Citrus Sinensis ID: 041598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MKRKNYMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIMTLDRVASMPLEDCHPNGLASLSSCMLQQVNNGDHERLLSDEGFLASVGWGRDQEPNLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccccEEEEcccHHHccccccccccccEEEccccccHcHccccccccccHHHHHHHccccHHHHHHccHHHHcccHccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHccccccccHHHHHHHccccHHHHHHcccccHcccccccccccccccEccccccEHHHccccccccccc
Coil and Loop (DISEMBL)
mkrknymaprgdnmsplweqeqwapcddcskwrklptdallppkwtcsdnvwdsirCSCSAAEEMIQKDLENLLRVGRESKKRKIVESQrrdqqnepsglDALATAAVLgdyagdagepssvgatttrhprhrpgctcivciqppsgkgkhkptctcnvcmtVKRRFKTLMLRKKRRQSEREVEVAQKnhsdqmgdsemngsvkqesvptshtdneisqtksqtevaesssaqigldlncypnredmqpeesrvsimtldrvasmpledchpnglaslSSCMLQqvnngdherllsdegflasvgwgrdqepnld
Flexible Loop (DISEMBL)
mkrknymaprgdnmsplweqEQWAPCDDCSKWRKlptdallppkwtcsdnvWDSIRCSCSAAEEMIQKDLENLlrvgreskkrkivesqrrdqqnepsgLDALATAAVLGDYAGDAGEPSSVgatttrhprhrpgCTCIVCIqppsgkgkhkptctcnvcmtvkrrFKTLMlrkkrrqserevevaqknhsdqmgdsemngsVKQEsvptshtdneisqtksqtevaesssaqigLDLNCYPNREDMQPEESRVSIMTLDRVASMPLEDCHPNGLASLSSCMLQQVNNGDHERLLSDEgflasvgwgrdqepnld
Low Complexity Region (SEG)
MKRKNYMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIMTLDRVASMPLEDCHPNGLASLSSCMLQQVNNGDHERLLSDEGFLASVGWGRDQEPNLD
Disordered region (IsUnstruct)
****************LWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENL********************************AAVLG***********************PGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLML*********************************************************************************************************L*SCMLQ**********L**EGFLASVGW*********
Disordered Region (DISOPRED)
****************LWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIR**************************************************************************************************************************************************************************************************************ASMP*************************************************
Disordered Region (DISEMBL)
***********DNMSPLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRESK****************SGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCIVCIQPP********TCTCNVCMTVKRRFKTLML***********************************************************AQIGLDLNCYPNREDMQPEESRVSIMTLDRVASMPLEDCHPNGLASLSSCMLQQVNNGDHERLLSDEGFLASVGWGRDQEPNLD
Disordered Region (DISPRO)
*************MSPLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRESKK*K*************SGLDALATAAVLGD*********************RPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRR**********************************************************L***CYPNRE*******RVSIMT*DRVASMPLEDCHPNGLAS********************EGFLASVGWGR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRKNYMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIMTLDRVASMPLEDCHPNGLASLSSCMLQQVNNGDHERLLSDEGFLASVGWGRDQEPNLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q8W4L5	790	B3 domain-containing tran	yes	no	0.612	0.244	0.628	2e-64
Q6Z3U3	949	B3 domain-containing prot	yes	no	0.793	0.263	0.488	2e-55
Q0D5G4	955	B3 domain-containing prot	no	no	0.739	0.243	0.460	1e-49
Q5CCK4	780	B3 domain-containing tran	no	no	0.685	0.276	0.430	8e-47
O65420	713	B3 domain-containing tran	no	no	0.336	0.148	0.367	3e-10
Q8TE76	937	MORC family CW-type zinc	yes	no	0.152	0.051	0.403	0.0008

>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 147/199 (73%), Gaps = 6/199 (3%)

Query: 16  PLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
           P  EQE+WA CDDCSKWR+LP DALL  KWTC DNVWD  RCSCSA EE + K+LEN+L+
Sbjct: 537 PSGEQERWATCDDCSKWRRLPVDALLSFKWTCIDNVWDVSRCSCSAPEESL-KELENVLK 595

Query: 76  VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
           VGRE KKR+  ESQ    Q EP GLDALA+AAVLGD     GEP    ATTTRHPRHR G
Sbjct: 596 VGREHKKRRTGESQAAKSQQEPCGLDALASAAVLGD---TIGEPEV--ATTTRHPRHRAG 650

Query: 136 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMG 195
           C+CIVCIQPPSGKG+HKPTC C VC TVKRRFKTLM+R+K++Q ER+V  A+      M 
Sbjct: 651 CSCIVCIQPPSGKGRHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAEDKKKKDME 710

Query: 196 DSEMNGSVKQESVPTSHTD 214
            +E + S +++ V T+  D
Sbjct: 711 LAESDKSKEEKEVNTARID 729

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/270 (48%), Positives = 168/270 (62%), Gaps = 20/270 (7%)

Query: 19  EQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
           EQ+QW  CDDCSKWR+LP + ++  KWTC+DN  DS  CSCSA EE+  K+L  +L+   
Sbjct: 625 EQDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDSKSCSCSAPEELTPKELHIVLQQYE 684

Query: 79  ESKKRKIVESQRRDQQNEPS----GLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRP 134
           + ++R+   +    +QN P      LDA ATAAV GD  G+ G PS   ATTT+HPRHRP
Sbjct: 685 DMRRRR---NSFGFKQNIPEMDAVSLDAFATAAVYGD-VGNQGSPSV--ATTTKHPRHRP 738

Query: 135 GCTCIVCIQPPSGKG-KHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQ 193
           GCTCIVCIQPPSGKG KH P CTCNVCMTV+RRFKTLM+RKK+RQSERE   A K  +  
Sbjct: 739 GCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSEREEAEASKKIA-W 797

Query: 194 MGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNR---EDMQPE 250
           M   E  GS    S  T  T    ++    T   +    +  +DLN +P     E+    
Sbjct: 798 MNRDEPEGSSLSRSPQTVDT----TRDGDVTMFDKVDINKGHIDLNFHPTAVRDEERHGG 853

Query: 251 ESRVSIMTLDRVASMPLED-CHPNGLASLS 279
           + RVS+++L  VA+ PLE+    NGL SL+
Sbjct: 854 QPRVSMVSLLEVANRPLENYMKQNGLTSLA 883

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/252 (46%), Positives = 151/252 (59%), Gaps = 19/252 (7%)

Query: 19  EQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRV-- 76
           E  QWA C+DCSKWRKLP DALLP KWTCSDN WDS R SC +A+E+  ++L  ++ +  
Sbjct: 710 ENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKP 769

Query: 77  GRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGC 136
           G   K +  V++   D  +   GLD LA  A+LG+      +P      TTRHPRHRPGC
Sbjct: 770 GAAKKTKGKVDTDNIDVSD---GLDTLANLAILGEGESLPSQP------TTRHPRHRPGC 820

Query: 137 TCIVCIQPPSGKG-KHKPTCTCNVCMTVKRRFKTLMLRK-KRRQSEREVEVAQKNHSDQM 194
           +CIVCIQPPSGKG KHK TCTCNVCMTV+RRF+TLM+R+ KR+QSE++  V +K    Q 
Sbjct: 821 SCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQS 880

Query: 195 GD--SEMNGSVKQESVPTSH----TDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQ 248
            +   +        S  + H    T+ E  +  S      SS  +  +DLN  P RED Q
Sbjct: 881 SEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQ 940

Query: 249 PEESRVSIMTLD 260
             +S  + +  D
Sbjct: 941 SPKSDATRLLRD 952

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/251 (43%), Positives = 149/251 (59%), Gaps = 35/251 (13%)

Query: 19  EQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
           EQEQW  CD C KWR+LP D LLPPKW+CSDN+ D  R SCSA +E+  ++ + L+R  +
Sbjct: 517 EQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPGRSSCSAPDELSPREQDTLVRQSK 576

Query: 79  ESKKRKIVES-QRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCT 137
           E K+R++  S ++ +Q  + S L++L  A +     G+ GE +   A TT+HPRHR GC+
Sbjct: 577 EFKRRRLASSNEKLNQSQDASALNSLGNAGI--TTTGEQGEITV--AATTKHPRHRAGCS 632

Query: 138 CIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDS 197
           CIVC QPPSGKGKHKP+CTC VC  VKRRF+TLMLRK+ +    +     ++ S+   ++
Sbjct: 633 CIVCSQPPSGKGKHKPSCTCTVCEAVKRRFRTLMLRKRNKGEAGQASQQAQSQSECRDET 692

Query: 198 EMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIM 257
           E+      ES+P               E+A    A   +DLN         P  SRVS+M
Sbjct: 693 EV------ESIPA-------------VELA----AGENIDLNS-------DPGASRVSMM 722

Query: 258 TLDRVASMPLE 268
            L + A+ PLE
Sbjct: 723 RLLQAAAFPLE 733

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2.

Arabidopsis thaliana (taxid: 3702)

>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 22/128 (17%)

Query: 122 VGATTTRHPRHRPGCTCIVCIQPPSGKG-KHKPTCTCNVCMTVKRRFKTLMLRKKRRQSE 180
           +  TTT+HPRHR GCTCI+CIQ PSG G KH   C+C VC T KRR ++L+LR++++Q E
Sbjct: 545 ISPTTTKHPRHRDGCTCIICIQSPSGIGPKHDRCCSCAVCDTNKRRRRSLLLRREKKQME 604

Query: 181 REVEVAQKNHSDQMGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAE--SSSAQIGLDL 238
           +E                      ++ +   ++DN + Q+ + +E  E  +S  ++ LDL
Sbjct: 605 KEDNA-------------------RKLLEQLNSDNGLHQSANNSENHERHASPLKVQLDL 645

Query: 239 NCYPNRED 246
           N  P +++
Sbjct: 646 NFKPEKDE 653

May be involved in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 23  WAPCDDCSKWRKLPTD---ALLPPKWTCSDNVWDSI-RCSCSAAEEMIQKDL 70
           W  CD+C KWRKLP     ++LP +W C  N      RCS    +E+  +DL
Sbjct: 426 WVQCDECLKWRKLPGKIDPSMLPARWFCYYNSHPKYRRCSVPEEQELTDEDL 477

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255565913	861	transcription factor, putative [Ricinus	0.907	0.332	0.603	2e-93
224145431	786	predicted protein [Populus trichocarpa]	0.828	0.332	0.610	2e-88
449519482	605	PREDICTED: B3 domain-containing transcri	0.784	0.408	0.624	1e-85
449439577	1195	PREDICTED: B3 domain-containing protein	0.784	0.206	0.624	3e-85
356569441	895	PREDICTED: B3 domain-containing transcri	0.901	0.317	0.536	1e-79
356537702	898	PREDICTED: B3 domain-containing transcri	0.730	0.256	0.637	1e-79
224140599	917	predicted protein [Populus trichocarpa]	0.841	0.288	0.571	6e-79
255575574	891	transcription factor, putative [Ricinus	0.819	0.289	0.571	5e-76
359478914	881	PREDICTED: B3 domain-containing protein	0.895	0.320	0.535	2e-75
356495129	876	PREDICTED: B3 domain-containing transcri	0.841	0.302	0.548	2e-74

>gi|255565913|ref|XP_002523945.1| transcription factor, putative [Ricinus communis] gi|223536792|gb|EEF38432.1| transcription factor, putative [Ricinus communis]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 221/300 (73%), Gaps = 14/300 (4%)

Query: 16  PLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
           P   QEQWA CDDCSKWRKLP DALLPPKWTC DNVWDS RC+CSA EEM  KDL+ LLR
Sbjct: 560 PSGGQEQWAQCDDCSKWRKLPEDALLPPKWTCLDNVWDSSRCTCSAPEEMNPKDLDTLLR 619

Query: 76  VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
             ++ K+R++ +  +   + EPSGLDALA+AAVLGD  GD GEP SVGA TT+HPRHRPG
Sbjct: 620 GSKDFKRRRMADRHKPSSECEPSGLDALASAAVLGDNIGDLGEP-SVGA-TTKHPRHRPG 677

Query: 136 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMG 195
           CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKK+RQSERE E++QK+ +D+  
Sbjct: 678 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREAEISQKDDNDRKD 737

Query: 196 DSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVS 255
           +  M G +    +  ++++NE +  + QTE+ E+SS QI  DLN +PNREDMQ +   +S
Sbjct: 738 EFAMIGRLSHAVLNLNNSENEGNYNRKQTEIPETSSGQI--DLNSHPNREDMQLDIQGLS 795

Query: 256 IMTLDRVASMPLED-CHPNGL--------ASLSSCMLQQVNNGDHERLLSDEGFLASVGW 306
           +M L   A++P ++    NGL        AS+ SC+  Q NNG+    LSDE FLASVGW
Sbjct: 796 MMNLANAANLPFDNYVKQNGLADFLCERQASMGSCLHSQ-NNGESLIRLSDEAFLASVGW 854

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145431|ref|XP_002325640.1| predicted protein [Populus trichocarpa] gi|222862515|gb|EEF00022.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 213/293 (72%), Gaps = 32/293 (10%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           QEQWA CDDCSKWRKLP DALLPPKWTCS+N WDS RC+CS  EEM  KDL+NLLRV ++
Sbjct: 519 QEQWAQCDDCSKWRKLPVDALLPPKWTCSENAWDSSRCTCSVPEEMTPKDLDNLLRVSKD 578

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCI 139
            KKR+I+ESQ+R Q  EPSGLDALA+AAVLGD   D+GEP SVGA TT+HPRHRPGCTCI
Sbjct: 579 FKKRRILESQKRFQNCEPSGLDALASAAVLGDNLDDSGEP-SVGA-TTKHPRHRPGCTCI 636

Query: 140 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEM 199
           VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKK+RQSERE E +QK++ D+  +SE 
Sbjct: 637 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREAETSQKDNMDRK-ESEA 695

Query: 200 NGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIMTL 259
           NG++K                        +S+ QI  DLNC+PNREDM  +   +S M L
Sbjct: 696 NGTMK------------------------TSAGQI--DLNCHPNREDMPLDMPGLSTMNL 729

Query: 260 DRVASMPLED-CHPNGLASL--SSCMLQQVNNGDHERLLSDEGFLASVGWGRD 309
             +A+ PL++    NGL+SL       Q  ++G+  R LSDE FLAS+GW  +
Sbjct: 730 VDLANTPLDNYIKQNGLSSLVWDQEGGQAQHSGESLRRLSDEAFLASIGWAHE 782

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519482|ref|XP_004166764.1| PREDICTED: B3 domain-containing transcription repressor VAL1-like [Cucumis sativus]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 198/253 (78%), Gaps = 6/253 (2%)

Query: 16  PLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
           P  EQ+QWA CDDCSKWR+LP D LLPPKW+CSDNVWD  RC+CSA EE+  K+ ENLLR
Sbjct: 309 PTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLR 368

Query: 76  VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
             ++ KKRKIV+SQ+  Q+ EPSGLDALA+AAVLGD   D  E      TTTRHPRHRPG
Sbjct: 369 ASKDFKKRKIVKSQKSIQELEPSGLDALASAAVLGDSIADLQE----SGTTTRHPRHRPG 424

Query: 136 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMG 195
           CTCIVCIQPPSGKGKHK TCTCNVC+TVKRRFKTLMLRKK+RQSEREVE   K+ + Q+ 
Sbjct: 425 CTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVEPLLKDRNPQLD 484

Query: 196 DSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVS 255
           ++ M+G+++  S+ T++++NE SQ++ + E A +SS QI  DLNC+P+REDM+ E + +S
Sbjct: 485 ETGMSGTLRGTSLQTNYSENEGSQSRIKDEEAANSSGQI--DLNCHPDREDMELEGAGLS 542

Query: 256 IMTLDRVASMPLE 268
            M+L   AS P++
Sbjct: 543 TMSLVEAASQPVD 555

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439577|ref|XP_004137562.1| PREDICTED: B3 domain-containing protein Os07g0679700-like [Cucumis sativus]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 198/253 (78%), Gaps = 6/253 (2%)

Query: 16   PLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
            P  EQ+QWA CDDCSKWR+LP D LLPPKW+CSDNVWD  RC+CSA EE+  K+ ENLLR
Sbjct: 899  PTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLR 958

Query: 76   VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
              ++ KKRKIV+SQ+  Q+ EPSGLDALA+AAVLGD   D  E      TTTRHPRHRPG
Sbjct: 959  ASKDFKKRKIVKSQKSIQELEPSGLDALASAAVLGDSIADLQE----SGTTTRHPRHRPG 1014

Query: 136  CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMG 195
            CTCIVCIQPPSGKGKHK TCTCNVC+TVKRRFKTLMLRKK+RQSEREVE   K+ + Q+ 
Sbjct: 1015 CTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVEPLLKDRNPQLD 1074

Query: 196  DSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVS 255
            ++ M+G+++  S+ T++++NE SQ++ + E A +SS QI  DLNC+P+REDM+ E + +S
Sbjct: 1075 ETGMSGTLRGTSLQTNYSENEGSQSRIKDEEAANSSGQI--DLNCHPDREDMELEGAGLS 1132

Query: 256  IMTLDRVASMPLE 268
             M+L   AS P++
Sbjct: 1133 TMSLVEAASQPVD 1145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569441|ref|XP_003552909.1| PREDICTED: B3 domain-containing transcription repressor VAL1-like [Glycine max]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/302 (53%), Positives = 214/302 (70%), Gaps = 18/302 (5%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           +EQWA CDDCSKWRKLP DALLPPKWTC +NVWDS RCSCSA EE+  +++ENLL+  ++
Sbjct: 587 KEQWAQCDDCSKWRKLPVDALLPPKWTCCENVWDSSRCSCSAPEELSSREIENLLKNNKD 646

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCI 139
            KKR+IVES +  Q++EPSGLDALA+AAVLG+   D  E S+    TT+HPRHRPGC+CI
Sbjct: 647 FKKRRIVESSKSIQEHEPSGLDALASAAVLGENLIDTAESSA--GVTTKHPRHRPGCSCI 704

Query: 140 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEM 199
           VCIQPPSGKG+HKPTCTCNVCMTVKRRFKTLMLRKK+RQSERE + AQK+ +    + + 
Sbjct: 705 VCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKDQTLPKDELDT 764

Query: 200 NGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSIMT- 258
           NG+ + +   TS  + E +  KSQ EV  SS+ QI  DLN +PNREDMQ E + +++ + 
Sbjct: 765 NGASRDD---TSQLEKE-AGLKSQHEVGGSSAGQI--DLNSHPNREDMQVETTGLNMSSH 818

Query: 259 LDRVASMPL-EDCHPNGLASL--------SSCMLQQVNNGDHERLLSDEGFLASVGWGRD 309
           L+   +  + E  + NGL +         +S +    +NG+ +R  SD    AS+ W ++
Sbjct: 819 LEPATNHTVGEFMNQNGLRNFNNEVQTGQNSSLHTPKSNGEGQRYFSDGRCFASIMWNQE 878

Query: 310 QE 311
           ++
Sbjct: 879 RK 880

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537702|ref|XP_003537364.1| PREDICTED: B3 domain-containing transcription repressor VAL1-like [Glycine max]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 185/237 (78%), Gaps = 7/237 (2%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           +EQWA CDDCSKWRKLP DALLPPKWTCS+NVWDS RCSCS  EE+  K+LENLL+  ++
Sbjct: 587 KEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDSSRCSCSVPEELSSKELENLLKTNKD 646

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCI 139
            KKR+I ES +  Q++E SGLDALA+AAVLG+   D  E SS GA TT+HPRHRPGC+CI
Sbjct: 647 FKKRRIAESSKSIQEHEASGLDALASAAVLGENLVDTAE-SSAGA-TTKHPRHRPGCSCI 704

Query: 140 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDSEM 199
           VCIQPPSGKG+HKPTCTCNVCMTVKRRFKTLMLRKK+RQSERE + AQK+ +    + + 
Sbjct: 705 VCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADTAQKDQTLLKDEPDT 764

Query: 200 NGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQIGLDLNCYPNREDMQPEESRVSI 256
           NG+ + +   TS  + E+   KSQ +V ESS+ QI  DLN +PNREDMQ E + +++
Sbjct: 765 NGAPRDD---TSRLEKEVGLNKSQHQVGESSTGQI--DLNSHPNREDMQVETTGLNM 816

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140599|ref|XP_002323669.1| predicted protein [Populus trichocarpa] gi|222868299|gb|EEF05430.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 163/285 (57%), Positives = 200/285 (70%), Gaps = 20/285 (7%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           QEQWA CD CSKWR+LP D LLPPKWTC DN WD  RCSCSA +E+  ++LENLLR+ ++
Sbjct: 595 QEQWAQCDSCSKWRRLPIDVLLPPKWTCVDNAWDQSRCSCSAPDELAPRELENLLRLTKD 654

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVG-ATTTRHPRHRPGCTC 138
            KKR+I  S R  Q++E SGLDALA AA+L    GDAGE S+   A TT+HPRHRPGC+C
Sbjct: 655 FKKRRITSSHRPAQEHESSGLDALANAAIL----GDAGEQSTTAVAATTKHPRHRPGCSC 710

Query: 139 IVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQK--NHSDQMGD 196
           IVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLM+RKK+RQSERE E+AQ+  + S    +
Sbjct: 711 IVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRIQHMSGPKDE 770

Query: 197 SEMNGSVKQESVPTSHTDNEIS-----QTKSQTEVAESSSAQIG---LDLNCYPNR-EDM 247
           +++  S K  S P   +DNE       ++KSQT    +  A  G   LDLNC+P R ED 
Sbjct: 771 ADVESSSKLASTPMDPSDNEARSGNELESKSQTNNLSNKLADSGKGHLDLNCHPGREEDS 830

Query: 248 QPEESRVSIMTLDRVASMPLED-CHPNGLASLSSCMLQQVNNGDH 291
           Q   +R+S+ +L +VAS+PLE     NGL SLS    QQ ++  H
Sbjct: 831 QAGLARMSMTSLLQVASLPLETYLKQNGLVSLSE---QQASSASH 872

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575574|ref|XP_002528687.1| transcription factor, putative [Ricinus communis] gi|223531859|gb|EEF33676.1| transcription factor, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/273 (57%), Positives = 195/273 (71%), Gaps = 15/273 (5%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           QEQW PCD C KWRKLP D LLPPKWTC+DN+ D  RCSCSA +E+  ++LENLLR+ ++
Sbjct: 568 QEQWTPCDSCCKWRKLPVDILLPPKWTCADNLGDQSRCSCSAPDELTPRELENLLRLNKD 627

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCI 139
            KKR+I    R  Q+ E SGLDALA AA+LGD A D G  ++  ATTT+HPRHRPGC+CI
Sbjct: 628 FKKRRITTILRPAQEQESSGLDALANAAILGDEA-DPG--TTAVATTTKHPRHRPGCSCI 684

Query: 140 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKN-HSDQMGD-S 197
           VCIQPPSGKGKHKP+CTCNVCMTVKRRFKT+MLRKK+RQSERE E+AQ+N H   + D +
Sbjct: 685 VCIQPPSGKGKHKPSCTCNVCMTVKRRFKTMMLRKKKRQSEREAEIAQRNQHISGLRDEA 744

Query: 198 EMNGSVKQESVPTSHTDNEIS-----QTKSQTEVAESSSAQIG---LDLNCYPNR-EDMQ 248
           E+  S K  S P   ++NE       ++KSQ+    +     G   +DLNC P+R E+ Q
Sbjct: 745 EVESSSKHASTPQDPSENEARSMNELESKSQSNNLSNKMVDAGKGHIDLNCQPDREEESQ 804

Query: 249 PEESRVSIMTLDRVASMPLED-CHPNGLASLSS 280
              +R+S+M+L +VAS+PLE     NGL SL S
Sbjct: 805 AGVARMSMMSLLQVASLPLETYLKQNGLTSLVS 837

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478914|ref|XP_002276326.2| PREDICTED: B3 domain-containing protein Os07g0679700-like [Vitis vinifera]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/299 (53%), Positives = 207/299 (69%), Gaps = 17/299 (5%)

Query: 20  QEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRE 79
           Q+QW  CD+CSKWRKLP D  LP KWTC+DN+WD  RCSCSA +E   K+ E+L R+G++
Sbjct: 572 QDQWGQCDNCSKWRKLPIDVFLPLKWTCADNIWDLSRCSCSAPDEWNPKESESLSRLGKD 631

Query: 80  SKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCI 139
            K++K +ES +  Q+ EP+GLDALA AAVL +  GD+GEPS+    TTRHPRHRPGC+CI
Sbjct: 632 YKRQKSMESHKLAQEGEPTGLDALANAAVLEENGGDSGEPSA--EATTRHPRHRPGCSCI 689

Query: 140 VCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQ-MGDSE 198
           VCIQPPSGKGKHK TC CNVCMTVKRRF+TLMLRKK+RQSE E E +Q  H    + +SE
Sbjct: 690 VCIQPPSGKGKHKSTCICNVCMTVKRRFRTLMLRKKKRQSEHEAESSQIKHQIHPINESE 749

Query: 199 MNGSVKQESVPTSHTDNEISQTKSQTE-VAESSSAQIGLDLNCYP-NREDMQPEESRVSI 256
           ++G V+  S+  +H+D E +Q+K Q E VAE+ + QI  DLNC P N ED+ P  + VS+
Sbjct: 750 ISGMVRNVSLQRNHSDGENNQSKIQEEVVAETGTGQI--DLNCRPDNEEDLLPGVTGVSM 807

Query: 257 MTLDRVASMPLE-DCHPNGLASL--------SSCMLQQVNNGDHERLLSDEGFLASVGW 306
            +L + AS PL+      GL SL        +S  L QV  G+ +  L+DE  L+ + W
Sbjct: 808 TSLVQAASHPLDFYLKQTGLTSLISDQPMSSNSRPLPQVTGGE-DGHLTDERSLSPLIW 865

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495129|ref|XP_003516433.1| PREDICTED: B3 domain-containing transcription repressor VAL2-like [Glycine max]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/279 (54%), Positives = 195/279 (69%), Gaps = 14/279 (5%)

Query: 21  EQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGRES 80
           EQW  CD CSKWRKLP D L PPKWTC +N+WD  RCSC+A  E+  ++L+NLLR+ +E 
Sbjct: 559 EQWTQCDSCSKWRKLPVDVLTPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEF 618

Query: 81  KKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCTCIV 140
           KK+++  SQR   ++E SGLDALA AA+LGD A D+G  S V  +TT+HPRHRPGC+CIV
Sbjct: 619 KKQRLAASQRLALEHESSGLDALANAAILGDDASDSGRTSVV--STTKHPRHRPGCSCIV 676

Query: 141 CIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNH-SDQMGDSEM 199
           CIQPPSGKGKHKPTCTCNVCMTVKRRFKTLM+RKK+RQSERE E+AQ+N  S +  D   
Sbjct: 677 CIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESE 736

Query: 200 NGSVKQESVPTSHTDNEIS-----QTKSQTE-VAESSSAQIGLDLNCYPNREDMQPEESR 253
             S  +   P    +NE+       ++SQ   VAE++  Q  LDLNC P+RED+Q   + 
Sbjct: 737 VDSTLRHLTPVDRLENEVRVQNELDSRSQNHAVAEAAKGQ--LDLNCQPDREDVQAWPNN 794

Query: 254 VSIMTLDRVASMPLED-CHPNGLASLSSCMLQQVNNGDH 291
           +S+ +L   A++PLE     NGL+SL S   QQ N+  +
Sbjct: 795 LSMTSLLEEANLPLETYLKRNGLSSLIS--EQQTNSASN 831

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2064417	790	HSI2 "high-level expression of	0.647	0.258	0.606	7.6e-64
TAIR|locus:2116592	780	HSL1 "HSI2-like 1" [Arabidopsi	0.574	0.232	0.489	5.1e-46
UNIPROTKB|F1SGX2	940	MORC3 "Uncharacterized protein	0.625	0.209	0.260	0.00011
RGD|1307924	679	Morc3 "MORC family CW-type zin	0.225	0.104	0.384	0.00019
RGD|1559905	928	Morc4 "MORC family CW-type zin	0.590	0.200	0.25	0.00023
MGI|MGI:1922996	928	Morc4 "microrchidia 4" [Mus mu	0.288	0.098	0.336	0.00033
UNIPROTKB|F1PFJ7	939	MORC3 "Uncharacterized protein	0.619	0.207	0.270	0.00039
UNIPROTKB|F1MFY1	960	MORC3 "Uncharacterized protein	0.152	0.05	0.442	0.00045
UNIPROTKB|Q8TE76	937	MORC4 "MORC family CW-type zin	0.250	0.084	0.321	0.00064
UNIPROTKB|F1P705	898	MORC4 "Uncharacterized protein	0.339	0.119	0.303	0.00079

TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 128/211 (60%), Positives = 150/211 (71%)

Query:    16 PLWEQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLR 75
             P  EQE+WA CDDCSKWR+LP DALL  KWTC DNVWD  RCSCSA EE + K+LEN+L+
Sbjct:   537 PSGEQERWATCDDCSKWRRLPVDALLSFKWTCIDNVWDVSRCSCSAPEESL-KELENVLK 595

Query:    76 VGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
             VGRE KKR+  ESQ    Q EP GLDALA+AAVLGD     GEP    ATTTRHPRHR G
Sbjct:   596 VGREHKKRRTGESQAAKSQQEPCGLDALASAAVLGD---TIGEPEV--ATTTRHPRHRAG 650

Query:   136 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMG 195
             C+CIVCIQPPSGKG+HKPTC C VC TVKRRFKTLM+R+K++Q ER+V  A+      M 
Sbjct:   651 CSCIVCIQPPSGKGRHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAEDKKKKDME 710

Query:   196 DSEMNGSVKQESVPTSHTD-NEISQTKSQTE 225
              +E + S +++ V T+  D N     K   E
Sbjct:   711 LAESDKSKEEKEVNTARIDLNSDPYNKEDVE 741

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 5.1e-46, P = 5.1e-46
 Identities = 94/192 (48%), Positives = 124/192 (64%)

Query:    19 EQEQWAPCDDCSKWRKLPTDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
             EQEQW  CD C KWR+LP D LLPPKW+CSDN+ D  R SCSA +E+  ++ + L+R  +
Sbjct:   517 EQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPGRSSCSAPDELSPREQDTLVRQSK 576

Query:    79 ESKKRKIVESQRR-DQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHRPGCT 137
             E K+R++  S  + +Q  + S L++L  A +     G+ GE +   A TT+HPRHR GC+
Sbjct:   577 EFKRRRLASSNEKLNQSQDASALNSLGNAGITT--TGEQGEITV--AATTKHPRHRAGCS 632

Query:   138 CIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQMGDS 197
             CIVC QPPSGKGKHKP+CTC VC  VKRRF+TLMLRK+ +      E  Q +   Q   S
Sbjct:   633 CIVCSQPPSGKGKHKPSCTCTVCEAVKRRFRTLMLRKRNKG-----EAGQASQQAQ-SQS 686

Query:   198 EMNGSVKQESVP 209
             E     + ES+P
Sbjct:   687 ECRDETEVESIP 698

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 57/219 (26%), Positives = 89/219 (40%)

Query:    21 EQWAPCDDCSKWRKLPTDAL--LPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
             + W  CD C KWRKLP D +  LP KW CS+N     R +C   EE   +D E+L+    
Sbjct:   410 QNWVQCDSCLKWRKLP-DGIDQLPEKWYCSNNPDPQFR-NCDVPEE--PED-EDLVHPTY 464

Query:    79 ESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTR-HPRHRPGCT 137
             E   +K  + + R + +E   +  + T          +   S V  +  R H        
Sbjct:   465 EKTYKKKDKEKSRTKLSET--IPRIPTELFFPTTPVSSQSFSPVKESVPRGHLSEAANTY 522

Query:   138 CIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTL--MLRKKRRQSEREVEVAQKNHSDQMG 195
              +  I    G  + +P        ++KRR  T   +L  K R+   +V      +S    
Sbjct:   523 TMRLINNHRGSPQSEPESN-----SLKRRLSTRSSILNAKNRKLSNQVF----ENSPYKD 573

Query:   196 DSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQI 234
             D E    +++ S P    D++I + K Q    E S  Q+
Sbjct:   574 DDEDVIILEENSTPKPAVDDDI-EVKLQQSHMEQSGVQV 611

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1307924 Morc3 "MORC family CW-type zinc finger 3" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 30/78 (38%), Positives = 41/78 (52%)

Query:    21 EQWAPCDDCSKWRKLPTDAL--LPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
             + W  CD C KWRKLP D +  LP KW CS+N     R +C   EE   +D E+L+    
Sbjct:   145 QTWVQCDACLKWRKLP-DGIDQLPEKWYCSNNPDPQFR-NCEVPEE--PED-EDLVHPTY 199

Query:    79 ESKKRKIVESQRRDQQNE 96
             E   +K  + + R +Q E
Sbjct:   200 EKTYKKTSKEKFRIRQPE 217

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0007569 "cell aging" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0016235 "aggresome" evidence=IEA;ISO

GO:0016605 "PML body" evidence=IEA;ISO

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA;ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA;ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

RGD|1559905 Morc4 "MORC family CW-type zinc finger 4" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 53/212 (25%), Positives = 85/212 (40%)

Query:    21 EQWAPCDDCSKWRKLP--TD-ALLPPKWTCSDNVWDSI-RCSCSAAEEMIQKDLENLL-- 74
             + W  CD+C KWRKLP   D + LP +W C  N      RCS    +E I +DL      
Sbjct:   421 QTWVQCDECLKWRKLPGKVDPSTLPARWFCYYNPHPKYKRCSVPEEQERIDEDLHRSKAK 480

Query:    75 -RVGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGDYAGDAGEPSSVGATTTRHPRHR 133
              +V    KK+K VES +    + P  +        L D         ++G      PR  
Sbjct:   481 QQVEIVEKKQKPVESDKYQVFSNPPKIPTPQNMTQLND--------KTIGYERINSPRLL 532

Query:   134 PGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKRRQSEREVEVAQKNHSDQ 193
             P         PP  K              + R++K L+L ++  +  R++   Q + +  
Sbjct:   533 PSVG-EESRSPPRLKSLDSSA------FQISRKYK-LILGEEPAEKRRKI---QTDTTLS 581

Query:   194 MGDSEMNGSVKQESVPTSHTDNEISQTKSQTE 225
               D  M+   ++    T++ + + S  KS +E
Sbjct:   582 PIDYSMSSYYRRVEAATAYPEGDNSPDKSSSE 613

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 33/98 (33%), Positives = 45/98 (45%)

Query:    21 EQWAPCDDCSKWRKLP--TD-ALLPPKWTCSDNVWDSI-RCSCSAAEEMIQKDLENLL-- 74
             + W  CD+C KWR+LP   D + LP +W C  N      RCS    +E I +DL      
Sbjct:   421 QTWVQCDECLKWRRLPGMVDPSTLPARWFCYYNPHPKFKRCSVPEEQERIDEDLHRSKAK 480

Query:    75 -RVGRESKKRKIVESQRRDQQNEPSGLDALATAAVLGD 111
              +V    KK+K +ES +    + P     L   A L D
Sbjct:   481 QQVEAAEKKQKPMESDKYQVFSNPPKTPPLQDMAELND 518

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 60/222 (27%), Positives = 89/222 (40%)

Query:    21 EQWAPCDDCSKWRKLPTDAL--LPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR 78
             + W  CD C KWRKLP D +  LP KW CS+N     R +C   EE   +DL +      
Sbjct:   408 QTWVQCDSCLKWRKLP-DGIDQLPEKWYCSNNPDPQFR-NCDVPEEPEDEDLVH--PTYE 463

Query:    79 ESKKRKIVESQRRDQQNEPSGLDA---LATAAVLGDYAGDAGEPSSVGATTTRHPRHRPG 135
             ++ K+K  E  R  Q      ++A     T  V G       E    G  +     + P 
Sbjct:   464 KTYKKKDKEKFRIRQPEMIPRINAELLFRTPPVSGQSFSPVKESVPRGHLSEVANTYAPR 523

Query:   136 CTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKT---LMLRKKRRQSEREVEVAQKNHSD 192
                   I    G  + +P         +KRR  T   ++  K RR + +  E A   + D
Sbjct:   524 L-----INNHRGSPQSEPENN-----NLKRRLSTRSSILNTKTRRLNNQAFENA--TYKD 571

Query:   193 QMGDSEMNGSVKQESVPTSHTDNEISQTKSQTEVAESSSAQI 234
                D E    +++ S P    D++I + KS+    E S  Q+
Sbjct:   572 D--DDEDVIILEENSTPKPAVDHDI-EVKSEQSHIEQSGHQV 610

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query:    21 EQWAPCDDCSKWRKLPTDAL--LPPKWTCSDNVWDSIRCSCSAAEEMIQKDL 70
             + W  CD C KWRKLP D +  LP KW CS+N     R +C   EE   +D+
Sbjct:   421 QTWVQCDSCLKWRKLP-DGIDQLPEKWYCSNNPDPQFR-NCDVPEEPEDEDV 470

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 0.00064, P = 0.00064
 Identities = 27/84 (32%), Positives = 41/84 (48%)

Query:    16 PLWEQEQWAPCDDCSKWRKLP---TDALLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLEN 72
             P    + W  CD+C KWRKLP     ++LP +W C  N     R  CS  EE    D E+
Sbjct:   419 PKVPDQTWVQCDECLKWRKLPGKIDPSMLPARWFCYYNSHPKYR-RCSVPEEQELTD-ED 476

Query:    73 LLRVGRESKKRKIVESQRRDQQNE 96
             L     + +++ + E ++   +NE
Sbjct:   477 LCLSKAKKQEQTVEEKKKMPMENE 500

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
 Identities = 37/122 (30%), Positives = 56/122 (45%)

Query:    16 PLWEQEQWAPCDDCSKWRKLP--TD-ALLPPKWTCSDNVWDSIR-CSCSAAEEMIQKDLE 71
             P    + W  CD+C KWRKLP   D + LP +W C  N     R CS    +E+I +DL 
Sbjct:   419 PKIPDQTWVQCDECLKWRKLPGKVDPSTLPARWFCYYNSHPKYRRCSVPEEQELIDEDLY 478

Query:    72 NLLRVGRES----KKRKIVESQRRDQQNEPSGLDALATAAVLGD----YAG-DA-GEPSS 121
              L +  ++     +K+ +V+++       P  + A+     L +    Y G D    P S
Sbjct:   479 -LSKAKKQDQALERKKLLVDNENHQVFVNPLKIPAIQNVDELNNKTIGYEGIDTPSRPPS 537

Query:   122 VG 123
             VG
Sbjct:   538 VG 539

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161312 hypothetical protein (917 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam07496	50	pfam07496, zf-CW, CW-type Zinc Finger	1e-09

>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 21 EQWAPCDDCSKWRKLP-----TDALLPPKWTCSDNVWDSIRCSCSAAEEM 65
          + W  CD C KWRKLP       + LP  W CS N   +   SC   EE+
Sbjct: 1  DYWVQCDKCLKWRKLPEEYEEIRSKLPDPWFCSMNPDPA-YNSCDDPEEI 49

This domain appears to be a zinc finger. The alignment shows four conserved cysteine residues and a conserved tryptophan. It was first identified by, and is predicted to be a "highly specialised mononuclear four-cysteine zinc finger...that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including...chromatin methylation status and early embryonic development." Weak homology to pfam00628 further evidences these predictions (personal obs: C Yeats). Twelve different CW-domain-containing protein subfamilies are described, with different subfamilies being characteristic of vertebrates, higher plants and other animals in which these domain is found. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PF07496	50	zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi	99.68
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	88.07

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.68  E-value=7.9e-18  Score=121.85  Aligned_cols=44  Identities=48%  Similarity=1.036  Sum_probs=30.2

Q ss_pred             CCeEecccCccccCCCCCC-----CCCCCceeecCCcCCCCCCCCccccc
Q 041598           21 EQWAPCDDCSKWRKLPTDA-----LLPPKWTCSDNVWDSIRCSCSAAEEM   65 (315)
Q Consensus        21 ~~WVQCD~C~KWRrLP~~~-----~lPd~W~C~mN~WD~~~~sCsaPEE~   65 (315)
                      +.|||||.|+|||+||.++     .+|+.|||+||+ |+.+++|++|||.
T Consensus         1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~-~~~~~sC~~pee~   49 (50)
T PF07496_consen    1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNP-DPPFNSCDAPEEI   49 (50)
T ss_dssp             -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS--CCC-STTS--SS
T ss_pred             CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCC-CCCCCCCCCcccC
Confidence            4799999999999999986     468899999999 8899999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.

>smart00249 PHD PHD zinc finger

Probab=88.07  E-value=0.56  Score=30.84  Aligned_cols=30  Identities=27%  Similarity=0.725  Sum_probs=22.5

Q ss_pred             CCCCeEecccCccccCC-----CCC-CCCCCCceee
Q 041598           19 EQEQWAPCDDCSKWRKL-----PTD-ALLPPKWTCS   48 (315)
Q Consensus        19 e~~~WVQCD~C~KWRrL-----P~~-~~lPd~W~C~   48 (315)
                      ....||+|+.|.+|-.+     +.. ...+..|+|.
T Consensus        10 ~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~   45 (47)
T smart00249       10 DGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCP   45 (47)
T ss_pred             CCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECc
Confidence            57889999999999733     333 3567789886

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
2l7p_A	100	Histone-lysine N-methyltransferase ASHH2; CW-domai	7e-18
2e61_A	69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	5e-11

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100

 Score = 76.8 bits (188), Expect = 7e-18
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 2  KRKNYMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDAL----LPPKWTCSDNVWDSIRC 57
              +M            +  W  CDDC KWR++P   +       +W C +N  D    
Sbjct: 7  VGSEFMVVDVTIEDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNN-SDKRFA 65

Query: 58 SCSAAEEMIQKDLENLLRVGRESKKRKIVESQRR 91
           CS ++EM  +++   L +G++       ++ +R
Sbjct: 66 DCSKSQEMSNEEINEELGIGQDEADAYDCDAAKR 99

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69

 Score = 56.9 bits (137), Expect = 5e-11
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 15 SPLWEQEQWAPCD--DCSKWRKLPTD---ALLPPKWTCSDNVWDSIRCSCSAAEE 64
          S   +   W  C   +C KWR+L  +   ++LP  W+C  N  D     C   EE
Sbjct: 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQN-TDVQYNRCDIPEE 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
2l7p_A	100	Histone-lysine N-methyltransferase ASHH2; CW-domai	99.81
2e61_A	69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	99.75
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	94.72
1we9_A	64	PHD finger family protein; structural genomics, PH	91.93
1wee_A	72	PHD finger family protein; structural genomics, PH	90.91
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	89.05
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	88.97
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	88.56
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	87.4
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	86.8
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	86.25

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}

Probab=99.81  E-value=3.5e-21  Score=157.10  Aligned_cols=72  Identities=28%  Similarity=0.678  Sum_probs=60.9

Q ss_pred             ccCCCCccCCCCCCCCCeEecccCccccCCCCCC----CCCCCceeecCCcCCCCCCCCcccccChHHHHHHHHhhH
Q 041598            6 YMAPRGDNMSPLWEQEQWAPCDDCSKWRKLPTDA----LLPPKWTCSDNVWDSIRCSCSAAEEMIQKDLENLLRVGR   78 (315)
Q Consensus         6 ~~~~~~f~~r~~~e~~~WVQCD~C~KWRrLP~~~----~lPd~W~C~mN~WD~~~~sCsaPEE~t~~eid~ll~~~~   78 (315)
                      |++--.....+.....+|||||.|+|||+||.++    .+|++|||+||+ |+.|++|++|||++++||+.+|+++.
T Consensus        11 ~~~~d~~~~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~   86 (100)
T 2l7p_A           11 FMVVDVTIEDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ   86 (100)
T ss_dssp             CCCCCSSCSSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred             eeeeeeccCCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence            3444444444555699999999999999999864    479999999998 99999999999999999999999864

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*

Probab=99.75  E-value=4.1e-19  Score=136.20  Aligned_cols=52  Identities=33%  Similarity=0.769  Sum_probs=47.4

Q ss_pred             CCCCCCCCeEecc--cCccccCCCCCC---CCCCCceeecCCcCCCCCCCCcccccCh
Q 041598           15 SPLWEQEQWAPCD--DCSKWRKLPTDA---LLPPKWTCSDNVWDSIRCSCSAAEEMIQ   67 (315)
Q Consensus        15 r~~~e~~~WVQCD--~C~KWRrLP~~~---~lPd~W~C~mN~WD~~~~sCsaPEE~t~   67 (315)
                      ...++..+|||||  .|+|||+||..+   .+|++|||+||+ |+.+++|++|||+++
T Consensus        10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~   66 (69)
T 2e61_A           10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWT   66 (69)
T ss_dssp             SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCC
T ss_pred             CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCC
Confidence            3457789999999  999999999986   589999999999 999999999999865

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=94.72  E-value=0.0037  Score=64.61  Aligned_cols=89  Identities=18%  Similarity=0.335  Sum_probs=55.0

Q ss_pred             CCCeEecc--cCccccCCCCCC----CCCCCceeecCCcCC-----CCCCCCcccccChHHHHHHHHhhHHHhhhhhhhh
Q 041598           20 QEQWAPCD--DCSKWRKLPTDA----LLPPKWTCSDNVWDS-----IRCSCSAAEEMIQKDLENLLRVGRESKKRKIVES   88 (315)
Q Consensus        20 ~~~WVQCD--~C~KWRrLP~~~----~lPd~W~C~mN~WD~-----~~~sCsaPEE~t~~eid~ll~~~~~~kKr~~~~s   88 (315)
                      .+-||||-  .|+|||+||...    .++.+.+|.+-. +.     .--.|+.||++-..+....     -|    ....
T Consensus        90 l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~  159 (776)
T 4gut_A           90 LPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLEVSNH-----WW----YSML  159 (776)
T ss_dssp             SCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHHTTST-----TT----TTTC
T ss_pred             CcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhhccch-----HH----HHhh
Confidence            48899999  999999999987    346799998853 22     3567999998533322110     01    0112


Q ss_pred             hcccccCCCCchhhhhhhhhhccccCCCCCCC
Q 041598           89 QRRDQQNEPSGLDALATAAVLGDYAGDAGEPS  120 (315)
Q Consensus        89 ~~~~~~~~aSgLDALanaAilGen~~~~~~~s  120 (315)
                      .-|-.-..+...+-|.  ++.-|.+||+...+
T Consensus       160 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~  189 (776)
T 4gut_A          160 ILPPLLKDSVAAPLLS--AYYPDCVGMSPSCT  189 (776)
T ss_dssp             CSCCCBSSCTTGGGCT--TSCGGGTTBCTTCC
T ss_pred             cCCHhhhcCccHHHHH--hhCCCcccCCCCCc
Confidence            2333444555566663  66677777754443

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=91.93  E-value=0.1  Score=37.61  Aligned_cols=31  Identities=23%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CCCCeEecccCccccCCCCC-C-----CCCCCceeec
Q 041598           19 EQEQWAPCDDCSKWRKLPTD-A-----LLPPKWTCSD   49 (315)
Q Consensus        19 e~~~WVQCD~C~KWRrLP~~-~-----~lPd~W~C~m   49 (315)
                      +...|||||.|..|=.+.=- +     ..++.|+|..
T Consensus        18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~   54 (64)
T 1we9_A           18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS   54 (64)
T ss_dssp             SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred             CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence            45789999999999443221 1     2367899865

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=90.91  E-value=0.2  Score=37.25  Aligned_cols=29  Identities=31%  Similarity=0.793  Sum_probs=20.6

Q ss_pred             CCeEecccCccccCCCC---C--CCCCCCceeec
Q 041598           21 EQWAPCDDCSKWRKLPT---D--ALLPPKWTCSD   49 (315)
Q Consensus        21 ~~WVQCD~C~KWRrLP~---~--~~lPd~W~C~m   49 (315)
                      ..|||||.|..|-.+.=   .  ..+|+.|+|..
T Consensus        29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~   62 (72)
T 1wee_A           29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR   62 (72)
T ss_dssp             SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred             CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence            47999999999954322   1  13578999964

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=89.05  E-value=0.25  Score=39.02  Aligned_cols=33  Identities=24%  Similarity=0.675  Sum_probs=24.1

Q ss_pred             CCCCCeEecccCccccCCCC---C-CCCCCCceeecC
Q 041598           18 WEQEQWAPCDDCSKWRKLPT---D-ALLPPKWTCSDN   50 (315)
Q Consensus        18 ~e~~~WVQCD~C~KWRrLP~---~-~~lPd~W~C~mN   50 (315)
                      .+...|||||.|.+|--+.=   . ..+|+.|||..-
T Consensus        37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C   73 (98)
T 2lv9_A           37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERC   73 (98)
T ss_dssp             SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTT
T ss_pred             cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCC
Confidence            44678999999999965432   1 256889999654

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=88.97  E-value=0.26  Score=36.75  Aligned_cols=30  Identities=20%  Similarity=0.670  Sum_probs=21.6

Q ss_pred             CCCeEecccCccccCCCCC---C-CCCCCceeec
Q 041598           20 QEQWAPCDDCSKWRKLPTD---A-LLPPKWTCSD   49 (315)
Q Consensus        20 ~~~WVQCD~C~KWRrLP~~---~-~lPd~W~C~m   49 (315)
                      ...|||||.|..|--+.=-   . ..|+.|+|..
T Consensus        30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~   63 (68)
T 3o70_A           30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK   63 (68)
T ss_dssp             TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred             CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence            5579999999999644321   1 4678999953

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=88.56  E-value=0.16  Score=38.05  Aligned_cols=31  Identities=19%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             CCCCeEecccCccccC-----CCC-CCCCCCCceeec
Q 041598           19 EQEQWAPCDDCSKWRK-----LPT-DALLPPKWTCSD   49 (315)
Q Consensus        19 e~~~WVQCD~C~KWRr-----LP~-~~~lPd~W~C~m   49 (315)
                      ....|||||.|..|=-     |.. .+...+.|+|..
T Consensus        21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~   57 (75)
T 3kqi_A           21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN   57 (75)
T ss_dssp             TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred             CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence            3578999999999942     222 223347898854

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=87.40  E-value=0.34  Score=33.92  Aligned_cols=29  Identities=21%  Similarity=0.683  Sum_probs=21.5

Q ss_pred             CCCeEecccCccccCCCCC-C---CCCCCceee
Q 041598           20 QEQWAPCDDCSKWRKLPTD-A---LLPPKWTCS   48 (315)
Q Consensus        20 ~~~WVQCD~C~KWRrLP~~-~---~lPd~W~C~   48 (315)
                      ...+||||.|..|--+.=- +   ..|+.|+|.
T Consensus        15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~   47 (52)
T 3o7a_A           15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ   47 (52)
T ss_dssp             TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred             CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence            5689999999999655332 1   457899885

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=86.80  E-value=0.47  Score=35.12  Aligned_cols=30  Identities=23%  Similarity=0.658  Sum_probs=20.9

Q ss_pred             CCCeEecccCcccc-----CCCCCCCCCCCceeec
Q 041598           20 QEQWAPCDDCSKWR-----KLPTDALLPPKWTCSD   49 (315)
Q Consensus        20 ~~~WVQCD~C~KWR-----rLP~~~~lPd~W~C~m   49 (315)
                      ...||+||.|..|=     .|+......+.|||..
T Consensus        30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~   64 (75)
T 2k16_A           30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK   64 (75)
T ss_dssp             SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred             CCCEEEcCCCCcccccccCCCCccCCCCCCEEChh
Confidence            45899999999995     3333333347999953

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=86.25  E-value=0.35  Score=33.92  Aligned_cols=34  Identities=21%  Similarity=0.642  Sum_probs=22.7

Q ss_pred             CCCCCCCCeEecc-cCccccCCCC-CC----CCCCCceee
Q 041598           15 SPLWEQEQWAPCD-DCSKWRKLPT-DA----LLPPKWTCS   48 (315)
Q Consensus        15 r~~~e~~~WVQCD-~C~KWRrLP~-~~----~lPd~W~C~   48 (315)
                      ++..+...||||| .|..|=.+.= ++    ..+++|+|.
T Consensus        10 ~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~   49 (52)
T 2kgg_A           10 RPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI   49 (52)
T ss_dssp             CCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred             CccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence            4455578899999 8999954432 22    124788884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	88.13
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	84.09
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	81.82
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	81.77

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.13  E-value=0.16  Score=35.66  Aligned_cols=31  Identities=29%  Similarity=0.681  Sum_probs=22.5

Q ss_pred             CCCCCeEecccCccccCCCC-----CCCCCCCceee
Q 041598           18 WEQEQWAPCDDCSKWRKLPT-----DALLPPKWTCS   48 (315)
Q Consensus        18 ~e~~~WVQCD~C~KWRrLP~-----~~~lPd~W~C~   48 (315)
                      .....|||||.|.+|-.+.=     .-..++.|+|.
T Consensus        26 ~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~   61 (72)
T d1weea_          26 DDGERMLACDGCGVWHHTRCIGINNADALPSKFLCF   61 (72)
T ss_dssp             CCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred             CCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECc
Confidence            34567999999999986632     12456889985

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.09  E-value=0.23  Score=34.06  Aligned_cols=32  Identities=22%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             CCCCCeEecccCccccCCC-----CCC-CCCCCceeec
Q 041598           18 WEQEQWAPCDDCSKWRKLP-----TDA-LLPPKWTCSD   49 (315)
Q Consensus        18 ~e~~~WVQCD~C~KWRrLP-----~~~-~lPd~W~C~m   49 (315)
                      .+...|||||.|.+|--.-     ... ...+.|+|..
T Consensus        17 ~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~   54 (64)
T d1we9a_          17 AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS   54 (64)
T ss_dssp             CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred             CCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcC
Confidence            3456799999999996432     111 3457899864

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.82  E-value=0.31  Score=34.12  Aligned_cols=17  Identities=24%  Similarity=0.669  Sum_probs=13.5

Q ss_pred             CCCCCeEecccCccccC
Q 041598           18 WEQEQWAPCDDCSKWRK   34 (315)
Q Consensus        18 ~e~~~WVQCD~C~KWRr   34 (315)
                      .+...|||||.|.+|=.
T Consensus        25 ~~~~~mi~Cd~C~~w~H   41 (76)
T d1wema_          25 HNNRFMICCDRCEEWFH   41 (76)
T ss_dssp             CCSSCEEECSSSCCEEE
T ss_pred             cCCCeEEEECCCCCcCC
Confidence            34567999999999943

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.77  E-value=0.31  Score=34.99  Aligned_cols=31  Identities=19%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             CCCCeEecccCccccCCCC-----C-CCCCCCceeec
Q 041598           19 EQEQWAPCDDCSKWRKLPT-----D-ALLPPKWTCSD   49 (315)
Q Consensus        19 e~~~WVQCD~C~KWRrLP~-----~-~~lPd~W~C~m   49 (315)
                      ....|||||.|..|--..=     . +...+.|+|..
T Consensus        23 ~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~   59 (79)
T d1wepa_          23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPD   59 (79)
T ss_dssp             SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred             CCCcEEECCCCCCcEeccccCcchhcCCCCCEEECcc
Confidence            4567999999999964321     1 13456798865