHhhHhcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHH
Q 041588           54 LAFFAIAVNMTAYLVREMHQSL--PTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCI  131 (540)
Q Consensus        54 ~~~y~~~~~l~~yl~~~lg~s~--~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~  131 (540)
                      .........++.+.. +++.+.  ...+.....+.....++.++.|.++||+ |               ||+.+..+...
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------~~~~~~~~~~~   78 (338)
T COG0477          16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-G---------------RRKVLIIGLLL   78 (338)
T ss_pred             HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-c---------------chHHHHHHHHH
Confidence            333333344455444 444444  4678888888888888889999999998 9               99888888776


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHH
Q 041588          132 YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFN  211 (540)
Q Consensus       132 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~  211 (540)
                      ..++.+...+...                   .....+++.+.+.+++.+...+...++..|.+|+ .    .+|+...+
T Consensus        79 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~  134 (338)
T COG0477          79 FLLGTLLLALAPN-------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVG  134 (338)
T ss_pred             HHHHHHHHHhCcc-------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHH
Confidence            5555455544421                   2356677777778899888889999999999987 1    12777888


Q ss_pred             HHHH-HHHHHHHHHHHHHHhhhhc--cCcchhhhHhHHH
Q 041588          212 WFFF-AINMGAIFGITVLVYIQEQ--KGWSVGFGIPTAF  247 (540)
Q Consensus       212 ~~~~-~~~iG~~i~p~v~~~l~~~--~g~~~~f~i~~~~  247 (540)
                      .... ...+|..++|.+++.+...  .+|+..|.+....
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         135 LVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            8777 5778888888777766554  5688755544333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.97  E-value=5.5e-08  Score=103.99  Aligned_cols=188  Identities=12%  Similarity=0.037  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      .....+....+..+..+....+...++.+..+.+..  ........+...++.+++.++.||+ |               
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-G---------------  314 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-G---------------  314 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-c---------------
Confidence            334444444444444433334444455556676666  2222333455667777888999998 9               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcC-CCccchhhhhhccCCCCC
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTR-DIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g-~~~~~~~~~~~d~~~~~~  199 (540)
                      ||++++.+..+.+++.+.++... ......          +...+.. .+....+...+.+ +..+....+.+|.||.+.
T Consensus       315 Rr~~~i~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~  382 (451)
T PF00083_consen  315 RRKLLIIGLLLMAICSLILGIIF-FLGVSS----------SSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV  382 (451)
T ss_pred             ccccccccccccccccccccccc-cccccc----------ccccccc-cceeeeeccccccccccccccccccccccccc
Confidence            99999999988887777665111 010000          0000111 1112222222222 344666788899999998


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRY  264 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~  264 (540)
                            |.++.++.+....+++++++.+..++.+..+-...|.+.+++.+++.++..+..|+.+.
T Consensus       383 ------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  383 ------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             ------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence                  99999998888899999999888888877763445555566656666665566666543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.92  E-value=0.00014  Score=78.94  Aligned_cols=179  Identities=12%  Similarity=0.062  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchH-
Q 041588           49 EVAERLAFFAIAVNMTAYLVREMHQSLP----TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFR-  123 (540)
Q Consensus        49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~----~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~-  123 (540)
                      ..+....+......++.|..+..+.+..    .+..+.+...+...+..++.|++.||+ |               +|+ 
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~---------------~r~~  341 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-G---------------SKGK  341 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-h---------------hCCC
Confidence            3334444555556777887653332211    122333333344556677778999998 8               776 


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          124 ------TLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       124 ------~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                            -+.+|.++..++++.++........           .....+.+.+....++.++|.++..|...++..+..|+
T Consensus       342 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~  410 (489)
T PRK10207        342 DLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ  410 (489)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH
Confidence                  3667777777777655432110000           00112456667778899999999999999999999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      +.      ++.+.+.++...++|+.++..++.+...          ...+.+.|...++..+++.++++...|
T Consensus       411 ~~------~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        411 HL------MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87      8999999999999999998877765521          112455665555555544444444344

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.91  E-value=0.00012  Score=58.19  Aligned_cols=68  Identities=18%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHH
Q 041588           47 VNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLV  126 (540)
Q Consensus        47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~  126 (540)
                      ...++...+...+.++++.|+. +.|++..+.|.+.++......+++++.|+++||+ |               |+|.++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~---------------~~~~~l   69 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-G---------------KRKVIL   69 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------------ccHHHH
Confidence            3445555666667899999998 4999999999999999999999999999999998 8               888887


Q ss_pred             HHHHH
Q 041588          127 VFSCI  131 (540)
Q Consensus       127 ~~~~~  131 (540)
                      .+..+
T Consensus        70 ~~~~~   74 (77)
T PF12832_consen   70 LGSLF   74 (77)
T ss_pred             HHHHH
Confidence            76644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.87  E-value=0.00028  Score=76.85  Aligned_cols=179  Identities=12%  Similarity=0.018  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhH--hcCCChh------HHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCcchhhhhh
Q 041588           48 NEVAERLAFFAIAVNMTAYLVR--EMHQSLP------TAGTHVTDWIGAAYVLTILGA----FLADAYLGQPALKHVHAI  115 (540)
Q Consensus        48 ~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~------~a~~~~~~~~~~~~~~~~~gG----~laD~~~G~~~~~~~~~~  115 (540)
                      ..++....||.+...++.++..  ..+.+..      ..+.+.+.-.+...++.++.+    ++.||+ +          
T Consensus       280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~----------  348 (500)
T PRK09584        280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-P----------  348 (500)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-C----------
Confidence            3446667778777777777653  1111111      133344444444455555554    444443 4          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           ..+.+.+|.++..++++.+........    +        ....+.+.+....+++++|.++..|...+++.+..
T Consensus       349 -----~~~~~~~G~~l~~l~f~~l~~~~~~~~----~--------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a  411 (500)
T PRK09584        349 -----MPHKFAIGMVLCSGAFLVLPLGAKFAN----D--------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV  411 (500)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHhcC----C--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence                 667788888999999888877632111    0        01124557788889999999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE----------QKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~----------~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      |++.      |+..++.++++..+|+.++..+.+....          ..++...|...++..++..++++...+
T Consensus       412 P~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        412 PQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             cHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987      9999999988888888877666643221          113566776655555444444444333

>TIGR00788 fbt folate/biopterin transporter

Probab=97.82  E-value=5e-05  Score=81.95  Aligned_cols=148  Identities=8%  Similarity=-0.097  Sum_probs=109.9

Q ss_pred             hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCC
Q 041588           68 VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDS  147 (540)
Q Consensus        68 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~  147 (540)
                      .+.+|++..+.|.......++..++..+.+++.+|+ +               .|+++.++.++..++.+...+...-..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~---------------~r~~l~~~~~l~~~~~~~~~~l~~~~~  343 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-P---------------YRLLFGVTTLLYTLSSLFDLILVKRWN  343 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-C---------------HHHHHHHHHHHHHHHHhCceeeeeccc
Confidence            457999999999999999888889999999998887 9               999999999888887755432211000


Q ss_pred             CCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041588          148 LRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV  227 (540)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v  227 (540)
                      ..           ..-.....++...++.+++.+........+..+..|++.      +++.++++....|+|..+++.+
T Consensus       344 ~~-----------~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       344 LA-----------FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             cc-----------cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHH
Confidence            00           000112234444566777777777777888999999887      8999999999999999999999


Q ss_pred             HHhhhhccC-----cchhhhHhHHHH
Q 041588          228 LVYIQEQKG-----WSVGFGIPTAFT  248 (540)
Q Consensus       228 ~~~l~~~~g-----~~~~f~i~~~~~  248 (540)
                      ++++.+..|     ++..+....+..
T Consensus       407 gg~l~~~~g~~~~~~~~~~~~i~i~~  432 (468)
T TIGR00788       407 GVLLMETIGITCDNSNNLWLLILGHS  432 (468)
T ss_pred             HHHHHHHcCCCcccccchHHHHHHHH
Confidence            999998877     665555443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.65  E-value=3.9e-05  Score=79.74  Aligned_cols=181  Identities=12%  Similarity=-0.001  Sum_probs=122.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH--------HHHHHHHHHHH-HHHHHHHHhhhhcCCCcch
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGT--------HVTDWIGAAYV-LTILGAFLADAYLGQPALK  110 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~--------~~~~~~~~~~~-~~~~gG~laD~~~G~~~~~  110 (540)
                      +.....++..|...+++|+...+...-+. .+|+.+.+...        ...+.....++ +..++.++.|++ |     
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-G-----  376 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-G-----  376 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-h-----
Confidence            55666778888889999988776655443 45554443322        11112222222 445566679998 9     


Q ss_pred             hhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh
Q 041588          111 HVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF  190 (540)
Q Consensus       111 ~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~  190 (540)
                                ||+..+.+.+++.+.++.++..-..   .           .  .....+..--+.+-++.-+..+..-..
T Consensus       377 ----------Rk~iq~~GF~~~~i~~~~~~~~y~~---~-----------~--~~~Gf~v~y~l~~ff~NFGPn~ttfiv  430 (538)
T KOG0252|consen  377 ----------RKYIQLMGFFIMTIFFFVIAGPYNQ---L-----------E--NTIGFVVLYSLTFFFGNFGPNATTFIV  430 (538)
T ss_pred             ----------hHHHHHhhHHHHHHHHHHHcCCccc---c-----------c--ccCceeehHHHHHHHHhcCCCceeEEe
Confidence                      9999999999988888877765210   0           1  112222222223334444444555555


Q ss_pred             hhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-----ccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          191 GADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQE-----QKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       191 ~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~-----~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      .+|.||.+.      |++..++.-.++-.|++++.....++.+     ..|.+..|++.+.++.++.++.++..
T Consensus       431 paE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  431 PAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             ehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            689999988      9999999999999999999999999998     77899999998888888877765543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.036  Score=59.04  Aligned_cols=80  Identities=10%  Similarity=0.062  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccC
Q 041588           82 VTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEV  161 (540)
Q Consensus        82 ~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (540)
                      ..+-.....+++++++.+-|.+ |               .|..+.+++..+..-.+.+...                   
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~---------------~K~~lv~ga~~y~~f~~gfl~~-------------------  100 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-G---------------PKWALVIGATCYAAFPLGFLFP-------------------  100 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-h---------------HHHHHHHHhHHHHHHHHHHHhc-------------------
Confidence            5555667778899999999997 9               9999999998777765555443                   


Q ss_pred             CCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          162 NGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       162 ~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                         +...++.+-+++|+|.+..+.....+.++...++.
T Consensus       101 ---N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen  101 ---NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             ---chHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence               35678889999999999999888888888776654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.59  E-value=0.0012  Score=74.01  Aligned_cols=85  Identities=18%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.++...+..++...+++++.+++|.|+.+.+|++..+++.+.+...+ +..++.+++|+++||+ +             
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~-------------  395 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-K-------------  395 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-c-------------
Confidence            567888889999999999999999999999999999999999887665 5678999999999997 6             


Q ss_pred             ccchHHHHHHHHHHHHHHHH
Q 041588          119 QGRFRTLVVFSCIYSVGMVL  138 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~  138 (540)
                      ...|+.+..+.++.+++.++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       396 LNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            00235555565555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.58  E-value=0.0073  Score=64.39  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588           55 AFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL  104 (540)
Q Consensus        55 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~  104 (540)
                      .+-.+.+.++.|.. ++|++..+.|.+++.--++..+..|+.|++|||+-
T Consensus        26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r   74 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYR   74 (618)
T ss_pred             cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence            34446788899986 69999999999999999999999999999999993

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=8e-05  Score=76.16  Aligned_cols=181  Identities=12%  Similarity=-0.025  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +...+.-...+...-..-+-++++..+.+..+.-+.|+...-..+.+.+++.+.|.++||+ +               .-
T Consensus       273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~---------------~~  336 (464)
T KOG3764|consen  273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-P---------------HL  336 (464)
T ss_pred             hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-C---------------ch
Confidence            3344333333444444556778888888874444777777767778889999999999998 8               65


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+.....+..+|.......    .               .++...+++-...++++.+...+...+..+...+.+...+
T Consensus       337 ~wl~~~~gl~~~G~~~~~iP----~---------------~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~  397 (464)
T KOG3764|consen  337 RWLLSLGGLATVGVSSGPIP----F---------------ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSG  397 (464)
T ss_pred             hHHHHHHHHHHHHHHhchhH----h---------------hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccc
Confidence            55555544555553332221    1               1345566666667777777777666666666665543211


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      -..-++.+++...+..+|..+||.++|.+.+..|++|.-.+.++..++..-++...
T Consensus       398 ~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  398 FNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             cceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11246788889999999999999999999999999987766666655544444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.51  E-value=0.0025  Score=69.69  Aligned_cols=193  Identities=14%  Similarity=0.047  Sum_probs=99.8

Q ss_pred             cchHHHHHHHHHHHH-HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           39 WKASPFIIVNEVAER-LAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~-~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +|.....+....+.. .++..+..+.+..+ +..|.+... .....+......++..+++++.||+ |            
T Consensus       293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-g------------  357 (513)
T KOG0254|consen  293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-G------------  357 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence            344333333333333 33333444444443 455665443 4445555666777888889999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||+.++.+...+.+++++++..........+      +  ........+....+.+.....+..|..+.+.+|.||.
T Consensus       358 ---Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~  426 (513)
T KOG0254|consen  358 ---RRKLLLFGAAGMSICLVILAVVGVFALYYPN------S--SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL  426 (513)
T ss_pred             ---cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC------c--ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence               9999999999999999988876432211000      0  0001111222222223333333446666788999999


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH-HHHhcCcccc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII-IVAAGFPYYR  263 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i-~~~~~~~~~~  263 (540)
                      +.      |+.+.++-.....+...+-......+.+..++...|........++.+ .+.+..|+.+
T Consensus       427 ~~------r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  427 RL------RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             hH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            87      666665533333222222222222222322233444444444444444 3444555543

>PTZ00207 hypothetical protein; Provisional

Probab=97.48  E-value=0.00097  Score=73.43  Aligned_cols=185  Identities=10%  Similarity=0.025  Sum_probs=127.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-CCChhH--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-chhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREM-HQSLPT--AGTHVTDWIGAAYVLTILGAFLADAYLGQPA-LKHVHAI  115 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~l-g~s~~~--a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~-~~~~~~~  115 (540)
                      ..+|++++..++..-+--.+.-|+ -++-+.+ |.+.++  ...++++..+..+++.+.+|+++.-. -+.+ .+.+   
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~---  427 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRV---  427 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhcccccc---
Confidence            467888888777766655555554 3344567 763322  22378889999999999999999433 3111 1112   


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                           .|...+....++.++.+++.+..  |                   ...++++-+++|++.|...+...+..+|+|
T Consensus       428 -----prt~~l~~~~~~~~~~lll~~~~--p-------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF  481 (591)
T PTZ00207        428 -----PITIALFIPSVCIITMLTLFLTL--P-------------------KAALPLPYFIAAFANGFMAATIALVTRTIF  481 (591)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHC--C-------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence                 33333333334777777777661  1                   146899999999999999999999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHhhhhc-------------cCcchhhhHhHHHHHHHHHHHHhcCcc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFG-ITVLVYIQEQ-------------KGWSVGFGIPTAFTICSIIIVAAGFPY  261 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~-p~v~~~l~~~-------------~g~~~~f~i~~~~~~~~~i~~~~~~~~  261 (540)
                      . ++      -++-+|....++-+|+.+- -.+.|.+.|.             .-++..|.+.++..+++.++-....-+
T Consensus       482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R  554 (591)
T PTZ00207        482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ  554 (591)
T ss_pred             c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence            9 65      6888888888888888764 5566766542             138889988888888777775555444


Q ss_pred             c
Q 041588          262 Y  262 (540)
Q Consensus       262 ~  262 (540)
                      +
T Consensus       555 ~  555 (591)
T PTZ00207        555 Y  555 (591)
T ss_pred             h
Confidence            3

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.43  E-value=0.08  Score=56.25  Aligned_cols=197  Identities=8%  Similarity=-0.107  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..+.+....++.++.-=+...-.+.|+.+-+.-+.--++..-..-.+...++.+.-|...||. -               
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~---------------   66 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-P---------------   66 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-c---------------
Confidence            446667777777776666666677888765543333333333333445556666677778997 7               


Q ss_pred             chHHHHHHHHHHH----HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHH-HHHHHHHhcCCCccchhhhhhccC
Q 041588          121 RFRTLVVFSCIYS----VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLC-ALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       121 r~~~i~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                      |.|++..+.+..-    ++..++......+...        .  .+......+++ ..++.++..=+......++--|+.
T Consensus        67 Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~--------~--~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWV  136 (432)
T PF06963_consen   67 RLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS--------S--QSSWLFIALFALLILLGAIERLASIANTIAVERDWV  136 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc--------c--ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchh
Confidence            8887777665422    2222222211111100        0  00111122222 222222222122222233333443


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHH-HHhcCcccc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIII-VAAGFPYYR  263 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~-~~~~~~~~~  263 (540)
                      ..=..+....+....+...=.=-+.-+++|++.|.+.+..|...+..+.++..+++.++ +++..+-|+
T Consensus       137 vvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~  205 (432)
T PF06963_consen  137 VVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN  205 (432)
T ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21111111113333333333334456689999999988888888777777777777776 344444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.23  E-value=0.0013  Score=69.79  Aligned_cols=173  Identities=9%  Similarity=-0.026  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHH
Q 041588           46 IVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTL  125 (540)
Q Consensus        46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i  125 (540)
                      ++..++..+..-.+.++|--++. +++....-.|.....-..+-.+.-++.+++-.++ |               +-+++
T Consensus       377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-G---------------Hv~v~  439 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-G---------------HVNVM  439 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-c---------------cccee
Confidence            33444444444445566644544 5665555566556666666777788889999998 9               99999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588          126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ  205 (540)
Q Consensus       126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~  205 (540)
                      ..++....+=++.+...                     .+.|..+..-++.|+..+.++.++.+++++..|++-      
T Consensus       440 ~lgLa~~~~Rf~~~S~L---------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------  492 (618)
T KOG3762|consen  440 YLGLACNVGRFLYYSYL---------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------  492 (618)
T ss_pred             eehhhHHHHHHHHHHHh---------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------
Confidence            99998888887777776                     356677777789999999999999999999999987      


Q ss_pred             hhhhHHHHH-HHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588          206 KYVFFNWFF-FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY  262 (540)
Q Consensus       206 r~~~~~~~~-~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~  262 (540)
                      |.++-++.. ..-.+|-.+|.+++|.+.+.+|=+..|.++++..++.++.+....+..
T Consensus       493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            555555532 233566677778889888888888889888887777777766655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.03  E-value=0.0065  Score=63.53  Aligned_cols=185  Identities=17%  Similarity=0.063  Sum_probs=113.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +.+..++.........||+..+.|-.-+ ..-|++...+|.+.....+...++.++.|.++||.-.              
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~--------------  330 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK--------------  330 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh--------------
Confidence            4555555555666666776655544333 3567777889999999999999999999999999833              


Q ss_pred             cchHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc-cCCC
Q 041588          120 GRFRTLVVFSCIYSVGM-VLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD-QYDE  197 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d-~~~~  197 (540)
                       -|+++++......++. .+.....                 .. .....++....+.|....+..|.-.-+..| -||.
T Consensus       331 -fk~~~~v~~~~~~v~~~~l~~~t~-----------------~~-~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv  391 (480)
T KOG2563|consen  331 -FKLTTLVLYLFALVGTLMLLTCTL-----------------FL-GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPV  391 (480)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhc-----------------cC-CceEehhhhHHHHHHhhcCCCCcceeeeeeecccc
Confidence             4455555555555553 2222221                 11 123445555556666666666766666654 4455


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC----cchhhhHhHHHHHHHHHHHHhcCcccccc
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG----WSVGFGIPTAFTICSIIIVAAGFPYYRYQ  265 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g----~~~~f~i~~~~~~~~~i~~~~~~~~~~~~  265 (540)
                      .+       ++-.|..+...++-+.+-..+.+...+..+    +...-+..+....+.+++..+.+++|+..
T Consensus       392 ~E-------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  392 AE-------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             CC-------cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            44       344455556666666666666677766655    33333344555666677777777777644

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.99  E-value=0.024  Score=51.41  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 041588           79 GTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPC  158 (540)
Q Consensus        79 ~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (540)
                      ..-.++..+...++.+++..+.+++ |               .|++++++.+.+.+-.......                
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~l-g---------------~K~sm~lg~~~y~~y~~~~~~~----------------   87 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKL-G---------------PKWSMILGSLGYAIYIASFFYP----------------   87 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-h---------------hHHHHHHHHHHHHHHHHHHHhh----------------
Confidence            3444455566677778888888987 9               9999999997776544433322                


Q ss_pred             ccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588          159 VEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~  228 (540)
                            +...++.+-++.|+|.+..+.+...++.+.-++++      +++..+++....+.+.++|.++.
T Consensus        88 ------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   88 ------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             ------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence                  35677888889999999999999999887765544      55555665555555555555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.88  E-value=0.021  Score=62.89  Aligned_cols=154  Identities=10%  Similarity=0.001  Sum_probs=99.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP---TAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVH  113 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~---~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~  113 (540)
                      +++|.+...++..++....||.+..+.|......++-+..   ..+........+..++.++.|++.-++ |        
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r--------  377 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-R--------  377 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-c--------
Confidence            3457777778888899999999888888887777766553   456666666667777788888888776 7        


Q ss_pred             hhhhcccchHHHH-HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhh
Q 041588          114 AIFKLQGRFRTLV-VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGA  192 (540)
Q Consensus       114 ~~~~~~~r~~~i~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~  192 (540)
                             |.|-.+ ++.+++.++..+++...                 +++.  ...+...++.++|.|...........
T Consensus       378 -------~~Kw~li~~~~~~ta~~Gama~~~-----------------~~n~--~~~i~~~~l~g~giG~~~~~~~~~~q  431 (599)
T PF06609_consen  378 -------HIKWQLIFGSVLMTAFCGAMAAVR-----------------PDNK--NAAIAFLVLAGFGIGGILVPAIVIAQ  431 (599)
T ss_pred             -------chhHHHHHHHHHHHHHHHHHHHcc-----------------CCCc--chHHHHHHHHHHhHHHHHHHHHHeeE
Confidence                   666654 45555555555554331                 1112  22334455667777765544444443


Q ss_pred             ccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588          193 DQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI  231 (540)
Q Consensus       193 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l  231 (540)
                      -..|+++      .++..++....-.+|+.++..+-.-+
T Consensus       432 l~~p~~~------ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  432 LIVPDED------IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             eeeCchH------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3345544      78888888788888888777665433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.13  Score=52.80  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcCCCcc
Q 041588           35 TTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLAD-----AYLGQPAL  109 (540)
Q Consensus        35 ~~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD-----~~~G~~~~  109 (540)
                      .++..++++.+++..+....-. |...-+|..++ .-|.|.++.+.....+  .=+-.-++...+.|     |+ |    
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-G----   96 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-G----   96 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-c----
Confidence            4555677777777777666554 44445566554 5677777665544333  23344667888888     76 9    


Q ss_pred             hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588          110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS  189 (540)
Q Consensus       110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~  189 (540)
                                 |||.-++-+ -+.+|.+++.++...+...    ++    +...++...+-...+++-++.+.-.-++-+
T Consensus        97 -----------rrksWvvp~-q~llG~~mllLs~~v~~~~----g~----ng~~p~v~~lt~~f~LLnflaAtQDIAVDg  156 (510)
T KOG3574|consen   97 -----------RRKSWVVPC-QYLLGLFMLLLSYLVDRGL----GG----NGGLPNVVALTLLFLLLNFLAATQDIAVDG  156 (510)
T ss_pred             -----------cccceeeeh-HHHHHHHHHHHhhCCCccc----cc----CCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Confidence                       998866542 3344555555543222111    00    011122333333444555666655556666


Q ss_pred             hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588          190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~  228 (540)
                      ..-.+..+++      .+-+-.....+.|.|.+++..+.
T Consensus       157 wALtmLs~e~------lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  157 WALTMLSREN------LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHhcCHhh------cCchhHHHHHHHhhhHHhhccee
Confidence            6656665555      66666667777788887776553

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.74  E-value=0.013  Score=59.98  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYL-VREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      ..+.++....+.....|....+...++ ...+|+++.+.|-+...-.....+.++.-+...||..|              
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~--------------  326 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG--------------  326 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc--------------
Confidence            455555544444444444444445554 56799999999988877766666777777777777755              


Q ss_pred             cchHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCIYSV-GMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       .-+..+.-..+.++ ..+++...                     .....++++..+-.+..+...++...++....|.+
T Consensus       327 -~~~a~l~~~l~~~vP~~llls~~---------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~  384 (451)
T KOG2615|consen  327 -NIKAVLLFSLLLIVPAFLLLSLA---------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS  384 (451)
T ss_pred             -chhhHHHHHHHHHHHHHHHHhcc---------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc
Confidence             33333333333222 33333332                     23466888888999999888999999998888887


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                      .      |++..++....+.++=++||.++|.+...
T Consensus       385 q------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  385 Q------RGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             c------chHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            6      99999999999999999999999887643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.71  E-value=0.018  Score=61.79  Aligned_cols=151  Identities=10%  Similarity=0.020  Sum_probs=111.7

Q ss_pred             CcchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFF-AIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y-~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      +.|..+.+++..++...--. +-.-.++.|+...++++.++.+...+.......++.++...+--+.+|           
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~-----------  306 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILG-----------  306 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            33455554444333322222 112144678888999999999999999999999998888744444459           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          -++++.+|.....+...+.+++.                     +.+..+.+..+.+ ..+...|...++.+.+.+
T Consensus       307 ----~~~~i~lGl~~~~~~~~~~af~~---------------------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~  360 (463)
T KOG2816|consen  307 ----EKRLISLGLLSEFLQLLLFAFAT---------------------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVS  360 (463)
T ss_pred             ----hhhHhhHHHHHHHHHHHHHHHhc---------------------cchhhhHHHHHHH-hhcchhHHHHhHHHhhcc
Confidence                88899999999999999998872                     3455565554444 455677899999999998


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI  231 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l  231 (540)
                      +++      ++..+++....-.+.++++|.+-+.+
T Consensus       361 ~~e------~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  361 PEE------QGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             ccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            887      89999999999999999998887755

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.71  E-value=0.0028  Score=66.17  Aligned_cols=170  Identities=13%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      +....+..+.+...+.+-.=.++++.|+. .+|.+.+-.+++-.+--+...+.+++-|..|||+ .           |-.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc-~-----------sr~   98 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRC-T-----------SRY   98 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceeccccccccccc-c-----------ccc
Confidence            45555666666666766666788888885 6899888777777777777888899999999987 2           112


Q ss_pred             cchHHHHH-HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVV-FSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                      ||||..+. +....+++..++..++-+-..   -|++ .-.+........++++..+.=+..-..+...-++.+|+...+
T Consensus        99 GRRRPfI~~~s~~i~~~l~Lig~aaDig~~---lgd~-~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d  174 (498)
T KOG0637|consen   99 GRRRPFILAGSLLIAVSLFLIGYAADIGLL---LGDN-ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD  174 (498)
T ss_pred             ccccchHHHhhHHHHHHHhhhhhHhhhhHH---hcCC-cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh
Confidence            26666555 555677777777766421110   0111 000012234566677777777777677788889999998766


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYI  231 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l  231 (540)
                      +.+     .++.+++.+...+|+.+|..+++|+
T Consensus       175 ~~~-----~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  175 AKK-----TRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhh-----hccchhHHHHHHhcceeeeeccccc
Confidence            522     2288899999999998887777654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.66  E-value=0.0075  Score=67.14  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDW-IGAAYVLTILGAFLADAY  103 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~-~~~~~~~~~~gG~laD~~  103 (540)
                      +.+...++...++..++-+..+++|-|+.+++|.+...|..+.+.. ..+..++.++||++.-|+
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            5566778899999999999999999999999999999999888665 445668899999998886

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.57  E-value=0.00056  Score=74.90  Aligned_cols=176  Identities=14%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCcchhhhhhhhc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIG-AAYVLTILGAFLADAYLGQPALKHVHAIFKL  118 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~  118 (540)
                      +.+....+...++....-++.+++|.|+.++++++.+++.++.+...+ +..++.++||++..|+ . .+          
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~-k-l~----------  372 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF-K-LS----------  372 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe-c-Cc----------
Confidence            455667788888899999999999999999999999999988877644 6678899999999987 3 11          


Q ss_pred             ccchHHHHHHHHHHHHHHHH---HHH--------hcccCCC-----C------CCCCCC-----------CCCccCCCch
Q 041588          119 QGRFRTLVVFSCIYSVGMVL---LTV--------SGSLDSL-----R------PPACKE-----------RPCVEVNGGQ  165 (540)
Q Consensus       119 ~~r~~~i~~~~~~~~~~~~~---l~~--------~~~~~~~-----~------~~~~~~-----------~~~~~~~~~~  165 (540)
                        .|+.+....+...++.++   +.+        ++.....     .      .++|+.           -.|...-..+
T Consensus       373 --~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~  450 (539)
T PF03137_consen  373 --ARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNK  450 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccc
Confidence              222232222222222221   111        1000001     0      111211           0133221123


Q ss_pred             hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhcc
Q 041588          166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA-INMGAIFGITVLVYIQEQK  235 (540)
Q Consensus       166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~-~~iG~~i~p~v~~~l~~~~  235 (540)
                      ...+++..++..+..+..........-+..++++      |..+.++.... --+|.+-||++-|.+.|..
T Consensus       451 ~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  451 LIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            3444444444444444433333333447777776      88999886554 4678888999999998864

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.54  E-value=0.019  Score=56.12  Aligned_cols=154  Identities=18%  Similarity=0.187  Sum_probs=94.2

Q ss_pred             HHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 041588           64 TAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG  143 (540)
Q Consensus        64 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~  143 (540)
                      ..|+.+.+|+...+.+.+...-.+..+++..+.|-++|+. |               ||+.-+..++.++    +..+.-
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-G---------------RKracvtycitYi----LsCiTK  119 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-G---------------RKRACVTYCITYI----LSCITK  119 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-c---------------cccceeeehHHHH----HHHHhh
Confidence            3567788999999999888888888888888999999997 9               9998766554444    333332


Q ss_pred             ccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhh-hhccCCCCChHHHHhhhhhHHH-HHHHHHHHH
Q 041588          144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSF-GADQYDEADEKEAIQKYVFFNW-FFFAINMGA  221 (540)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~-~~d~~~~~~~~~~~~r~~~~~~-~~~~~~iG~  221 (540)
                                        .++++-.+++++++-|+.++...++.-+. ++|.-++++=+... ...-|+- ..+++.+-+
T Consensus       120 ------------------hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW-ls~TFskA~ffgNglvA  180 (454)
T KOG4332|consen  120 ------------------HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW-LSVTFSKAVFFGNGLVA  180 (454)
T ss_pred             ------------------cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh-hhHHHHHHHHhhccHHH
Confidence                              12456678899999999888766655444 35554333211100 1111111 122333334


Q ss_pred             HHHHHHHHhhhhcc--CcchhhhHhHHHHHHHHHHHH
Q 041588          222 IFGITVLVYIQEQK--GWSVGFGIPTAFTICSIIIVA  256 (540)
Q Consensus       222 ~i~p~v~~~l~~~~--g~~~~f~i~~~~~~~~~i~~~  256 (540)
                      +++.+.+-.++|..  |--.+|-..+...+++..+.+
T Consensus       181 iiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  181 IIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            44444555666654  456677655555555555443

>PRK03612 spermidine synthase; Provisional

Probab=96.51  E-value=0.14  Score=56.06  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=82.4

Q ss_pred             HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHH-HHHHHHHH
Q 041588           63 MTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYS-VGMVLLTV  141 (540)
Q Consensus        63 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~-~~~~~l~~  141 (540)
                      ..-.+...+|-+..+.+++++++.++..++..++|+++++...               ++..+.++..+.. +...++..
T Consensus        37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~---------------~~~~~e~~i~l~~~~~~~ll~~  101 (521)
T PRK03612         37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAA---------------GFVAVELLLALLGGLSALILYA  101 (521)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555678888888999999999999998888888755422               2222211211111 11111111


Q ss_pred             hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHH
Q 041588          142 SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGA  221 (540)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~  221 (540)
                      .....                ......++...++.++..|+..|....+..+... ++      .+...+-.|....+|+
T Consensus       102 ~~~~~----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa  158 (521)
T PRK03612        102 AFAFQ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGA  158 (521)
T ss_pred             HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHH
Confidence            10000                0011112233334556666655655555443221 11      3445677788888899


Q ss_pred             HHHHHHHHhhh-hccCc-chhhhHhHHHHHHHHHHHHhc
Q 041588          222 IFGITVLVYIQ-EQKGW-SVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       222 ~i~p~v~~~l~-~~~g~-~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ++|.++.+++. ...|- ...+.++.+..+++++.++..
T Consensus       159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888654 35664 344443333334443333333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.16  E-value=0.2  Score=54.66  Aligned_cols=151  Identities=9%  Similarity=-0.024  Sum_probs=89.2

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCC
Q 041588           69 REMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSL  148 (540)
Q Consensus        69 ~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~  148 (540)
                      ..+|.+......+...   .........+.+-|+. |               ||.....+..+..++.+..+....    
T Consensus       346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-g---------------R~~~~~~~~~~~~~~~~~~~~~~~----  402 (521)
T KOG0255|consen  346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-G---------------RRPPLFLSLFLAGIGLLLFGWLPD----  402 (521)
T ss_pred             hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-C---------------cHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            3455444433333322   4444455568889998 9               999999999999999888887631    


Q ss_pred             CCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041588          149 RPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVL  228 (540)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~  228 (540)
                                    ..+.....+...+...+.+..........+|++|+..      |..+.+.......+|++++|.+.
T Consensus       403 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  403 --------------DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             --------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0111111122222222233333445777889999987      89999999999999999999887


Q ss_pred             HhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccc
Q 041588          229 VYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR  263 (540)
Q Consensus       229 ~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~  263 (540)
                      ..... ......+.+.+....+..++.....|+.+
T Consensus       463 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  463 LLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            55543 32233332223333333333334444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.0036  Score=65.61  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             CCccchhHHHHHHHHHhhhhhHHhHhhhhcCCCCc-----ccccc--hhHHHH---------HHHHHHhhhhHHHHHhhh
Q 041588          398 GCVPIFSAINALILVPIYEKVIVPILRKLTGQTQC-----DVKTI--LSHLWH---------SAEVFTYVGQLEFFYNEA  461 (540)
Q Consensus       398 ~~~~~~n~i~iii~~p~~~~~~~p~~~r~~~~~~l-----~~~~~--~s~~~~---------~~e~~~~~~~~~~~~~~a  461 (540)
                      +.++.+--+..+++.|+.+.+-++.-|++-.-...     .+-..  ...+||         +||...+|....++.|..
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f  150 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF  150 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence            56666677777888899887765333322110000     11111  466777         999999999999999999


Q ss_pred             ccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 041588          462 TDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVA  534 (540)
Q Consensus       462 P~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~  534 (540)
                      |+..||+..+++++.+-+|+.+|.+....+.+.+.    .|          .+.|+..|+++++..++-+++.
T Consensus       151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~----~W----------r~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF----WW----------RWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             cchhhhHHHHHhhhhcccccceeEEeeeeeccCcc----ce----------EEEEEeehHHHHHHHHHHHhhc
Confidence            99999999999999999999999888887775442    24          3678888888888765544443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.01  E-value=0.33  Score=52.23  Aligned_cols=163  Identities=10%  Similarity=0.027  Sum_probs=91.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCCh-----hHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCCcchhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSL-----PTAGTHVTDW-IGAAYVLTILGAFLADAYLGQPALKHVH  113 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~-----~~a~~~~~~~-~~~~~~~~~~gG~laD~~~G~~~~~~~~  113 (540)
                      |.+..+.+..|+-.++|+.+.+     +.|.+..+.     +....+-+.. .-...+..++-+++++|+ +        
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~--------   72 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-S--------   72 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------
Confidence            5566666777777777765543     456665532     2233333322 223334478889999998 9        


Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhcc--cCCCCCCC-CCCC-CCccC---------CCchhHHHHHHHHHHHHhc
Q 041588          114 AIFKLQGRFRTLVVFSCIYSVGMVLLTVSGS--LDSLRPPA-CKER-PCVEV---------NGGQNGFLLCALGLIALGT  180 (540)
Q Consensus       114 ~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~-~~~~~---------~~~~~~~~~~~~~l~~~g~  180 (540)
                             |++.+-+....+.+.++++++.-.  -+.++|.+ |++. .-.++         .......+++..=+.+   
T Consensus        73 -------~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---  142 (472)
T TIGR00769        73 -------KEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---  142 (472)
T ss_pred             -------HHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---
Confidence                   998888777666665555554311  11122111 1110 00000         0011112222211111   


Q ss_pred             CCCcc-chhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588          181 RDIKP-CVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ  232 (540)
Q Consensus       181 g~~~~-~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~  232 (540)
                      ...-+ ..+++..|.+..++      -.+.++++..+.|+|..+++.+..++.
T Consensus       143 ~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       143 SVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122 56788899998776      678999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.93  E-value=0.084  Score=56.07  Aligned_cols=136  Identities=15%  Similarity=0.024  Sum_probs=100.6

Q ss_pred             HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 041588           60 AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLL  139 (540)
Q Consensus        60 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l  139 (540)
                      -..+..|+... |++....|..=+...+....++.+..++.+|+ |               --|+=+++.....+...+.
T Consensus       278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-G---------------lvr~G~~~l~~q~~~L~~~  340 (432)
T PF06963_consen  278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-G---------------LVRAGLWSLWWQWVCLALC  340 (432)
T ss_pred             cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------chhhHHHHHHHHHHHHHHH
Confidence            34578898876 99999999999999999999999999999998 9               8888888887665555444


Q ss_pred             HHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHH
Q 041588          140 TVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINM  219 (540)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~i  219 (540)
                      ..+-..+...           .+..+...++.++++-=+|.=++.-+...++.|..|+++      |+...+..+...++
T Consensus       341 v~~~~~~~~~-----------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~l  403 (432)
T PF06963_consen  341 VVSFWAPGSP-----------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSL  403 (432)
T ss_pred             HHHHhcCCCC-----------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHH
Confidence            4432222100           012345556666666667766777888888888888776      99999998888888


Q ss_pred             HHHHHHHHHH
Q 041588          220 GAIFGITVLV  229 (540)
Q Consensus       220 G~~i~p~v~~  229 (540)
                      .-++...++-
T Consensus       404 f~ll~~~~~i  413 (432)
T PF06963_consen  404 FELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHh
Confidence            8777655543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.87  E-value=0.33  Score=52.64  Aligned_cols=89  Identities=11%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHH
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAI  204 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~  204 (540)
                      +.+|.++..++++.+.++.....            +....+..+++++.+++.+|.-+..|.-.+++++..|++-     
T Consensus       348 fa~g~~~~g~~f~~l~~~~~~~~------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~-----  410 (493)
T PRK15462        348 FALGLGLMSAGFCILTLSARWSA------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV-----  410 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH-----
Confidence            55677788888888876542111            0012356677788888999999999999999999999887     


Q ss_pred             hhhhhHHHHHHHH-HHHHHHHHHHHHhh
Q 041588          205 QKYVFFNWFFFAI-NMGAIFGITVLVYI  231 (540)
Q Consensus       205 ~r~~~~~~~~~~~-~iG~~i~p~v~~~l  231 (540)
                       ++..++.++... .+|..++..+.+..
T Consensus       411 -~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        411 -TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             889999987643 57766666655544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.82  E-value=0.23  Score=52.19  Aligned_cols=156  Identities=13%  Similarity=0.030  Sum_probs=93.8

Q ss_pred             HHHHHHHhhHh-cCCChhHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHH
Q 041588           60 AVNMTAYLVRE-MHQSLPTAG-THVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV  137 (540)
Q Consensus        60 ~~~l~~yl~~~-lg~s~~~a~-~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~  137 (540)
                      -+++..|++++ .|++..+.. -+.-+++-.+....++.+.++|.. |               .|++++.+++...+...
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~---------------Ykpviil~~~~~i~t~~   86 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-R---------------YKPVIILQALSYIITWL   86 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-h---------------hhHHHHHHHHHHHHHHH
Confidence            46788999987 899988875 344455566667788889999987 8               88888888877777777


Q ss_pred             HHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHH
Q 041588          138 LLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAI  217 (540)
Q Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~  217 (540)
                      ++...                     .+...+-+.-++.|++.+.    -.++.+-.|..-+++. =||.  .++-..+.
T Consensus        87 lll~~---------------------~sv~~mq~~q~~yg~~~a~----evay~sYiys~v~~~~-yq~v--ts~~raa~  138 (412)
T PF01770_consen   87 LLLFG---------------------TSVLAMQLMQFFYGLATAA----EVAYYSYIYSVVDKEH-YQKV--TSYTRAAT  138 (412)
T ss_pred             HHHHH---------------------CcHHHHHHHHHHHHHHHHH----HHHHHHHheeecCHHH-HHHH--HHHHHHHH
Confidence            76665                     2355555666666666543    3333333343332221 1233  33333344


Q ss_pred             HHHHHHHHHHHHhhhh--ccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          218 NMGAIFGITVLVYIQE--QKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       218 ~iG~~i~p~v~~~l~~--~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                      -+|-.++..++=.+..  ..++....++......+++++.++..
T Consensus       139 l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  139 LVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4444444433333332  34567777777777777766655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.79  E-value=0.13  Score=44.15  Aligned_cols=74  Identities=16%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588          444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN  523 (540)
Q Consensus       444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~  523 (540)
                      ++.....+.......+..|++.|+..+++......+|..+++.+.+.+....     +          ..+.|++.+.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~  127 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----G----------WRAPFLFLAILA  127 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-----c----------hHHHHHHHHHHH
Confidence            5555666778888999999999999999999999999999999887765211     2          335677766666


Q ss_pred             HHHHHHHHH
Q 041588          524 GLNFFVYFW  532 (540)
Q Consensus       524 ~~~~~~y~~  532 (540)
                      ++..+....
T Consensus       128 ~~~~~~~~~  136 (141)
T TIGR00880       128 LAAFILLAF  136 (141)
T ss_pred             HHHHHHHhh
Confidence            666554443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.77  E-value=3.2  Score=43.67  Aligned_cols=50  Identities=20%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHh
Q 041588          444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIER  493 (540)
Q Consensus       444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~  493 (540)
                      +....+++.....+.++.|++.|..++|.-...-++|..+++.+.-.+++
T Consensus       347 LlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  347 LLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55556677777778889999999999999999999999998888776654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.68  E-value=0.024  Score=60.64  Aligned_cols=200  Identities=11%  Similarity=0.017  Sum_probs=116.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHH-H-HHHHHHHhhhhcCCCcchhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYV-L-TILGAFLADAYLGQPALKHVHA  114 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~-~-~~~gG~laD~~~G~~~~~~~~~  114 (540)
                      -.|+..+.+++..+...+.+..+-+..+.+....++++.+++....++......+ . .+...+..-|. |    +..  
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~----~i~--  331 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-G----KID--  331 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-h----hhc--
Confidence            3456777777888888888887777777777777888888775555544332222 2 33334444443 4    001  


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhc-c--cCCCC-C---CCCCC--CC-CccCCCchhHHHHHHH-HHHHHhcCCC
Q 041588          115 IFKLQGRFRTLVVFSCIYSVGMVLLTVSG-S--LDSLR-P---PACKE--RP-CVEVNGGQNGFLLCAL-GLIALGTRDI  183 (540)
Q Consensus       115 ~~~~~~r~~~i~~~~~~~~~~~~~l~~~~-~--~~~~~-~---~~~~~--~~-~~~~~~~~~~~~~~~~-~l~~~g~g~~  183 (540)
                            +|+.+..+.++....+.+....- .  .|... +   ..|+-  .+ |......+...++++. ++.|++.-.+
T Consensus       332 ------~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~  405 (488)
T KOG2325|consen  332 ------KRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFI  405 (488)
T ss_pred             ------cceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccc
Confidence                  34444444333323222222111 0  11111 1   11221  22 6666556666665553 3455655556


Q ss_pred             ccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHH
Q 041588          184 KPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIV  255 (540)
Q Consensus       184 ~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~  255 (540)
                      .....++.+++..+.+      .+..-+++.....++-.++|++...+....|.++...+..+..++....+
T Consensus       406 ~~~~~tlySkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  406 STALDTLYSKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             cchHHHHHHHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            6677888889988776      66677777788889999999999888888888877766555544444333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.44  E-value=0.17  Score=40.80  Aligned_cols=72  Identities=15%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHH
Q 041588           51 AERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSC  130 (540)
Q Consensus        51 ~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~  130 (540)
                      +.|++|   ++.+| .+.++.++|.++++.+.+.-.+++.++.+...++.++. +               +++.+..+.+
T Consensus         6 igRFay---TplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~---------------~~~~~~~~l~   65 (85)
T PF06779_consen    6 IGRFAY---TPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-R---------------PRRLLRAGLL   65 (85)
T ss_pred             hHHHHH---HhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------------HHHHHHHHHH
Confidence            345555   34444 46788999999999999999999999999999999986 7               8888888988


Q ss_pred             HHHHHHHHHHHh
Q 041588          131 IYSVGMVLLTVS  142 (540)
Q Consensus       131 ~~~~~~~~l~~~  142 (540)
                      +..+.++.+++.
T Consensus        66 ~~~~~~~~ma~~   77 (85)
T PF06779_consen   66 LTVLSTAAMALT   77 (85)
T ss_pred             HHHHHHHHHHHH
Confidence            888888888876

Note that many members are hypothetical proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.67  E-value=3.3  Score=40.88  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHh
Q 041588          165 QNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP  244 (540)
Q Consensus       165 ~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~  244 (540)
                      +...-+++..++-.+.|.++|.+.-+-.+..|++.      |.+.++|+-.-.|+-.-++-...-.=....+-+..|.+|
T Consensus       343 s~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ic  416 (454)
T KOG4332|consen  343 SPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGIC  416 (454)
T ss_pred             CchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhh
Confidence            44445677778888888999999988888888876      999999998888876544321100001123456789888


Q ss_pred             HHHHHHHHHHH
Q 041588          245 TAFTICSIIIV  255 (540)
Q Consensus       245 ~~~~~~~~i~~  255 (540)
                      .+.+.++.+..
T Consensus       417 S~~~~~a~i~~  427 (454)
T KOG4332|consen  417 SAFLFVASILQ  427 (454)
T ss_pred             HHHHHHHHHHH
Confidence            88877775543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=89.63  E-value=5  Score=43.02  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHh
Q 041588          126 VVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQ  205 (540)
Q Consensus       126 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~  205 (540)
                      -.+..++..+++++........           .+.+..+.++++.+.+++++|.=+..|.-.++.+...|+.-      
T Consensus       365 alGl~l~g~~fl~l~~~~~~~~-----------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------  427 (498)
T COG3104         365 ALGLILAGLGFLILLLAGIWFG-----------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------  427 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-----------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------
Confidence            3455566666666665521110           01123467888899999999999999999999999988865      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHh------hhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          206 KYVFFNWFFFAINMGAIFGITVLVY------IQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       206 r~~~~~~~~~~~~iG~~i~p~v~~~------l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      .+..++.+.+....|..++..+++.      ..+.......|+.++...++..++...
T Consensus       428 ~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         428 KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6778888888888888777666652      223334555666665555444444333

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.36  E-value=10  Score=40.97  Aligned_cols=72  Identities=15%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhHHHHHhhhccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHH
Q 041588          444 SAEVFTYVGQLEFFYNEATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGIN  523 (540)
Q Consensus       444 ~~e~~~~~~~~~~~~~~aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~  523 (540)
                      ++|.... +....+++-.|++.|++++|++.....+|..+++.+.+.+..      -+|-      ...+-.|+.++..+
T Consensus       127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s------~gWr------~y~~Ln~Isl~s~~  193 (511)
T TIGR00806       127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT------LGWI------SYSTLNIISLVFMT  193 (511)
T ss_pred             HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCch------hHHHHHHHHHHHHH
Confidence            8888888 999999999999999999999999999999999999998431      2562      22333466666665


Q ss_pred             HHHHH
Q 041588          524 GLNFF  528 (540)
Q Consensus       524 ~~~~~  528 (540)
                      +..++
T Consensus       194 ~a~~~  198 (511)
T TIGR00806       194 FSVFL  198 (511)
T ss_pred             HHHHH
Confidence            55443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.67  E-value=11  Score=40.58  Aligned_cols=92  Identities=17%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCCh
Q 041588          121 RFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADE  200 (540)
Q Consensus       121 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~  200 (540)
                      |++++.++.++..++.++.-+....++-.+|+-+.   ....+++.....+.-.+.|++-++.......++++.+|++  
T Consensus       311 ~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~---~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~--  385 (461)
T KOG3098|consen  311 RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP---PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD--  385 (461)
T ss_pred             cCcchhHHHHHHHHHHHHHhccccccCCCCCCccc---ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--
Confidence            99999999998888877776653211100010000   0011223334444556788999999999999999999554  


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHH
Q 041588          201 KEAIQKYVFFNWFFFAINMGAI  222 (540)
Q Consensus       201 ~~~~~r~~~~~~~~~~~~iG~~  222 (540)
                           |..+++++-+--.++..
T Consensus       386 -----~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  386 -----RAQAFSLFKFYQSVASC  402 (461)
T ss_pred             -----hHHHHHHHHHHHHHHHH
Confidence                 55666665444444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=86.42  E-value=4.8  Score=42.36  Aligned_cols=62  Identities=5%  Similarity=-0.115  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041588          165 QNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ  232 (540)
Q Consensus       165 ~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~  232 (540)
                      +.+..++.++..|+..|....+....+.|..++++      |.-.++.-.++-++|..++..++-.+.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35666666777888888888888888888776655      778888888888888888777765554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.98  E-value=3.8  Score=43.81  Aligned_cols=56  Identities=11%  Similarity=0.196  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041588          166 NGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITV  227 (540)
Q Consensus       166 ~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v  227 (540)
                      -+..++..++.|+..|-..+.......+..++++      |..+-++..++.++|-.+|..+
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788899988877777777777766543      5555556666666666655544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.33  E-value=78  Score=34.23  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=48.5

Q ss_pred             HhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHH
Q 041588          178 LGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTIC  250 (540)
Q Consensus       178 ~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~  250 (540)
                      +..-.....--..+.+++|+++     +|..+++-+....++..++...+++.+.+..||..+..+.-+++++
T Consensus       278 ~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       278 ISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3333444555566778887654     2888999998888888877777779999999999877764444444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=80.84  E-value=30  Score=35.42  Aligned_cols=114  Identities=12%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhh
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAI  115 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~  115 (540)
                      +..-|.++.+-...+....+|-+. .+|......++|...-  +.+    ......+.++.+.+-.+ +|          
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~~sl--~~~----y~~l~~s~m~~~~~Ir~-~g----------   86 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGTVSL--GAL----YLSLIDSSMFMPLLIRF-LG----------   86 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcccchh--hhh----hHHHHHHHHHHHHHHHH-Hh----------
Confidence            334466666655555555555544 5666665544443222  111    11223334444445554 59          


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhcc
Q 041588          116 FKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQ  194 (540)
Q Consensus       116 ~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~  194 (540)
                           -|.+++++...+...    ......|                  .+..+..+-...|.|.+..++...++.+++
T Consensus        87 -----~K~tm~lav~~Y~ly----iA~Nl~p------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~  138 (390)
T KOG3097|consen   87 -----TKWTMVLAVFPYALY----IAANLEP------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPM  138 (390)
T ss_pred             -----hHHHHHHHHHHHHHH----HHhhcch------------------hHHhhccHHHhhccccccccccCcceecHH
Confidence                 999998887544432    1111111                  233445556678888888887777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	540
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-15

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 44/253 (17%)
Query: 43  PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP------TAGTHVTDWIGAAYVLTILG 96
           P+II +E  ER +F+ +   +T +L+  +  S+P       A      ++   Y   +LG
Sbjct: 15  PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLG 74
Query: 97  AFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKER 156
            ++AD + G               ++ T++  S IY VG   L +               
Sbjct: 75  GWIADRFFG---------------KYNTILWLSLIYCVGHAFLAIFEH------------ 107
Query: 157 PCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFA 216
               V G   G     L LIALG+  IKP VSSF  DQ+D++++  A QK   F+ F+F 
Sbjct: 108 ---SVQGFYTG-----LFLIALGSGGIKPLVSSFMGDQFDQSNKSLA-QKA--FDMFYFT 156
Query: 217 INMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSSLTRFV 276
           IN G+ F    +  + +  G +V FGIP      + +    G   Y +  P       F+
Sbjct: 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216
Query: 277 QVIVSYVRNHLEG 289
            VI S +   +EG
Sbjct: 217 PVIRSALLTKVEG 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
2xut_A	524	Proton/peptide symporter family protein; transport	1e-116
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  352 bits (904), Expect = e-116
 Identities = 103/554 (18%), Positives = 195/554 (35%), Gaps = 93/554 (16%)

Query: 30  TADKRTTGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLP------TAGTHVT 83
            +        +  P+II +E  ER +F+ +   +T +L+  +  S+P       A     
Sbjct: 2   NSPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFH 61

Query: 84  DWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSG 143
            ++   Y   +LG ++AD + G               ++ T++  S IY VG   L +  
Sbjct: 62  SFVIGVYFFPLLGGWIADRFFG---------------KYNTILWLSLIYCVGHAFLAIFE 106

Query: 144 SLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEA 203
                                        L LIALG+  IKP VSSF  DQ+D++++   
Sbjct: 107 --------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSL- 145

Query: 204 IQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYR 263
                 F+ F+F IN G+ F    +  + +  G +V FGIP      + +    G   Y 
Sbjct: 146 --AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYI 203

Query: 264 YQKPIGSSLTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFL 323
           +  P       F+ VI S +   +EG        +  +    S  +    +        L
Sbjct: 204 HMPPEPKDPHGFLPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGL 261

Query: 324 DKAAVITDP------ETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTF 377
             A V+             +   +      V+ ++S +RIL ++A        F Q ++ 
Sbjct: 262 CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKAST 321

Query: 378 FLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIYEKVIVPILRKLTGQ-------- 429
           ++ QA  M +            +   + +  ++L+P    V+ P + ++  +        
Sbjct: 322 WILQANDMVK----PQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMG 377

Query: 430 -----------------TQCDVKTILSHLWH--------SAEVFTYVGQLEFFYNEATDG 464
                               D  + LS  W           EV      LEF Y++A   
Sbjct: 378 AGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437

Query: 465 TRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGING 524
            +    + +   + +G+         ++  T    E  ++  ++++    F++  AG   
Sbjct: 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT--EQIVQTGMSVTAFQMFFF--AGFAI 493

Query: 525 LNFFVYFWVAWRYK 538
           L   V+   A  Y+
Sbjct: 494 LAAIVFALYARSYQ 507

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 45/228 (19%)

Query: 40  KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQ-----SLPTAGTHVTDWIGAAYVLTI 94
                + + E+ ER +++ +   +  Y+   +       +  TA + +  +    Y+   
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 95  LGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACK 154
           +G F+AD  +G                   +     +  +G ++L +             
Sbjct: 73  IGGFVADRIIGA---------------RPAVFWGGVLIMLGHIVLALPFGA--------- 108

Query: 155 ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFF 214
                         L  ++ LI +GT  +KP VS+     YDE D +    +   F+ F 
Sbjct: 109 ------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFV 152

Query: 215 FAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY 262
           F IN+GA     ++   QE  G+ V F +        +++   G    
Sbjct: 153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 63/473 (13%), Positives = 136/473 (28%), Gaps = 137/473 (28%)

Query: 98  FLADAY---LGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMV--LLTVSGSLDSLRPPA 152
           FL         QP++     I +    +    VF+  Y+V  +   L +  +L  LRP  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRP-- 149

Query: 153 CKERPCVEVNGGQNGFLLCALG---LIALGTRDIKP-CVSSFGADQYDEADEKEAIQKYV 208
                 V ++G   G      G   +        K  C   F                 +
Sbjct: 150 ---AKNVLIDG-VLGS-----GKTWVALDVCLSYKVQCKMDFK----------------I 184

Query: 209 FFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPI 268
           F  W    +N+        ++ + +               +   I      P +  +   
Sbjct: 185 F--W----LNLKNCNSPETVLEMLQ--------------KLLYQID-----PNWTSRSDH 219

Query: 269 GSSLTRFVQVIVSYVRNHLEGVEVEHE------DDLYE--------------VTTKESDI 308
            S++   +  I + +R  L+     +E       ++                +TT+   +
Sbjct: 220 SSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 309 FGARKLSHSSQFRFLDKAAVITDPETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLA 368
                 + ++       +  +T  E               + L   ++ L       DL 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV--------------KSL--LLKYLDC--RPQDLP 319

Query: 369 ISFAQLSTFFLSQAAVMDRNLGS--NFTIPTGCVPIFSAINALI--LVP-----IYEKVI 419
                 +   LS  A   R+  +  +      C  + + I + +  L P     +++++ 
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 420 VPILRKLTGQTQCDVK---TILSHLWHSAEVFTYVGQLEFFYN------EATDGTRSIST 470
             +                 +LS +W        +  +   +       +  + T SI  
Sbjct: 380 --VFPP-------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP- 429

Query: 471 AIFLSEIGLGSCLSNALV--KIIERATGGQEEGWLRNDLNMSKLD-YFYWILA 520
           +I+L         +   +   I++       + +  +DL    LD YFY  + 
Sbjct: 430 SIYLEL--KVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.75
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.64
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.15
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.13
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.78
2xut_A	524	Proton/peptide symporter family protein; transport	97.92

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=3.2e-28  Score=262.81  Aligned_cols=442  Identities=22%  Similarity=0.360  Sum_probs=280.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMH------QSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKH  111 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg------~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~  111 (540)
                      ++|.++.+.+..++.++++|++.++++.|+.+++|      ++..+++.+.+.+.+...++.+++|+++||++|      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------   83 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------   83 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            34667888899999999999999999999999999      999999999999999999999999999999669      


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhh
Q 041588          112 VHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFG  191 (540)
Q Consensus       112 ~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~  191 (540)
                               ||+++.++.++..++.+++.++.                    .+.+.+++++++.|++.+...++..+++
T Consensus        84 ---------~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~  134 (524)
T 2xut_A           84 ---------KYNTILWLSLIYCVGHAFLAIFE--------------------HSVQGFYTGLFLIALGSGGIKPLVSSFM  134 (524)
T ss_dssp             ---------SHHHHHHHHHHHHHHHHHHHHTS--------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ---------chHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhccccchhHHHHH
Confidence                     99999999999999988888762                    1467788899999999999999999999


Q ss_pred             hccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccccccCCCCCh
Q 041588          192 ADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQKPIGSS  271 (540)
Q Consensus       192 ~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~  271 (540)
                      +|++|+++.+   ++...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.++++...++.+..+|++++
T Consensus       135 ~~~~~~~~r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (524)
T 2xut_A          135 GDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKD  211 (524)
T ss_dssp             HHTCSTTTTT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----
T ss_pred             HHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Confidence            9999987611   1244567799999999999999999999989999999988887777766665555554444444333


Q ss_pred             HHHHHHHHHHHHHhhccCccccCccchhhhccccccccccccccCCCch---------hhhhhhhhccCccccccccc--
Q 041588          272 LTRFVQVIVSYVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQF---------RFLDKAAVITDPETVRKDRW--  340 (540)
Q Consensus       272 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ld~a~~~~~~~~~~~~~~--  340 (540)
                      ..+..+.+..+.|++....+  +.....+.........   ...+.+..         .+....+.       .+++|  
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  279 (524)
T 2xut_A          212 PHGFLPVIRSALLTKVEGKG--NIGLVLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGFV-------GAGASLQ  279 (524)
T ss_dssp             ---------------CTTHH--HHHHHHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHHH-------HTGGGTH
T ss_pred             chhHHHHHHHHHhhhhcccC--ccchhhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhccc-------ccchhhH
Confidence            22333333333332211000  0000000000000000   00000000         00000000       00111  


Q ss_pred             -----ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhccCCCCCceecCCCccchhHHHHHHHHHhh
Q 041588          341 -----RLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAVMDRNLGSNFTIPTGCVPIFSAINALILVPIY  415 (540)
Q Consensus       341 -----~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~~~~~~~~g~~i~~~~~~~~n~i~iii~~p~~  415 (540)
                           +.++..+.++.|+.+..+++++....++..+.|..+.+..+...++..   .+ ++.+.+..++.+..++..|+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~  355 (524)
T 2xut_A          280 LERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFN  355 (524)
T ss_dssp             HHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGT
T ss_pred             HhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHH
Confidence                 011122234456666677788888888888888888777776555432   11 355667788888899999999


Q ss_pred             hhhHHhHhhhhcCCCC----c-----------------ccc---cc-hhHHHH--------HHHHHHhhhhHHHHHhhhc
Q 041588          416 EKVIVPILRKLTGQTQ----C-----------------DVK---TI-LSHLWH--------SAEVFTYVGQLEFFYNEAT  462 (540)
Q Consensus       416 ~~~~~p~~~r~~~~~~----l-----------------~~~---~~-~s~~~~--------~~e~~~~~~~~~~~~~~aP  462 (540)
                      +++..|..+|+..+..    +                 +..   +. .+.+|.        +++.+..+..++...+.+|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  435 (524)
T 2xut_A          356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP  435 (524)
T ss_dssp             TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9987776666532211    0                 000   00 111222        8888899999999999999


Q ss_pred             cccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041588          463 DGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRN-DLNMSKLDYFYWILAGINGLNFFVYFWVAWRYK  538 (540)
Q Consensus       463 ~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~-~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~~  538 (540)
                      ++.||.++|+++....+|+.+++.+.+.+...+   ..+|.++ +++.+  .+.|++.+++++++.++++++.++++
T Consensus       436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH---HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988765321   1135432 12211  23378888888888877777666654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=6.7e-26  Score=242.38  Aligned_cols=412  Identities=17%  Similarity=0.196  Sum_probs=278.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCcc
Q 041588           36 TGGWKASPFIIVNEVAERLAFFAIAVNMTAYLVRE-----MHQSLPTAGTHVTDWIGAAYVLTILGAFLADA-YLGQPAL  109 (540)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~-~~G~~~~  109 (540)
                      ++++|.++.+.+..+++++++|++.++++.|+.++     +|++..+.+.+.+.+.++..++.+++|+++|| + |    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g----   83 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G----   83 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C----
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c----
Confidence            34567889999999999999999999999999998     99999999999999999999999999999999 7 9    


Q ss_pred             hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhh
Q 041588          110 KHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSS  189 (540)
Q Consensus       110 ~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~  189 (540)
                                 ||+++.++.++..++.++++++                     .+...+++++++.|+|.+...++..+
T Consensus        84 -----------~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~  131 (491)
T 4aps_A           84 -----------ARPAVFWGGVLIMLGHIVLALP---------------------FGASALFGSIILIIIGTGFLKPNVST  131 (491)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHSC---------------------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------chHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHhccchHHH
Confidence                       9999999999999998888765                     24667888999999999999999999


Q ss_pred             hhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCcccccc---C
Q 041588          190 FGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYYRYQ---K  266 (540)
Q Consensus       190 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~~---~  266 (540)
                      +++|++|+++.+    |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+++...   +
T Consensus       132 ~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (491)
T 4aps_A          132 LVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR  207 (491)
T ss_dssp             HHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred             HHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence            999999987633    778899999999999999999999999999999999998777777766665544433221   1


Q ss_pred             CCC-ChHHHHHHHHHH--------------HHHhhccCccccCccchhhhccccccccccccccCCCchhhhhhhhhccC
Q 041588          267 PIG-SSLTRFVQVIVS--------------YVRNHLEGVEVEHEDDLYEVTTKESDIFGARKLSHSSQFRFLDKAAVITD  331 (540)
Q Consensus       267 ~~~-~~l~~~~~v~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~  331 (540)
                      |+. ....+..+....              ......  .   +.+....             ..     ...........
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~--~---~~~~~~~-------------~~-----~~~~~~~~~~~  264 (491)
T 4aps_A          208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW--N---SLPAYIN-------------LL-----TIVAIAIPVFY  264 (491)
T ss_dssp             CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS--C---CTTHHHH-------------HH-----HHHHHHHHHHH
T ss_pred             CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC--c---ccccchh-------------hh-----hHHHHHHHHHH
Confidence            111 111111110000              000000  0   0000000             00     00000000000


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh-hccCCCCCceecCCCccchhHHHHHH
Q 041588          332 PETVRKDRWRLCTLTQVEELKSFIRILPIWASTLDLAISFAQLSTFFLSQAAV-MDRNLGSNFTIPTGCVPIFSAINALI  410 (540)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~s~~~~q~~~-~~~~~~~g~~i~~~~~~~~n~i~iii  410 (540)
                          ....|+.. .....++++..+.+++++....++..+.+..+.+..+..+ .+..     ..+.+.+..++.+..++
T Consensus       265 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  334 (491)
T 4aps_A          265 ----FAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIML  334 (491)
T ss_dssp             ----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHH
T ss_pred             ----HHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHH
Confidence                00001100 0112344555567788888888899998888876655432 2211     15567888899999999


Q ss_pred             HHHhhhhhHHhHhhhhcCCCC-c--------------cc-----c-cc-hhHHHH--------HHHHHHhhhhHHHHHhh
Q 041588          411 LVPIYEKVIVPILRKLTGQTQ-C--------------DV-----K-TI-LSHLWH--------SAEVFTYVGQLEFFYNE  460 (540)
Q Consensus       411 ~~p~~~~~~~p~~~r~~~~~~-l--------------~~-----~-~~-~s~~~~--------~~e~~~~~~~~~~~~~~  460 (540)
                      ..++.+++.+++.||...... +              ..     . .. .+.+|.        +++.+..+..+++..+.
T Consensus       335 ~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          335 YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             HHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            999999987766555322211 0              00     0 00 011222        77778888999999999


Q ss_pred             hccccchhhHhHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccCcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041588          461 ATDGTRSISTAIFLSEIGLGSCLSNALVKIIERATGGQEEGWLRNDLNMSKLDYFYWILAGINGLNFFVYFWVAWRY  537 (540)
Q Consensus       461 aP~~~r~~~~~~~~~~~~ig~~l~~~l~~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~la~l~~~~~~~y~~~~~~~  537 (540)
                      +|++.||.++|++.....+|+.+++.+.+.+..                .+....|+++++++++..++.+.+.++.
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----------------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888655431                1234677888888877776665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.87  E-value=2.9e-20  Score=195.69  Aligned_cols=178  Identities=12%  Similarity=0.008  Sum_probs=150.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +++.++.+.+..+......+.+...++.+. +++ .+..+.+.+.+.+.++..++.+++|+++||+ |            
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g------------   90 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N------------   90 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-C------------
Confidence            345566666677777777666677776655 456 9999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhc
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTV----SGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGAD  193 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d  193 (540)
                         ||++++++.++..++.+++++    +                     .+.+.+++++++.|++.+...++..++++|
T Consensus        91 ---~r~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  146 (451)
T 1pw4_A           91 ---PRVFLPAGLILAAAVMLFMGFVPWAT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVH  146 (451)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHCHHHH---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             ---chHHHHHHHHHHHHHHHHHHhhhhcc---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence               999999999999999999887    5                     245678889999999999999999999999


Q ss_pred             cCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHHHHhcCc
Q 041588          194 QYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       194 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      .+|+++      |+..+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...+
T Consensus       147 ~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          147 WWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             TCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999876      9999999999999999999999999888888 999999888776665555444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.85  E-value=4.1e-19  Score=186.33  Aligned_cols=179  Identities=12%  Similarity=0.064  Sum_probs=146.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           37 GGWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        37 ~~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      .+++.+..+.+..+...+.++...+.+|. +.+++|.+..+.+++.+.+.++..++.+++|+++||+ |           
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g-----------   89 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S-----------   89 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-C-----------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c-----------
Confidence            34455556666666666666666666555 6778999999999999999999999999999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          ||++++++.++..++.++.......                  .+.+.+++++++.|++.+...+...++++|.+|
T Consensus        90 ----~r~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  147 (438)
T 3o7q_A           90 ----YKAGIITGLFLYALGAALFWPAAEI------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP  147 (438)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccc------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence                9999999999999999888332111                  357888999999999999999999999999999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-hccC-------------------------cchhhhHhHHHHHH
Q 041588          197 EADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQ-EQKG-------------------------WSVGFGIPTAFTIC  250 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~-~~~g-------------------------~~~~f~i~~~~~~~  250 (540)
                      +++      |+..+++++.+.++|..++|.+++++. +..+                         |++.|++.++..++
T Consensus       148 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  221 (438)
T 3o7q_A          148 ESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL  221 (438)
T ss_dssp             STT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            887      899999999999999999999999988 5554                         89999776665554


Q ss_pred             HHHHHH
Q 041588          251 SIIIVA  256 (540)
Q Consensus       251 ~~i~~~  256 (540)
                      ..++++
T Consensus       222 ~~~~~~  227 (438)
T 3o7q_A          222 VALLIM  227 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.75  E-value=6.8e-18  Score=173.69  Aligned_cols=167  Identities=10%  Similarity=0.105  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccch
Q 041588           43 PFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRF  122 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~  122 (540)
                      +.+.+..++.........+.++.+ .+++|.+..+.+.+.+.+.....++.+++|+++||+ |               ||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g---------------~r   65 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-G---------------RR   65 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-C---------------CC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------Cc
Confidence            445566677777777777777765 567999999999999999999999999999999998 9               99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      ++++++.++..++.+++..+                     .+...+++++++.|++.+...+...++..|.+|+++   
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  121 (375)
T 2gfp_A           66 PVILVGMSIFMLATLVAVTT---------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---  121 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred             hhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---
Confidence            99999999999999888876                     357788889999999999999999999999998877   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHH
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSII  253 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i  253 (540)
                         |+..+++++.+.++|..++|.+++++.+..||+..|++.++..++..+
T Consensus       122 ---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          122 ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999999888999999877666555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.66  E-value=2.1e-16  Score=165.79  Aligned_cols=172  Identities=9%  Similarity=-0.118  Sum_probs=116.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++.+....++...++..+.++++.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |              
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-G--------------   71 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G--------------   71 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-T--------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence            5667777777777778888889999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++++..++.++...+......+.                 ....++.++.+.+++.|...+...+...+..++..
T Consensus        72 -rr~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  133 (417)
T 2cfq_A           72 -LRKYLLWIITGMLVMFAPFFIFIFGPL-----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             -TCCHHHHHHHHTTSCHHHHHHHTHHHH-----------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence             999999988776543221111100000                 00001223333333333333333333333332211


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHH
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTI  249 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~  249 (540)
                          ++++..++..+...++|..++|.+++++.+ .+|+..|++.++..+
T Consensus       134 ----~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          134 ----RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL  178 (417)
T ss_dssp             ----HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred             ----hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence                125666777777889999999999999887 589999987665533

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.64  E-value=8.9e-15  Score=155.79  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 041588           75 LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACK  154 (540)
Q Consensus        75 ~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  154 (540)
                      ....+++.+.+.++..++++++|+++||+ |               ||++++++.+++.++.++.+.+........+...
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-G---------------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~  117 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT  117 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-C---------------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH
Confidence            34567888889999999999999999998 9               9999999999999999988854211000000000


Q ss_pred             CCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041588          155 ERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ  234 (540)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~  234 (540)
                      .   ...-..+...++++|++.|+|.|+..+..+.+++|..|++.      |+...++++.+..+|.++++.++..+...
T Consensus       118 ~---~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          118 V---PVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             C---CGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             H---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            0   00012467889999999999999999999999999999987      89999999999999999888887666543


Q ss_pred             c--------CcchhhhHhHHHHHHH
Q 041588          235 K--------GWSVGFGIPTAFTICS  251 (540)
Q Consensus       235 ~--------g~~~~f~i~~~~~~~~  251 (540)
                      .        +|+..+.+..+..++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          189 GDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             SCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             cccccccchhhHHHhhhhhhhhhhh
Confidence            2        3555555444443333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=3.9e-13  Score=141.02  Aligned_cols=180  Identities=14%  Similarity=0.108  Sum_probs=149.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcchhhhhhhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYL-GQPALKHVHAIFK  117 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~-G~~~~~~~~~~~~  117 (540)
                      .+.++.+++..++....++++..++|.|+.+.+|++..+++.+.....++..++.+++|+++||+. |            
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------------  318 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG------------  318 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence            467788888889999999999999999999889999999999999999999999999999999942 7            


Q ss_pred             cccchHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          118 LQGRFRTLVVFSCIYS-VGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                         ||+.+.++..+.. ++.+++....                   ..+...+.+..++.|++.+...+...++..|.+|
T Consensus       319 ---~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (451)
T 1pw4_A          319 ---NRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP  376 (451)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence               8888887776655 5555443321                   1235566677778888888888888899999999


Q ss_pred             CCChHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhc
Q 041588          197 EADEKEAIQKYVFFNWFFFAINM-GAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAG  258 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~~~~~~~i-G~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~  258 (540)
                      ++.      |++++++++...++ |+.++|.+.|++.+..||...|++.+++.+++.++.+..
T Consensus       377 ~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          377 KKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             TTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            876      99999999999999 999999999999999999999998888777776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.41  E-value=5.3e-12  Score=131.92  Aligned_cols=170  Identities=14%  Similarity=0.104  Sum_probs=137.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           39 WKASPFIIVNEVAERLAFFAIAVNMTAY-LVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        39 ~~~~~~i~~~~~~~~~~~y~~~~~l~~y-l~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      .+.++..++..++....++++..+++.| +++.+|++..+++.......++..++.+++|+++||+ |            
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~------------  323 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A------------  323 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence            3567777788888888899999999999 8888899999999999999999999999999999998 9            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         ||+++.++.++..++.+++....                     +.. ..+...+.+++.+...|...++..|.+|+
T Consensus       324 ---~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  378 (438)
T 3o7q_A          324 ---PHKVLAAYALIAMALCLISAFAG---------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ  378 (438)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHCC---------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred             ---chHHHHHHHHHHHHHHHHHHHcC---------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence               99999999988888877766551                     222 34445778888888889999998898885


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccC-cchhhhHhHHHHHHHHHH
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKG-WSVGFGIPTAFTICSIII  254 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g-~~~~f~i~~~~~~~~~i~  254 (540)
                      +       ++.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus       379 ~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          379 D-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             G-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             c-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            4       344444444 456999999999999999999 999998766555444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=8.4e-12  Score=130.57  Aligned_cols=178  Identities=10%  Similarity=0.052  Sum_probs=128.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhh
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQS---LPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIF  116 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~  116 (540)
                      +.++...+..+.....++....++|.|+.+.++..   ....+....+..+...++.+++|+++||+ |           
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g-----------  287 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G-----------  287 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-----------
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------
Confidence            44555555445555566666677899987766532   33445666666667778899999999998 9           


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCC
Q 041588          117 KLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYD  196 (540)
Q Consensus       117 ~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~  196 (540)
                          ||+++.++..+..++.+++...                     .+...+++...+.+++.+...+...++.+|.+|
T Consensus       288 ----~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p  342 (417)
T 2cfq_A          288 ----GKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFE  342 (417)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence                9999998887777776555432                     123445555555666655555666788999999


Q ss_pred             CCChHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          197 EADEKEAIQKYVFFNW-FFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       197 ~~~~~~~~~r~~~~~~-~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++.      |++++++ ++.+..+|+.++|.++|++.+..|+...|.+.+++.+++.++.+...+
T Consensus       343 ~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          343 VRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            876      8888888 577888999999999999999888888898877777777666554444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.15  E-value=7.3e-11  Score=125.47  Aligned_cols=187  Identities=12%  Similarity=0.042  Sum_probs=137.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccc
Q 041588           41 ASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQG  120 (540)
Q Consensus        41 ~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~  120 (540)
                      ..+.+.+..++....++....+++.|+.+.++.+..+++...........++.++.|+++||+ |               
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~---------------  347 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-K---------------  347 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-T---------------
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-h---------------
Confidence            345555556666666676778889999988888867777777888888888899999999998 8               


Q ss_pred             chHHHH-----HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccC
Q 041588          121 RFRTLV-----VFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQY  195 (540)
Q Consensus       121 r~~~i~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~  195 (540)
                      ||+...     ++.++..++++++........            +....+...+.++.++.+++.+...+...++..|.+
T Consensus       348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  415 (491)
T 4aps_A          348 KNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA  415 (491)
T ss_dssp             TC---CHHHHHHHHHHHHHHHTTTHHHHHHCC------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            775544     666667777666655421100            001124556677788889999998899999999999


Q ss_pred             CCCChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcCccc
Q 041588          196 DEADEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGFPYY  262 (540)
Q Consensus       196 ~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~~~  262 (540)
                      |++.      |+++.++++...++|+.++|.+.+++.+. ++...|.+.+++.+++.++++...++.
T Consensus       416 p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          416 PKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988      99999999999999999999999988764 677788777777776666666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.13  E-value=6.6e-10  Score=117.92  Aligned_cols=180  Identities=10%  Similarity=0.009  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHH
Q 041588           45 IIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRT  124 (540)
Q Consensus        45 i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~  124 (540)
                      +....+.....++.+..+. .++.+..+.+................++.++++++.||+ |               ||+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-G---------------rr~~  344 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYA-PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G---------------RKPL  344 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHH-HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------------SHHH
T ss_pred             HHHHHHHHHhhhhHHHhcc-hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-c---------------Ccch
Confidence            3333344444455454444 445567788888777777777888889999999999998 9               9999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHH-HHHhcCCCccchhhhhhccCCCCChHHH
Q 041588          125 LVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGL-IALGTRDIKPCVSSFGADQYDEADEKEA  203 (540)
Q Consensus       125 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~g~~~~~~~~~~~d~~~~~~~~~~  203 (540)
                      ++.+.....++.+.++......                ..... .++...+ .+....+..|....+.+|.||.+.    
T Consensus       345 ~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~----  403 (491)
T 4gc0_A          345 QIIGALGMAIGMFSLGTAFYTQ----------------APGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI----  403 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT----------------CCHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT----
T ss_pred             hccchHHHHHHHHHHHHHHhcc----------------cchHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH----
Confidence            9999988888877766543211                11222 2222222 222222344677788999999998    


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------ccCcchhhhHhHHHHHHHHHHHHhcCccccc
Q 041588          204 IQKYVFFNWFFFAINMGAIFGITVLVYIQE------QKGWSVGFGIPTAFTICSIIIVAAGFPYYRY  264 (540)
Q Consensus       204 ~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~------~~g~~~~f~i~~~~~~~~~i~~~~~~~~~~~  264 (540)
                        |+++.++.+....+|+.+++.+.+.+.+      ..++...|++.+++.+++.+..++..||.+.
T Consensus       404 --R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          404 --RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence              9999999999999999998888776643      3456667777777777777776666676543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.78  E-value=9.7e-10  Score=112.45  Aligned_cols=163  Identities=10%  Similarity=-0.049  Sum_probs=124.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...+..++....++++..++|.|+++.+|++..+++.+.....++..++.++.|+++||+ |              
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~--------------  263 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S--------------  263 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-H--------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence            5667777888888888999999999999988999999999999999999999999999999997 7              


Q ss_pred             cchHHHHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCC
Q 041588          120 GRFRTLVVFSCI-YSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEA  198 (540)
Q Consensus       120 ~r~~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~  198 (540)
                       + + +..+... ...+..++.....                 ...+.+.+++...+.+++.+...+...++..|.+| +
T Consensus       264 -~-~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~  322 (375)
T 2gfp_A          264 -T-L-MWQSVICCLLAGLLMWIPDWF-----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F  322 (375)
T ss_dssp             -H-H-HHHHHHHHHHTSSSSSHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H
T ss_pred             -H-H-HHHHHHHHHHHHHHHHHHhhh-----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c
Confidence             6 2 2233222 2222221111100                 00134556667778889988889999999999886 4


Q ss_pred             ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHh
Q 041588          199 DEKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIP  244 (540)
Q Consensus       199 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~  244 (540)
                      +      |+++.++++...++|+.++|.+.+.+.+..+|...+.+.
T Consensus       323 ~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          323 L------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             H------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             c------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3      899999999999999999999999998877788777653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.92  E-value=2.3e-06  Score=91.33  Aligned_cols=122  Identities=12%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHH
Q 041588          123 RTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKE  202 (540)
Q Consensus       123 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~  202 (540)
                      +.+.++.++..++++++........            +....+...+.++.++.+++.+...+...++..|..|++.   
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---  438 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMD------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM---  438 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTT------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---
Confidence            4566666666666665544311000            0011234556677888899998888999999999999887   


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc--Cc---------chhhhHhHHHHHHHHHHHHhcCccc
Q 041588          203 AIQKYVFFNWFFFAINMGAIFGITVLVYIQEQK--GW---------SVGFGIPTAFTICSIIIVAAGFPYY  262 (540)
Q Consensus       203 ~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~--g~---------~~~f~i~~~~~~~~~i~~~~~~~~~  262 (540)
                         |+++.++++...++|+.++|.+.+++.+..  +|         ...|++.+++.+++.++++...+++
T Consensus       439 ---~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          439 ---KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             ---CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ---HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence               999999999999999999999999987642  23         2236666666666666655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.85
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.79
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.25

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.1e-19  Score=187.77  Aligned_cols=178  Identities=12%  Similarity=0.011  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           43 PFIIVNEVAERLAFFAI---AVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        43 ~~i~~~~~~~~~~~y~~---~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.++...++....+|..   .+.+..++. ++|+|.++.+++.+.+.++..++.+++|+++||+ |              
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g--------------   87 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N--------------   87 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence            44444444444444432   234445665 5899999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       ||+++.++.++..++.++.+.+....                 .+...+++.+++.|++.|...++..++++|.+|+++
T Consensus        88 -~r~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  149 (447)
T d1pw4a_          88 -PRVFLPAGLILAAAVMLFMGFVPWAT-----------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  149 (447)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHCHHHH-----------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             -chHHHHHHHHHHHHHHhhccccchhh-----------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc
Confidence             99999999999999888887653211                 235678889999999999999999999999999886


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQ-KGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~-~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                            |+..+++++.+.++|+.++|.+++.+.+. .+|++.|++.++..++..++.+...+
T Consensus       150 ------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         150 ------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             ------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence                  99999999999999999999998877665 47999998877776655555444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.1e-17  Score=168.68  Aligned_cols=182  Identities=9%  Similarity=-0.120  Sum_probs=123.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcc
Q 041588           40 KASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQ  119 (540)
Q Consensus        40 ~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~  119 (540)
                      |.+|.+.+..++..+++....+.++.|+++++|+|..+.|++.+++.+...++.+++|+++||+ |              
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-g--------------   71 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G--------------   71 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-T--------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence            6789898989999999988899999999999999999999999999999999999999999998 9              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCC
Q 041588          120 GRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEAD  199 (540)
Q Consensus       120 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~  199 (540)
                       |||+++++..+..++..++......+.                 .....++...+.+.+.+...........+..++  
T Consensus        72 -rr~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  131 (417)
T d1pv7a_          72 -LRKYLLWIITGMLVMFAPFFIFIFGPL-----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--  131 (417)
T ss_dssp             -TCTHHHHHHHHHHHTHHHHHHHTHHHH-----------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--
T ss_pred             -chHHHHHHHHHHHHHHHHHHHhhhhhh-----------------HHHHHHHHHHHhhhcccccccchhhcccccccc--
Confidence             999999999888888777776521100                 011112222222222222222222222222111  


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHhcC
Q 041588          200 EKEAIQKYVFFNWFFFAINMGAIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAAGF  259 (540)
Q Consensus       200 ~~~~~~r~~~~~~~~~~~~iG~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~  259 (540)
                        +..++....+........+..++|.+++++.+. +|+..+........+..++.....
T Consensus       132 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  188 (417)
T d1pv7a_         132 --VSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             --HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             --hhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHh
Confidence              112255566677778888899999999988775 455555554444444444443433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=4.8e-13  Score=137.00  Aligned_cols=182  Identities=14%  Similarity=0.045  Sum_probs=140.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhh
Q 041588           38 GWKASPFIIVNEVAERLAFFAIAVNMTAYLVREMHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFK  117 (540)
Q Consensus        38 ~~~~~~~i~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~  117 (540)
                      +.+.++.+....++.....+++..+++.|+.+.++++..+++.......+...++.+++|+++||+ +            
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~------------  313 (447)
T d1pw4a_         247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F------------  313 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S------------
T ss_pred             cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-c------------
Confidence            346778888888899999999999999999999999999999999999999999999999999998 7            


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCC
Q 041588          118 LQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRPPACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDE  197 (540)
Q Consensus       118 ~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~  197 (540)
                         |++..........+..+.+......                ...+.....+..++.+++.++..+....+..|.+|+
T Consensus       314 ---~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  374 (447)
T d1pw4a_         314 ---RGNRGATGVFFMTLVTIATIVYWMN----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK  374 (447)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHTTSC----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred             ---ccccccccchhHHHHHHHHHHHHhc----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence               6654444443333322222222111                113455666667778888888888888899999998


Q ss_pred             CChHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHhhhhccCcchhhhHhHHHHHHHHHHHHh
Q 041588          198 ADEKEAIQKYVFFNWFFFAINMG-AIFGITVLVYIQEQKGWSVGFGIPTAFTICSIIIVAA  257 (540)
Q Consensus       198 ~~~~~~~~r~~~~~~~~~~~~iG-~~i~p~v~~~l~~~~g~~~~f~i~~~~~~~~~i~~~~  257 (540)
                      +.      |+++.++.+...+++ .+++|.+.|++.|.+||...|++.+++.+++.++...
T Consensus       375 ~~------~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         375 KA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             TH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            76      899999998888875 5668999999999999999998877766666555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.8e-12  Score=127.29  Aligned_cols=147  Identities=11%  Similarity=0.032  Sum_probs=120.8

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041588           71 MHQSLPTAGTHVTDWIGAAYVLTILGAFLADAYLGQPALKHVHAIFKLQGRFRTLVVFSCIYSVGMVLLTVSGSLDSLRP  150 (540)
Q Consensus        71 lg~s~~~a~~~~~~~~~~~~~~~~~gG~laD~~~G~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~  150 (540)
                      .+.+....+.......++..++.++.|+++||+ |               |++++.++.++..++.+++...        
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~---------------~~~~~~~~~~~~~~~~~~~~~~--------  309 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G---------------GKNALLLAGTIMSVRIIGSSFA--------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-C---------------HHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhccc-c---------------cccchhhhHHHHHHhhhccccc--------
Confidence            344555667777777888888899999999998 9               9999999999888888877765        


Q ss_pred             CCCCCCCCccCCCchhHHHHHHHHHHHHhcCCCccchhhhhhccCCCCChHHHHhhhhhHHHH-HHHHHHHHHHHHHHHH
Q 041588          151 PACKERPCVEVNGGQNGFLLCALGLIALGTRDIKPCVSSFGADQYDEADEKEAIQKYVFFNWF-FFAINMGAIFGITVLV  229 (540)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~-~~~~~iG~~i~p~v~~  229 (540)
                                   .+.+.+++..++.+++.+...+...++..|.+|++.      |++.++.. ..+..+|..++|.+.|
T Consensus       310 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G  370 (417)
T d1pv7a_         310 -------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             -------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         245667777888899999889999999999999987      89999985 4567899999999999


Q ss_pred             hhhhccCcchhhhHhHHHHHHHHHHHHhcCc
Q 041588          230 YIQEQKGWSVGFGIPTAFTICSIIIVAAGFP  260 (540)
Q Consensus       230 ~l~~~~g~~~~f~i~~~~~~~~~i~~~~~~~  260 (540)
                      ++.|+.||+..|++.+++.+++.++..+..+
T Consensus       371 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         371 NMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999998877777666666555443