Citrus Sinensis ID: 041608

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFMHKGSISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFWKEDPHESNRE

cccccEEEEEEEEEEccccccccccEEEEEEccccEEEEEEEEcccccccccccHHHcccccccccccccccEEEEEcccccccccccccccccEEEEEEcccccccEEEEEccccccEEEcHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEEEcccEEEcEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHEEEEEEEEcccccccccccccccHHHHHHHHHEEEEccccccccccccEEEEEEHHHHHcccccccccccEEccccEEcccccccccccccHHHHHHHcccccccccEEEEEEccHHHHHHHHHcccccEEEccccccccccEEEEccccccccHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc

ccEEEEEEccEEEEEccccccccccEEEEEEEccccEEEEEEcccccEEEEcccccccccccccccccccccccEEEEcccccccccccccccEEEEEEcccccccEEEEEccccccccEEEEHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEcccccHcccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHHHEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHcccccccEEEEEccHHHHHHHHHcccccEEEEccccccccccEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc

iinsrftslsgnfqlvdgkltssgAFEIVNVIGKTLkrvgfwspiTRISKEMNSLVLFnkmnisspspnddeleaviwpggsaaipegggkinklrigvpvngFKELVNaardpqgtliVEGICIDVFKSAIdsltfevpyefipfedasgrmagsslyvdftlpytemgigmivpidqsnniwiflkplepnlwLTTAALFLLTSFVMWIIerpvndefqgsrahqfgMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNigsqlgsvvpgalsnlnfkdsrlkkyNSTKEYANALSKesknggisaiiDEMPYIKAFLAKYSAHytltapkntnstngfgfvfqkgssLVHDISKAIARLREEgtltkienewfidrqssfmhkgsisdnpsslsltnfgGLFLITGISLTLALVIFLLPsiykknafwkedphesnre

iinsrftslsgnfqlvdgkltssGAFEIVNVIgktlkrvgfwsPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANalskesknggisAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLreegtltkienewFIDRQSSFMHKGSISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIykknafwkedphesnre

IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNlwlttaalflltSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFMHKGSISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFWKEDPHESNRE

**********GNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKM***********LEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFK************************GISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSF************LSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFW**********

IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMN***************NDDELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKE***************AIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWF***********************NFGGLFLITGISLTLALVIFLLPSIY****************

IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLF************DELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQS*************SLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNA************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		448	2.2.26 [Sep-21-2011]
Q9LV72		867	Glutamate receptor 1.2 OS	yes	no	0.895	0.462	0.390	5e-82
Q9FH75		860	Glutamate receptor 1.3 OS	no	no	0.904	0.470	0.377	3e-76
Q8LGN0		952	Glutamate receptor 2.7 OS	no	no	0.948	0.446	0.356	3e-72
Q8LGN1		861	Glutamate receptor 1.4 OS	no	no	0.892	0.464	0.358	4e-69
Q9C5V5		947	Glutamate receptor 2.8 OS	no	no	0.939	0.444	0.355	8e-69
O04660		901	Glutamate receptor 2.1 OS	no	no	0.937	0.466	0.333	4e-67
Q9LFN5		918	Glutamate receptor 2.5 OS	no	no	0.928	0.453	0.331	8e-66
Q9LFN8		967	Glutamate receptor 2.6 OS	no	no	0.939	0.435	0.332	5e-65
Q9SHV1		920	Glutamate receptor 2.2 OS	no	no	0.839	0.408	0.337	4e-64
O81776		896	Glutamate receptor 2.4 OS	no	no	0.825	0.412	0.350	5e-64

>sp\|Q9LV72\|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=GLR1.2 PE=2 SV=1	Back alignment and function desciption

 Score =  305 bits (781), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 188/481 (39%), Positives = 268/481 (55%), Gaps = 80/481 (16%)

Query: 1   IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNK 60
           I  SRF  LSGNFQL D KL S   FEIVN+IG   +RVGFW+     S         N+
Sbjct: 357 IKESRFKGLSGNFQLDDMKLLSD-KFEIVNMIGSGERRVGFWNSNGSFS---------NR 406

Query: 61  MNISSPSPNDDELEAVIWPGGSAAIPEG-----GGKINKLRIGVPV-NGFKELVNAARDP 114
             +SS     D LE +IWPGGSA  P+G      G+  KLR+ V   N F  L+    DP
Sbjct: 407 RQLSS---THDNLETIIWPGGSAQSPKGRSLRESGR-KKLRVLVTSSNRFPRLMKVETDP 462

Query: 115 --QGTLIVEGICIDVFKSAIDSLTFEVPY------------------EFIPFEDASGRM- 153
                 IVEG CI+VF+++I    +EV Y                  +   ++ A G + 
Sbjct: 463 ITHEITIVEGFCIEVFQASIAPFNYEVEYIRWLNGTNYTKLAYALHSQKDKYDAAVGDIT 522

Query: 154 --AGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWI 211
             +  S+YVDFTLPYTEMG+G++   ++S  +W+F +PL PNLW+T+AA F+LT  ++W+
Sbjct: 523 ITSDRSMYVDFTLPYTEMGLGIVAAKERS--MWVFFQPLTPNLWITSAAFFVLTGIIVWL 580

Query: 212 IERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVL-------- 263
           IER  N EFQGS   Q G++ W+ FSTLV++ REKL  NLS+FVV VW+F +        
Sbjct: 581 IERAENKEFQGSWPQQIGVVIWFGFSTLVYAHREKLQHNLSRFVVTVWVFAVLILVTSYT 640

Query: 264 ---------------ASMDNIGSQLGSVVP-GALSNLNFKDSRLKKYNSTKEYANALSKE 307
                          A+ D +G   GS++   AL+N + +  RL   N++++YA AL   
Sbjct: 641 ATLTSMMTVQQIRFNANEDYVGHLSGSLIANAALTNSSLRAMRLLGLNTSEDYAQAL--- 697

Query: 308 SKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIA 367
             N  +S I+ E+PY+K  L +   H+ +   K  ++TNGFGF+FQKGS L  ++S+ IA
Sbjct: 698 -MNKSVSYIVSELPYLKILLGENPGHFLMV--KTQSTTNGFGFMFQKGSELAPNVSREIA 754

Query: 368 RLREEGTLTKIENEWFIDRQSSFMHKGSISDNPSSLSLTNFGGLFLITGISLTLALVIFL 427
           +LR    L ++E  WF D+Q  +    +  D  + ++L  F GLF+ITG+S   AL + L
Sbjct: 755 KLRTSERLNEMERRWF-DKQLPY----TTDDTSNPITLYRFRGLFMITGVSFAFALAVLL 809

Query: 428 L 428
           +
Sbjct: 810 I 810

Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FH75\|GLR13_ARATH Glutamate receptor 1.3 OS=Arabidopsis thaliana GN=GLR1.3 PE=2 SV=1	Back alignment and function description

>sp\|Q8LGN0\|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3	Back alignment and function description

>sp\|Q8LGN1\|GLR14_ARATH Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2 SV=2	Back alignment and function description

>sp\|Q9C5V5\|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2	Back alignment and function description

>sp\|O04660\|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2	Back alignment and function description

>sp\|Q9LFN5\|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2	Back alignment and function description

>sp\|Q9LFN8\|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2	Back alignment and function description

>sp\|Q9SHV1\|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1	Back alignment and function description

>sp\|O81776\|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
147767995		830	hypothetical protein VITISV_017200 [Viti	0.970	0.524	0.492	1e-115
297735388		884	unnamed protein product [Vitis vinifera]	0.966	0.489	0.488	1e-113
359485097		832	PREDICTED: glutamate receptor 2.2-like [	0.966	0.520	0.482	1e-111
297735389		704	unnamed protein product [Vitis vinifera]	0.966	0.615	0.482	1e-111
147852351		978	hypothetical protein VITISV_005870 [Viti	0.948	0.434	0.402	5e-93
147859199		971	hypothetical protein VITISV_020535 [Viti	0.928	0.428	0.398	2e-92
224142027		856	glutamate-gated kainate-type ion channel	0.924	0.483	0.418	2e-91
147787550		960	hypothetical protein VITISV_032974 [Viti	0.930	0.434	0.402	3e-91
224142035		869	glutamate-gated kainate-type ion channel	0.948	0.489	0.401	3e-91
224142043		885	glutamate-gated kainate-type ion channel	0.937	0.474	0.405	6e-91

>gi\|147767995\|emb\|CAN64921.1\| hypothetical protein VITISV_017200 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/504 (49%), Positives = 314/504 (62%), Gaps = 69/504 (13%)

Query: 1   IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNK 60
           I+ S+F  LSGNFQL DG+L    AF++VNV+G  +K +GFW+P   IS+E+N     + 
Sbjct: 292 ILQSQFNGLSGNFQLKDGQLEPV-AFQLVNVVGNGVKGIGFWTPKHGISRELN----LSD 346

Query: 61  MNISSPSPNDDELEAVIWPGGSAAIPEGGG---KINKLRIGVPV-NGFKELVNAARDPQ- 115
             + S S N   L+  IWPG SA  P+G        KLRIGVPV +GF ELV   RD Q 
Sbjct: 347 SQLYSTSAN--SLQPTIWPGLSAVTPKGWTMPVSAKKLRIGVPVIDGFTELVKVDRDLQT 404

Query: 116 GTLIVEGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGS------------------- 156
           G + V G CIDVFK+A+++L + + YEFIPF D +G  AG+                   
Sbjct: 405 GAVSVSGFCIDVFKAAVENLPYALTYEFIPFADYNGNSAGTYSDLVFQVYLQVFDAVVGD 464

Query: 157 -------SLYVDFTLPYTEMGIGMIVPID--QSNNIWIFLKPLEPNLWLTTAALFLLTSF 207
                  SLYVDFTLPYTE+G+GM+VPI+  ++ N+WIFL+PL  +LWL + A F+LT  
Sbjct: 465 VTITANRSLYVDFTLPYTELGVGMVVPIEIGKAKNMWIFLEPLTVDLWLVSGAFFILTGC 524

Query: 208 VMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVL---- 263
           ++W IER +NDEF+GS A Q GMIFWYSFSTLVFSQREKL SNLSKFVVIVW+F +    
Sbjct: 525 IVWFIERKINDEFKGSTAQQVGMIFWYSFSTLVFSQREKLISNLSKFVVIVWVFAVLILT 584

Query: 264 ----ASMDN---------------IGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYANAL 304
               AS+ +               IG Q GS+V   ++NLNF DS LK Y S + YA+AL
Sbjct: 585 SSYTASLSSMLTANRLQMLQKGSFIGYQKGSLVREVVNNLNFGDSSLKAYGSIEAYAHAL 644

Query: 305 SKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISK 364
           ++ SK GG+SAIIDE+PYIK FLA+Y   YT+  P+   +TNGFGF F KGS LV DIS 
Sbjct: 645 TEGSKKGGVSAIIDEIPYIKLFLAQYGDQYTMIEPEYL-TTNGFGFAFPKGSPLVPDISW 703

Query: 365 AIARLREEGTLTKIENEWFIDRQSSFMHKGSISDNPSSLSLTNFGGLFLITGISLTLALV 424
           AIA+LRE+G L  I+  WF  +  S   K      PS L   +F GLFL+TG S TLAL+
Sbjct: 704 AIAKLREDGKLDMIQQTWF--QYHSVFKKQESPTKPSILDSYSFCGLFLVTGTSSTLALI 761

Query: 425 IFLLPSIYKKNAFWKE-DPHESNR 447
           IF +  I  +N    E  PH SNR
Sbjct: 762 IFYVFLI--RNKLTSEGQPHLSNR 783

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297735388\|emb\|CBI17828.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359485097\|ref\|XP_002269061.2\| PREDICTED: glutamate receptor 2.2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735389\|emb\|CBI17829.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147852351\|emb\|CAN80118.1\| hypothetical protein VITISV_005870 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147859199\|emb\|CAN81029.1\| hypothetical protein VITISV_020535 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224142027\|ref\|XP_002324361.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222865795\|gb\|EEF02926.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147787550\|emb\|CAN75545.1\| hypothetical protein VITISV_032974 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224142035\|ref\|XP_002324364.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222865798\|gb\|EEF02929.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224142043\|ref\|XP_002324368.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222865802\|gb\|EEF02933.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
TAIR\|locus:2102975		808	GLR1.1 "glutamate receptor 1.1	0.642	0.356	0.345	4.7e-57
TAIR\|locus:2066148		940	GLR2.9 "glutamate receptor 2.9	0.562	0.268	0.317	2.9e-54
TAIR\|locus:2166001		867	ATGLR1.2 [Arabidopsis thaliana	0.602	0.311	0.301	4.1e-49
TAIR\|locus:2066107		952	GLR2.7 "glutamate receptor 2.7	0.325	0.153	0.414	2.2e-42
TAIR\|locus:2166006		860	GLR1.3 "glutamate receptor 1.3	0.294	0.153	0.401	1.2e-41
TAIR\|locus:2047256		920	GLR2.2 "glutamate receptor 2.2	0.323	0.157	0.389	1.3e-39
TAIR\|locus:2066086		947	GLR2.8 "glutamate receptor 2.8	0.238	0.112	0.504	4.6e-39
TAIR\|locus:2181196		901	GLR2.1 "glutamate receptor 2.1	0.305	0.152	0.384	1.7e-38
TAIR\|locus:2122128		912	GLUR2 "glutamate receptor 2" [	0.350	0.172	0.389	7.5e-38
TAIR\|locus:2047251		895	GLR2.3 "glutamate receptor 2.3	0.337	0.168	0.378	1.1e-37

TAIR\|locus:2102975 GLR1.1 "glutamate receptor 1.1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 439 (159.6 bits), Expect = 4.7e-57, Sum P(3) = 4.7e-57
 Identities = 110/318 (34%), Positives = 170/318 (53%)

Query:   133 DSLTFEVPYEFIPFEDASGRM---AGSSLYVDFTLPYTEMGIGMIVPIDQSNNIWIFLKP 189
             D+L + +  +   ++ A G +   +  SLYVDFTLPYT++GIG++    +S  +W F  P
Sbjct:   479 DNLAYLLSTQRDKYDAAVGDITITSNRSLYVDFTLPYTDIGIGILTVKKKSQGMWTFFDP 538

Query:   190 LEPNXXXXXXXXXXXXSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFS 249
              E +              V+W++ER VN EFQGS   Q  M+ W+ FST+VF+ REKL  
Sbjct:   539 FEKSLWLASGAFFVLTGIVVWLVERSVNPEFQGSWGQQLSMMLWFGFSTIVFAHREKLQK 598

Query:   250 NLSKFVVIVWLFVLASM-DNIGSQLGSVVPGALSNLNFK----------DSRLKKYNSTK 298
               S+F+VIVW+FV+  +  +  + L S    +   LN +           ++L   N+ +
Sbjct:   599 MSSRFLVIVWVFVVLILTSSYSANLTSTKTISRMQLNHQMVFGGSTTSMTAKLGSINAVE 658

Query:   299 EYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKNTNSTNGFGFVFQKGSSL 358
              YA  L    ++G ++ +I+E+PY+   +  Y   + +T  + TN TNGFGF+FQKGS L
Sbjct:   659 AYAQLL----RDGTLNHVINEIPYLSILIGNYPNDFVMT-DRVTN-TNGFGFMFQKGSDL 712

Query:   359 VHDISKAIARLREEGTLTKIENEWFIDRQSSFMHKGSIS------DNPSSLSLT--NFGG 410
             V  +S+ IA+LR  G L  +E +WF    S  +H  +        D+ +S   T     G
Sbjct:   713 VPKVSREIAKLRSLGMLKDMEKKWFQKLDSLNVHSNTEEVASTNDDDEASKRFTFRELRG 772

Query:   411 LFLITGIS--LTLALVIF 426
             LF+I G +  L LAL +F
Sbjct:   773 LFIIAGAAHVLVLALHLF 790

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0005261 "cation channel activity" evidence=IDA

GO:0005262 "calcium channel activity" evidence=IDA

GO:0005267 "potassium channel activity" evidence=IDA

GO:0005272 "sodium channel activity" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0006816 "calcium ion transport" evidence=IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IMP

TAIR\|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166001 ATGLR1.2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166006 GLR1.3 "glutamate receptor 1.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031372001	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (686 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		448
pfam00060		268	pfam00060, Lig_chan, Ligand-gated ion channel	2e-39
smart00079		133	smart00079, PBPe, Eukaryotic homologues of bacteri	2e-15
pfam00497		220	pfam00497, SBP_bac_3, Bacterial extracellular solu	3e-10
cd06366		350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	4e-08
smart00062		219	smart00062, PBPb, Bacterial periplasmic substrate-	1e-06
cd00134		218	cd00134, PBPb, Bacterial periplasmic transport sys	4e-06
COG0834		275	COG0834, HisJ, ABC-type amino acid transport/signa	8e-06
PRK09495		247	PRK09495, glnH, glutamine ABC transporter periplas	0.004

>gnl\|CDD\|215685 pfam00060, Lig_chan, Ligand-gated ion channel	Back alignment and domain information

 Score =  142 bits (361), Expect = 2e-39
 Identities = 69/271 (25%), Positives = 103/271 (38%), Gaps = 49/271 (18%)

Query: 194 LWLTTAALFLLTSFVMWIIERPVNDEFQGS----RAHQFGMIFWYSFSTLV-FSQREKLF 248
           +WL   A +LL   V++++ER    E++G              W+SF  LV    RE   
Sbjct: 2   VWLCILAAYLLVGVVLFLLERFSPYEWRGPPEEPNQFTLSNSLWFSFGALVQQGHRELPR 61

Query: 249 SNLSKFVVIVWLFV-----------LAS---------------------MDNIGSQLGSV 276
           S   + +V VW F            LA+                         G+  G  
Sbjct: 62  SLSGRILVGVWWFFALILLSSYTANLAAFLTVERMQSPIQSLEDLAKQNKIGYGTLRGGS 121

Query: 277 VPGALSNLNFKDSR--------LKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLA 328
                        R         K   + + Y   + +  K  G+ A + E  Y++  +A
Sbjct: 122 TFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLMESAYLEYEVA 181

Query: 329 KYSAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQS 388
           +     T         T G+G  F KGS L   +S+AI  LRE G L K+EN+W+  +  
Sbjct: 182 RDPCKLTTVGE--VFGTKGYGIAFPKGSPLRDKLSRAILELRESGELQKLENKWWKKKGE 239

Query: 389 SFMHKGSISDNPSSLSLTNFGGLFLITGISL 419
             +   ++S   S L L +F GLFLI GI L
Sbjct: 240 CSLKSTAVS--SSQLGLESFAGLFLILGIGL 268

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268

>gnl\|CDD\|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins	Back alignment and domain information

>gnl\|CDD\|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	Back alignment and domain information

>gnl\|CDD\|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)	Back alignment and domain information

>gnl\|CDD\|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>gnl\|CDD\|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>gnl\|CDD\|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236540 PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		448
KOG1054		897	consensus Glutamate-gated AMPA-type ion channel re	100.0
KOG1053		1258	consensus Glutamate-gated NMDA-type ion channel re	100.0
KOG4440		993	consensus NMDA selective glutamate-gated ion chann	100.0
KOG1052		656	consensus Glutamate-gated kainate-type ion channel	100.0
PRK09495		247	glnH glutamine ABC transporter periplasmic protein	99.83
PRK10797		302	glutamate and aspartate transporter subunit; Provi	99.82
PRK11260		266	cystine transporter subunit; Provisional	99.81
PRK15007		243	putative ABC transporter arginine-biding protein;	99.8
PF00497		225	SBP_bac_3: Bacterial extracellular solute-binding	99.79
PRK15010		260	ABC transporter lysine/arginine/ornithine binding	99.78
PRK09959		1197	hybrid sensory histidine kinase in two-component r	99.77
TIGR01096		250	3A0103s03R lysine-arginine-ornithine-binding perip	99.77
PRK11917		259	bifunctional adhesin/ABC transporter aspartate/glu	99.76
TIGR02995		275	ectoine_ehuB ectoine/hydroxyectoine ABC transporte	99.75
PRK15437		259	histidine ABC transporter substrate-binding protei	99.74
TIGR03870		246	ABC_MoxJ methanol oxidation system protein MoxJ. T	99.67
PRK10859		482	membrane-bound lytic transglycosylase F; Provision	99.64
PRK09959		1197	hybrid sensory histidine kinase in two-component r	99.61
TIGR02285		268	conserved hypothetical protein. Members of this fa	99.61
TIGR03871		232	ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa	99.59
COG0834		275	HisJ ABC-type amino acid transport/signal transduc	99.54
cd00134		218	PBPb Bacterial periplasmic transport systems use m	99.52
smart00062		219	PBPb Bacterial periplasmic substrate-binding prote	99.5
smart00079		134	PBPe Eukaryotic homologues of bacterial periplasmi	99.45
PF00060		148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	99.16
COG4623		473	Predicted soluble lytic transglycosylase fused to	98.93
PF10613		65	Lig_chan-Glu_bd: Ligated ion channel L-glutamate-	98.74
TIGR01098		254	3A0109s03R phosphate/phosphite/phosphonate ABC tra	98.26
PRK00489		287	hisG ATP phosphoribosyltransferase; Reviewed	97.63
TIGR03431		288	PhnD phosphonate ABC transporter, periplasmic phos	96.89
cd06377		382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	95.4
cd06365		469	PBP1_Pheromone_receptor Ligand-binding domain of t	93.75
cd06364		510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	92.68
PF07885		79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	85.95
PF12974		243	Phosphonate-bd: ABC transporter, phosphonate, peri	85.12
PRK11553		314	alkanesulfonate transporter substrate-binding subu	82.51
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	82.26

>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=7.3e-70  Score=522.47  Aligned_cols=406  Identities=21%  Similarity=0.354  Sum_probs=338.8

Q ss_pred             CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccchhhhhcccCCCCCCCCccCCcceecC
Q 041608            1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWP   79 (448)
Q Consensus         1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~wp   79 (448)
                      |++++++||||+|+| ..|+|+|+ +.+|++++.++.+++|+|.+..|+....+..    +.   .+...          
T Consensus       351 lk~v~~eGLTGniqFd~~G~R~Ny-t~~i~elk~~~~rk~~~W~e~~~fv~~~t~a----~~---~~d~~----------  412 (897)
T KOG1054|consen  351 LKQVQVEGLTGNIQFDKYGRRTNY-TIDIVELKSNGSRKVGYWNEGEGFVPGSTVA----QS---RNDQA----------  412 (897)
T ss_pred             HHheeecccccceeecccCccccc-eEEEEEeccCCcceeeeecccCceeeccccc----cc---ccccc----------
Confidence            578999999999999 89999999 9999999999999999999999987754321    00   00000          


Q ss_pred             CCCCCCCCCCCCCCeEEEEecc-CCcccceecccCCCCCeeEEEehHHHHHHHHHHCCCcccEEEEecC-----CCCCC-
Q 041608           80 GGSAAIPEGGGKINKLRIGVPV-NGFKELVNAARDPQGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFE-----DASGR-  152 (448)
Q Consensus        80 ~~~~~~p~~~~~~~~l~V~~~~-~p~~p~~~~~~d~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~-----~~~g~-  152 (448)
                          ..     +++++.|.+.. .||.++......-.|+.+|+|||+||+.+||+..+++|++.++++.     +.++. 
T Consensus       413 ----~~-----~n~tvvvttiL~spyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGardaD~k~  483 (897)
T KOG1054|consen  413 ----SK-----ENRTVVVTTILESPYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKI  483 (897)
T ss_pred             ----cc-----ccceEEEEEecCCchhHHHhhHHHhcCCcccceeHHHHHHHHHHhcCceEEEEEecCCcccccCCCccc
Confidence                00     55778888876 6665544321111788999999999999999999999999888764     34555 


Q ss_pred             cCC----------------------ccccccccccceecceEEEEEc--cCCCCceEeeccCChhHHHHHHHHHHHHHHH
Q 041608          153 MAG----------------------SSLYVDFTLPYTEMGIGMIVPI--DQSNNIWIFLKPLEPNLWLTTAALFLLTSFV  208 (448)
Q Consensus       153 ~~g----------------------R~~~vdFS~p~~~~~~~ilv~~--~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~  208 (448)
                      |+|                      |++++|||.|||++|++|++++  +..++.|+||.|+..++|+|++.+++.++++
T Consensus       484 WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvv  563 (897)
T KOG1054|consen  484 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVV  563 (897)
T ss_pred             ccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEE
Confidence            887                      9999999999999999999999  6788999999999999999999999999999


Q ss_pred             hhhhccccCCCCC------CC-------cccchhhHHHHHHHHhhhcccc-cccccccchhhhhhhhhh----hcc----
Q 041608          209 MWIIERPVNDEFQ------GS-------RAHQFGMIFWYSFSTLVFSQRE-KLFSNLSKFVVIVWLFVL----ASM----  266 (448)
Q Consensus       209 l~~~~r~~~~~~~------~~-------~~~~~~~~~w~~~~~l~~q~~~-~~~s~s~Ri~~~~W~~~~----sSy----  266 (448)
                      ++++.|++|++++      |.       ..+++.||+||+++++||||.+ .|||.||||+.++||||+    |||    
T Consensus       564 lFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANL  643 (897)
T KOG1054|consen  564 LFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL  643 (897)
T ss_pred             EEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHH
Confidence            9999999998764      21       2347999999999999999977 589999999999999998    888    


Q ss_pred             ------------------------cceeeecCCcHHhhhhcCCCCcccccccCCHHHHH-------------HHhccCcc
Q 041608          267 ------------------------DNIGSQLGSVVPGALSNLNFKDSRLKKYNSTKEYA-------------NALSKESK  309 (448)
Q Consensus       267 ------------------------~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~  309 (448)
                                              ..+|+..+.+..++++     .+++..|+.||.+|             +.+.+.|.
T Consensus       644 AAFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr-----~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRk  718 (897)
T KOG1054|consen  644 AAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFR-----RSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRK  718 (897)
T ss_pred             HHHHhHHhhcCcchhHHHHhhcceeeeeecCCCchHHHHh-----hhhHHHHHHHHHHHhcCCcceeeehhhhHHHHHHh
Confidence                                    3567777777776654     34555666666554             23444457


Q ss_pred             CCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCCC
Q 041608          310 NGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQS  388 (448)
Q Consensus       310 ~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~~  388 (448)
                      ..|.+||+.|++..+|.-++. | +-+.+|..  +++.+||+|.||||.|+..+|.|+++|.|.|++++|++|||-++ +
T Consensus       719 sKGkyAfLLEsTmNey~eqRkPC-DTMKVGgN--Lds~GYGiATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDk-G  794 (897)
T KOG1054|consen  719 SKGKYAFLLESTMNEYIEQRKPC-DTMKVGGN--LDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDK-G  794 (897)
T ss_pred             cCCceEeehHhhhhhhhhccCCc-cceecccc--cCCcceeecCCCCcccccchhhhhhhhcccchHHHhhhhhcccc-c
Confidence            789999999999999998877 9 45668888  99999999999999999999999999999999999999999999 9


Q ss_pred             ccCCCCC-CCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 041608          389 SFMHKGS-ISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFWKEDP  442 (448)
Q Consensus       389 ~c~~~~~-~~~~~~~l~l~~~~g~F~il~~g~~lallv~~~E~~~~~~~~~~~~~  442 (448)
                      +|..... .++++.+|+|.+++|+||||.+|+++|+++.++|++|++|...++..
T Consensus       795 eC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiEF~yksr~Eakr~k  849 (897)
T KOG1054|consen  795 ECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMK  849 (897)
T ss_pred             ccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            9998433 23456899999999999999999999999999999999988776544

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed	Back alignment and domain information

>PRK10797 glutamate and aspartate transporter subunit; Provisional	Back alignment and domain information

>PRK11260 cystine transporter subunit; Provisional	Back alignment and domain information

>PRK15007 putative ABC transporter arginine-biding protein; Provisional	Back alignment and domain information

>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane	Back alignment and domain information

>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein	Back alignment and domain information

>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed	Back alignment and domain information

>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein	Back alignment and domain information

>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional	Back alignment and domain information

>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ	Back alignment and domain information

>PRK10859 membrane-bound lytic transglycosylase F; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>TIGR02285 conserved hypothetical protein	Back alignment and domain information

>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein	Back alignment and domain information

>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>smart00062 PBPb Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins	Back alignment and domain information

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory	Back alignment and domain information

>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]	Back alignment and domain information

>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein	Back alignment and domain information

>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed	Back alignment and domain information

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein	Back alignment and domain information

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family	Back alignment and domain information

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []	Back alignment and domain information

>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A	Back alignment and domain information

>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		448
3kg2_A		823	Ampa Subtype Ionotropic Glutamate Receptor In Compl		6e-10
3rnn_A		292	Crystal Structure Of Iglur2 Ligand Binding Domain W		3e-05
3rn8_A		280	Crystal Structure Of Iglur2 Ligand Binding Domain A		3e-05

>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823

Back alignment and structure

Iteration: 1

Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 61/335 (18%) Query: 160 VDFTLPYTEMGIGMIV--PIDQSNNIWIFLKPLEPNXXXXXXXXXXXXSFVMWIIER--P 215 +DF+ P+ +GI +++ P ++ FL PL S V++++ R P Sbjct: 480 IDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSP 539 Query: 216 V---NDEFQGSRAHQ-------FGMI--FWYSFSTLVFSQREKLFSNLSKFVV--IVWLF 261 +EF+ R Q FG+ W+S + + +LS +V + W F Sbjct: 540 YEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFF 599 Query: 262 VL-----------------------ASMDNIGSQ----LGSVVPGALSNLNFKDSRLKKY 294 L S +++ Q G++ G+ F+ S++ + Sbjct: 600 TLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEF-FRRSKIAVF 658 Query: 295 NSTKEY-------------ANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKN 341 + Y A +++ K+ G A + E + ++ + T+ N Sbjct: 659 DKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLEST-MNEYIEQRKPCDTMKVGGN 717 Query: 342 TNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFMHKGSISDNPS 401 +S G+G KGSSL ++ A+ +L E+G L K++N+W+ D+ + S Sbjct: 718 LDS-KGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTS 776 Query: 402 SLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNA 436 +LSL+N G+F I L LA+++ L+ YK A Sbjct: 777 ALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRA 811

PyMOL of 3kg2

>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With Symmetric Sulfonamide Containing Potentiator Length = 292

Back alignment and structure

>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And Symmetrical Carboxyl Containing Potentiator Length = 280

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		448
3kg2_A		823	Glutamate receptor 2; ION channel, membrane protei	1e-59
2pvu_A		272	ARTJ; basic amino acid binding protein, ABC transp	2e-14
2iee_A		271	ORF2, probable ABC transporter extracellular-bindi	6e-14
4f3p_A		249	Glutamine-binding periplasmic protein; ssgcid, str	6e-13
2q88_A		257	EHUB, putative ABC transporter amino acid-binding	2e-12
3del_B		242	Arginine binding protein; alpha and beta protein (	3e-12
1yae_A		312	Glutamate receptor, ionotropic kainate 2; kainate	4e-12
2v3u_A		265	Glutamate receptor delta-2 subunit; postsynaptic m	5e-12
1ii5_A		233	SLR1257 protein; membrane protein; HET: GLU; 1.60A	3e-11
2rc8_A		294	Glutamate [NMDA] receptor subunit 3A; membrane pro	3e-11
1mqi_A		263	Glutamate receptor 2; GLUR2, ligand binding core,	4e-11
2yln_A		283	Putative ABC transporter, periplasmic binding Pro	4e-11
1wdn_A		226	GLNBP, glutamine binding protein; closed form, com	6e-11
2pyy_A		228	Ionotropic glutamate receptor bacterial homologue;	7e-11
2a5s_A		284	N-methyl-D-aspartate receptor nmdar2A subunit, NMD	8e-11
3kbr_A		239	Cyclohexadienyl dehydratase; pseudomonas aeruginos	1e-10
3tql_A		227	Arginine-binding protein; transport and binding pr	1e-10
3k4u_A		245	Binding component of ABC transporter; structural g	1e-10
3qax_A		268	Probable ABC transporter arginine-binding protein;	1e-10
1pb7_A		292	N-methyl-D-aspartate receptor subunit 1; ligand bi	2e-10
3hv1_A		268	Polar amino acid ABC uptake transporter substrate	2e-10
3g3k_A		259	Glutamate receptor, ionotropic kainate 2; membrane	3e-10
2y7i_A		229	STM4351; arginine-binding protein; HET: ARG; 1.90A	4e-10
3kzg_A		237	Arginine 3RD transport system periplasmic binding	5e-10
4dz1_A		259	DALS D-alanine transporter; D-alanine binding, per	7e-10
3h7m_A		234	Sensor protein; histidine kinase sensor domain, ki	1e-09
2o1m_A		258	Probable amino-acid ABC transporter extracellular-	2e-09
4eq9_A		246	ABC transporter substrate-binding protein-amino A	2e-09
3i6v_A		232	Periplasmic His/Glu/Gln/Arg/opine family-binding;	2e-09
2yjp_A		291	Putative ABC transporter, periplasmic binding Pro	9e-09
1lst_A		239	Lysine, arginine, ornithine-binding protein; amino	3e-08
1xt8_A		292	Putative amino-acid transporter periplasmic solut	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3h6g_A		395	Glutamate receptor, ionotropic kainate 2; membrane	4e-05
4f11_A		433	Gamma-aminobutyric acid type B receptor subunit 2;	4e-05
2vha_A		287	Periplasmic binding transport protein; periplasmic	9e-05
3om0_A		393	Glutamate receptor, ionotropic kainate 5; membrane	1e-04
3hsy_A		376	Glutamate receptor 2; ligand-gated ION channel, sy	1e-04
3saj_A		384	Glutamate receptor 1; rossman fold, ION channel, m	2e-04

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823	Back alignment and structure

 Score =  208 bits (529), Expect = 1e-59
 Identities = 77/519 (14%), Positives = 161/519 (31%), Gaps = 118/519 (22%)

Query: 1   IINSRFTSLSGNFQLVDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNK 60
           +   +   LSGN +        +    I+ +     +++G+WS + ++    +      +
Sbjct: 324 LKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDTSGLEQ 383

Query: 61  MNISSPSPNDDELEAVIWPGGSAAIPEGGGKINKLRIGVPVNGFKELVNAARDPQGTLIV 120
             +   +  +                               + +  +        G    
Sbjct: 384 KTVVVTTILE-------------------------------SPYVMMKANHAALAGNERY 412

Query: 121 EGICIDVFKSAIDSLTFEVPYEFIPFEDASGRMAGSSLY--------------------- 159
           EG C+D+         F+     +       R A + ++                     
Sbjct: 413 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 472

Query: 160 -------VDFTLPYTEMGIGMIV--PIDQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMW 210
                  +DF+ P+  +GI +++  P      ++ FL PL   +W+     ++  S V++
Sbjct: 473 TLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF 532

Query: 211 IIER--------------PVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLS-KFV 255
           ++ R                    + +         W+S    +    +    +LS + V
Sbjct: 533 LVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIV 592

Query: 256 VIVWLFV-----------LASMD---------------------NIGSQLGSVVPGALSN 283
             VW F            LA+                         G+            
Sbjct: 593 GGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR 652

Query: 284 LN-FKDSRLKKYNS-------TKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYT 335
                  ++  Y          +  A  +++  K+ G  A + E    +    +      
Sbjct: 653 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 712

Query: 336 LTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSFMHKGS 395
                    + G+G    KGSSL   ++ A+ +L E+G L K++N+W+ D+         
Sbjct: 713 KVGG--NLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSG 770

Query: 396 ISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKK 434
             +  S+LSL+N  G+F I    L LA+++ L+   YK 
Sbjct: 771 SKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKS 809

PyMOL of 3kg2

>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272	Back alignment and structure

>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271	Back alignment and structure

>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249	Back alignment and structure

>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257	Back alignment and structure

>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242	Back alignment and structure

>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312	Back alignment and structure

>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265	Back alignment and structure

>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233	Back alignment and structure

>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294	Back alignment and structure

>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263	Back alignment and structure

>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283	Back alignment and structure

>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226	Back alignment and structure

>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228	Back alignment and structure

>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284	Back alignment and structure

>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239	Back alignment and structure

>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227	Back alignment and structure

>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245	Back alignment and structure

>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Length = 268	Back alignment and structure

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292	Back alignment and structure

>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268	Back alignment and structure

>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259	Back alignment and structure

>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Length = 229	Back alignment and structure

>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237	Back alignment and structure

>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259	Back alignment and structure

>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234	Back alignment and structure

>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Length = 258	Back alignment and structure

>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246	Back alignment and structure

>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232	Back alignment and structure

>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291	Back alignment and structure

>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Length = 239	Back alignment and structure

>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Length = 292	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395	Back alignment and structure

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433	Back alignment and structure

>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Length = 287	Back alignment and structure

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393	Back alignment and structure

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376	Back alignment and structure

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		448
3kg2_A		823	Glutamate receptor 2; ION channel, membrane protei	100.0
1yae_A		312	Glutamate receptor, ionotropic kainate 2; kainate	99.91
1pb7_A		292	N-methyl-D-aspartate receptor subunit 1; ligand bi	99.89
2rc8_A		294	Glutamate [NMDA] receptor subunit 3A; membrane pro	99.88
4h5g_A		243	Amino acid ABC superfamily ATP binding cassette tr	99.88
3g3k_A		259	Glutamate receptor, ionotropic kainate 2; membrane	99.88
2a5s_A		284	N-methyl-D-aspartate receptor nmdar2A subunit, NMD	99.87
4gvo_A		243	LMO2349 protein; structural genomics, IDP05245, L-	99.87
2v3u_A		265	Glutamate receptor delta-2 subunit; postsynaptic m	99.85
3kzg_A		237	Arginine 3RD transport system periplasmic binding	99.85
3k4u_A		245	Binding component of ABC transporter; structural g	99.85
3i6v_A		232	Periplasmic His/Glu/Gln/Arg/opine family-binding;	99.85
1mqi_A		263	Glutamate receptor 2; GLUR2, ligand binding core,	99.84
4f3p_A		249	Glutamine-binding periplasmic protein; ssgcid, str	99.84
3hv1_A		268	Polar amino acid ABC uptake transporter substrate	99.84
3del_B		242	Arginine binding protein; alpha and beta protein (	99.84
3h7m_A		234	Sensor protein; histidine kinase sensor domain, ki	99.82
3tql_A		227	Arginine-binding protein; transport and binding pr	99.82
3kbr_A		239	Cyclohexadienyl dehydratase; pseudomonas aeruginos	99.81
2y7i_A		229	STM4351; arginine-binding protein; HET: ARG; 1.90A	99.8
3mpk_A		267	Virulence sensor protein BVGS; venus flytrap, sens	99.8
1wdn_A		226	GLNBP, glutamine binding protein; closed form, com	99.79
4eq9_A		246	ABC transporter substrate-binding protein-amino A	99.79
1ii5_A		233	SLR1257 protein; membrane protein; HET: GLU; 1.60A	99.79
1lst_A		239	Lysine, arginine, ornithine-binding protein; amino	99.78
2iee_A		271	ORF2, probable ABC transporter extracellular-bindi	99.78
4dz1_A		259	DALS D-alanine transporter; D-alanine binding, per	99.77
2q88_A		257	EHUB, putative ABC transporter amino acid-binding	99.76
4i62_A		269	Amino acid ABC transporter, periplasmic amino ACI	99.75
2pyy_A		228	Ionotropic glutamate receptor bacterial homologue;	99.74
3qax_A		268	Probable ABC transporter arginine-binding protein;	99.74
2yln_A		283	Putative ABC transporter, periplasmic binding Pro	99.74
2pvu_A		272	ARTJ; basic amino acid binding protein, ABC transp	99.73
2yjp_A		291	Putative ABC transporter, periplasmic binding Pro	99.73
1xt8_A		292	Putative amino-acid transporter periplasmic solut	99.73
2vha_A		287	Periplasmic binding transport protein; periplasmic	99.73
2v25_A		259	Major cell-binding factor; antigen, adhesin, aspar	99.54
4gpa_A		389	Glutamate receptor 4; PBP fold, ligand-gated ION c	98.54
3om0_A		393	Glutamate receptor, ionotropic kainate 5; membrane	97.94
3n5l_A		310	Binding protein component of ABC phosphonate TRAN;	97.8
3h6g_A		395	Glutamate receptor, ionotropic kainate 2; membrane	97.79
2ozz_A		231	Hypothetical protein YHFZ; alpha-beta structure, s	97.79
3p7i_A		321	PHND, subunit of alkylphosphonate ABC transporter;	97.61
3o21_A		389	Glutamate receptor 3; periplasmatic binding protei	97.38
4f11_A		433	Gamma-aminobutyric acid type B receptor subunit 2;	97.25
1dp4_A		435	Atrial natriuretic peptide receptor A; periplasmic	96.84
1jdp_A		441	NPR-C, atrial natriuretic peptide clearance recept	96.14
2x26_A		308	Periplasmic aliphatic sulphonates-binding protein;	95.1
3uif_A		348	Sulfonate ABC transporter, periplasmic sulfonate-	94.57
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	93.97
2e4u_A		555	Metabotropic glutamate receptor 3; G-protein-coupl	93.9
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	93.55
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	93.22
2a9h_A		155	Voltage-gated potassium channel; potassium channel	92.37
3ix1_A		302	N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine	91.75
3ksx_A		324	Nitrate transport protein; SSUA, alkanesulfonate-b	91.31
3un6_A		341	Hypothetical protein saouhsc_00137; structural gen	91.11
3ks9_A		496	Mglur1, metabotropic glutamate receptor 1; glutama	90.79
3sm9_A		479	Mglur3, metabotropic glutamate receptor 3; structu	90.45
3i45_A		387	Twin-arginine translocation pathway signal protei;	90.2
4h33_A		137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	87.59
3ldc_A		82	Calcium-gated potassium channel MTHK; transmembran	86.16
2f5x_A		312	BUGD; periplasmic binding protein, transport prote	84.65
3qsl_A		346	Putative exported protein; unknown, structural gen	84.29
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	83.42
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	82.37
2q67_A		114	Potassium channel protein; inverted teepee, helix	81.78
2dvz_A		314	BUGE, putative exported protein; periplamsic bindi	81.3
3lkb_A		392	Probable branched-chain amino acid ABC transporter	80.78
3ouf_A		97	Potassium channel protein; ION channel, membrane,	80.64

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}	Back alignment and structure

Probab=100.00  E-value=4.2e-54  Score=468.94  Aligned_cols=399  Identities=21%  Similarity=0.329  Sum_probs=311.5

Q ss_pred             CccceeeeeeeeEEe-eCCcccCCCCEEEEEecCCceEEEEEEcCCCCCccccchhhhhcccCCCCCCCCccCCcceecC
Q 041608            1 IINSRFTSLSGNFQL-VDGKLTSSGAFEIVNVIGKTLKRVGFWSPITRISKEMNSLVLFNKMNISSPSPNDDELEAVIWP   79 (448)
Q Consensus         1 ~~~~~~~G~tg~~~f-~~g~~~~~~~~~i~~~~~~~~~~~g~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~wp   79 (448)
                      |++++|+|+||++.| ++|++.++ .|+|+|++++|+++||.|++..|+.......               .++      
T Consensus       324 l~~~~f~G~tG~i~fd~~G~~~~~-~~~I~~~~~~g~~~vg~w~~~~g~~~~~~~~---------------~~~------  381 (823)
T 3kg2_A          324 LKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMVLTEDDT---------------SGL------  381 (823)
T ss_dssp             HTTCCCEETTEECCBCSSSCBCSC-EEEEEEECSSCEEEEEEEETTTEEEECCCCC---------------SSC------
T ss_pred             HHhcccCCcccCeEECCCCccccc-EEEEEEEcCCCCeeEEEEcCCCCceeccCcc---------------ccc------
Confidence            467899999999999 89999999 9999999999999999999998887542100               001      


Q ss_pred             CCCCCCCCCCCCCCeEEEEeccCCcccceeccc--CC-CCCeeEEEehHHHHHHHHHHCCCcccEEEEecCC------CC
Q 041608           80 GGSAAIPEGGGKINKLRIGVPVNGFKELVNAAR--DP-QGTLIVEGICIDVFKSAIDSLTFEVPYEFIPFED------AS  150 (448)
Q Consensus        80 ~~~~~~p~~~~~~~~l~V~~~~~p~~p~~~~~~--d~-~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~------~~  150 (448)
                                 ++++|+|++..  ++||++...  ++ ++++++.|||+||++++|+++||+++++.++++.      .+
T Consensus       382 -----------~~~~l~v~~~~--~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~  448 (823)
T 3kg2_A          382 -----------EQKTVVVTTIL--ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADT  448 (823)
T ss_dssp             -----------CCCCEEEEECC--CTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTT
T ss_pred             -----------CCCEEEEEEec--CCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCC
Confidence                       67999999976  334444321  11 5678899999999999999999998887776331      23


Q ss_pred             CCcCC----------------------ccccccccccceecceEEEEEc--cCCCCceEeeccCChhHHHHHHHHHHHHH
Q 041608          151 GRMAG----------------------SSLYVDFTLPYTEMGIGMIVPI--DQSNNIWIFLKPLEPNLWLTTAALFLLTS  206 (448)
Q Consensus       151 g~~~g----------------------R~~~vdFS~p~~~~~~~ilv~~--~~~~~~~~fl~PF~~~vWl~i~~~~~~~~  206 (448)
                      |.|++                      |++.+|||.||+.+++++++++  +...+++.|++||++++|+++++++++++
T Consensus       449 g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~  528 (823)
T 3kg2_A          449 KIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVS  528 (823)
T ss_dssp             CCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHH
Confidence            44655                      9999999999999999999998  34577899999999999999999999999


Q ss_pred             HHhhhhccccCCCCCCCc--------------ccchhhHHHHHHHHhhhcccc-cccccccchhhhhhhhhh----hcc-
Q 041608          207 FVMWIIERPVNDEFQGSR--------------AHQFGMIFWYSFSTLVFSQRE-KLFSNLSKFVVIVWLFVL----ASM-  266 (448)
Q Consensus       207 ~~l~~~~r~~~~~~~~~~--------------~~~~~~~~w~~~~~l~~q~~~-~~~s~s~Ri~~~~W~~~~----sSy-  266 (448)
                      +++|+++|.++.++..+.              ..++.+++|++++++++|+.. .|++.++|+++++|||++    ++| 
T Consensus       529 ~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yt  608 (823)
T 3kg2_A          529 VVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYT  608 (823)
T ss_dssp             TTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence            999999998765543221              225789999999999988855 579999999999999987    444 


Q ss_pred             ---------------------------cceeeecCCcHHhhhhcCCCCc-c----------cccccCCHHHHHHHhccCc
Q 041608          267 ---------------------------DNIGSQLGSVVPGALSNLNFKD-S----------RLKKYNSTKEYANALSKES  308 (448)
Q Consensus       267 ---------------------------~~v~~~~~s~~~~~l~~~~~~~-~----------~~~~~~~~~~~~~~l~~~~  308 (448)
                                                 ..+++..+++..+++++...+. .          ....+.+.+++++.++   
T Consensus       609 a~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  685 (823)
T 3kg2_A          609 ANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVR---  685 (823)
T ss_dssp             HHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHH---
T ss_pred             HHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHh---
Confidence                                       1367777777777776433221 0          1123458888888885   


Q ss_pred             cCCceEEEEcchhhHHHHHHcC-CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCC
Q 041608          309 KNGGISAIIDEMPYIKAFLAKY-SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQ  387 (448)
Q Consensus       309 ~~~~~~a~i~~~~~~~y~~~~~-c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~  387 (448)
                      ..++.+|++.|.+.++|+.+++ | +++.+++.  +...+|++++||||||++.||++|++|+|+|++++|.++|+.+. 
T Consensus       686 ~~~~~~A~~~~~~~~~y~~~~~~c-~l~~v~~~--~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~-  761 (823)
T 3kg2_A          686 KSKGKYAYLLESTMNEYIEQRKPC-DTMKVGGN--LDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDK-  761 (823)
T ss_dssp             TTTTSEEEEEEHHHHHHHHTSTTC-CEEEESCC--SSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTS-
T ss_pred             ccCCceEEEechHHHHHHHhcCCC-ceEEcccc--ccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCC-
Confidence            2456799999999999998887 9 79999999  99999999999999999999999999999999999999999887 


Q ss_pred             CccCCCCC-CCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 041608          388 SSFMHKGS-ISDNPSSLSLTNFGGLFLITGISLTLALVIFLLPSIYKKNAFWKED  441 (448)
Q Consensus       388 ~~c~~~~~-~~~~~~~l~l~~~~g~F~il~~g~~lallv~~~E~~~~~~~~~~~~  441 (448)
                      ..|..... ......+|+++++.|+|+++++|+++|+++|++|++|++++.+++.
T Consensus       762 ~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~~  816 (823)
T 3kg2_A          762 GECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRM  816 (823)
T ss_dssp             CSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhhhc
Confidence            88987322 2346679999999999999999999999999999999988877754

PyMOL of 3kg2

>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1	Back alignment and structure

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A	Back alignment and structure

>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A	Back alignment and structure

>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*	Back alignment and structure

>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...	Back alignment and structure

>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*	Back alignment and structure

>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A	Back alignment and structure

>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A	Back alignment and structure

>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0	Back alignment and structure

>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0	Back alignment and structure

>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0	Back alignment and structure

>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...	Back alignment and structure

>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}	Back alignment and structure

>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}	Back alignment and structure

>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0	Back alignment and structure

>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0	Back alignment and structure

>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0	Back alignment and structure

>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}	Back alignment and structure

>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}	Back alignment and structure

>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A	Back alignment and structure

>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A	Back alignment and structure

>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}	Back alignment and structure

>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A	Back alignment and structure

>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*	Back alignment and structure

>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}	Back alignment and structure

>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A	Back alignment and structure

>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*	Back alignment and structure

>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}	Back alignment and structure

>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}	Back alignment and structure

>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*	Back alignment and structure

>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A	Back alignment and structure

>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*	Back alignment and structure

>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}	Back alignment and structure

>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1	Back alignment and structure

>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*	Back alignment and structure

>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}	Back alignment and structure

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}	Back alignment and structure

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A	Back alignment and structure

>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}	Back alignment and structure

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*	Back alignment and structure

>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1	Back alignment and structure

>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A	Back alignment and structure

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A	Back alignment and structure

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*	Back alignment and structure

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*	Back alignment and structure

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*	Back alignment and structure

>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}	Back alignment and structure

>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}	Back alignment and structure

>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*	Back alignment and structure

>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}	Back alignment and structure

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*	Back alignment and structure

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}	Back alignment and structure

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}	Back alignment and structure

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A	Back alignment and structure

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A	Back alignment and structure

>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}	Back alignment and structure

>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}	Back alignment and structure

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		448
d1mqia_		260	c.94.1.1 (A:) Glutamate receptor ligand binding co	3e-11
d2a5sa1		277	c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate	3e-10
d1pb7a_		289	c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni	2e-09
d2f34a1		246	c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li	6e-09
d1ii5a_		226	c.94.1.1 (A:) Glutamate receptor ligand binding co	1e-07
d1wdna_		223	c.94.1.1 (A:) Glutamine-binding protein {Escherich	2e-05
d1lsta_		238	c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding	9e-05
d1xt8a1		248	c.94.1.1 (A:10-257) Putative amino-acid transporte	1e-04

>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Glutamate receptor ligand binding core
species: Rat (Rattus norvegicus), GluR2 [TaxId: 10116]

 Score = 61.2 bits (147), Expect = 3e-11
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 4/165 (2%)

Query: 224 RAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWLFVLASM--DNIGSQLGSVVPGAL 281
           R         +    +    ++      ++ +         ++   +             
Sbjct: 94  REEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVF 153

Query: 282 SNLNFKDSRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKAFLAKYSAHYTLTAPKN 341
             +       +     +  A  +++  K+ G  A + E    +    +            
Sbjct: 154 DKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRK--PCDTMKVGG 211

Query: 342 TNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDR 386
              + G+G    KGSSL + ++ A+ +L E+G L K++N+W+ D+
Sbjct: 212 NLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256

PyMOL of d1mqia_

>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277	Back information, alignment and structure

>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289	Back information, alignment and structure

>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246	Back information, alignment and structure

>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226	Back information, alignment and structure

>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223	Back information, alignment and structure

>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Length = 238	Back information, alignment and structure

>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Length = 248	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		448
d2a5sa1		277	N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt	99.94
d1pb7a_		289	N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt	99.92
d1mqia_		260	Glutamate receptor ligand binding core {Rat (Rattu	99.88
d1wdna_		223	Glutamine-binding protein {Escherichia coli [TaxId	99.88
d1xt8a1		248	Putative amino-acid transporter CjaA {Campylobacte	99.85
d1ii5a_		226	Glutamate receptor ligand binding core {Synechocys	99.83
d2f34a1		246	Glutamate receptor ligand binding core {Rat (Rattu	99.82
d1lsta_		238	Lysine-,arginine-,ornithine-binding (LAO) protein	99.8
d1dp4a_		425	Hormone binding domain of the atrial natriuretic p	97.6
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	95.32
d2ozza1		228	Hypothetical protein YhfZ {Shigella flexneri [TaxI	95.19
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	88.28
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	84.05
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	82.38

>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]

Probab=99.94  E-value=3.9e-27  Score=221.22  Aligned_cols=194  Identities=18%  Similarity=0.290  Sum_probs=152.9

Q ss_pred             CeeEEEehHHHHHHHHHHCCCcccEEEEecCC----CCCCcCC----------------------ccccccccccceecc
Q 041608          117 TLIVEGICIDVFKSAIDSLTFEVPYEFIPFED----ASGRMAG----------------------SSLYVDFTLPYTEMG  170 (448)
Q Consensus       117 ~~~~~G~~idll~~la~~l~f~~~~~~~~~~~----~~g~~~g----------------------R~~~vdFS~p~~~~~  170 (448)
                      ..+++|||+||+++||++|||+|+++.++++.    .++.|++                      |++.++||.||+.++
T Consensus        50 ~~~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~~~~  129 (277)
T d2a5sa1          50 KKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG  129 (277)
T ss_dssp             EEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEC
T ss_pred             ccceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcccCCceecc
Confidence            35789999999999999999999998887542    1334543                      999999999999999


Q ss_pred             eEEEEEc-cCCCCceEeeccCChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchhhHHHHHHHHhhhcccccccc
Q 041608          171 IGMIVPI-DQSNNIWIFLKPLEPNLWLTTAALFLLTSFVMWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFS  249 (448)
Q Consensus       171 ~~ilv~~-~~~~~~~~fl~PF~~~vWl~i~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~w~~~~~l~~q~~~~~~s  249 (448)
                      .++++++ ....+.+.|+.|++..                           .+                           
T Consensus       130 ~~ilv~k~~~~~~~~~~~~~~~~~---------------------------~~---------------------------  155 (277)
T d2a5sa1         130 ISVMVSRQVTGLSDKKFQRPHDYS---------------------------PP---------------------------  155 (277)
T ss_dssp             EEEEEETCCCSTTSHHHHSGGGSS---------------------------SC---------------------------
T ss_pred             eEEEEecCcccCChhHhcCccccc---------------------------hh---------------------------
Confidence            9999998 3444445555543211                           12                           


Q ss_pred             cccchhhhhhhhhhhcccceeeecCCcHHhhhhcCCCCc----ccccccCCHHHHHHHhccCccCCceEEEEcchhhHHH
Q 041608          250 NLSKFVVIVWLFVLASMDNIGSQLGSVVPGALSNLNFKD----SRLKKYNSTKEYANALSKESKNGGISAIIDEMPYIKA  325 (448)
Q Consensus       250 ~s~Ri~~~~W~~~~sSy~~v~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~y  325 (448)
                                       .++|+..+++.++++++. ++.    .....+.+..+++++|.+|+    +||++.|.+.+.|
T Consensus       156 -----------------~~~g~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~G~----~Da~i~d~~~~~y  213 (277)
T d2a5sa1         156 -----------------FRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNY  213 (277)
T ss_dssp             -----------------CCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHH
T ss_pred             -----------------eeeeccchhhHHHHHHHh-hhhhcceEEEecCCCHHHHHHHHHcCC----cceecccHHHHHH
Confidence                             578999999998888643 221    12234678899999996665    9999999999999


Q ss_pred             HHHcC--CCceEEeCCCccCCCCCeeEEEecCCccHHHHHHHHHhHhhcCchhHHHHHhcccCCCcc
Q 041608          326 FLAKY--SAHYTLTAPKNTNSTNGFGFVFQKGSSLVHDISKAIARLREEGTLTKIENEWFIDRQSSF  390 (448)
Q Consensus       326 ~~~~~--c~~l~~v~~~~~~~~~~~~~a~~k~spl~~~in~~il~l~e~G~l~~l~~kw~~~~~~~c  390 (448)
                      +++++  | ++..++....+...+|++|++|||||++.||++|.+|+++|.+++|.+||++   +.|
T Consensus       214 ~~~~~~~~-~l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~~l~~~G~~~~L~~KW~~---g~~  276 (277)
T d2a5sa1         214 KAGRDEGC-KLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT---GIC  276 (277)
T ss_dssp             HHHTCTTS-CEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC---CCC
T ss_pred             HHhhCCCC-cEEEecCCCCcCcceEEEEEeCChHHHHHHHHHHHHHHHCCHHHHHHhhhcC---CCC
Confidence            99875  7 6766654311678899999999999999999999999999999999999996   667

PyMOL of d2a5sa1

>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}	Back information, alignment and structure

>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}	Back information, alignment and structure

>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]}	Back information, alignment and structure

>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure