Citrus Sinensis ID: 041620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSNHINDSSR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEHHHHHHHHHHHHHHccccHHHHEcccHHHHHHHcc
Coil and Loop (DISEMBL)
mredtkvsnyskfdSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVgigfgnqsvplylsemttpkyrgtfNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFsnhindssr
Flexible Loop (DISEMBL)
mredtkvsnyskfdsqLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSnhindssr
Low Complexity Region (SEG)
MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSNHINDSSR
Disordered region (IsUnstruct)
***********KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSN*******
Disordered Region (DISOPRED)
*****K*SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSF*N*******
Disordered Region (DISEMBL)
*********YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSNHINDSSR
Disordered Region (DISPRO)
*******SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFS********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRYSFSNHINDSSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.895	0.301	0.703	6e-54
Q8L7R8	514	Sugar transport protein 3	yes	no	0.877	0.293	0.636	2e-45
Q41144	523	Sugar carrier protein C O	N/A	no	0.889	0.292	0.571	1e-42
P23586	522	Sugar transport protein 1	no	no	0.889	0.293	0.551	2e-41
Q9FMX3	514	Sugar transport protein 1	no	no	0.860	0.287	0.543	5e-40
Q9SX48	517	Sugar transport protein 9	no	no	0.895	0.297	0.538	7e-40
Q9LT15	514	Sugar transport protein 1	no	no	0.895	0.299	0.519	5e-39
O65413	508	Sugar transport protein 1	no	no	0.883	0.299	0.562	1e-38
Q94AZ2	526	Sugar transport protein 1	no	no	0.866	0.283	0.553	4e-38
O04249	513	Sugar transport protein 7	no	no	0.877	0.294	0.509	8e-38

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  209 bits (533), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDT++SNY KFDSQLLT+F SSLY+ G++AS  ASSVTRA GRK SIL+GG  FLA +
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    IG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KI+GGWGWRISLAMAA PA+ILT GA
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGA 218

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 119/154 (77%), Gaps = 3/154 (1%)

Query: 2   REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
           R     ++Y  F+SQLLT+F SSLY++G++A+L+ASSVTR+ GRK SI +GGV+FLAG+A
Sbjct: 72  RRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAA 131

Query: 62  LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
           LG  A N+ MLI  RLLLGVG+GF NQSVPLYLSEM   KYRG  + GFQLC  IG LSA
Sbjct: 132 LGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSA 191

Query: 122 NLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           N++N  TQ IK   GWRISLA AA PASILT+G+
Sbjct: 192 NVINYETQNIKH--GWRISLATAAIPASILTLGS 223

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 2   REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
           + D   + Y ++DSQ LT F SSLY+  ++ASL+AS++TR  GRK+S+L GGV F AG+ 
Sbjct: 68  KADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAI 127

Query: 62  LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
           +   A  ++MLI GR+LLG GIGF NQSVPLYLSEM   KYRG  NIGFQL   IG+L A
Sbjct: 128 INGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 187

Query: 122 NLLN-CTQKIKGGWGWRISLAMAAAPASILTIGA 154
           N+LN    KIKGGWGWR+SL  A  PA I+T+G+
Sbjct: 188 NVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGS 221

Ricinus communis (taxid: 3988)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 2   REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
           +ED   + Y ++DS  LT F SSLY+  +++SL+AS+VTR  GR++S+L GG+ F AG+ 
Sbjct: 66  QEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGAL 125

Query: 62  LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
           +   A +++MLI GR+LLG GIGF NQ+VPLYLSEM   KYRG  NIGFQL   IG+L A
Sbjct: 126 INGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185

Query: 122 NLLN-CTQKIKGGWGWRISLAMAAAPASILTIGA 154
            +LN    KIKGGWGWR+SL  A  PA I+TIG+
Sbjct: 186 EVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGS 219

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  163 bits (412), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 109/149 (73%), Gaps = 1/149 (0%)

Query: 6   KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC 65
           + + Y K+D++LLT F SSLY+  + AS +AS++TR  GRKVS++IG +AFL+G+ L   
Sbjct: 72  RETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGL 131

Query: 66  AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125
           A N+ MLI GRL LGVG+GF NQSVPLYLSEM   K RG  NIGFQL   IG+L+AN++N
Sbjct: 132 AINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVN 191

Query: 126 -CTQKIKGGWGWRISLAMAAAPASILTIG 153
             T K++ G GWR+SL +A  PA ++ +G
Sbjct: 192 YVTPKLQNGIGWRLSLGLAGVPAVMMLVG 220

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  162 bits (411), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 104/154 (67%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M E  + + Y KFD+QLL  F SSLY+  + +S +AS+VTR  GRK+S+ +GGVAFL GS
Sbjct: 67  MHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGS 126

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
                A N+ MLI GRLLLGVG+GF NQS P+YLSEM   K RG  NIGFQ+   IG+L 
Sbjct: 127 LFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILI 186

Query: 121 ANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N         GWR+SL +AA PA I+ IG+
Sbjct: 187 ANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGS 220

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  160 bits (404), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 104/154 (67%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M++    + Y KFD+Q+L  F SSLY+  ++AS +AS +TR  GRKVS+ IGG+AFL G+
Sbjct: 67  MKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGA 126

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
                A N+ MLI GRLLLGVG+GF NQS P+YLSEM   K RG  NIGFQ+   IG+L 
Sbjct: 127 LFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILV 186

Query: 121 ANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N         GWR+SL +AA PA ++ IG+
Sbjct: 187 ANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGS 220

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 106/153 (69%), Gaps = 1/153 (0%)

Query: 2   REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
           ++D   + Y +FDS  LT F SSLY+  + +SL+AS VTR  GRK+S+L+GGV F AG+ 
Sbjct: 66  KKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGAL 125

Query: 62  LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
           L   A  ++MLI GRLLLG GIGF NQSVPLYLSEM   KYRG  NIGFQL   IG+L A
Sbjct: 126 LNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185

Query: 122 NLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154
           N+LN     K  WGWR+SL  A  PA I+T+G+
Sbjct: 186 NVLNFFFS-KISWGWRLSLGGAVVPALIITVGS 217

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 107/150 (71%), Gaps = 1/150 (0%)

Query: 6   KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC 65
           K SNY K+D+Q L  F SSLY+ G+ A+  AS  TR LGR++++LI GV F+ G AL   
Sbjct: 71  KDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAG 130

Query: 66  AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125
           A ++ MLI GR+LLG G+GF NQ+VPL+LSE+   + RG  NI FQL   IG+L ANL+N
Sbjct: 131 AQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN 190

Query: 126 C-TQKIKGGWGWRISLAMAAAPASILTIGA 154
             T KIKGGWGWR+SL +A  PA +LT+GA
Sbjct: 191 YGTAKIKGGWGWRLSLGLAGIPALLLTVGA 220

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1

 Score =  155 bits (393), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 111/153 (72%), Gaps = 2/153 (1%)

Query: 2   REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
           ++    SNY K+D+Q L  F SSLY+ G++++L+AS +TR  GR+ SI+ GG++FL GS 
Sbjct: 69  KKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSG 128

Query: 62  LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
           L   A N+ ML+ GR++LGVGIGFGNQ+VPLYLSE+     RG  N+ FQL   IG+ +A
Sbjct: 129 LNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTA 188

Query: 122 NLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153
           N++N  TQ++K  WGWR+SL +AA PA ++T+G
Sbjct: 189 NMVNYGTQQLK-PWGWRLSLGLAAFPALLMTLG 220

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.895	0.302	0.741	4e-59
356517750	501	PREDICTED: hexose carrier protein HEX6-l	0.895	0.307	0.729	2e-57
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.895	0.303	0.683	8e-55
147816021	508	hypothetical protein VITISV_025873 [Viti	0.895	0.303	0.683	8e-55
47078687	508	putative hexose transporter [Vitis vinif	0.895	0.303	0.683	8e-55
224129904	516	predicted protein [Populus trichocarpa]	0.895	0.298	0.672	6e-54
357455797	510	Hexose carrier protein HEX6 [Medicago tr	0.895	0.301	0.683	1e-52
255539853	510	sugar transporter, putative [Ricinus com	0.895	0.301	0.709	2e-52
1708191	510	RecName: Full=Hexose carrier protein HEX	0.895	0.301	0.703	2e-52
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.877	0.296	0.677	1e-51

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 130/155 (83%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M++D K+SNY KFDSQLLTTF SSLYI G+LAS  ASS+TRA GRK SIL+GG AFL G+
Sbjct: 65  MKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGA 124

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  A NIYMLI GR+LLGVGIGF NQ+VPLYLSEM  P+YRG  NIGFQLC  IG+LS
Sbjct: 125 ALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLS 184

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KIK GWGWRISLAMAA PA+ILT+GA
Sbjct: 185 ANLINFGTEKIKDGWGWRISLAMAAVPATILTLGA 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M++DTKVSNY KFDSQLLT F SSLYI G++AS  ASSVTRA GRK SILIGG AFL G+
Sbjct: 64  MKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGA 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  A NIYMLI GR++LGVGIGF NQS PLYLSEM  P+YRG  N GFQLC  IG+LS
Sbjct: 124 ALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGVLS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KIK GWGWRISL MAA PAS+LT G+
Sbjct: 184 ANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGS 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDTK+SNY KFDSQLLT+F SSLYI G++AS +AS +T+  GRK +IL GG AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    +G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KIKGGWGWR+SLA+AA PASILT+GA
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGA 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDTK+SNY KFDSQLLT+F SSLYI G++AS +AS +T+  GRK +IL GG AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    +G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KIKGGWGWR+SLA+AA PASILT+GA
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGA 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDTK+SNY KFDSQLLT+F SSLYI G++AS +AS +T+  GRK +IL GG AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    +G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KIKGGWGWR+SLA+AA PASILT+GA
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGA 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 128/162 (79%), Gaps = 8/162 (4%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDTK+SNY KFDSQLLT+F SSLY+ G++AS  ASS+TR  GRK SIL GG AFL+GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGAAFLSGS 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQ-------SVPLYLSEMTTPKYRGTFNIGFQLC 113
           AL   A N+YMLIFGR+LLGVG+GF NQ       +VPLYLSEM  P+YRG  N GFQLC
Sbjct: 124 ALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAINNGFQLC 183

Query: 114 AAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
            AIG+LSAN +N  T+KI+GGWGWRISLAM A PA+ LTIG+
Sbjct: 184 IAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 122/155 (78%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+ D KVSNY  FDSQLLT+F SSLY+ G + S  AS VTR  GRK SI+ GG AFLAG+
Sbjct: 65  MKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIVAGGAAFLAGT 124

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  AFN+YMLI GRLLLGVG+GF NQ+VPLYLSEM  P++RG  N GFQL   IG LS
Sbjct: 125 ALGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRFRGAINNGFQLSIGIGALS 184

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KI+GGWGWR+SLAMAA PAS LT+GA
Sbjct: 185 ANLINYGTEKIEGGWGWRVSLAMAAVPASFLTLGA 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 128/155 (82%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDT++SNY KFDSQLLT+F SSLY+ G++AS  ASSVTRA GRK SIL+GG  FLAG+
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVFLAGA 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    IG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KI+GGWGWRISLAMAA PA+ILT GA
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGA 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 1   MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
           M+EDT++SNY KFDSQLLT+F SSLY+ G++AS  ASSVTRA GRK SIL+GG  FLA +
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123

Query: 61  ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
           ALG  A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEM  P+YRG  N GFQ    IG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183

Query: 121 ANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           ANL+N  T+KI+GGWGWRISLAMAA PA+ILT GA
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGA 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 122/152 (80%), Gaps = 1/152 (0%)

Query: 4   DTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG 63
           D KVSNY  FDSQLLT+F SSLY+ G++ S  AS +T+A GRK SI++GG AFLAG+ LG
Sbjct: 68  DDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGGAAFLAGTGLG 127

Query: 64  VCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL 123
             AFN+YMLI GRLLLGVG+GF NQ+VPLYLSEM  P+ RG  N GFQL   IG LSANL
Sbjct: 128 GAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRGAINNGFQLSIGIGALSANL 187

Query: 124 LNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
           +N  T+KI+GGWGWR+SLAMAA PAS+LT+GA
Sbjct: 188 INYGTEKIEGGWGWRMSLAMAAVPASVLTLGA 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.877	0.293	0.636	1.9e-44
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.889	0.293	0.551	5.9e-41
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.848	0.284	0.551	1.1e-39
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.883	0.294	0.544	7.8e-39
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.866	0.283	0.553	5.5e-38
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.843	0.282	0.530	7e-38
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.843	0.282	0.544	1.9e-37
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.854	0.285	0.527	6.3e-37
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.860	0.292	0.503	2.7e-36
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.843	0.287	0.530	4.4e-36

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 98/154 (63%), Positives = 119/154 (77%)

Query:     2 REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
             R     ++Y  F+SQLLT+F SSLY++G++A+L+ASSVTR+ GRK SI +GGV+FLAG+A
Sbjct:    72 RRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAA 131

Query:    62 LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
             LG  A N+ MLI  RLLLGVG+GF NQSVPLYLSEM   KYRG  + GFQLC  IG LSA
Sbjct:   132 LGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSA 191

Query:   122 NLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154
             N++N  TQ IK GW  RISLA AA PASILT+G+
Sbjct:   192 NVINYETQNIKHGW--RISLATAAIPASILTLGS 223

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 85/154 (55%), Positives = 111/154 (72%)

Query:     2 REDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA 61
             +ED   + Y ++DS  LT F SSLY+  +++SL+AS+VTR  GR++S+L GG+ F AG+ 
Sbjct:    66 QEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGAL 125

Query:    62 LGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121
             +   A +++MLI GR+LLG GIGF NQ+VPLYLSEM   KYRG  NIGFQL   IG+L A
Sbjct:   126 INGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185

Query:   122 NLLNCT-QKIKGGWGWRISLAMAAAPASILTIGA 154
              +LN    KIKGGWGWR+SL  A  PA I+TIG+
Sbjct:   186 EVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGS 219

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/147 (55%), Positives = 108/147 (73%)

Query:     8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF 67
             + Y K+D++LLT F SSLY+  + AS +AS++TR  GRKVS++IG +AFL+G+ L   A 
Sbjct:    74 TEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAI 133

Query:    68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN-C 126
             N+ MLI GRL LGVG+GF NQSVPLYLSEM   K RG  NIGFQL   IG+L+AN++N  
Sbjct:   134 NLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYV 193

Query:   127 TQKIKGGWGWRISLAMAAAPASILTIG 153
             T K++ G GWR+SL +A  PA ++ +G
Sbjct:   194 TPKLQNGIGWRLSLGLAGVPAVMMLVG 220

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 85/156 (54%), Positives = 107/156 (68%)

Query:     1 MREDTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60
             M E  + + Y KFD+QLL  F SSLY+  + +S +AS+VTR  GRK+S+ +GGVAFL GS
Sbjct:    67 MHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGS 126

Query:    61 ALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120
                  A N+ MLI GRLLLGVG+GF NQS P+YLSEM   K RG  NIGFQ+   IG+L 
Sbjct:   127 LFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILI 186

Query:   121 ANLLN--CTQKIKGGWGWRISLAMAAAPASILTIGA 154
             ANL+N   +Q  K GW  R+SL +AA PA I+ IG+
Sbjct:   187 ANLINYGTSQMAKNGW--RVSLGLAAVPAVIMVIGS 220

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 83/150 (55%), Positives = 107/150 (71%)

Query:     6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC 65
             K SNY K+D+Q L  F SSLY+ G+ A+  AS  TR LGR++++LI GV F+ G AL   
Sbjct:    71 KDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAG 130

Query:    66 AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125
             A ++ MLI GR+LLG G+GF NQ+VPL+LSE+   + RG  NI FQL   IG+L ANL+N
Sbjct:   131 AQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN 190

Query:   126 C-TQKIKGGWGWRISLAMAAAPASILTIGA 154
               T KIKGGWGWR+SL +A  PA +LT+GA
Sbjct:   191 YGTAKIKGGWGWRLSLGLAGIPALLLTVGA 220

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 78/147 (53%), Positives = 109/147 (74%)

Query:     8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF 67
             SNY K+D+Q L  F SSLY+ G++++L+AS +TR  GR+ SI+ GG++FL GS L   A 
Sbjct:    75 SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAV 134

Query:    68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC- 126
             N+ ML+ GR++LGVGIGFGNQ+VPLYLSE+     RG  N+ FQL   IG+ +AN++N  
Sbjct:   135 NLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYG 194

Query:   127 TQKIKGGWGWRISLAMAAAPASILTIG 153
             TQ++K  WGWR+SL +AA PA ++T+G
Sbjct:   195 TQQLKP-WGWRLSLGLAAFPALLMTLG 220

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/145 (54%), Positives = 100/145 (68%)

Query:    10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNI 69
             Y KFD+Q+L  F SSLY+  ++AS +AS +TR  GRKVS+ IGG+AFL G+     A N+
Sbjct:    76 YCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNV 135

Query:    70 YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQK 129
              MLI GRLLLGVG+GF NQS P+YLSEM   K RG  NIGFQ+   IG+L ANL+N    
Sbjct:   136 SMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTS 195

Query:   130 IKGGWGWRISLAMAAAPASILTIGA 154
                  GWR+SL +AA PA ++ IG+
Sbjct:   196 KMAQHGWRVSLGLAAVPAVVMVIGS 220

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/148 (52%), Positives = 102/148 (68%)

Query:     8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF 67
             + Y +FDSQLLT F SSLY+  +++SL AS++TR  GRK S+ +GG  F  GSA    A 
Sbjct:    71 NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQ 130

Query:    68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC- 126
             NI ML+ GR+LLG G+GF NQSVP+YLSEM  P  RG FN GFQ+    G++ A ++N  
Sbjct:   131 NIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYF 190

Query:   127 TQKIKGGWGWRISLAMAAAPASILTIGA 154
             T ++KG  GWRISL +A  PA ++ IGA
Sbjct:   191 TAQMKGNIGWRISLGLACVPAVMIMIGA 218

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/151 (50%), Positives = 109/151 (72%)

Query:     4 DTKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG 63
             + K + Y  +DSQLLT F SSLY+ G++ASL+AS +T A GR+ ++++GG  FL G+ + 
Sbjct:    68 EAKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALIN 127

Query:    64 VCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL 123
               A NI MLI GR+LLG G+GF NQ+ P+YLSE+  P++RG FNIGF    ++G+++ANL
Sbjct:   128 GLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANL 187

Query:   124 LNC-TQKIKGGWGWRISLAMAAAPASILTIG 153
             +N  T   + GW  RISL +AA PA+I+T+G
Sbjct:   188 INYGTDSHRNGW--RISLGLAAVPAAIMTVG 216

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 78/147 (53%), Positives = 103/147 (70%)

Query:     8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF 67
             ++Y K+D+Q+LT F SSLY  G++++  AS VTR  GR+ SIL+G V+F  G  +   A 
Sbjct:    75 TDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAK 134

Query:    68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC- 126
             NI MLI GR+ LG+GIGFGNQ+VPLYLSEM   K RGT N  FQL   IG+L ANL+N  
Sbjct:   135 NILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYK 194

Query:   127 TQKIKGGWGWRISLAMAAAPASILTIG 153
             T++I   WGWR+SL +A  PA ++ +G
Sbjct:   195 TEQIHP-WGWRLSLGLATVPAILMFLG 220

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HT4	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002307001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa)							•		0.481
	VvSUC11	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-23
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-21
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-04
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	3e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-04
PRK15075	434	PRK15075, PRK15075, citrate-proton symporter; Prov	0.002
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 14  DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYM 71
            + L    +S   +  ++ SL A  +    GRK S+LIG V F+ G+ L   A   + YM
Sbjct: 44  STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103

Query: 72  LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI 130
           LI GR+++G+G+G  +  VP+Y+SE+   K RG     +QL    G+L A ++     K 
Sbjct: 104 LIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKY 163

Query: 131 KGGWGWRISLAMAAAPASILTIG 153
               GWRI L +   PA +L IG
Sbjct: 164 SNSDGWRIPLGLQFVPAILLLIG 186

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 87.8 bits (218), Expect = 8e-21
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 9   NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC--- 65
           N   + S L    +S   + G + +L A  ++   GRK S+LI  + F+ G+ L      
Sbjct: 64  NSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF 123

Query: 66  AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125
           A ++ MLI GR+LLG+G+G  +  VP+YLSE+     RG     +QL    G+L A    
Sbjct: 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183

Query: 126 CTQKIKGG-WGWRISLAMAAAPASILTIG 153
             +       GWRI L +   PA +L +G
Sbjct: 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLG 212

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 13  FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYML 72
             +      +S+  +   L SL+A  ++   GR+  +L+G + F  GS L   A ++++L
Sbjct: 31  LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90

Query: 73  IFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKG 132
           + GR LLG+G G    +    ++E   PK RG     F     +G L   LL     +  
Sbjct: 91  LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL--GGLLAE 148

Query: 133 GWGWRISLAMAAAPASILTIGA 154
             GWR    + A    +L +  
Sbjct: 149 SLGWRWLFLILAILGLLLALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 11/143 (7%)

Query: 22  ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV 81
           +++  +   LA  +A  ++   GR+  +LIG + F  G  L + A ++++L+  R+L G+
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 82  GIGFGNQSVPLYLSEMTTPKYRGT----FNIGFQLCAAIGLLSANLLNCTQKIKGGWGWR 137
           G G    +    +++   P+ RG      + GF L AA+G L   LL         +GWR
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA------SLFGWR 151

Query: 138 ISLAMAAAPASILTIGASDWWYR 160
            +  +  A  ++L    +     
Sbjct: 152 -AAFLILAILALLAAVLAALLLP 173

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 34/162 (20%)

Query: 14  DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---------- 63
            + LL   ++S  I  I+   +    +   GR+ S+ I  V F   SALG          
Sbjct: 53  ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEFGFTS 111

Query: 64  --------VCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA 115
                   V  F IY     R++ G+G+G  +   P+Y++E+     RG      Q    
Sbjct: 112 IGPDNTGYVPEFVIY-----RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166

Query: 116 IGLLSANLLNCTQKIKGG----W----GWRISLAMAAAPASI 149
            G L    +N    I       W    GWR   A  A PA +
Sbjct: 167 FGQLVVYFVNYF--IARSGDASWLNTDGWRYMFASEAIPALL 206

Length = 479

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 2/140 (1%)

Query: 19  TTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLL 78
              ++   +  ++ S ++  +T   GRK  +L+G   F+  +A+   + NI +LI  R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 79  LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRI 138
            G G  F   +    ++++  P+ RG          A+G L    L     +    GWR 
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRA 118

Query: 139 SLAMAAAPASILTIGASDWW 158
                A  A    I  +   
Sbjct: 119 PFLFLAILALAAFILLAFLL 138

Length = 141

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 31  LASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSV 90
           L +  A  + R  G + S+ +  +   AG  +      + +L  G LL G GI   N  +
Sbjct: 62  LFAPAAPRLARRFGEERSLFLALLLIAAGILIRS-LGGLPLLFLGTLLAGAGIAVINVLL 120

Query: 91  PLYLSE---MTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPA 147
           P  +            G ++      AA+    A  L      +   GWR +L   A  A
Sbjct: 121 PSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPL-----AQHSGGWRGALGFWALLA 175

Length = 395

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 21  FISSLYITG-ILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLL 79
           F+ S  + G    +L    +   +GR+  +L   + F   + L   A N+  L+  R L 
Sbjct: 56  FLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115

Query: 80  GVGIGFGNQSVPLYLSEMTTPKYRGTF----NIGFQLCAAIGLLSANLL 124
           G+G+G    ++   +SE    ++RGT       G+ + AA+G   A  L
Sbjct: 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 71  MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQ---------LCAAIGLLSA 121
           +++ GRLL G   G     V +YL+E+ TP  +G F   +Q           A +G L  
Sbjct: 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG-FYTSWQSASQQVAVVFAALLGYLLN 177

Query: 122 NLLNCTQKIKGGWGWRI 138
             L  +      WGWRI
Sbjct: 178 QWL--SPAQMAEWGWRI 192

Length = 434

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 9   NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN 68
           +    D+  +    S  ++  +L S +   ++   GRK  +L+  +       L   + N
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179

Query: 69  IYMLIFGRLLLGVGI-GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCT 127
             + +  RLL+G+GI G   Q+V L   E    K R       Q+  ++GL+   L+   
Sbjct: 180 YTVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLV--- 235

Query: 128 QKIKGGW---GWRISLAMAAAPASILTIGASDWW 158
                 +    WR      + P + L    S W+
Sbjct: 236 -----AYFIPDWRWLQLAVSLP-TFLFFLLS-WF 262

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.87
PRK10091	382	MFS transport protein AraJ; Provisional	99.87
TIGR00893	399	2A0114 d-galactonate transporter.	99.87
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.87
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.87
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PRK11663	434	regulatory protein UhpC; Provisional	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
PRK12307	426	putative sialic acid transporter; Provisional	99.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.86
TIGR00900	365	2A0121 H+ Antiporter protein.	99.86
PRK03699	394	putative transporter; Provisional	99.86
TIGR00898	505	2A0119 cation transport protein.	99.86
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.86
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.85
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.85
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
PRK10504	471	putative transporter; Provisional	99.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK12382	392	putative transporter; Provisional	99.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.83
PRK05122	399	major facilitator superfamily transporter; Provisi	99.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.83
PRK03893	496	putative sialic acid transporter; Provisional	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK11043	401	putative transporter; Provisional	99.83
PRK10642	490	proline/glycine betaine transporter; Provisional	99.83
KOG2532	466	consensus Permease of the major facilitator superf	99.82
TIGR00895	398	2A0115 benzoate transport.	99.82
PRK10054	395	putative transporter; Provisional	99.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.82
PLN00028	476	nitrate transmembrane transporter; Provisional	99.82
KOG0254	513	consensus Predicted transporter (major facilitator	99.82
PRK10133	438	L-fucose transporter; Provisional	99.81
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.81
PRK09952	438	shikimate transporter; Provisional	99.81
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.81
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.81
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.8
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.8
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.8
PRK03633	381	putative MFS family transporter protein; Provision	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.8
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.79
PRK15075	434	citrate-proton symporter; Provisional	99.79
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.79
KOG0569	485	consensus Permease of the major facilitator superf	99.79
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.79
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.78
PRK09874	408	drug efflux system protein MdtG; Provisional	99.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.77
KOG2615	451	consensus Permease of the major facilitator superf	99.77
TIGR00805	633	oat sodium-independent organic anion transporter.	99.77
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.76
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.76
PRK10489	417	enterobactin exporter EntS; Provisional	99.75
KOG2533	495	consensus Permease of the major facilitator superf	99.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.74
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.74
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.7
TIGR00901	356	2A0125 AmpG-related permease.	99.7
PRK15011	393	sugar efflux transporter B; Provisional	99.7
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.69
PTZ00207	591	hypothetical protein; Provisional	99.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.69
PRK11902	402	ampG muropeptide transporter; Reviewed	99.67
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.67
PRK15011	393	sugar efflux transporter B; Provisional	99.66
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.66
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.66
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.65
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
PRK09874	408	drug efflux system protein MdtG; Provisional	99.64
PRK10489	417	enterobactin exporter EntS; Provisional	99.64
PRK11010	491	ampG muropeptide transporter; Validated	99.62
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.62
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.62
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.61
PRK03893	496	putative sialic acid transporter; Provisional	99.61
PRK12382	392	putative transporter; Provisional	99.6
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.6
PRK03545	390	putative arabinose transporter; Provisional	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.57
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.57
PRK03633	381	putative MFS family transporter protein; Provision	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.54
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.54
PRK03699	394	putative transporter; Provisional	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
TIGR00891	405	2A0112 putative sialic acid transporter.	99.5
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
PRK09952	438	shikimate transporter; Provisional	99.5
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.5
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.5
PRK15075	434	citrate-proton symporter; Provisional	99.49
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.49
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.48
PRK09705	393	cynX putative cyanate transporter; Provisional	99.48
PRK10504	471	putative transporter; Provisional	99.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.47
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.47
PRK11663	434	regulatory protein UhpC; Provisional	99.46
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.46
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.46
PRK11010	491	ampG muropeptide transporter; Validated	99.45
PRK12307	426	putative sialic acid transporter; Provisional	99.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.43
TIGR00900	365	2A0121 H+ Antiporter protein.	99.43
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.42
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.39
PLN00028	476	nitrate transmembrane transporter; Provisional	99.38
TIGR00895	398	2A0115 benzoate transport.	99.38
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.37
PRK11902	402	ampG muropeptide transporter; Reviewed	99.37
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.36
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.35
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.35
TIGR00898	505	2A0119 cation transport protein.	99.35
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.35
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.33
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.32
PRK09669	444	putative symporter YagG; Provisional	99.31
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.31
PRK10054	395	putative transporter; Provisional	99.31
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.3
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.29
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.28
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.26
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.24
PRK10133	438	L-fucose transporter; Provisional	99.24
TIGR00901	356	2A0125 AmpG-related permease.	99.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.22
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.22
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.21
PRK09848	448	glucuronide transporter; Provisional	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.19
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.19
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.18
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.18
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.15
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.14
PF13347	428	MFS_2: MFS/sugar transport protein	99.14
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
PRK11043	401	putative transporter; Provisional	99.14
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.13
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
KOG0569	485	consensus Permease of the major facilitator superf	99.07
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.06
COG0477	338	ProP Permeases of the major facilitator superfamil	99.03
PRK09669	444	putative symporter YagG; Provisional	99.02
PRK10429	473	melibiose:sodium symporter; Provisional	99.01
PF13347	428	MFS_2: MFS/sugar transport protein	99.01
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.98
PRK11462	460	putative transporter; Provisional	98.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.95
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.92
KOG2563	480	consensus Permease of the major facilitator superf	98.91
KOG3762	618	consensus Predicted transporter [General function	98.9
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.83
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.78
PRK09848	448	glucuronide transporter; Provisional	98.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.77
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.75
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.72
PRK11462	460	putative transporter; Provisional	98.71
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.69
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.67
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.67
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.67
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.59
KOG2532	466	consensus Permease of the major facilitator superf	98.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.56
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.53
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.52
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.44
KOG3626	735	consensus Organic anion transporter [Secondary met	98.42
KOG0254	513	consensus Predicted transporter (major facilitator	98.34
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.32
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.27
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.26
PF12832	77	MFS_1_like: MFS_1 like family	98.25
KOG2615	451	consensus Permease of the major facilitator superf	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.13
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.06
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.01
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.94
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.9
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.89
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.71
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.67
KOG2563	480	consensus Permease of the major facilitator superf	97.62
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.54
PTZ00207	591	hypothetical protein; Provisional	97.52
KOG0637	498	consensus Sucrose transporter and related proteins	97.37
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.21
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.15
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.03
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.93
PRK03612	521	spermidine synthase; Provisional	96.5
KOG3762	618	consensus Predicted transporter [General function	96.46
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.05
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.0
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.12
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.44
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.24
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.04
TIGR00805	633	oat sodium-independent organic anion transporter.	93.83
KOG3810	433	consensus Micronutrient transporters (folate trans	93.75
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.44
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.12
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.74
KOG2325	488	consensus Predicted transporter/transmembrane prot	91.94
KOG3880	409	consensus Predicted small molecule transporter inv	91.65
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.19
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.19
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.03
COG3202	509	ATP/ADP translocase [Energy production and convers	89.57
KOG3097	390	consensus Predicted membrane protein [Function unk	89.25
KOG3880	409	consensus Predicted small molecule transporter inv	88.74
KOG0637	498	consensus Sucrose transporter and related proteins	88.13
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	87.1
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	86.11
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	85.86
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	85.43
KOG3810	433	consensus Micronutrient transporters (folate trans	85.38
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.6
KOG3626	735	consensus Organic anion transporter [Secondary met	83.5
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	83.07

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.7e-23  Score=155.61  Aligned_cols=153  Identities=15%  Similarity=0.111  Sum_probs=144.2

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++.+++|.|..+.|+..+.+..+..+++++...++||+.||++++..+.+++++.+.+.+++|++++.++|++.|+..|
T Consensus        37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G  116 (394)
T COG2814          37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG  116 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ..++...+...+..|+++|++++++...+..++.++|.+++.  .+.+.+|||..|++.+..+++..+......|
T Consensus       117 ~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt--~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT--FLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999988  6677889999999998888887776665555

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=6e-23  Score=156.45  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=134.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..++.....+++|++.+++.|++.|++.+.
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  112 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAG  112 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..+....++.|++|+++|++++++++....+|..+++.+++ +..   ..+..+||+.|++.++..++..+...+
T Consensus       113 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       113 FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence            88888899999999999999999999999999999999987 432   124569999999988777665444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=5.2e-23  Score=155.62  Aligned_cols=150  Identities=14%  Similarity=0.101  Sum_probs=134.7

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..+++..+.+++|++.+++.|++.|++.+
T Consensus        33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~  112 (390)
T PRK03545         33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHA  112 (390)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ...+...+++.|++|+|+|++++++++.+.++|..++|.+++  ...+..+||+.|++.++..++..+....
T Consensus       113 ~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~--~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        113 IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR--VIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999987  3335569999999988877665544333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.89  E-value=6.7e-23  Score=154.01  Aligned_cols=152  Identities=14%  Similarity=0.016  Sum_probs=122.9

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++++++|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++.|++.+
T Consensus        15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~   94 (368)
T TIGR00903        15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQP   94 (368)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhH
Confidence            34678899999999999999999999999999999999999998766655554443322333789999999999999998


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      . ........+|++|+|+|++++++.+.+..+|..+++.++.  ...++.+||+.|++.+++.++..+...+..+
T Consensus        95 ~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~--~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        95 F-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL--KIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             H-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6 4556666799999999999999999999999999999988  3334679999999877777665554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=8.5e-25  Score=163.07  Aligned_cols=151  Identities=13%  Similarity=0.141  Sum_probs=139.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +.++++|.++++.|++.+.+.+...+++|++|+++||++||+++..+.+++.++.+...++..+|++.++|.+.|+|.+.
T Consensus        58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs  137 (493)
T KOG1330|consen   58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS  137 (493)
T ss_pred             HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..+..+.+++|.+|.++|+++++++++...+|..+|.+++. +.....  .||+.|...+++.++..++.+++.
T Consensus       138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999988887 333332  399999999999888877766555

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.89  E-value=1e-22  Score=158.44  Aligned_cols=153  Identities=14%  Similarity=0.049  Sum_probs=133.4

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++.+++|.+.++.+|..+.+.++...+.++.|+++||+|||++++.+.++..++++.+.+++|++.++++|+++|++.+
T Consensus        30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~  109 (495)
T PRK14995         30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAA  109 (495)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ...+.....+.+.+ |+++|+++++++.....+|..++|.+++  ...++.+||+.|++.....++..++..+..+
T Consensus       110 ~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg--~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        110 MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG--ILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            88887777776665 6799999999999999999999999998  5556679999999877666555444433333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=3.1e-22  Score=148.60  Aligned_cols=146  Identities=23%  Similarity=0.359  Sum_probs=131.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ...+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+...+++|.+.+++.|++.|++.+.
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  101 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF  101 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence            35678999999999999999999999999999999999999999999999999866655657888999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ..+....++.|++|+|+|++.+++.+....+|..++|.+++  ...+..+||+.|++.++..++..++
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG--FLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhh--hhhhccccccccccccchhhhhhhh
Confidence            99999999999999999999999999999999999999988  5556678999999988888777653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=1.9e-22  Score=152.89  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=131.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++.+++|.++++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.+++|++.+++.|++.|++.+.
T Consensus        45 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  124 (394)
T PRK10213         45 PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGG  124 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHH
Confidence            45678999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ..+....++.|++|+|+|++++++.....++|..++|.+++  ...+.++||+.|++.++..++..
T Consensus       125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~--~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS--FLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998  44456799999998776655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=7.9e-22  Score=149.46  Aligned_cols=142  Identities=16%  Similarity=0.081  Sum_probs=125.7

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++++++|.|.++.++..+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+.+++|++.+++.|++.|++.+
T Consensus        33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~  112 (393)
T PRK09705         33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIG  112 (393)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHH
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASI  149 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~  149 (172)
                      ...+....++.|++| ++|++++++++.+...|..+++.++.  ...++ .+||..+...++..++
T Consensus       113 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~--~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        113 IIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITP--WLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999987 78999999999988888888888877  22233 3799987765555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.87  E-value=5.2e-22  Score=151.34  Aligned_cols=148  Identities=14%  Similarity=0.167  Sum_probs=130.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++.++++.+.++.++..+.+.++..+++++.|+++||+|||++++.+.++..++...+..++|++.++++|+++|++.+.
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~  120 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF  120 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+....++.|.+|+++|++.+++.+....+|..++|.+++  ...++.+||+.|++.++..++..+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~--~l~~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA--ALMHFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            66777788999999999999999999999999999999988  233456899999988877666554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.87  E-value=6.3e-22  Score=149.41  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=132.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|.++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.+++|++.+.+.|++.|++.+.
T Consensus        28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~  107 (382)
T PRK10091         28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGA  107 (382)
T ss_pred             HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+.....+.|++|+++|++.++++..+..+|..++|.+++  ...+..+||+.|.+.++..++..+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        108 FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT--YLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH--HHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999987  444556899999998877665554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.87  E-value=2.2e-22  Score=150.96  Aligned_cols=149  Identities=13%  Similarity=0.045  Sum_probs=133.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|+++.+++.+...++..++.++.|+++||+|||+++..+.++..++.....++++++.+.+.|++.|++.+.
T Consensus        19 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   98 (399)
T TIGR00893        19 MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAP   98 (399)
T ss_pred             HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..+....++.|++|+|+|++.+++.+....+|..++|.+++  ...+..+||+.|.+.++..++..+...+
T Consensus        99 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893        99 FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG--WILIHFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999987  3334568999999887776665554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.87  E-value=4.1e-22  Score=154.25  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=135.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++.+++|.++++.++..+.+.++..++.++.|+++||+|||++++.+.++..++.+.+..++|++.+++.|++.|++.+.
T Consensus        27 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~  106 (485)
T TIGR00711        27 TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGP  106 (485)
T ss_pred             HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      ..+....++.|.+|+++|++++++++....+|..++|.+++  ...++.+||+.|++.....++..+...+.
T Consensus       107 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG--WIIENYHWRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh--HhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988  55567799999998777666555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.87  E-value=3.3e-21  Score=149.13  Aligned_cols=150  Identities=21%  Similarity=0.286  Sum_probs=125.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------------chhHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------------FNIYMLIFGR   76 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~   76 (172)
                      .+++.++++.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+...+.            +.++.+++.|
T Consensus        48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            3558999999999999999999999999999999999999999999988877665542            2256778999


Q ss_pred             HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-----CCCCcchHHHHHhhhHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-----IKGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-----~~~~~~w~~~~~~~~~~~~~~  150 (172)
                      ++.|++.+...+...++++|++|+++|++.+++.+.+..+|..+++.++. +..     ..+.++||+.|++.++..++.
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  207 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF  207 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887765 321     224569999999887777665


Q ss_pred             HHhhhhhc
Q 041620          151 TIGASDWW  158 (172)
Q Consensus       151 ~~~~~~~~  158 (172)
                      .+..++.+
T Consensus       208 ~~~~~~l~  215 (479)
T PRK10077        208 LMLLYFVP  215 (479)
T ss_pred             HHHHHcCC
Confidence            54444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=7.9e-22  Score=149.05  Aligned_cols=146  Identities=20%  Similarity=0.232  Sum_probs=128.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +.++++|.|+++.+++.+...++..+++++.|+++||+|||++++.+.++.+++.+...+.++++.+++.|++.|++.+.
T Consensus        37 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  116 (405)
T TIGR00891        37 EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGG  116 (405)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh
Confidence            35678999999999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..+....++.|++|+++|++++++.+.+..+|..+++.+++ +....+ .+||+.|.+.++..++..+
T Consensus       117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       117 EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALW  183 (405)
T ss_pred             hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987 322211 2599999886655544433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=1.5e-21  Score=149.71  Aligned_cols=145  Identities=15%  Similarity=0.139  Sum_probs=130.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +..+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+....+++++.+.+.|++.|++.+.
T Consensus        48 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~  127 (434)
T PRK11663         48 EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGW  127 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999888999999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..+....++.|++|+++|++++++++.+.++|..++|.+.+  ...+.++||+.|++.++..++..+
T Consensus       128 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~--~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        128 GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG--AIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999887  333456899999987776654443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=7.8e-22  Score=148.34  Aligned_cols=149  Identities=14%  Similarity=0.099  Sum_probs=133.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.....++++.+.+.|++.|++.+.
T Consensus        30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  109 (385)
T TIGR00710        30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA  109 (385)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhH
Confidence            45678999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..+....++.|++|+|+|++.+++.+....+|..++|.+++  ...+..+||..+++.++..++..+...+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       110 GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG--YILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988  3334568999998877766655544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.87  E-value=1.9e-21  Score=148.46  Aligned_cols=138  Identities=17%  Similarity=0.245  Sum_probs=126.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +++++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+..
T Consensus        44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  123 (426)
T PRK12307         44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGE  123 (426)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP  146 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  146 (172)
                      .+....++.|++|+|+|++++++.+.+..+|..+++.+..  ...+..+||+.|++..+.
T Consensus       124 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~--~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        124 YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP--SFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH--HHcccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876  444567999999875544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.86  E-value=1.1e-21  Score=157.49  Aligned_cols=152  Identities=18%  Similarity=0.118  Sum_probs=132.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      ++++++++..+.+++.+.+.++.+++++++|+++||+|||+++++++++.+++.++..++++++.++++|++.|++.+..
T Consensus       193 i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~  272 (742)
T TIGR01299       193 AEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA  272 (742)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C---------CCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I---------KGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~---------~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      .+...+++.|++|+++|++.+++.+.+..+|.++++.++. +.. .         ....+||+.+++.+++.++.++..+
T Consensus       273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988765 221 1         1224799999988887766655544


Q ss_pred             hhc
Q 041620          156 DWW  158 (172)
Q Consensus       156 ~~~  158 (172)
                      +.+
T Consensus       353 ~lP  355 (742)
T TIGR01299       353 FMP  355 (742)
T ss_pred             HcC
Confidence            444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=1.3e-21  Score=146.23  Aligned_cols=148  Identities=11%  Similarity=0.073  Sum_probs=128.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+++|++.+.+.|++.|++.+.
T Consensus        28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  107 (377)
T TIGR00890        28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGI  107 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .++.....+.|++| |+|+++.++.+.+..+|..+++.+..  ...+..+||+.|++.++..++..+...+
T Consensus       108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       108 AYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLIT--SVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888886 67999999999999999877666654  2334568999999888877666554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.86  E-value=2e-21  Score=147.46  Aligned_cols=146  Identities=20%  Similarity=0.215  Sum_probs=129.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ...+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+.+.|++.|++.+.
T Consensus        40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  119 (406)
T PRK11551         40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG  119 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHH
Confidence            34577899999999999999999999999999999999999999999998888888888889999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ..+....++.|++|+|+|++++++.+....+|..+++.++.  ...+..+|+..|++.++..++..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV--LAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876  3445668999998876655544433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.86  E-value=2.5e-21  Score=144.33  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=127.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-----hhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF-----NIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~   83 (172)
                      .+.+.++.+.+++.+...++..+++++.|+++||+|||++++.+.++..++.....+.+     +++.+++.|++.|++.
T Consensus        27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  106 (365)
T TIGR00900        27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQ  106 (365)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999988888777776665     8999999999999999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      +...+...+++.|++|+|+|++.+++.+....+|..++|.+++  ...+..+||+.+++.++..++..+....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       107 AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG--LMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988  3334568999998877766555444333

>PRK03699 putative transporter; Provisional

Probab=99.86  E-value=6e-21  Score=144.64  Aligned_cols=146  Identities=10%  Similarity=0.098  Sum_probs=128.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++++|.|+++.++..+...++..+++++.|++.||+|||+++..+.++.+++.....++++++.+.+.|++.|++.+.
T Consensus        32 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~  111 (394)
T PRK03699         32 PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGI  111 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHh
Confidence            45678999999999999999999999999999999999999999999999999998888899999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ..+....++.|.+|+++|++.++..+....+|..++|.+.+ +.  .+..+||+.|.+.++..++..++
T Consensus       112 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        112 TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL--ARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999988888889889988876 21  23458999999877776655443

>TIGR00898 2A0119 cation transport protein

Probab=99.86  E-value=4e-21  Score=149.69  Aligned_cols=147  Identities=18%  Similarity=0.210  Sum_probs=131.5

Q ss_pred             CCCCCCCCC---hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhh
Q 041620            6 KVSNYSKFD---SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         6 ~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   82 (172)
                      .+.++++++   +.+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+...++++++.+.+.|++.|++
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~  193 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMG  193 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            456788888   89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      .+...+....++.|++|+++|++..++.+.+..+|..++|.++.  ...   +||+.+++.+++.++..+..++.
T Consensus       194 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~---~wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       194 IGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY--FIP---DWRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             ccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhh---HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999876  222   49999999888777665554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.86  E-value=1.4e-21  Score=146.25  Aligned_cols=148  Identities=14%  Similarity=0.092  Sum_probs=130.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+.
T Consensus        20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   99 (379)
T TIGR00881        20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGM   99 (379)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHH-HHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL-LNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+...+++.|++|+|+|++.+++.+....+|..++|. ++.  ...+..+||+.|++.++..++..+...
T Consensus       100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       100 GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF--GIAELYSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999994 544  223345899999887766655444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.86  E-value=2.7e-21  Score=145.33  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=131.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +..+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++...+...++++.+.+.|++.|++.+.
T Consensus        16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~   95 (377)
T PRK11102         16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAA   95 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+....++.|.+|+|+|++.+++.+....+|..++|.+++  ...+..+||+.|++.++..++..+...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG--WLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987  333456899999887776665544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.8e-21  Score=144.16  Aligned_cols=153  Identities=15%  Similarity=0.084  Sum_probs=141.1

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +.+.++.++|.+|.|.+.+.+.+.+.++.++.|.++||.++|+.+.++++++++..++++++++.+.+.++-++.|..+|
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg  132 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQG  132 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH--hhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN--CTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ...|++...+..++|+++||+..++++.+.++|+.+.|.+.  +  ....+.+||..|+..++.+++..+..++..+
T Consensus       133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la--~~~~~~~w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA--FFAFHGGWRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH--HHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999997  5  4445568999999999998888776665553

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.85  E-value=3.2e-21  Score=148.93  Aligned_cols=148  Identities=16%  Similarity=0.066  Sum_probs=129.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +++++++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.....  .+++.+++.|++.|++.+..
T Consensus        69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            3789999999999999999999999999999999999999999999888887776443  56788999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .+....++.|++|+++|++++++.+.+..+|..++|.+.+  ...+. .+||..|++.++..++..+..+...
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~--~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISG--WLCESWGGWPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987  33344 3899999998887766655444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.85  E-value=1.5e-20  Score=146.56  Aligned_cols=148  Identities=21%  Similarity=0.246  Sum_probs=126.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch------hHHHHHHHHHHhhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN------IYMLIFGRLLLGVGIG   84 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~   84 (172)
                      .+.++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++..+..++++      ++.+++.|++.|++.+
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence            4566778899999999999999999999999999999999999999988887777654      6789999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C-------------------CCCcchHHHHHhh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I-------------------KGGWGWRISLAMA  143 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~-------------------~~~~~w~~~~~~~  143 (172)
                      ...+..+.+++|++|+++|++.+++.+....+|..+++.++. +.. .                   ...++||+.+.+.
T Consensus       131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~  210 (502)
T TIGR00887       131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG  210 (502)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence            999999999999999999999999999999999999888875 321 1                   1124799999988


Q ss_pred             hHHHHHHHHhhhhhc
Q 041620          144 AAPASILTIGASDWW  158 (172)
Q Consensus       144 ~~~~~~~~~~~~~~~  158 (172)
                      +++.++..+...+.+
T Consensus       211 ~ip~~i~~~~~~~lp  225 (502)
T TIGR00887       211 AVPALLALYFRLTIP  225 (502)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888776665554444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=6.2e-21  Score=144.32  Aligned_cols=148  Identities=19%  Similarity=0.158  Sum_probs=130.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +..+++|.|+++.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.......++.+.+.+.|++.|++.+.
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~  107 (392)
T PRK10473         28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC  107 (392)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhH
Confidence            45677899999999999999999999999999999999999999999999999988888889999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+....++.|.+|+++|++..++.+....++..++|.+++  ...+..+|++.+++.+...++..+...
T Consensus       108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~--~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH--LIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999987  333456899999888776665554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.85  E-value=4.3e-21  Score=148.39  Aligned_cols=151  Identities=11%  Similarity=-0.086  Sum_probs=125.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLG   80 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g   80 (172)
                      .+++++|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++..+....     +++++.+++.|++.|
T Consensus        54 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  133 (467)
T PRK09556         54 DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSG  133 (467)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999998888777766655443     589999999999999


Q ss_pred             hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ++.+...+....++.|++|+++|++++++++.+.++|..+++.+.. ........+|+..|.+.++..++..+..++
T Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        134 FFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             HHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988875 222111125888888777766655444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=2.6e-20  Score=139.41  Aligned_cols=135  Identities=13%  Similarity=0.141  Sum_probs=115.8

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~   85 (172)
                      +++++|.|+++.+++.+...++..+++++.|+++||+|||+.++.+.++..++.+.+.+++ +++.+.+.|++.|++.+.
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~  107 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS  107 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence            5688999999999999999999999999999999999999999999999999999888888 999999999999998664


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C------CCCcchHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I------KGGWGWRISLAM  142 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~------~~~~~w~~~~~~  142 (172)
                       ......++.|++|+|+|+++++++....++|..+++.++. +.. .      .++.+||+.+++
T Consensus       108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence             5667889999999999999999998777777777776665 221 1      123479998843

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=1.8e-20  Score=144.93  Aligned_cols=148  Identities=15%  Similarity=0.073  Sum_probs=130.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||++++.+..+..++.+.+.+.++.+.+++.|++.|++.+..
T Consensus        36 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~  115 (471)
T PRK10504         36 MAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMM  115 (471)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHH
Confidence            45678999999999999999999999999999999999999999998888888888888899999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .+....++.|.+|+++|+++.++.+...++|..++|.+++  ...++.+||+.|.+......+..+....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g--~l~~~~gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        116 VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG--LLVEYASWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988  3334568999998876665555444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.84  E-value=8.3e-20  Score=140.00  Aligned_cols=138  Identities=23%  Similarity=0.340  Sum_probs=111.1

Q ss_pred             CChhHHHH---HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHHhh
Q 041620           13 FDSQLLTT---FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLLGV   81 (172)
Q Consensus        13 ~s~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~   81 (172)
                      .+..+.+.   ..+...++..+++++.|+++||+|||+++..+.+++.++.+.+++++++.        .+++.|+++|+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~  136 (432)
T PRK10406         57 NTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL  136 (432)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh
Confidence            44444333   33444566669999999999999999999999999999999988887753        58899999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHHHHH
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~~~~  150 (172)
                      +.|...+...++++|++|+++|++..++.+.+...|..+++.+.. +...     .+.+|||+.|++.+++.++.
T Consensus       137 g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        137 SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888888877776654 2221     12569999999877766554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=2.2e-20  Score=141.96  Aligned_cols=148  Identities=17%  Similarity=0.166  Sum_probs=129.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ...+++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.....++......+++++.+++.|++.|++.+.
T Consensus        38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  117 (406)
T PRK15402         38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCF  117 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhh
Confidence            34578999999999999999999999999999999999999999999999999988888889999999999999999988


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+.....+.|.+|+++|.+..++.+....++..++|.+++  ...++.+||+.+++.++..++..+...
T Consensus       118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        118 IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA--ALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999988888888999999987  333456899999887777666554433

>PRK12382 putative transporter; Provisional

Probab=99.84  E-value=6.5e-20  Score=138.74  Aligned_cols=139  Identities=17%  Similarity=0.174  Sum_probs=117.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hc-----cchhHHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VC-----AFNIYMLIFGRLL   78 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~l   78 (172)
                      .++++|.|+++.+++.+.+.++..+++++.|+++||+||||+++.+.+...++....   ..     .++++.+++.|++
T Consensus        42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  121 (392)
T PRK12382         42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI  121 (392)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999887766554322   11     2578889999999


Q ss_pred             HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHH
Q 041620           79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPA  147 (172)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  147 (172)
                      .|++.+...+....++.|..|+|+|++++++++.+...|..++|.+++  ...+..+|+..+.+..+..
T Consensus       122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~--~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL--LLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHH
Confidence            999999888888889999999999999999999999999999999987  3334568998776654443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.83  E-value=1e-19  Score=139.86  Aligned_cols=146  Identities=33%  Similarity=0.574  Sum_probs=123.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhhcc
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++..+....   .+++.+++.|++.|++.+...+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  146 (481)
T TIGR00879        67 SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASA  146 (481)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHh
Confidence            3668999999999999999999999999999999999999999998888877543   4556899999999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH-hhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN-CTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      ....++.|++|+++|++++++++....+|..+++.++ ......+..+||+.|++.++..++..+...+.
T Consensus       147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l  216 (481)
T TIGR00879       147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998 11144455699999998666655554443333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.83  E-value=3.9e-20  Score=140.22  Aligned_cols=141  Identities=20%  Similarity=0.171  Sum_probs=120.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--------chhHHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--------FNIYMLIFGRLL   78 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l   78 (172)
                      .++++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++...+.++        .+++.+++.|++
T Consensus        42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  121 (399)
T PRK05122         42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL  121 (399)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999998887765544332        256788999999


Q ss_pred             HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHH
Q 041620           79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASI  149 (172)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  149 (172)
                      .|++.+...+....++.|..|+|+|++++++++.....|..++|.+++  ...+..+|+..+++..+..++
T Consensus       122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV--LLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987  333456899988776655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.83  E-value=2.9e-20  Score=140.73  Aligned_cols=145  Identities=17%  Similarity=0.261  Sum_probs=128.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++.+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+.....++++.+++.|++.|++.+.
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  112 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV  112 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhH
Confidence            45678999999999999999999999999999999999999999999999999888888889999999999999999988


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..+....+..|.+++++|+++++..+.+..++..++|.+++  ...+..+||+.|++.++..++..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        113 GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG--LLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHHHHHHH
Confidence            77888888899999999999999999999999999999988  333456899999987766554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.83  E-value=3.9e-20  Score=143.79  Aligned_cols=140  Identities=21%  Similarity=0.304  Sum_probs=127.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +.+++|.|+.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...+.++++.+.+.|++.|++.+..
T Consensus        46 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  125 (496)
T PRK03893         46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGE  125 (496)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHH
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPAS  148 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  148 (172)
                      .+....++.|.+|+|+|++.+++.+....+|..++|.+.+  ...+..+||+.|.+..+..+
T Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        126 YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS--LVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987  44456799999987544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=5.4e-20  Score=140.17  Aligned_cols=150  Identities=14%  Similarity=0.097  Sum_probs=128.9

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGV   81 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~   81 (172)
                      ++.++++|.|+.+.+++.+...++..+++++.|++.||+|||+++..+.++.+++.+....   .++++.+.+.|++.|+
T Consensus        27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~  106 (410)
T TIGR00885        27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA  106 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence            3457889999999999999999999999999999999999999999999999998877543   3689999999999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC-----------------------CCcchH
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK-----------------------GGWGWR  137 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-----------------------~~~~w~  137 (172)
                      +.+...+..+.++.+..|+++|++.+++.+...++|..++|.+.. +....                       +..+||
T Consensus       107 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  186 (410)
T TIGR00885       107 GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQ  186 (410)
T ss_pred             hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987 42111                       123699


Q ss_pred             HHHHhhhHHHHHHHHhh
Q 041620          138 ISLAMAAAPASILTIGA  154 (172)
Q Consensus       138 ~~~~~~~~~~~~~~~~~  154 (172)
                      ++|++.+...++..+..
T Consensus       187 ~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       187 TPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988877666554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.83  E-value=3.8e-20  Score=140.43  Aligned_cols=149  Identities=16%  Similarity=0.131  Sum_probs=129.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++++|.++++.++..+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+++.|++.|++.+.
T Consensus        31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  110 (401)
T PRK11043         31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS  110 (401)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH
Confidence            35678899999999999999999999999999999999999999999999998888888889999999999999999888


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..+....++.|.+|+++|++..+..+....++..++|.+++  ...+..+||+.|++.++..++..+...+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        111 AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA--WLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            77777888999999999988888888888899999999988  3345568999998887776665554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.83  E-value=1.2e-19  Score=141.26  Aligned_cols=129  Identities=16%  Similarity=0.224  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHH--------HHHHHHHHhhhhhhhccchhhh
Q 041620           22 ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYM--------LIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        22 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      .+...++..+++++.|+++||+|||+++..+.++++++.+++++++|++.        ++++|+++|++.|...+....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            36667899999999999999999999999999999999999999998864        7889999999999999999999


Q ss_pred             hhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh-cC----CCCcchHHHHHhhhHHHHHH
Q 041620           94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KI----KGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~----~~~~~w~~~~~~~~~~~~~~  150 (172)
                      ++|++|+|+|++..++.+.+..+|..+++.+.. +. ..    ..++|||+.|++.+++.++.
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence            999999999999999998888888887776654 21 11    13579999999876655443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.82  E-value=6e-20  Score=141.01  Aligned_cols=149  Identities=18%  Similarity=0.214  Sum_probs=134.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~   85 (172)
                      +.+++.|+++.+++.+.+..|+++++++.|+++||+|-|+++..+.++.++..++...+  .+++.+++.|+++|++.+.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            56899999999999999999999999999999999999999999999999999988876  4566889999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .++......++|.|+++|++..++...+..+|.+++-.+++  .+.+. .||+..|++.++.+++..++.++..
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg--~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG--LLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988887  33344 7999999999999888776655544

>TIGR00895 2A0115 benzoate transport

Probab=99.82  E-value=4.6e-20  Score=138.95  Aligned_cols=145  Identities=22%  Similarity=0.243  Sum_probs=128.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ...+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.....+.++++.+++.+++.|++.+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  121 (398)
T TIGR00895        42 AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG  121 (398)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccccc
Confidence            34577899999999999999999999999999999999999999999999988888888889999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..+...+++.|.+|+++|++.+++.+....+|..+++.+.+  ...+..+|+..+++.++...+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG--WLIPVFGWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH--HHhhcccceeehhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999987  444556899998887554444433

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=7.7e-20  Score=138.74  Aligned_cols=144  Identities=12%  Similarity=0.054  Sum_probs=126.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .++++|.|+++.++..+...++..+++++.|+++||+|||+++..+.++..++.....+.++++.+++.+.+.|.+.+..
T Consensus        34 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  113 (395)
T PRK10054         34 LSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF  113 (395)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999988888888888899998888898888887777


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+....+..|..|+++|++.+++.+...++|..++|.+++ +.   + .+|+..|.+.++..++..+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---M-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hccCcHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999988 43   2 479999998777666554433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.82  E-value=1.2e-19  Score=137.86  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=128.5

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .+++.|.|+.+.|+..+...+...+.+++.|+++||+|||+++..+.++..++.+.+...++++.+++.|++.|++.+..
T Consensus        37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~  116 (400)
T PRK11646         37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF  116 (400)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999998888899999999999999999888


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      .+...+++.|.+|+|+|++++++.+...++|..++|.+++ +.    .++|++.|++.+...++..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999998 43    358999999877666554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.82  E-value=1.4e-19  Score=140.27  Aligned_cols=151  Identities=15%  Similarity=0.020  Sum_probs=123.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+++++|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++..+..++++++.+++.|++.|++.+.
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~  140 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLAT  140 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999998888888889999999999999998876


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc------CCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK------IKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      .. ....+++|++|+++|++++++.+...++|..+++.+.. +..      ..+..+||+.|++.+++.++..+...+.
T Consensus       141 ~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        141 FV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             hH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            43 45667899999999999999988777777777665554 211      1123589999999888777665554443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=2.6e-19  Score=140.03  Aligned_cols=141  Identities=35%  Similarity=0.525  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS   95 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~   95 (172)
                      ++.+++.+...++..+++++.|+++|++|||+.++.+.+...++.++.+++.|.+++.++|++.|+|.|......+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            56699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           96 EMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        96 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      |..|++.||...+..+....+|..++..++. .... . ++||..+.+..+++++..+..++.+
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~p  230 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLP  230 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999866655 3222 1 5899999999999888877755544

>PRK10133 L-fucose transporter; Provisional

Probab=99.81  E-value=3.3e-19  Score=136.96  Aligned_cols=121  Identities=14%  Similarity=0.166  Sum_probs=111.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchhHHHHHHHHHHhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~   82 (172)
                      +.++++|.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+++   ..+++++.+.++|++.|++
T Consensus        51 ~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g  130 (438)
T PRK10133         51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG  130 (438)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999998775   4578999999999999999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+...+..+.++.|..|+++|...+++.+..+.+|..++|.++.
T Consensus       131 ~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877777777899999999999999998876

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.81  E-value=3.8e-19  Score=138.13  Aligned_cols=137  Identities=18%  Similarity=0.143  Sum_probs=119.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYM-LIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~   85 (172)
                      ++++|.++++..++.+.+.....+..++.|+++|| +||||+++.+.+++.++.+.+.++.+... +.+.|.++|+|.|.
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~  121 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGL  121 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence            45689999999999999888888888999999999 99999999999999999998888765443 55789999999999


Q ss_pred             hccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620           86 GNQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP  146 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  146 (172)
                      ..+...+++.|.+|+++  |..+.++++.+.++|..++|.+++  ...++.|||+.|++..+.
T Consensus       122 ~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g--~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        122 FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP--VIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH--HHHHhhChHHHHHHHHHH
Confidence            99999999999998774  577899999999999999999988  444566899999886553

>PRK09952 shikimate transporter; Provisional

Probab=99.81  E-value=6e-19  Score=135.53  Aligned_cols=126  Identities=20%  Similarity=0.260  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHHhhhhhhhccchhhhhh
Q 041620           24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLLGVGIGFGNQSVPLYLS   95 (172)
Q Consensus        24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~   95 (172)
                      ...++..+++++.|+++||+|||+++..+.+++++++++++++++++        .++++|+++|++.+...+....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            34466778999999999999999999999999999999999998876        5888999999999999999999999


Q ss_pred             ccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-C----CCcchHHHHHhhhHHHHH
Q 041620           96 EMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-K----GGWGWRISLAMAAAPASI  149 (172)
Q Consensus        96 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-~----~~~~w~~~~~~~~~~~~~  149 (172)
                      |++|+|+|++..+..+.+..+|..+++.+.. +... .    .+++||..|++.+++.++
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            9999999999999999888898888876654 2211 1    257999999987766544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.81  E-value=5.8e-19  Score=132.43  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=119.8

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILI-GGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .++++|.|+++.+++.+...+...+.+++.|+++||+||||.++. +.....++...+..+++++.+++.|++.|.+.+.
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  103 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST  103 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence            467899999999999999999999999999999999999887654 4555566667777889999999999999888777


Q ss_pred             hccchhhhhhccCCccccccc--hhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTF--NIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..+....+..|..|++.|++.  .+......++|..++|.+++  ...+..+||+.|++.+...++..+...+
T Consensus       104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~--~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF--WLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            788888888898887777654  57777788899999999988  3334568999999987776655544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.81  E-value=9.6e-19  Score=135.58  Aligned_cols=139  Identities=16%  Similarity=0.207  Sum_probs=124.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      +|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+...++++.+.+.+.+.+.|++.+...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence            89999999999999999999999999999999 89999999999999999988888888888889999999999999999


Q ss_pred             hhhhhhccCCccc---cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           90 VPLYLSEMTTPKY---RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        90 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ..++++|++|+++   |+++.++++...++|..++|.+++  ...++.+|++.|.+.++..++..
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g--~l~~~~g~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG--VIAENYGYHVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHH
Confidence            9999999998764   888999999999999999999988  44455689999988776544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.80  E-value=5.4e-19  Score=130.79  Aligned_cols=144  Identities=26%  Similarity=0.358  Sum_probs=129.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      .++.|.++++.++..+...++..+++++.|+++||+|||+.+..+..+..++.......++++.+.+.|++.|++.+...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  105 (352)
T cd06174          26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALY  105 (352)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccccccc
Confidence            45678999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      +....++.|.+|+|+|++.+++.+....+|..++|.+++  ...+..+|++.+++.++..++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG--LLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988  3334457999998877766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.80  E-value=5.9e-19  Score=138.22  Aligned_cols=140  Identities=21%  Similarity=0.179  Sum_probs=123.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +..+.+.....+..+++.+|..+|++++|+++||+|||++++.++++..++....++++|++.+.+.|++.|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            55667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ....++.|+.++++|+.+.++ ......++.+++..++  ....  +||+.+++..++..+.++.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a--~~~~--~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA--YITR--DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH--HHHh--hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 5556666666666655  2222  8999999998888877665

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.80  E-value=4.1e-19  Score=136.88  Aligned_cols=145  Identities=18%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVG   82 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~   82 (172)
                      .+++ |.|+++.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+.    .+++.+++.|++.|++
T Consensus        55 l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~  133 (452)
T PRK11273         55 LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF  133 (452)
T ss_pred             HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence            3455 9999999999999999999999999999999999999999999988888777664    3677888999999999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHH-HHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLL-SANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      .+...+.....+.|++|+|+|++++++++.+..+|.. .+|.+.. ...   ..+||+.|++.++..++..++..
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        134 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888899999999999999999999988864 4555433 211   23899999987776665544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.80  E-value=8.8e-19  Score=132.25  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=112.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ...+++|.|+++.|++.+.+.++..+++++.|+++||+|||+.+..+.++..++......++|++.+.+.|++.|++.+.
T Consensus        31 ~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  110 (381)
T PRK03633         31 LWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAM  110 (381)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999998888899999999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..+.....+.+..++++|+++++.++...++|..++|.+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  151 (381)
T PRK03633        111 IWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS  151 (381)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88887778888999999999999999999999999999987

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=8.1e-19  Score=134.75  Aligned_cols=145  Identities=20%  Similarity=0.076  Sum_probs=122.7

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhhhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+.....    ++++.+.+.|++.|++.+..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            59999999999999999999999999999999999999999988888887766553    46777888999999999988


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      ++.....+.|++|+++|++++++++....+|..+++.+.+ ..  .+..+||..|++.++..++..+...+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM--AWFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8888899999999999999999999999999998887765 21  123489999999887776655444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.80  E-value=6.1e-19  Score=133.92  Aligned_cols=149  Identities=11%  Similarity=0.076  Sum_probs=129.2

Q ss_pred             CCCCCCCCChhH-HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            6 KVSNYSKFDSQL-LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         6 ~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      .+.+++|+|+++ .|.+.+.+..++.+..++.|+++||+|.|+++..+.+.+.+...+.++++++..+.+.|++.|++.+
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA  130 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMA  130 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHH---hhhHHHHHHHHhhhhhc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLA---MAAAPASILTIGASDWW  158 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~  158 (172)
                      ... +...++.+++|+++|+++.++.+.+..+|.+++++++.  . ...+|||....   +......+..+..++++
T Consensus       131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q--l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ--L-LVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999 99999999999999999999999999999999999987  2 22457776554   33333334444445555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.1e-19  Score=132.23  Aligned_cols=153  Identities=14%  Similarity=0.069  Sum_probs=139.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +..++.+-+++++|++.....+.+.+.+++.|.+.||+|+|..++++.+.+..+.+++++.+++++++++|.++|+|.+.
T Consensus        96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence            33466778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620           86 GNQSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYR  160 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  160 (172)
                      ..+...++++|.+|+++ |++++|+...+.++|..++|..++  .+.+..|.+.+|.+.++++++-..+.++...+
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGG--ilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGG--ILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCccc--chHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            99999999999999766 799999999999999999999999  44456689999999999988877776666543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.79  E-value=8.9e-19  Score=134.39  Aligned_cols=140  Identities=19%  Similarity=0.385  Sum_probs=111.8

Q ss_pred             CCCCCCCCChhHHHHHH-HHH-----HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------H
Q 041620            6 KVSNYSKFDSQLLTTFI-SSL-----YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------M   71 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~   71 (172)
                      .++++++.++.+.+... +..     .++..+++++.|+++||+|||+.++.+.++..++.+.+.++++++        .
T Consensus        40 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  119 (434)
T PRK15075         40 AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLL  119 (434)
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            34567787776654432 222     222347889999999999999999999999999999999998876        4


Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C----CCCcchHHHHHhhhH
Q 041620           72 LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I----KGGWGWRISLAMAAA  145 (172)
Q Consensus        72 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~----~~~~~w~~~~~~~~~  145 (172)
                      +++.|++.|++.+...+....+++|++|+|+|++.+++.+...++|..+++.++. +.. .    .+.++||+.|++..+
T Consensus       120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            6889999999999988888999999999999999999998888888888777776 321 1    245799999987543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.79  E-value=2.7e-19  Score=138.02  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=124.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHH-HHHHHhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIF-GRLLLGVGIG   84 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~   84 (172)
                      ++++++|.+.++.++..+.+.++..++.++.|+++||+|||++++.+.++..++.+.+.++++++.+++ .|++.|++.+
T Consensus        44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~  123 (455)
T TIGR00892        44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLA  123 (455)
T ss_pred             HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcch
Confidence            345789999999999999999999999999999999999999999999999999888888889888765 4689999998


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ...+....++.++++ ++|+++.++.+.+..+|..++|.+++  .+.+.++||+.|++.++..++..+.
T Consensus       124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~--~l~~~~gwr~~f~~~~~~~~~~~v~  189 (455)
T TIGR00892       124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQ--YLFESFGWRGSFLILGGLLLHCCVC  189 (455)
T ss_pred             hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHH
Confidence            766677788889885 78999999999999999999999887  3334568999999988776655443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.1e-18  Score=131.89  Aligned_cols=141  Identities=24%  Similarity=0.387  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFGNQSVPLYL   94 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~   94 (172)
                      .+.+.+++.+|+++|+++.++++||+|||..+..+.++..++..+..++   +++++++++|++.|+..+......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4557788889999999999999999999999999998888877766654   7899999999999999999999999999


Q ss_pred             hccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           95 SEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        95 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .|..|++.||....+.+.+..+|..++..++.-..+.+...|++.+....+++++..+...+.+
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998777522344556799999999999988888777777

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.79  E-value=1e-18  Score=132.54  Aligned_cols=134  Identities=12%  Similarity=0.035  Sum_probs=115.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      .++++.++.+.+++.+.+.++..+..++.|+++||+|||++++.+.++..++.+.+.+..+.   ++.|+++|++.+...
T Consensus        30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~  106 (393)
T PRK11195         30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYS  106 (393)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999998887776665553   678999999999999


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS  148 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~  148 (172)
                      +...+++.|++|+|+|++++++.+....+|..++|.+++ +..   . .|+..+.+.+...+
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~---~-~~~~~~~i~~~~~~  164 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD---P-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998 432   1 36666666554433

>TIGR00897 2A0118 polyol permease family

Probab=99.79  E-value=2.3e-18  Score=130.91  Aligned_cols=132  Identities=14%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---c-cchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---C-AFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++|.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+.+.   . .++++.+.+.|++.|++.+
T Consensus        41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~  120 (402)
T TIGR00897        41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP  120 (402)
T ss_pred             HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence            56899999999999999999999999999999999999999999988888765442   3 2578888899999999988


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHH-HHHHHHHhhhcCCCCcchHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGL-LSANLLNCTQKIKGGWGWRISLAM  142 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~w~~~~~~  142 (172)
                      ...+.....+.|.+|+|+|++++|+++...++|. .++|.+++  ...+..||+..++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~--~l~~~~g~~~~~~~  177 (402)
T TIGR00897       121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS--YAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccchHHHHHH
Confidence            8777778888999999999999999999999996 57888876  33344565544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=2e-18  Score=129.10  Aligned_cols=140  Identities=19%  Similarity=0.201  Sum_probs=118.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+.. ..++.+.+++.|++.|++.+.
T Consensus        25 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~  103 (355)
T TIGR00896        25 QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAI  103 (355)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999988888777766 678888999999999999998


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS  148 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~  148 (172)
                      ..+..+..+.|.+| ++|++++++++...++|..+++.+.+ +.... ..+||..|...+...+
T Consensus       104 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       104 INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPAL  165 (355)
T ss_pred             HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence            88888888888886 68999999999999999999998877 32111 1249998877655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.78  E-value=2.1e-21  Score=149.24  Aligned_cols=145  Identities=34%  Similarity=0.558  Sum_probs=128.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc---hhHHHHHHHHHHhhhhhhhccch
Q 041620           14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF---NIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      ++.+.++..+...+|..+|+++.|+++||+|||+.++.+.++..++.++..+++   |++.+.++|++.|++.|...+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456788999999999999999999999999999999999999999999999998   99999999999999999999999


Q ss_pred             hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..++.|..|+++|++..++.+.+..+|..++..+.. .....+..+||..+....++.++..+...+.+
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~p  192 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLP  192 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999888887765 32333345699999998888876665555555

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.78  E-value=2.1e-18  Score=130.94  Aligned_cols=145  Identities=16%  Similarity=0.083  Sum_probs=120.9

Q ss_pred             CCCCCChhH-----HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQL-----LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   83 (172)
                      +++|.+..+     .+++.+...++..+++++.|+++||+|||+++..+.+...++.......++++.+++.|++.|++.
T Consensus        42 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  121 (408)
T PRK09874         42 EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG  121 (408)
T ss_pred             HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            456666543     488888999999999999999999999999999999998888888888899999999999999986


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      + ..+....++.|..|+++|++++++.+....+|..++|.+++  ...+..+||..|++.++..++..+...+
T Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        122 G-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG--LLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             h-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            5 45667788899999999999999999999999999999988  3334568999998887766655444333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.77  E-value=6.1e-18  Score=129.52  Aligned_cols=148  Identities=14%  Similarity=-0.029  Sum_probs=120.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~   83 (172)
                      +++|+|++|.+++.+...+++.++.++.|++.||+|+|+++..+.++..+..+...++     ++++.+++.|++.|++ 
T Consensus        63 ~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-  141 (462)
T PRK15034         63 IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-  141 (462)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence            3799999999999999999999999999999999999999999999999888888765     7999999999999998 


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh------c---------CCCCcchHHHHHhhhHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ------K---------IKGGWGWRISLAMAAAPA  147 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~------~---------~~~~~~w~~~~~~~~~~~  147 (172)
                      +..++.....+++++|+|+||++++++....++|..+++++.. +.      .         ..+..+||...++..+..
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            6688899999999999999999999996666666655544432 11      0         012345888888777776


Q ss_pred             HHHHHhhhhh
Q 041620          148 SILTIGASDW  157 (172)
Q Consensus       148 ~~~~~~~~~~  157 (172)
                      ++..+..++.
T Consensus       222 iv~~i~~~~~  231 (462)
T PRK15034        222 AIATIAAWSG  231 (462)
T ss_pred             HHHHHHHHHh
Confidence            6655554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=2.6e-18  Score=125.95  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=108.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      ..+.+....|.+.+.+.+.+.+.++.+|.++||+|||++++.+++..++...+.+.++|+..+.++|++.|+..|- .+.
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v  140 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSV  140 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHH
Confidence            3445777889999999999999999999999999999999999999999999999999996666679999999874 667


Q ss_pred             hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK  129 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~  129 (172)
                      ..++++|..++|+|+.+++..+..+++|.++||++++ +..
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            8899999999999999999999999999999999999 543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.77  E-value=5.2e-19  Score=140.98  Aligned_cols=154  Identities=19%  Similarity=0.142  Sum_probs=129.4

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-----------------
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF-----------------   67 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-----------------   67 (172)
                      +.++++++++.++.|++.+.+.+++.++.++.+++.||+|||+.+.++.++++++++++++.+                 
T Consensus        57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~  136 (633)
T TIGR00805        57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN  136 (633)
T ss_pred             hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence            457889999999999999999999999999999999999999999999999999988776542                 


Q ss_pred             ----------------------------------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHH
Q 041620           68 ----------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC  113 (172)
Q Consensus        68 ----------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  113 (172)
                                                        .+..++++|+++|+|.+..++...+++.|++|+++|++..++++..
T Consensus       137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence                                              2456778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-hhcCC-CC-----------------c-chHHHHHhhhHHHHHHHHhhhhhc
Q 041620          114 AAIGLLSANLLNC-TQKIK-GG-----------------W-GWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus       114 ~~~g~~~~~~~~~-~~~~~-~~-----------------~-~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..+|..+++++++ +.... +.                 . +|+..|++.+++.++..+..++++
T Consensus       217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999988 43221 10                 1 377788887777766655444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.76  E-value=2.8e-18  Score=111.36  Aligned_cols=132  Identities=23%  Similarity=0.278  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccc
Q 041620           23 SSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKY  102 (172)
Q Consensus        23 ~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  102 (172)
                      +...++..+++++.|++.||+|||+.+..+.....++.+.....++.+...+.+++.|++.+...+....++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34567888999999999999999999999998888888887778899999999999999999999999999999999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620          103 RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus       103 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      |++.+++.+....+|..++|.+.+  ...+..+|++.+.+.....++..+...+
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGG--VLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHH--HHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999988  3335568999988877766655544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.76  E-value=2.3e-17  Score=124.08  Aligned_cols=139  Identities=24%  Similarity=0.345  Sum_probs=111.4

Q ss_pred             CChhHHHHHHHHH-----HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHH
Q 041620           13 FDSQLLTTFISSL-----YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLL   79 (172)
Q Consensus        13 ~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~   79 (172)
                      .++++.+...+..     .++..+++++.|+++||+|||+++..+.++..++.+.+.++++++        .+++.|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            4455555544432     234457899999999999999999999999999999888887764        478899999


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHHHHHH
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      |++.+...+....++.|++|+|+|++..+..+.+..+|..+++.+.. +...     .+.++||+.+.+.++..++..
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988875 3221     134689999988766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.75  E-value=3.2e-18  Score=130.63  Aligned_cols=146  Identities=11%  Similarity=-0.037  Sum_probs=120.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~   83 (172)
                      ++.+.++.+.+++.+...++..+++++.|+++||+|||+++..+..+.+++.....     ..++++.+.+.|++.|++.
T Consensus        45 ~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  124 (417)
T PRK10489         45 QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFG  124 (417)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999998888777666554432     2467888889999999999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      +...+.....+.|..|+++|+++.++.+....+|..++|.+++  ...+..+|++.+++.++..++..+....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g--~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        125 SLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG--LLIAAGGVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            8888888999999999999999999999999999999999988  2223457899988877666555444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1e-17  Score=129.31  Aligned_cols=154  Identities=18%  Similarity=0.137  Sum_probs=136.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .+++.+....+.+.+.+++.++++++.++++.+.||++..+.+....+.+.+..++....+|++.+++.|+++|+.++..
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~  151 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG  151 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence            45788899999999999999999999999999999999888888888888777766666899999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC---CCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI---KGGWGWRISLAMAAAPASILTIGASDWWYR  160 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  160 (172)
                      +|....++..++.+++|++.+++++...++|.+++++++. +..+   ....||||.|++.+++.++..+..++..|.
T Consensus       152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            9999999999999999999999999999999999999988 4322   234689999999999988887777665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.74  E-value=6.9e-17  Score=124.86  Aligned_cols=142  Identities=14%  Similarity=0.216  Sum_probs=113.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++|+++.+.+.+.+.+.....++.++.|+++||+ ||||++.++.++..++.+.+...+ +...+.+...+..++.|.
T Consensus        37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~  116 (493)
T PRK15462         37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL  116 (493)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence            345799999999999999999999999999999999 999999999999988877665432 223344444455566677


Q ss_pred             hccchhhhhhccCCcc--ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPK--YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ..+...+++.|.+|++  +|.++.++++...++|+.++|.+.+  ...++.||++.|.+.++..++..
T Consensus       117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g--~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG--YAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH--HHHhhhChHHHHHHHHHHHHHHH
Confidence            6777888999999876  6999999999999999999999988  44456689999988766444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.74  E-value=5.6e-17  Score=126.48  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=115.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++|.++++.++..+.+........++.|+++|| +|||+++..+.++..++...+.+++ +.+.+.+.+.+.|++.|.
T Consensus        49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~  128 (500)
T PRK09584         49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL  128 (500)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence            46789999998888877665656666789999999 5999999999999999888887764 556677889999999998


Q ss_pred             hccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ..+...+++.|++|+++  |..+.++++.+.++|..++|.+++  ...++.|||+.|.+.++...+..
T Consensus       129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g--~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP--WLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH--HHHHhhCHHHHHHHHHHHHHHHH
Confidence            88888899999998654  456788889999999999999998  44456689999998765444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.72  E-value=4.2e-17  Score=121.07  Aligned_cols=150  Identities=15%  Similarity=0.058  Sum_probs=123.5

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhh
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGV   81 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~   81 (172)
                      +.+++++++|++|.+++.++..+...+..++.|.+.||+|.|+....+.++..+-++...++   ++++.+++++.+.|+
T Consensus        38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~  117 (417)
T COG2223          38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL  117 (417)
T ss_pred             hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence            35678999999999999999999999999999999999999999999999999988888876   445699999999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc---hHHHHHhhhHHHHHHHHhhhhhc
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG---WRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +.+ .+.....++++++|||++|.++|++. ..|+|..+..+++.  ......+   |+....+..+..++..+...+..
T Consensus       118 ~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P--~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         118 AGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP--LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             ccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            865 58888999999999999999999998 77777766666655  1111235   88888887777666555544444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.70  E-value=3.1e-16  Score=119.89  Aligned_cols=149  Identities=16%  Similarity=0.186  Sum_probs=119.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-c---hhHHHHHHHHHHhhhhhhhcc
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-F---NIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      .+.++.+...+...++.+++.++.|+++||+|||+++..+.++..+........ +   +.+.+.+.+++.|++.+...+
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~  327 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI  327 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            344677888888899999999999999999999999999999888876555543 2   245667789999999988888


Q ss_pred             chhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHh-hhcCCCC---cchHHHHHhhhHHHHHHHHhhhhhccch
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNC-TQKIKGG---WGWRISLAMAAAPASILTIGASDWWYRY  161 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~-~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~  161 (172)
                      ....++.|.+|+++|++.+++.+ ....+|..++|.+++ +....+.   +||+..|.+.++..++..++..++.++.
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            88999999999999999999997 678899999999998 4333222   4799999888777776666555555433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.70  E-value=3.5e-16  Score=116.97  Aligned_cols=147  Identities=12%  Similarity=-0.014  Sum_probs=112.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHH-HHHHHHHHHhhhhhhcc---chhHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVSI-LIGGVAFLAGSALGVCA---FNIYMLIFGRL   77 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   77 (172)
                      ..+++|+|.++.++..+. .+...+ .++.|+++||+     ||||.+ +.+.+..++......+.   .+.+.+....+
T Consensus        14 ~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~   91 (356)
T TIGR00901        14 WLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAF   91 (356)
T ss_pred             HHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Confidence            356789999999998655 444444 99999999998     898874 56666666665555555   45666777777


Q ss_pred             HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-----CcchHHHHHhhhHHHHHHH
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-----GWGWRISLAMAAAPASILT  151 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-----~~~w~~~~~~~~~~~~~~~  151 (172)
                      +.+++.+...+...+++.|++|+|+|+++.++...+..+|..+++.+++ +.....     .++||..|++.++..++..
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~  171 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGL  171 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHH
Confidence            8888888888999999999999999999999999999999999999987 322111     1239999998887766655


Q ss_pred             Hhhh
Q 041620          152 IGAS  155 (172)
Q Consensus       152 ~~~~  155 (172)
                      +...
T Consensus       172 ~~~~  175 (356)
T TIGR00901       172 LVTL  175 (356)
T ss_pred             HHHH
Confidence            4433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.70  E-value=3.1e-16  Score=118.92  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=106.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSIL-IGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      .++++|.|+++.|+..+...+ +...+.+..++ +||+||||.++ .+.+...+......++++++.+.+.+.+.+...+
T Consensus        42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  120 (393)
T PRK15011         42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS  120 (393)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999776655 55555655566 99999998754 5556556666667778888887666665555555


Q ss_pred             hhccchhhhhhccCCccccc--cchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           85 FGNQSVPLYLSEMTTPKYRG--TFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ...+....+..|+.+++.|.  ...+..+.+.++|..++|.+++  ...++.|||..|+..++..++..+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~--~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY--ALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH--HHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            66777788888877666553  3346778888999999999998  444456999999988776665554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.69  E-value=2.4e-16  Score=123.45  Aligned_cols=143  Identities=20%  Similarity=0.203  Sum_probs=116.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      .+.|-+ +...|+.+...++..++.++.|+++|.||||+.++.+.++..++...++.++|...++.+..+.|+|.|... 
T Consensus        72 ~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-  149 (599)
T PF06609_consen   72 ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-  149 (599)
T ss_pred             HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-
Confidence            444544 556778888999999999999999999999999999999999999999999999999999999999987755 


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      .....++|..|.|.|.....+...........+|.++.  ....+.+|||.|++..+...+.++..+
T Consensus       150 ~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~--~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  150 LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ--LFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH--HhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            45666899999999988777766655555556777765  333445899999998887666554443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.69  E-value=2.1e-16  Score=124.18  Aligned_cols=144  Identities=13%  Similarity=0.011  Sum_probs=116.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------chhHHHHHHHHHH
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------FNIYMLIFGRLLL   79 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~   79 (172)
                      ++++++|+|.++.+++.+.. ......+++.|+++||+|||++++++.+++.++.+++.++      ++++.+.+.|++.
T Consensus        52 ~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~  130 (591)
T PTZ00207         52 AMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM  130 (591)
T ss_pred             HHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence            45678999999999988763 3444677789999999999999999999999999988876      6899999999999


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH-hhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN-CTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      |++.+..++.....+.+++| ++||++.++...+.++|+.+.+.+. ...  .  .+|+..+++.++..++..++..
T Consensus       131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~--~--~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF--S--DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HhHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888999999996 7899999999999999997644443 321  1  2577777777776666544443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.69  E-value=5.8e-16  Score=131.01  Aligned_cols=135  Identities=13%  Similarity=0.030  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH---HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGG---VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPL   92 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~   92 (172)
                      ...++..+.+.+...+.+++.|+++||+|||+++....   +............+++++++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            45777888889999999999999999999999764322   222222222223489999999999999999999999999


Q ss_pred             hhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           93 YLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        93 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ++.+++|+++|++++++.+.+.++|.+++|.+++  .+....+|++.|....+..++..+
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g--~l~~~~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGG--LATISGNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999  333345899988554444444333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.67  E-value=1.3e-15  Score=115.85  Aligned_cols=141  Identities=15%  Similarity=0.110  Sum_probs=114.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhH-HHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKV-SILIGGVAFLAGSALGVCA---FNIYMLIFGRLLL   79 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~   79 (172)
                      ++.|+|.+++|++......  .+..+++|+++||+     |||| .+..+.++.+++.....+.   ++++.+.+..++.
T Consensus        27 ~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~  104 (402)
T PRK11902         27 TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLV  104 (402)
T ss_pred             HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            4579999999998766665  68999999999999     7765 6777777777766665655   4577777787888


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHh
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~  153 (172)
                      +++.+...+...+++.|+.|+|+|+++.++...+..+|..+++.+..  ...+. .|||..|++.++..++..+.
T Consensus       105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~--~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL--WLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999988876  22232 48999999887766554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.67  E-value=1.1e-15  Score=113.11  Aligned_cols=143  Identities=25%  Similarity=0.297  Sum_probs=128.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKV-SILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      .+|.++.+.+.......++..++.++.+++.||+|||+ .+..+..+..++.......++.+...+..++.|++.+...+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  284 (352)
T cd06174         205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP  284 (352)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence            34889999999999999999999999999999999999 99999999999988888888888899999999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      ....++.|..|+|+|++.+++.+....+|..++|.+.+  ...+..+|+..+.+.++..++..+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g--~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG--LLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988  44445689999998888777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.66  E-value=2.2e-15  Score=114.31  Aligned_cols=145  Identities=17%  Similarity=0.131  Sum_probs=114.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++++|.++.+.+++.+...++.+++.++.|+++||+|||+.+..+.....+........++.+...+.+++.+++.+...
T Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~  323 (393)
T PRK15011        244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG  323 (393)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45678999999988887778888899999999999999998887766665555444456777777788888888877777


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      +....+..|..|+ +|++++++++...++|..++|.+++  ...+..+|+..+.+.....++..+...
T Consensus       324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G--~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAG--IVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            7777888899875 5999999998889999999999998  333556899999887766665554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.66  E-value=1.7e-15  Score=128.17  Aligned_cols=113  Identities=13%  Similarity=0.030  Sum_probs=100.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccchhHHHHHHHHHHhhhhhhhccch
Q 041620           14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAFNIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      +....+++.+.+.++..+++++.|+++||+|||++++.+.++.++..++..   ..++++.+++.|++.|++.+...+..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            345578889999999999999999999999999999988876655554433   34789999999999999999999999


Q ss_pred             hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+++.|++|+++|++++++.+.+..+|.++++.+++
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~  160 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFS  160 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.66  E-value=1.2e-15  Score=114.01  Aligned_cols=140  Identities=13%  Similarity=0.008  Sum_probs=116.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHhhhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN--IYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~   86 (172)
                      ++.+.++++.+...+...++..+++++.|++.||+|||+.+..+.....++.......++  ...+....++.|++.+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  312 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT  312 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence            456788888999999999999999999999999999999999988888887776665543  233445677788888887


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  150 (172)
                      .+..+.+..|.+|+++|++..++.+....+|..++|.+.+  ...++.||+..|.+.++..++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS--HALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH--HHHhhhchhhHHHHHHHHHHHh
Confidence            8888889999999999999999999999999999999988  4445668999998877665543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.66  E-value=1.6e-15  Score=115.98  Aligned_cols=143  Identities=14%  Similarity=0.121  Sum_probs=120.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..++..+.++.+.+.+.+++.|++.+.......
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888999988999999999999999999999999998888888888888888889888899999998888777788


Q ss_pred             hhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           92 LYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .++.|.+|++.|++..+. ++....+|..++|.+.+  ...+..||+..|...++..++..+...+
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G--~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAG--NLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHH--HHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988766 67788899999999988  4445568999999877776655544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.66  E-value=4.2e-15  Score=112.94  Aligned_cols=143  Identities=13%  Similarity=0.055  Sum_probs=115.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      ++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.......++.+.+.+..++.|++.+..++
T Consensus       248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  327 (406)
T PRK11551        248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQS  327 (406)
T ss_pred             HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHH
Confidence            34688999999999999999999999999999999999998887766666666666667777777788888988877888


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ...++..|.+|+++|++..++.+....+|..++|.+.+  ...++ .+|...+.......++..+.
T Consensus       328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g--~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG--QLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh--hhhccCCchHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999988  33232 24555665554444444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.65  E-value=3e-15  Score=113.13  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh----HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK----VSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   83 (172)
                      .+++|.|.++.|+..+.+.++..+++++.|+++||+||+    +.+.+.....  ........+++|.+.+.|++.|++.
T Consensus        31 l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~  108 (382)
T PRK11128         31 LKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFF  108 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999984    3333222221  2222334588999999999999998


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      +...+...++..++  +++|++..+......++|..++|.+++  ...++++||..|+..++..++..
T Consensus       109 ~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg--~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        109 SPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTG--KLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             cccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHH--HHHHHcChhHHHHHHHHHHHHHH
Confidence            88888877777766  466888899988888999999999998  44456699999987765444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.65  E-value=1.9e-15  Score=117.02  Aligned_cols=148  Identities=14%  Similarity=-0.049  Sum_probs=107.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh--hhhccchhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA--LGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++|.|..+.++..+...++..++.++.|+++||+|||+.+........+...  .....++.+...+.+++.|++...
T Consensus       286 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  365 (467)
T PRK09556        286 FQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG  365 (467)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999999999999999876665444333322  222335666666778888865433


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHh-hhc--C-------CCCcchHHHHHhhhHHHHHHHHhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNC-TQK--I-------KGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~-~~~--~-------~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      ..........|.+|+++|+++.++.+...++ |..++|.+.+ +..  .       ....+|+..|.+..+..++..+..
T Consensus       366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            3333345677999999999999999988886 7789999888 433  0       004579999988766666554443


Q ss_pred             h
Q 041620          155 S  155 (172)
Q Consensus       155 ~  155 (172)
                      .
T Consensus       446 ~  446 (467)
T PRK09556        446 A  446 (467)
T ss_pred             H
Confidence            3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=4.2e-15  Score=115.79  Aligned_cols=148  Identities=13%  Similarity=0.049  Sum_probs=105.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh---hhccchhHHHHHHHHHHhhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL---GVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +++|.+..+.++......++..++.++.|+++||+|||+.+..+.+...+....   ....++...+.+.+++.|++.+.
T Consensus       279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (490)
T PRK10642        279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC  358 (490)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            456788888888888888999999999999999999999988877654433222   22234567777888888888777


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..+....+..|.+|++.|+++++..+.....++.++|.+.+ +....  .+|+..++...+.+++..+..++.+
T Consensus       359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p  430 (490)
T PRK10642        359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMK  430 (490)
T ss_pred             HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhc
Confidence            77778888899999999999999743334455667787776 32211  2466666655556555555444444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.65  E-value=2.6e-15  Score=121.12  Aligned_cols=136  Identities=10%  Similarity=-0.094  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM   97 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~   97 (172)
                      ......+..++.+++.++.|+++||+|||++++.+.++.++++++..+.++...+++.+++.|++.+...+....+++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666789999999999999999999999999999999988888887777777888888988888888999999999


Q ss_pred             CCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           98 TTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      +|++.|++++|+.+....+|.+++|.+++ +...    +...+|++.++..++..++..++
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999987 4321    34566766666655555544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=2.5e-15  Score=114.02  Aligned_cols=138  Identities=15%  Similarity=0.093  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620           17 LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSE   96 (172)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~   96 (172)
                      +.++..+...++..++.++.|++.||+|||+.+..+..+..++.......++.+...+..++.|++.+..++.......|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34555667778888999999999999999999988888888877777777888888888999999999888887888889


Q ss_pred             cCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           97 MTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        97 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..|+++|++..++++....+|..++|.+.+  ...+..||+..+++.+...++..+...+
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAG--LVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888877  3334558999998877766665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.64  E-value=4.2e-15  Score=112.88  Aligned_cols=137  Identities=15%  Similarity=0.082  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM   97 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~   97 (172)
                      .+.+.+...++..++.+..|+++||+|||+.+..+.....+..+.....++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            44555666778888999999999999999999988888777777666677888888899999999999889888999999


Q ss_pred             CCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           98 TTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .|+++|++.+++++....+|..++|.+++  ...+..+|+..|++.++..++..+...+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGA--AISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHH--HHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998  4445668999999888777766655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.64  E-value=3.3e-15  Score=114.05  Aligned_cols=145  Identities=10%  Similarity=-0.013  Sum_probs=119.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.....+.++.+...+..++.|++.+...
T Consensus       251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            34478899999999999999999999999999999888888888887777777777777888777888888999888777


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +...+++.|..|++.|++.+++++....+|..++|.+.+  ...+..|++..+...+...++..+..
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G--~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG--GLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH--HHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999999999999998  33445577777776666555544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.62  E-value=7.9e-15  Score=114.31  Aligned_cols=144  Identities=14%  Similarity=0.062  Sum_probs=113.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHhhhhhhcc---chhHHHHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVS-ILIGGVAFLAGSALGVCA---FNIYMLIFGRLLL   79 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~   79 (172)
                      ++.|.|.++++.. +...... ++.+++|+++||+     |||+. +..+.+..+++...+.+.   ++++.+.+.+++.
T Consensus        40 ~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~  117 (491)
T PRK11010         40 TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVI  117 (491)
T ss_pred             HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            4568888888886 3333333 6899999999999     99886 556666666665555553   5788888899999


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHhhhHHHHHHHHhhhh
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKG-GWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      +++.+...+...++..|++|+|+|+++.++...+..+|..+++.+..  ...+ ..|||..|++.++..++..+...+
T Consensus       118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~--~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL--WLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998877  3333 359999999988776665544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.62  E-value=8.7e-15  Score=110.67  Aligned_cols=135  Identities=14%  Similarity=0.058  Sum_probs=105.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH-HHHHhh-hhhhccchhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGV-AFLAGS-ALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+++|.|.++++++.+...+...+++++.|.++||+||++....... ...+.. .....+++++.+++.|.+.+.+.+.
T Consensus        31 l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~  110 (382)
T TIGR00902        31 LKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSA  110 (382)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999998543322211 111111 2333568899999999999998888


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP  146 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  146 (172)
                      ..+...++..+.  +++|++..+......++|..++|.+++  ...+.+|||..|.+....
T Consensus       111 ~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g--~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       111 GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG--GLIGMFDEQNILAILTAG  167 (382)
T ss_pred             chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH--HHHHHcChhHHHHHHHHH
Confidence            788888877654  577899999999999999999999988  444567999998876554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.62  E-value=9.9e-15  Score=110.76  Aligned_cols=144  Identities=15%  Similarity=0.070  Sum_probs=106.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccc-----hhHHHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAF-----NIYMLIFGRLLL   79 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~l~   79 (172)
                      ++++|.|+++.++..+...++..+++++.|+++||+|||+.++.+....++......   ..+     ......+.+++.
T Consensus        30 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (396)
T TIGR00882        30 HDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL  109 (396)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999887666654433221   111     233445667888


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      |++.+...+....+..|..  ++++...+......++|..++|.+++  ... ..+|+..|++.++..++..+..+.
T Consensus       110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g--~l~-~~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG--ILF-SIDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh--hhh-ccCchHHHHHHHHHHHHHHHHHHH
Confidence            8888877777777766643  33455667777788899999999987  222 248999999887777665544433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=5.5e-15  Score=109.49  Aligned_cols=153  Identities=15%  Similarity=0.117  Sum_probs=130.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccchhHHHHHHHHHHhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~   82 (172)
                      +.++.++++..|.+++...++.++.+.+++.+++.+|+|+|+.++.+..++++++.+..   ...++..++++.++.|.|
T Consensus        38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G  117 (422)
T COG0738          38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG  117 (422)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999999999999999998875   457889999999999999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC----------------CCCcchHHHHHhhhH
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI----------------KGGWGWRISLAMAAA  145 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~----------------~~~~~w~~~~~~~~~  145 (172)
                      .+...+..+.++....|+++..+.+++.+.++.+|..++|.+++ +...                .+...|+.+|...+.
T Consensus       118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~  197 (422)
T COG0738         118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG  197 (422)
T ss_pred             hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999988888999999999999999999998 3221                011247788877766


Q ss_pred             HHHHHHHhhhhhc
Q 041620          146 PASILTIGASDWW  158 (172)
Q Consensus       146 ~~~~~~~~~~~~~  158 (172)
                      ..++..+.....+
T Consensus       198 ~lvll~v~~~~~k  210 (422)
T COG0738         198 LLVLLAVLILLSK  210 (422)
T ss_pred             HHHHHHHHHHhcc
Confidence            6555555444333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.61  E-value=3e-15  Score=112.41  Aligned_cols=142  Identities=25%  Similarity=0.342  Sum_probs=113.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--c-----hhHHHHHHHHHHhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--F-----NIYMLIFGRLLLGVGI   83 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~l~g~~~   83 (172)
                      -+.++...+.+.....+|.++|++++|++.||+|||+++...+++++++.+++++.  +     -.+++...|+++|+|.
T Consensus        79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI  158 (538)
T KOG0252|consen   79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI  158 (538)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence            45677788888999999999999999999999999999999999999998876654  1     2467888999999999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-h----hcCCCC--------cchHHHHHhhhHHHHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-T----QKIKGG--------WGWRISLAMAAAPASIL  150 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~--------~~w~~~~~~~~~~~~~~  150 (172)
                      |+.+|...+..+|...++.||...+........|...+..++. +    ....+.        .=||..+.+.+++++..
T Consensus       159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~  238 (538)
T KOG0252|consen  159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV  238 (538)
T ss_pred             cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876666666555555443 2    111111        13999998877776655


Q ss_pred             HH
Q 041620          151 TI  152 (172)
Q Consensus       151 ~~  152 (172)
                      ..
T Consensus       239 ly  240 (538)
T KOG0252|consen  239 LY  240 (538)
T ss_pred             HH
Confidence            44

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.61  E-value=1.8e-14  Score=112.21  Aligned_cols=137  Identities=10%  Similarity=-0.056  Sum_probs=105.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +++|.++.+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.+......++.+......
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI  383 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence            5788999999999999999999999999999999999999888876666554433322  33444444445444433334


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHH
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPA  147 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  147 (172)
                      .+..+.++.|.+|+++|++.+++++....+|..++|.+.+  ...+..||+..+...+...
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g--~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA--LIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH--HHhccCChHHHHHHHHHHH
Confidence            5667788999999999999999999999999999999988  4445668887775544433

>PRK12382 putative transporter; Provisional

Probab=99.60  E-value=7.2e-15  Score=111.29  Aligned_cols=136  Identities=14%  Similarity=0.096  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM   97 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~   97 (172)
                      .+.......++..+++++.|++.||+|||+.+..+..+..++.......++.+...+..++.|++.+...+.......|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            44555667778889999999999999999999988888888877777778888888889999999988888888889999


Q ss_pred             CCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           98 TTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      +|+|+|++..++++....+|..++|.+.+  ...++.||+..|...+...++..+...
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAG--MLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988  444556899999988777666555433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.60  E-value=1.4e-14  Score=108.81  Aligned_cols=144  Identities=14%  Similarity=0.137  Sum_probs=115.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++++|.++++.++..........++.++.|++.||+|||+.+..+.+...+........++.+...+.+++.|++.+...
T Consensus       227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  306 (375)
T TIGR00899       227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILA  306 (375)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999988877777778889999999999999999888777666555555556777878888889999888888


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +....+..|..|+ +|++++++++...++|..++|.+.+  ...+..+|+..+++.++..++..+..
T Consensus       307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       307 GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGG--ILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHHH
Confidence            8888888998875 4569999999999999999999988  33345589999988777766555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.59  E-value=2.8e-14  Score=108.06  Aligned_cols=147  Identities=14%  Similarity=0.053  Sum_probs=114.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh-hhhccchhHHHHHHHHHHhhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA-LGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      +++.|.|.++.++..+...++..+++++.|+++||++||+... +..+...+.. .....++.+.+.+..++.|++....
T Consensus       233 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~  311 (390)
T PRK03545        233 QQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI  311 (390)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence            3457889999999999999999999999999999999887544 4443333333 3344567788888888999988776


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .+.....+.|..| ++|++++++++....+|..++|.+++  ...++.|++..+...+...++..+......
T Consensus       312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        312 GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN--QVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            6777788888876 68899999999999999999999998  555677999999988777766555444333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.57  E-value=3.2e-14  Score=108.78  Aligned_cols=145  Identities=15%  Similarity=0.092  Sum_probs=95.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cc----h-hHHHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AF----N-IYMLIFGRLLL   79 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~----~-~~~~~~~~~l~   79 (172)
                      ++++|.|+.+.|++.+...++..+++++.|+++||+|||++++.+..+.++.......   .+    + .....+.++..
T Consensus        38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (420)
T PRK09528         38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL  117 (420)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568999999999999999999999999999999999999988776655443322111   11    1 11112223333


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      |.+.....+....+..+ . +++|++.++..+...++|..++|.+++ +.   + .+|+..|+..++..++..+..++..
T Consensus       118 ~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        118 GFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILF---N-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             hhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHH---h-cCchHhHHHHHHHHHHHHHHHhccc
Confidence            33332222223333222 2 345677888888888999999999988 43   2 3789999887777665555444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.57  E-value=3.2e-14  Score=109.04  Aligned_cols=149  Identities=16%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHhhhhhhccch------hHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKV-SILIGGVAFLAGSALGVCAFN------IYMLIFG   75 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   75 (172)
                      .++++|+++.+.|.+.+...+...+..|+.|+++||    +|||| .++.+....+++.+.+...++      ...+.+.
T Consensus        26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  105 (437)
T TIGR00792        26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYIT  105 (437)
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            356789999999999999999999999999999997    67744 566777777777666655432      4556667


Q ss_pred             HHHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-hh-cC---CCCcchHHHHHhhhHHHHH
Q 041620           76 RLLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KI---KGGWGWRISLAMAAAPASI  149 (172)
Q Consensus        76 ~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~---~~~~~w~~~~~~~~~~~~~  149 (172)
                      +++.+++.+.......++..|.. ++++|++..+..+.+..+|..+++.+.. +. ..   .+..+|+..+.+.+++.++
T Consensus       106 ~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~  185 (437)
T TIGR00792       106 YILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVV  185 (437)
T ss_pred             HHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHH
Confidence            78888888888888888889987 4688999999988888888777666544 21 11   2356899999888877766


Q ss_pred             HHHhhh
Q 041620          150 LTIGAS  155 (172)
Q Consensus       150 ~~~~~~  155 (172)
                      ..+...
T Consensus       186 ~~~~~~  191 (437)
T TIGR00792       186 SLIICF  191 (437)
T ss_pred             HHHHHH
Confidence            554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.56  E-value=5.8e-14  Score=106.10  Aligned_cols=138  Identities=13%  Similarity=0.101  Sum_probs=109.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      +.|.++++.+...+...++..+++++.|++.||+|+|+++..+.....++.....  + ........++.|++.....+.
T Consensus       229 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~  305 (381)
T PRK03633        229 HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPV  305 (381)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHH
Confidence            4588889999999998999999999999999999999998888777776654432  2 223345667778777777888


Q ss_pred             hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ....+.|..|+++++...+.++...++|..++|.+++  ...++.+|++.|.+.+...++..+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G--~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTA--MLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCccHHHHHHHHHHHHHHH
Confidence            8888999999888888888888889999999999998  334456788888887666654443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=1.3e-13  Score=106.70  Aligned_cols=148  Identities=15%  Similarity=0.105  Sum_probs=123.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHhhhhhhc--------cchhHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK--VSILIGGVAFLAGSALGVC--------AFNIYMLIFGRL   77 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   77 (172)
                      ++++|++.++...+.....+..++|++++|++.||+|.|  ++++.+.+++.+..+...+        .++.+.+++..+
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~  388 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV  388 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence            457899999999999999999999999999999999999  8888888777555444343        567888999999


Q ss_pred             HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      +.|+..|..++..-++.+|..|+++.+..+|++.......+.++|++.+ +....+  +-|..+....++.++..++...
T Consensus       389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999998 554444  3677776666665555554433


Q ss_pred             h
Q 041620          157 W  157 (172)
Q Consensus       157 ~  157 (172)
                      .
T Consensus       467 v  467 (477)
T PF11700_consen  467 V  467 (477)
T ss_pred             c
Confidence            3

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.54  E-value=6.9e-14  Score=109.33  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=127.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++++|.++...|++.+...+|.++|+++.+++.+|+++++.+..+.+..++..+..++.++.+...+..++.|++.....
T Consensus       246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~  325 (524)
T PF05977_consen  246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN  325 (524)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      +..++.+.+..|++.||+.+++++.....+..+|.++.+  ...+..|.+..+.+.++..++..++..
T Consensus       326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G--~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG--FLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988  444556788888776665444444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.54  E-value=7.5e-15  Score=114.26  Aligned_cols=150  Identities=17%  Similarity=0.185  Sum_probs=129.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHH-HHHHhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFG-RLLLGVGIG   84 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~~   84 (172)
                      +.+++++.+.++++|+.++......+..|+.+.+.||+|.|++.+.+.++..++.++..+++++|.+++. .++.|+|.+
T Consensus        71 ~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~  150 (509)
T KOG2504|consen   71 ELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLG  150 (509)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccch
Confidence            3567889999999999999999999999999999999999999999999999999999999999887765 788899999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..+......+..++ +|+|+.++|+...+.++|..+-|.+..  .+.+..|||+.+++.+...+-.++......
T Consensus       151 ~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~--~l~~~~G~r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  151 LIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLK--YLLSKYGWRGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             hhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHH--HHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999888777 688999999999999999988888855  556677999999988777755544444333

>PRK03699 putative transporter; Provisional

Probab=99.54  E-value=8.7e-14  Score=105.60  Aligned_cols=144  Identities=14%  Similarity=0.063  Sum_probs=115.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++++|.|+++.+...+...++..++.++.|+++||++||+.+.....+..+........++.+...+..++.|++.+..+
T Consensus       233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  312 (394)
T PRK03699        233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIY  312 (394)
T ss_pred             HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999888877777666666666777777777888898888777


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +....+..|..| +++++..+.......+|..++|.+.+  ...+..|++..++...+..++..+..
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G--~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        313 TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS--PIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH--HHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            877777788775 44677788888888899999999988  34445688888887777666554433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=5.4e-14  Score=108.16  Aligned_cols=147  Identities=10%  Similarity=-0.075  Sum_probs=107.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cc------hhHHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AF------NIYMLIFGRL   77 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~   77 (172)
                      ++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+...+     .+      +...+....+
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (481)
T TIGR00879       312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL  391 (481)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence            456788888888888888999999999999999999999999887777776655541     12      2222222222


Q ss_pred             HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      ..+.......+....+..|.+|+++|++.+++.+...++|..++|.+.+  ...++.+|++.|++.+..+++..+...+.
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP--TMLESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCccceehhHHHHHHHHHHHHhee
Confidence            2222222334666777899999999999999999999999999999877  33344578888888777766665554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.52  E-value=2.5e-13  Score=102.72  Aligned_cols=139  Identities=9%  Similarity=-0.007  Sum_probs=119.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      ++.|.++++.+.......++.+++.++.+++.||+|+|+.+.++.+...+......+.++.+.+++.+.+.|++.+...+
T Consensus       233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~  312 (382)
T TIGR00902       233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL  312 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999988899999999999999999999999999999999988888899999999999999999999999


Q ss_pred             chhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ....++.+. |+++|++..++++ ....+|..++|.+++  ...++.++ ..|...+..+++..
T Consensus       313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G--~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG--FIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccH-HHHHHHHHHHHHHH
Confidence            999999998 9999999999976 467899999999999  44455565 55655555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=1.6e-13  Score=103.20  Aligned_cols=136  Identities=16%  Similarity=0.062  Sum_probs=104.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhh-h-hhhc--cchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS-A-LGVC--AFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~l~g~~~~   84 (172)
                      ++++.++++.+.......++..++.++.|+++||+|||+.+.....+..+.. . ....  .++.+......++.|++.+
T Consensus       248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  327 (394)
T TIGR00883       248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG  327 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            5578889999999999999999999999999999999998775554443322 1 1222  2466777777888899888


Q ss_pred             hhccchhhhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHH
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAP  146 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~  146 (172)
                      ...+....++.|.+|+++|+++.++ ++....+|..++|.+.+  ...++.+ |+..++.....
T Consensus       328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g--~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA--ALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH--HHHHHcCcchhHHHHHHHH
Confidence            8889999999999999999999998 56666788889999988  2223334 77666554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=8.5e-14  Score=107.62  Aligned_cols=142  Identities=10%  Similarity=0.011  Sum_probs=111.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh--hchhHHHHHH--HHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA--LGRKVSILIG--GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      ++.|.++.+.+...+...++..+++++.|+++||  +++|+...+.  .+...+..+.....++++.+++.+++.|++.+
T Consensus       269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g  348 (455)
T TIGR00892       269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG  348 (455)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence            3468899999999999999999999999999997  3344333333  33333444445566788888889999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCc-chHHHHHhhhHHHHHHHH
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGW-GWRISLAMAAAPASILTI  152 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~  152 (172)
                      ...+.....+.|.+|++++++.+++++....+|..++|.+++  ...+.. +|+..|++.++..++..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G--~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG--RLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee--eeehhcCCcchHHHHhhHHHHHHHH
Confidence            888889999999999999999999999999999999999988  444444 588888887766554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.50  E-value=1.3e-13  Score=104.27  Aligned_cols=132  Identities=13%  Similarity=0.002  Sum_probs=105.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh-hhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA-LGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++.|.++++.+++.+...++..++.++.+++.||+|||+.+..+.....+... .....++.+.+.+..++.+++.+...
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW  346 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence            45789999999999999999999999999999999999998888766533332 22334566666666677777777777


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAM  142 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~  142 (172)
                      +..+.++.|.+|+++|++.+|+.+....+|..++|.+.+  .+.++.| |+..+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g--~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA--LLAQRLDEYGTALAS  400 (405)
T ss_pred             hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH--HHHHhccccchhHHh
Confidence            788889999999999999999999999999999999998  3334445 6555543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=4.3e-13  Score=100.69  Aligned_cols=143  Identities=14%  Similarity=0.036  Sum_probs=102.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhH--HHHH------HHHHHHHhhhhhhccchhHHHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKV--SILI------GGVAFLAGSALGVCAFNIYMLIFGRLLL   79 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~   79 (172)
                      +++.+.++.+.++..+...++..++.++.|+++||++||+  ....      +.+...+........++.+.......+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG  322 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            3567888999999999999999999999999999999996  1111      1111111111111223444444444444


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHh
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIG  153 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~  153 (172)
                      +.+.+ ..+....+..|..|+++|++.+++.+....+|..++|.+.+  ...+..+ |+..+.+.++..++..+.
T Consensus       323 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g--~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       323 FFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIG--AIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             Hhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhh--hhccCCCchhHHHHHHHHHHHHHHHH
Confidence            44444 68889999999999999999999999999999999999988  4455566 888888777766555443

>PRK09952 shikimate transporter; Provisional

Probab=99.50  E-value=7.7e-13  Score=101.84  Aligned_cols=146  Identities=13%  Similarity=0.058  Sum_probs=103.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---c-chhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---A-FNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~g~~~~   84 (172)
                      +++|.+++..........+...++.++.|+++||+|||+.+..+.++..+.......   . ++.+...+..++.+++.+
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD  358 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            456777776655555666777888999999999999999988887665554433222   2 234444555666788888


Q ss_pred             hhccchhhhhhccCCccccccchhh-hhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ...+....++.|.+|++.|+++.++ ++.+..+|+.++|.+.+ +....+ .+|+..+....+..++..+...
T Consensus       359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHH
Confidence            7788889999999999999999998 45556688999999988 432221 2477777776666665554433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.50  E-value=2.9e-13  Score=102.93  Aligned_cols=145  Identities=20%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhc
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~   87 (172)
                      +++|+++..-+.+.+.--.-....+.||++||+ |+|+++..+.++..++.+....++  ....+.++..+.++|.|..-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            779998888777777665667888999999995 999999999999999999988874  67888999999999999999


Q ss_pred             cchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           88 QSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      +....++.|.+|+++  |-...++++.+.++|+.++|.+.+  ...+..||...|.+.++......+.....
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~--~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG--LLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH--HHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999998655  666788899999999999999987  66677799999998877766655543333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.50  E-value=1.9e-13  Score=105.98  Aligned_cols=150  Identities=11%  Similarity=-0.018  Sum_probs=106.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--ch-hH-HHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FN-IY-MLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~   84 (172)
                      ++.|.+.+...+......+...++.++.++++||+|||+.++.+.++.+++.+.....  ++ .+ ....+.++.+.+.+
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  378 (479)
T PRK10077        299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA  378 (479)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            3456666666677777778889999999999999999999999998888877665432  12 11 22233444444444


Q ss_pred             h-hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh---cCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           85 F-GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ---KIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        85 ~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      . ..+....++.|.+|+++|++++++.+....+|..+++.+.. +.   ...+..+|+..|++.++.+++..+..++..
T Consensus       379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (479)
T PRK10077        379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV  457 (479)
T ss_pred             ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence            3 23567899999999999999999999999888888866654 22   233456788888887776666555444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.49  E-value=4.8e-13  Score=102.83  Aligned_cols=118  Identities=13%  Similarity=-0.005  Sum_probs=86.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh-h-h--ccchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL-G-V--CAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~g~~~~   84 (172)
                      +..|++.++.++......++..++.++.|+++||+|||+.++.+.....+.... . .  ..++.........+.+++.+
T Consensus       267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  346 (434)
T PRK15075        267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG  346 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            447888888888888888999999999999999999999887765444322211 1 1  12333344444555667777


Q ss_pred             hhccchhhhhhccCCccccccchhhh-hHHHHHHHHHHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGF-QLCAAIGLLSANLLNC  126 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~  126 (172)
                      ...+....+..|.+|++.|++..++. +.+..+++.++|.+.+
T Consensus       347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g  389 (434)
T PRK15075        347 SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST  389 (434)
T ss_pred             HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence            66666778899999999999999995 4444455777888877

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.49  E-value=1.9e-13  Score=106.90  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=116.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHhhhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..-|+...+++.....+..++.++++|.++||++|||+++.+.++..+......+     ..+.+.+++..++.|++.+.
T Consensus        40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~  119 (524)
T PF05977_consen   40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAF  119 (524)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence            3457788888889989999999999999999999999999998777655443332     24788899999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ..+..++.+.|..|+|+...++++.+...++...+||.+++ +.   ...|-.+.|.+.++..++....
T Consensus       120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv---a~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  120 FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV---AFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 33   2236677888776665554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=101.11  Aligned_cols=148  Identities=15%  Similarity=0.122  Sum_probs=128.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .+..++.+..+..+++.....|..+++..+|.++|++|||+.+....+..++..++...++|+..+++.|.+.|+|.|+ 
T Consensus       104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-  182 (528)
T KOG0253|consen  104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-  182 (528)
T ss_pred             HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-
Confidence            3456778889999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .+...++-.|..|..+|...+-+. ..+.+|.++...++-  ....+.||||.+.....+..+...+.++.+
T Consensus       183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law--~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW--GVMSNFGWRYLLFTSSTPLMFAARFLVWVY  251 (528)
T ss_pred             ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence            888899999999999999887777 888999999888875  222345999998888877666666555555

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.48  E-value=5.3e-13  Score=103.10  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=112.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHHHH-HHHHHHhhhhhhccchh-------------
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGRKVSILIG-GVAFLAGSALGVCAFNI-------------   69 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr~~~~~~~-~~~~~~~~~~~~~~~~~-------------   69 (172)
                      .+++|.++.+.+.+.....+...+.+|+.|+++|    |+||||.++.+ .....++..+..++++.             
T Consensus        31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~  110 (477)
T TIGR01301        31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK  110 (477)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence            3568899999999999999999999999999999    59999998875 55555555555555443             


Q ss_pred             ----HHHHHHHHHHhhhhhhhccchhhhhhccCCcccc--ccchhhhhHHHHHHHHHHHHHHh-hh--cC----CCC---
Q 041620           70 ----YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYR--GTFNIGFQLCAAIGLLSANLLNC-TQ--KI----KGG---  133 (172)
Q Consensus        70 ----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~-~~--~~----~~~---  133 (172)
                          +...+...+..++....++...++++|.+|+++|  +.+.++.+...++|..+++.+++ ..  ..    .+.   
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence                2233344455567777888899999999998865  57889899999999999999887 31  10    000   


Q ss_pred             ---cchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620          134 ---WGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus       134 ---~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                         .+.+..|++.++..++..+...+..+
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence               26788998877766665555444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.48  E-value=4.5e-13  Score=101.74  Aligned_cols=146  Identities=16%  Similarity=0.111  Sum_probs=107.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      ++|.+.++.+...+...++..+++++.+++.||+|||+.+..+..+..++....... ++....  ..++.|++.+...+
T Consensus       234 ~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~  311 (393)
T PRK09705        234 EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFP  311 (393)
T ss_pred             HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHH
Confidence            368899999999999999999999999999999999999888877776666544332 222222  23456777777777


Q ss_pred             chhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           89 SVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        89 ~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      .......+..+ +++|++..++.+....++..++|.+.+ +....+  +|+..|.+....+++..+....+.+
T Consensus       312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhcc
Confidence            77666677775 678999999999999999999999988 332222  3777777766666555444444333

>PRK10504 putative transporter; Provisional

Probab=99.48  E-value=9.5e-13  Score=102.02  Aligned_cols=117  Identities=11%  Similarity=0.014  Sum_probs=98.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhh
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~   86 (172)
                      ..|.++.+.++......++..++.++.+++.||+|||+++..+..+..+...+..+.   ++.+...+..++.|++.+..
T Consensus       291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  370 (471)
T PRK10504        291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTR  370 (471)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            468889999999888888888899999999999999999998888777766554443   33444445667788888888


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+..+.+..+..|+++|++.+++.+....+|..+++.+.+
T Consensus       371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999987

>TIGR00897 2A0118 polyol permease family

Probab=99.47  E-value=1.1e-12  Score=99.84  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSIL-IGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~   82 (172)
                      +++|.++++.++......++..++++..|+++||+|||+.+. .+.+...+......     ..++.+...+..++.|++
T Consensus       250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~  329 (402)
T TIGR00897       250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIF  329 (402)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            447888999999888899999999999999999999888754 33333333222222     124566677788888888


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .+...+ ......|.. +++|++++++.+....+|..++|.+.+  ...+..||+..+++.++..++..+...+
T Consensus       330 ~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g--~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       330 LAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAV--LFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            776544 445566754 568999999999999999999999988  3345568999998887776666555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.47  E-value=4e-13  Score=103.77  Aligned_cols=146  Identities=14%  Similarity=0.011  Sum_probs=97.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSI-LIGGVAFLAGSALGVC--AFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~   82 (172)
                      +++.|.+.++.++......++..++.++.|+++||+  +||+.. .....+..++......  ..+.+...+..++.|.+
T Consensus       281 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  360 (452)
T PRK11273        281 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFL  360 (452)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence            345788888899888888899999999999999999  555432 2222222232222222  23444444455555554


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHH-HHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLL-SANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..........+..|.+|++.|++++++.+....+|+. .+|.+.+  ...++.||+..|++....+++.++...
T Consensus       361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g--~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        361 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH--HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3332333445678999999999999999888888765 4788877  334556899999887776666554444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.46  E-value=9.4e-13  Score=101.23  Aligned_cols=144  Identities=17%  Similarity=0.067  Sum_probs=97.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--c-hhHHHHHH---HHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--G-RKVSILIG---GVAFLAGSALGVCAFNIYMLIFGRLLLGV   81 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g-r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   81 (172)
                      +++.|.+..+.+...+...++..++.++.|+++||+  + |++.....   .....+...... ..+........+..|+
T Consensus       271 ~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~  349 (434)
T PRK11663        271 SETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGF  349 (434)
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999  3 23322221   111111111111 2333333334444454


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +.............|.+|+++|++.+++.+....+|..++|.+.+  ...+..||+..|+..++..++..+..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g--~l~~~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        350 FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA--KVLEIWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH--HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            332222333456789999999999999999999999999999988  44456689999988877766655543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.46  E-value=2.3e-12  Score=94.59  Aligned_cols=145  Identities=19%  Similarity=0.186  Sum_probs=128.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++++++|+|.+..|.+++...+.....+++..+++.|+|.++.+..++++.+++..+-... +.+.++....+.|.+.+.
T Consensus        37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav  115 (395)
T COG2807          37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAV  115 (395)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHH
Confidence            5678999999999999999999999999999999999999999999999999999887766 778889999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+...+.++-+.+| |+-+..+++|....++|+.+++.+.- +....  .+||......+.++++..+..
T Consensus       116 ~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         116 INVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997 45589999999999999888888876 33222  379999999999988777643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.46  E-value=3.8e-12  Score=96.95  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=104.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~   82 (172)
                      ++++|.++.+.++......++..++.++.++++||+++|+.+..+.....++.......     .+.+.+.+..++.|++
T Consensus       243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g  322 (406)
T PRK15402        243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFG  322 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            35578899999988887888899999999999999999999888877776665554432     3556667788889999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  150 (172)
                      .+...+........ .++++|++..+.++....+|..+++.+.+  ...+..++........+..++.
T Consensus       323 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        323 IGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSK--HAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHH--hcccCCchHHHHHHHHHHHHHH
Confidence            88877766665543 34589999999999999999999999987  4444445555444444443333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.45  E-value=2e-12  Score=100.90  Aligned_cols=147  Identities=14%  Similarity=0.069  Sum_probs=108.9

Q ss_pred             CCCCCChhHHHHHHH-HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh---hhcc-chhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFIS-SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL---GVCA-FNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l~g~~~   83 (172)
                      ++.|.|+++.+.... ...++.+++.++.|+++||+|+|+.+..+.++.++....   .... ++.+.+....++..++.
T Consensus       251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            457999999999874 556899999999999999999988877665554443322   2222 35545555566656555


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      +...+...++..+..+++.+++..++.+...++|..+++.+.+  ...+..||+..|.+..+.++...+.....
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G--~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG--WFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6556667888899999999999999999999999888877877  33345589999988877777665555444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.45  E-value=1.8e-12  Score=99.17  Aligned_cols=128  Identities=14%  Similarity=-0.012  Sum_probs=92.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~   87 (172)
                      +.|.++++.+...+...++..++.++.|++.||+|||+.+..+.++..+........+  +........+..+.+.....
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (426)
T PRK12307        260 GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG  339 (426)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence            3578888889888888999999999999999999999998888877666554443322  22222222222222222334


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRIS  139 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~  139 (172)
                      +..+.++.|.+|+++|++++|+.+....+|..++|.+.+  ...+..++...
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g--~l~~~~g~~~~  389 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT--WLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH--HHHHcccHHHH
Confidence            556678899999999999999999888999999999988  33444555543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.44  E-value=1.3e-12  Score=97.60  Aligned_cols=142  Identities=18%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +++|++..+...+.....+..++++++.|+|.||+|.|+++..+.++..+.++...+......++++..+.|+..|..++
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            57999999999999999999999999999999999999999999999999888888877777788889999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..-.+..+..|+++-++.+|+|+.....++.++|.+.+ +....++  -|..+....++..+..+
T Consensus       361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~--~r~g~~~i~vll~iGl~  423 (438)
T COG2270         361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS--SRAGVLSIIVLLLIGLL  423 (438)
T ss_pred             HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhHh
Confidence            99999999999999999999999999999999999988 5555543  45555544444444333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=3.4e-12  Score=97.75  Aligned_cols=137  Identities=12%  Similarity=-0.056  Sum_probs=96.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+++.|.|.++.|++.+...++..+++++.|+++||+|| |+++.++.+...+......+.++++.+.+.+++.|++.+.
T Consensus        29 l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  108 (418)
T TIGR00889        29 MSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMP  108 (418)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence            356789999999999999999999999999999999965 7788888888877777777888899999999999987765


Q ss_pred             hccchhhhh----h----ccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           86 GNQSVPLYL----S----EMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        86 ~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      ..+...++.    .    |......|.+..|      .+|.+++|.+++  .......|+. |++.++..++..+
T Consensus       109 ~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g--~l~~~~~~~~-f~~~~~~~~~~~~  174 (418)
T TIGR00889       109 TIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS--LLDIELSNIQ-LYITAGSSALLGV  174 (418)
T ss_pred             HHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH--HhcccchhHH-HHHHHHHHHHHHH
Confidence            555444332    1    2233334555444      357778888877  2222223543 4444444444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.43  E-value=3.3e-12  Score=96.99  Aligned_cols=141  Identities=12%  Similarity=0.144  Sum_probs=115.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.+.++.+...+...+...++.+..+++.||+|||+.+.++.++.++........++.+.+.+..++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888888889999999999999999999999888888777767778888888889999998877766777


Q ss_pred             hhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           92 LYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+..+..|++.+++..+. ++....+|..+++.+++  ...+..||+..|.+.++..++..+..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G--~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG--NMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH--HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            788888888888888777 67889999999999988  44455689999988877766655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.43  E-value=6.3e-13  Score=99.08  Aligned_cols=117  Identities=12%  Similarity=0.006  Sum_probs=105.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch-hHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN-IYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~   88 (172)
                      .+|.++.+.+.......++..++.++.+++.||++||+.+..+..+.++......+.++ .+...+..++.|++.+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (365)
T TIGR00900       241 YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV  320 (365)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999998887777777776666664 78888889999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ....++.|..|+|+|++..++++....++..++|.+.+
T Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g  358 (365)
T TIGR00900       321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG  358 (365)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=4.8e-12  Score=94.83  Aligned_cols=148  Identities=11%  Similarity=0.064  Sum_probs=120.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~   85 (172)
                      .++..|+|.+..++....+.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.+...+..++.|+....
T Consensus       238 L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~  316 (394)
T COG2814         238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSP  316 (394)
T ss_pred             HHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence            467789999999999999999999999999999999 88888888877777766665554 5666777777778888777


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .........++ ..+|.+..+.+++....++|..+|..+++  ...+++|+....+..++..++..+......
T Consensus       317 ~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG--~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         317 ALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGG--LVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777 44688899999999999999999999999  333557899999998888777666554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=4.7e-12  Score=95.80  Aligned_cols=136  Identities=10%  Similarity=0.003  Sum_probs=110.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      +.|.++++.+.+.+...++..+..++.+++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+...+.
T Consensus       234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  313 (382)
T PRK11128        234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA  313 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999888999999999999999999999999999888888777777889999999999999999988888


Q ss_pred             hhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHH
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASI  149 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  149 (172)
                      ...+..+. +++++++..+.++ .....|..++|.+++  ...+..++ ..++..+...+.
T Consensus       314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G--~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSG--FLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccH-HHHHHHHHHHHH
Confidence            88888887 5666788888875 556678889999998  44445565 355544444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.42  E-value=5.1e-12  Score=97.11  Aligned_cols=142  Identities=11%  Similarity=-0.056  Sum_probs=88.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh----ccchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV----CAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~   84 (172)
                      ++.|.+.++.+...+...++..++.++.|+++||+|||+.+.....+..+......    ..++.........+..++.+
T Consensus       272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (432)
T PRK10406        272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS  351 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            45788888888888888888889999999999999999988776554433322111    12233322222222223333


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHH-HHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA-IGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      ...+....+.+|.+|+|.|++++|+.+...+ +.+...|.+.. +..   .-.|...++..+...++..+.
T Consensus       352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~---~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS---IGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHH
Confidence            3345567889999999999999999665444 43445777665 321   112545555544444444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.39  E-value=4.1e-12  Score=97.44  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=94.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhccchhh
Q 041620           14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQSVPL   92 (172)
Q Consensus        14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~   92 (172)
                      ++.+.++......++.+++.++.++++||+|+|+++..+..+.+++.....+. ++.+.+.+..++.|++.+..++...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777778889999999999999999999999999988887777665554 46667777788889999988888889


Q ss_pred             hhhccCC-------ccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           93 YLSEMTT-------PKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        93 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +++|..|       ++++|+..++++....+|..+++.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888865       456788899999999999999999888

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.38  E-value=1.3e-11  Score=96.02  Aligned_cols=146  Identities=8%  Similarity=-0.038  Sum_probs=101.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK-------VSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV   81 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   81 (172)
                      +++|.+..+.+...+...++..++.++.|+++||++||       ........+..+........++.+...+..++.++
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~  360 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI  360 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999875       22223333333333444445566655556666666


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +.+...+....+..+.. +++|++..++.+...++|..++|.+..   ..+..+|+..|++.++..++..+..++.+
T Consensus       361 ~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~---~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        361 FVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF---TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH---hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            66555555666666664 578999999988888888888877643   22234688899888776666655555444

>TIGR00895 2A0115 benzoate transport

Probab=99.38  E-value=4e-12  Score=95.82  Aligned_cols=119  Identities=16%  Similarity=0.110  Sum_probs=98.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      .++.+.++++.+...+...++..++.++.+++.||+|||+......+............++.+...+..++.|++.+...
T Consensus       277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  356 (398)
T TIGR00895       277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQ  356 (398)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999999999999999999999999955544444333333333335667777788899999999999


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +...+++.|.+|+++|++..++.+....+|..++|.+.+
T Consensus       357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999999999999876

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=7.3e-12  Score=93.66  Aligned_cols=152  Identities=22%  Similarity=0.165  Sum_probs=117.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSI-LIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~   82 (172)
                      .|..|+|..+.++..+.+-++++.|+++.||++||.  |||... ++.++...++....-..  +|+++..++.++.|+.
T Consensus       280 ~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         280 SEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999995  666443 33344444444444444  4568888999999998


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccch
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRY  161 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  161 (172)
                      .-+.+-.......|..|++--|++.|+...+..+ |...+....+  ...|.+||...|.+..+.+++..++.......+
T Consensus       360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g--~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG--YIADTWGWDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce--eeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            8777777788889999999999999999888887 7777777655  555668999999888777777666555444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.37  E-value=1.9e-11  Score=93.12  Aligned_cols=141  Identities=12%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             CCCCCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hcc-chhHHHHHHHH----H
Q 041620            8 SNYSKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCA-FNIYMLIFGRL----L   78 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----l   78 (172)
                      .++.|.++++.++...... .+.+++.++.+++.||+|||+.+..+..+..+..+..   ... ++.+.+....+    .
T Consensus       237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  316 (402)
T PRK11902        237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLC  316 (402)
T ss_pred             HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3457899999999876654 5688999999999999999998877766655544332   233 45555555443    4


Q ss_pred             HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .|++.+...+....++.+.+|.+++    ++++...+++...++.+++  ...+..||+..|.+.+..+++..+..
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G--~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        317 GGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSG--YLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            5555666677777777777776554    5555555667665666676  33456799999998877776655443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.36  E-value=1.8e-11  Score=87.04  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------chhHHHHHHHH
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-------FNIYMLIFGRL   77 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~   77 (172)
                      ++.++.+|.|.+|...+.+...+|..+ .++.|.+.||+|++.++.++.+...++......+       .++|.+.+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            456788999999999999999999886 4889999999999999999999999988765543       36778878888


Q ss_pred             HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +.|.+.+..++.......+.+| ++||++.++.-...++++.+-..+..
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~  152 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS  152 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH
Confidence            8888888777887777788887 68999999988888888776655554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.36  E-value=1.3e-11  Score=93.54  Aligned_cols=141  Identities=12%  Similarity=0.004  Sum_probs=103.6

Q ss_pred             CCCCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHhh
Q 041620            9 NYSKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC------AFNIYMLIFGRLLLGV   81 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~   81 (172)
                      +|.|.++++.++...... ....++.++.|++.||+|+|+.+..+..+..+.......      .++.+.......+.++
T Consensus       236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (390)
T TIGR02718       236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL  315 (390)
T ss_pred             HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence            356999999999888776 466778999999999999999988776655332222211      1233344444555666


Q ss_pred             hhhhhccchhhhhhccCCc-cccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           82 GIGFGNQSVPLYLSEMTTP-KYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      +.+..++.......+..++ +++++.+++.+...++|..++|.+++  ...+..|++..|...+...++..
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G--~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG--YLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccHHHHHHHHHHHHHHH
Confidence            7777777788887777776 88999999999999999999999998  33345578888887766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.35  E-value=1.9e-11  Score=92.88  Aligned_cols=118  Identities=10%  Similarity=-0.103  Sum_probs=97.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++.+|.++.+.|...+...++.+++++..+++.||.++|+.+..+.. ..+......+.++.+...+..++.|++.+...
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~  311 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFV  311 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence            45678999999999999999999999999999999999988877753 33434444456677777778888999998888


Q ss_pred             cchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHh
Q 041620           88 QSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +..++.+.|..|+|. ++++.++.+...+++..++..+.+
T Consensus       312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence            888888888766654 799999999999999999988877

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.35  E-value=8.2e-12  Score=96.13  Aligned_cols=150  Identities=13%  Similarity=-0.005  Sum_probs=96.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH---Hhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFL---AGSALGVC--AFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~g~~   82 (172)
                      ++..|.++.+.++......++..++.++.|+++||+++++....+.....   ++......  ..+.+......+..|++
T Consensus       279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  358 (438)
T TIGR00712       279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFL  358 (438)
T ss_pred             HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            34568899999999999999999999999999999965432222322221   11111111  22334333444455544


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIG-LLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      .............|.+|+++|++++++.+....+| ..++|.+.+  ...++.||...+.+.....++..+...+..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       359 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            32222222345779999999999999998877776 468899988  3344557888888766665555554444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.35  E-value=1.4e-11  Score=96.25  Aligned_cols=130  Identities=18%  Similarity=0.024  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchh--HHHHHHHHHHhhhhhhhccchhhhhhccCCcc
Q 041620           24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNI--YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPK  101 (172)
Q Consensus        24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  101 (172)
                      ...+..+++.++.+++.||+|||+.+..+.++.+++.+...+.++.  +......++.+++.+..++....+..|.+|++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            3445667788999999999999999999998888887776665433  44555566677777777888899999999999


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620          102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus       102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      .|++++++.+....+|..++|.+.+  .  +..++...+.+.+...++..+...+.
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY--L--GEKWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH--H--HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999865  1  12245566666666665555544443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.35  E-value=1.5e-11  Score=93.63  Aligned_cols=139  Identities=9%  Similarity=-0.057  Sum_probs=103.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTR-ALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      .++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++..+....++.+.+.+...+.+++.+...+...
T Consensus       240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~  319 (400)
T PRK11646        240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE  319 (400)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence            36678888877777766666655666665 56767777777777777777777778887777778888898888888889


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcc-hHHHHHhhhHHHHHHH
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWG-WRISLAMAAAPASILT  151 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~-w~~~~~~~~~~~~~~~  151 (172)
                      +++.|..|+++|++.+++++....+|..++|.+++ +....+..+ ....+....+..++..
T Consensus       320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998 433322222 2445544444444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.33  E-value=1.8e-11  Score=104.00  Aligned_cols=136  Identities=13%  Similarity=0.037  Sum_probs=112.8

Q ss_pred             CCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            9 NYSKFDSQ-LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         9 ~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      +.+|.+.. +.+++.+...++.++++++.++++||+++++.+.++.++.+++.+......+.+.+++..++.|++.+...
T Consensus       261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  340 (1146)
T PRK08633        261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI  340 (1146)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            45788888 89999999999999999999999999999998888888888777777777788888888999999999988


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAP  146 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~  146 (172)
                      +...+++.+..|++.|++++++.+....+|..+++.++. +..  ...++...+.+.+..
T Consensus       341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Confidence            889999999999999999999999999999888877776 322  123455555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=2.3e-11  Score=92.06  Aligned_cols=147  Identities=10%  Similarity=0.011  Sum_probs=101.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHhhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-AFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      ++..|.++++.++..+...++..++.++.+++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+.+....
T Consensus       227 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  306 (382)
T PRK10091        227 MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFAL  306 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence            3457899999999999999999999999999999999999998888877777655443 445555566666666665444


Q ss_pred             ccchh-hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           87 NQSVP-LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        87 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .+... ....+..+++.++..  ..+....+|..++|.+++ +...  ..+|+..+...+....+.........
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        307 SAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL--GLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             hHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc--ccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            44333 334444444545443  346677899999999998 3321  24688888877666555444333333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.32  E-value=2e-11  Score=92.56  Aligned_cols=149  Identities=11%  Similarity=-0.073  Sum_probs=103.0

Q ss_pred             CCCCCCChhHHHHHH--HHHHHHHHHHHHhh-hhhhhhhchhHHHHHHHHHH-HHhhhhhh---ccch-hHHHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFI--SSLYITGILASLIA-SSVTRALGRKVSILIGGVAF-LAGSALGV---CAFN-IYMLIFGRLLL   79 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~gr~~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~l~   79 (172)
                      .++.|.|.+++|.+.  ....+...+.+|+. ++..||+||||..++.+.+. ........   ...+ ..++.....+.
T Consensus        28 l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (390)
T TIGR02718        28 LREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACA  107 (390)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence            456799999999973  55577787888888 55799999998875555332 21111111   2222 33344455556


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ++..+...+....+..|..++++++...+....+..+|..+++...+  ...+..+||..|++.+...++..+...+..
T Consensus       108 ~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~--~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       108 SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL--VLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            67777777888888888888888888888888888888888887765  334556899999998887766555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=99.31  E-value=1.8e-11  Score=94.35  Aligned_cols=148  Identities=11%  Similarity=0.073  Sum_probs=105.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKV-SILIGGVAFLAGSALGVCAF------NIYMLIFGR   76 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~   76 (172)
                      .+++|+|+.+.|.+.++.-+...+..|+.|+++||    +|||| .++.+....++...+....+      ..+.+.+..
T Consensus        37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~  116 (444)
T PRK09669         37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY  116 (444)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            46789999999999999999999999999999998    77754 45556565555554433332      244555566


Q ss_pred             HHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-h-hcC---CCCcchHHHHHhhhHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKI---KGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~---~~~~~w~~~~~~~~~~~~~~  150 (172)
                      .+.+.+......+..++..|+. ++++|.+..+....+..+|..+++.+.. + ...   .+..+|+..+.+.++...+.
T Consensus       117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            6677777777888889999998 4577998888887777787777765543 1 122   12357888887777666555


Q ss_pred             HHhhh
Q 041620          151 TIGAS  155 (172)
Q Consensus       151 ~~~~~  155 (172)
                      .+..+
T Consensus       197 ~~~~~  201 (444)
T PRK09669        197 FFCCF  201 (444)
T ss_pred             HHHHh
Confidence            44333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.31  E-value=3e-11  Score=94.56  Aligned_cols=130  Identities=13%  Similarity=-0.057  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHhhhhhhhccchhhhhhccCCc
Q 041620           25 LYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF----NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP  100 (172)
Q Consensus        25 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  100 (172)
                      ..++.+++.++.++++||+|||++++.+..+..+.........    +...+....+...++.....+....+.+|.+|+
T Consensus       344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            3456667888999999999999999888877766655444321    111111111111222222345667778999999


Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-------CcchHHHHHhhhHHHHHHHHhh
Q 041620          101 KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-------GWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus       101 ~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +.|+++.++.+....++..++|.+.+ +.....       ..++...+.+.++..++..+..
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999877 322110       2345566777666666554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=99.31  E-value=2.5e-11  Score=92.37  Aligned_cols=138  Identities=9%  Similarity=0.046  Sum_probs=107.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.+.+++..+.......+......++.|++.||+++|+.+..++.+..++.....+. ++.+.+.+..++.|++.+...+
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence            445666777777777777777788899999999999999998988888777666654 5777777888999999988888


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  150 (172)
                      .....+.+..|++.|++..+..+ ...+|..++|.+++  ...++.+....|++.+....+.
T Consensus       318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G--~l~~~~g~~~~~~~~~~~~~~~  376 (395)
T PRK10054        318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSG--VILTTLPPWSLFVILALAIVAA  376 (395)
T ss_pred             hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHH--HHHHHcChhhHHHHHHHHHHHH
Confidence            88889999999999999988755 45589999999998  3334556667776654444333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.30  E-value=2.6e-11  Score=94.15  Aligned_cols=119  Identities=12%  Similarity=0.080  Sum_probs=103.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc----cchhHHHHHHHHHHhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC----AFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~   83 (172)
                      ++.+|.++.+.++......++..+++++.|++.||+|||+.+..+..+.+++......    ..+.+......++.|++.
T Consensus       283 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  362 (485)
T TIGR00711       283 QQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGM  362 (485)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999988888877776552    235566677788899999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +...+.......+..|+++|+++.++++....+|..+++.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  405 (485)
T TIGR00711       363 GCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT  405 (485)
T ss_pred             HHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777788888899999999999999999999999999887

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.30  E-value=4.8e-11  Score=92.71  Aligned_cols=142  Identities=13%  Similarity=0.003  Sum_probs=104.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHH-Hhhhhhhccchh-HHHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-----RKVSILIGGVAFL-AGSALGVCAFNI-YMLIFGRLLL   79 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~   79 (172)
                      .++++|+|+++++...+...+...+- +++|.++||++     ||+.++++.++.. +........++. ....+..++.
T Consensus        52 l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~  130 (468)
T TIGR00788        52 LTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLA  130 (468)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            35678999999999989888888874 45999999997     7777777776663 433333333443 3444478899


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhH---HHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQL---CAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      +++.+....+..++..|..+ |++....+....   ..++|..+++.+++  ...+..+|+..|++.+...++..+
T Consensus       131 ~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G--~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       131 ALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG--PLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH--HHHHhcCcchHHHHHHHHHHHHHH
Confidence            99999999999999999998 655554444433   34579999999988  333556899999888777666543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.29  E-value=3.6e-11  Score=93.98  Aligned_cols=119  Identities=9%  Similarity=-0.059  Sum_probs=103.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~   84 (172)
                      ++..|.|+.+.+.......++..+++++.|++.||+|+|+.+..+.++..++......   .++.+......++.|++.+
T Consensus       287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g  366 (495)
T PRK14995        287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAA  366 (495)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHH
Confidence            4457899999999999999999999999999999999999988888887776655433   2455666778889999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ...+.....+.+..|+++++.+.++++....+|..+++.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        367 SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG  408 (495)
T ss_pred             HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            988889999999999999999999999999999999988877

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.28  E-value=1.1e-10  Score=88.84  Aligned_cols=140  Identities=9%  Similarity=-0.001  Sum_probs=105.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      .+++|.++++.+.......++..++.++.+++.||.+++..+....+.......+....++.+.+.+..++.|++.+...
T Consensus       244 ~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~  323 (394)
T PRK10213        244 MNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVP  323 (394)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence            34678999999999999999999999999999999654443443333333434444455677777888899999999888


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  150 (172)
                      +...+++.+..| +++++..+......++|..++|.+++  ...+..|++..+...+...++.
T Consensus       324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G--~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        324 VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGG--YALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChhhHHHHHHHHHHHH
Confidence            888989999887 55667778888888999999999999  4445567777777765544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.28  E-value=1.9e-10  Score=86.58  Aligned_cols=131  Identities=18%  Similarity=0.226  Sum_probs=96.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~   82 (172)
                      ++++|.++++.+.+.....++..++.++.|++.||+|||+.+..+..+..++.......     ++........++.|++
T Consensus       234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  313 (385)
T TIGR00710       234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIG  313 (385)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999888877776665544432     2344455567788898


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAM  142 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~  142 (172)
                      .+...+.......|..| ++|+++.++++..... |...++.++   ...+..+|...+..
T Consensus       314 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~  370 (385)
T TIGR00710       314 NSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS---LIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH---hccccChHHHHHHH
Confidence            88888888888888876 6789999998776654 555555543   22233345444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.26  E-value=4.4e-11  Score=91.49  Aligned_cols=133  Identities=12%  Similarity=0.021  Sum_probs=89.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-HHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVS-ILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      .+.++.+.+.......++..++.++.|+++||++||+. .........++.......++......+..+.+++.....+.
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAI  353 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhH
Confidence            46778888988999999999999999999999997764 33333344333322222222222222222333333333333


Q ss_pred             hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCc-chHHHHHhhhH
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGW-GWRISLAMAAA  145 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~w~~~~~~~~~  145 (172)
                      ......|.+|+|+|++++++.+....+|..++|.+.+  ...+.. +|+..+.+.+.
T Consensus       354 ~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g--~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       354 FWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG--ILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc--cccccCCCCchhHHHHHH
Confidence            4455678899999999999999999999999999987  444444 48888776544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.24  E-value=1e-10  Score=99.55  Aligned_cols=137  Identities=13%  Similarity=0.062  Sum_probs=107.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--------------------c
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--------------------F   67 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--------------------~   67 (172)
                      ++.+|.++.+.+++.+...++.++++++.|+++||.++++.+..+.++..+..+...+.                    .
T Consensus       253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (1140)
T PRK06814        253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR  332 (1140)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence            34578899999999999999999999999999998877766555554444433322221                    6


Q ss_pred             hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHH
Q 041620           68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAP  146 (172)
Q Consensus        68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~  146 (172)
                      +.+.+.+..++.|++.+...+...+++.+..|+++||+++|+++....+|..+++++.+ +..  ...++...+++.+..
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~--~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA--LGFSIPWIILFIALA  410 (1140)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Confidence            67778888899999999999999999999999999999999999999999999999887 421  123555555554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.24  E-value=2e-10  Score=88.56  Aligned_cols=136  Identities=5%  Similarity=-0.070  Sum_probs=103.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++.+|.++.+.+.....+.++..+++++.+++.||+|||+++..+.++.++......+.++. .......+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999988887776666555554443 23456778899999999


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPAS  148 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~  148 (172)
                      |.......|..|+ +.+.+.++... ...|+.++|.+.+  ...+..| -+..|++..+..+
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G--~l~~~~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMG--FVSDAAGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHH--HHHHhccchHHHHHHHHHHHH
Confidence            9999999999865 45777777654 3356777777766  3334445 6777766444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.23  E-value=4.3e-11  Score=89.55  Aligned_cols=105  Identities=21%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             CCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----------chhHHHHHHHHH
Q 041620           11 SKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----------FNIYMLIFGRLL   78 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l   78 (172)
                      .|.++++.+.+..... ++..++.++.|++.||+|||+.+..+.++.++........           ++.+.+..+.++
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            7889999998887665 6788999999999999999999888887777665544332           345677778889


Q ss_pred             HhhhhhhhccchhhhhhccCCccccccchhhhhHHHH
Q 041620           79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA  115 (172)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  115 (172)
                      .+++.+..++...+++.|.+|+|+|++.++++++..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999877654

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=1.8e-10  Score=84.98  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=101.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.+|.++++.+...+.+..+..++.++.+++.||+|+|+.+..+..+.+++.++....++... ....++.|++.+..+|
T Consensus       171 ~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P  249 (310)
T TIGR01272       171 HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFP  249 (310)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999988888777777655544444332 3456688999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAA  145 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~  145 (172)
                      ...+...+..|++ .+++.++. ....+|+.+.|.+.+  ...|..+.+..+++...
T Consensus       250 ~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G--~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       250 TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQG--SLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHH--HHHHhccchHHHHHHHH
Confidence            9999888888754 45566665 456688999999877  44455577777764433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=2.2e-11  Score=91.11  Aligned_cols=131  Identities=18%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHH-HHH-HHHHHhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSIL-IGG-VAFLAGSALGVC--AFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~   82 (172)
                      +++.|.++++.+...+...++..++.++.+++.||.. ||+... ... ............  ..+.+...+..++.|+.
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  323 (379)
T TIGR00881       244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL  323 (379)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999864 333222 221 112222222222  23555556666777776


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISL  140 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~  140 (172)
                      .....+....+..|..|+++|+++.++.+....+|..++|.+.+  ...+..||+..|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~f  379 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG--YLADGFGWAGAF  379 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH--HHHHhhcccccC
Confidence            65556666778899999999999999999999999999999988  444556777543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.22  E-value=1.9e-10  Score=84.81  Aligned_cols=85  Identities=14%  Similarity=0.229  Sum_probs=76.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +++|+++.|++.+....+....+..++.|.++||+|||+.-+..+++..++++ .-..++++.++++|++.|++....++
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999885 45568999999999999999999888


Q ss_pred             chhhhh
Q 041620           89 SVPLYL   94 (172)
Q Consensus        89 ~~~~~~   94 (172)
                      .-.++.
T Consensus       141 ~FEsW~  146 (354)
T PF05631_consen  141 AFESWM  146 (354)
T ss_pred             HHHHHH
Confidence            766554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.22  E-value=2.8e-10  Score=88.20  Aligned_cols=148  Identities=16%  Similarity=0.005  Sum_probs=96.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH--------HHHHHHHH--HHhhhhhhc-cchhHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVS--------ILIGGVAF--LAGSALGVC-AFNIYMLIFGR   76 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~--------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~   76 (172)
                      ++.+|.+..+.++..+...++..++.++.|+++||+++|+.        +..+....  .+..+.... ..+.+..++..
T Consensus       289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (465)
T TIGR00894       289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL  368 (465)
T ss_pred             HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45678899999999999999999999999999999875421        11111111  111111111 23444444455


Q ss_pred             HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      .+.+.+.+...+.......|..| +.++..+++.+....+|+.++|.+.+ +....+..+|+..|.+.+...++..+...
T Consensus       369 ~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       369 TLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            55555555444545555556665 48999999999999999999999987 32222223588899888777666655444


Q ss_pred             h
Q 041620          156 D  156 (172)
Q Consensus       156 ~  156 (172)
                      .
T Consensus       448 ~  448 (465)
T TIGR00894       448 I  448 (465)
T ss_pred             e
Confidence            3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.21  E-value=8.2e-11  Score=87.36  Aligned_cols=115  Identities=23%  Similarity=0.323  Sum_probs=99.2

Q ss_pred             CCCCCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhh
Q 041620            8 SNYSKFD-SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~   83 (172)
                      ++++|.+ ..+.+.......+...++.++.|++.||+++|+..........+........   ++........++.|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  313 (352)
T PF07690_consen  234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF  313 (352)
T ss_dssp             CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5667888 7899999999999999999999999999998887777777666666555443   45577777888899999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSAN  122 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  122 (172)
                      +...+....++.|..|+|+|++..++.+...++|..++|
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.20  E-value=2.6e-10  Score=88.06  Aligned_cols=119  Identities=10%  Similarity=0.102  Sum_probs=94.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~   85 (172)
                      ++.+|.++...++......++.+++.++.+++.||+|+|+.+..+.++.+++.+...+.  ++.+...+..++.|+|.+.
T Consensus       256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~  335 (448)
T PRK09848        256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV  335 (448)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence            34566666655555555567788899999999999999999999988888777666554  3567777778889999999


Q ss_pred             hccchhhhhhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..+...+..+|..|.+       ++|..+++++....+|..+++.+.+
T Consensus       336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888754       3588889999999999999988877

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.20  E-value=9.4e-10  Score=83.42  Aligned_cols=116  Identities=13%  Similarity=0.069  Sum_probs=76.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++++|.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.....+.++.+.......+.+.+.+...
T Consensus       231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  310 (392)
T PRK10473        231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF  310 (392)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999988888777766665554444444444444443333


Q ss_pred             cchhhhhhccCCccccc-cchhhhhHHHHHHHHHHHHHH
Q 041620           88 QSVPLYLSEMTTPKYRG-TFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      +.  ....+..|.++|+ .+.++......+|..+++.+.
T Consensus       311 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        311 GV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             HH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            22  2334455555543 333334444444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.4e-10  Score=86.69  Aligned_cols=152  Identities=14%  Similarity=0.040  Sum_probs=112.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------chhHHHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-------FNIYMLIFGRLLL   79 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~   79 (172)
                      .+++++.++.+.+.......+...+..+..|+++||+|.+|++......+++........       .+....+...+..
T Consensus       245 ~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l  324 (417)
T COG2223         245 LVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL  324 (417)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999988888877766554       3444444444444


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +++.|..+......+...+|+ +-|.+.|+.....++|+..-|..-+ ......  .++..|++.....++..+......
T Consensus       325 ~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         325 FVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455556666666643 6688899999999999888887766 333332  488899888887777776655555


Q ss_pred             cch
Q 041620          159 YRY  161 (172)
Q Consensus       159 ~~~  161 (172)
                      .|+
T Consensus       402 ~r~  404 (417)
T COG2223         402 ARR  404 (417)
T ss_pred             Hhc
Confidence            444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=1.1e-10  Score=86.32  Aligned_cols=132  Identities=14%  Similarity=-0.000  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCcccc
Q 041620           24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYR  103 (172)
Q Consensus        24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r  103 (172)
                      +..+.-..|.++.+++.||+|||+.+-...+++++..++...+.+-....+..+..-++..+.+.+.+.|..|.+|++.|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            34567788999999999999999999999999999888777664333333444444455555677899999999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620          104 GTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus       104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      +++.|..+....+|++++|+++-  ....  +-..+..+.+..+++..+...+++.
T Consensus       469 atgvGtcSsmaRIggI~~p~iA~--~~e~--s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIAM--RAEL--STSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHHH--Hhcc--ceeehHHHHHHHHHHHHHHheeeee
Confidence            99999999999999999999975  1111  1223444445555555555555553

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.19  E-value=1.8e-10  Score=87.25  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=120.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhh
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPL   92 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~   92 (172)
                      .+++..|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=..+++++++.+.+.+.+.+.++..+.......-
T Consensus       256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk  335 (412)
T PF01306_consen  256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788888878888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620           93 YLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYR  160 (172)
Q Consensus        93 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  160 (172)
                      |+++.+|+|..++...+ ++....+|..+.+.+++  ...|+.|.+..|++.+...+...++..+..++
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G--~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG--YLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH--hhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            99999999998888888 57888899999888888  55577789989988777766655555554433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.18  E-value=2.7e-10  Score=87.53  Aligned_cols=148  Identities=15%  Similarity=0.165  Sum_probs=116.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhh-cc---c-hhHHHHHHHHHHhhhh
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGV-CA---F-NIYMLIFGRLLLGVGI   83 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~l~g~~~   83 (172)
                      |.+-+.+..|++.+...++..++++.+|++++|.+. |+.++.+.++.++++.+.. ..   + ..+.+.++|++.|+|.
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV  144 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence            477788999999999999999999999999999996 8888999999999998873 32   3 5788899999999998


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCC---------c-chHHHHHhhhHHHHHHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGG---------W-GWRISLAMAAAPASILTI  152 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~---------~-~w~~~~~~~~~~~~~~~~  152 (172)
                      +. ....-.|+++....++|.++++....+..+|..+||.+.. +..+.+.         + -+..+-++.++..++.++
T Consensus       145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v  223 (488)
T KOG2325|consen  145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV  223 (488)
T ss_pred             cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence            75 7778899999988999999999998888889999988876 4332211         1 134455566666665555


Q ss_pred             hhhhhc
Q 041620          153 GASDWW  158 (172)
Q Consensus       153 ~~~~~~  158 (172)
                      ...+..
T Consensus       224 ~i~~~f  229 (488)
T KOG2325|consen  224 IILFFF  229 (488)
T ss_pred             HHHhhe
Confidence            544444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.18  E-value=4.3e-10  Score=87.44  Aligned_cols=119  Identities=4%  Similarity=-0.046  Sum_probs=103.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----------chhHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----------FNIYMLIFGRL   77 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~   77 (172)
                      ++..|.++++.|.......++.+++....+++.+|++.|+++.++.++.+++.......          ++.+......+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            35789999999999999999999999999999999999999999999888876543211          33344556678


Q ss_pred             HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +.+++.+..+.+...++++..|++++++..+++++..++|..+++.+++
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999998887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00896 CynX cyanate transporter

Probab=99.18  E-value=2.3e-10  Score=85.63  Aligned_cols=116  Identities=11%  Similarity=0.025  Sum_probs=90.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.|.|+++.+...+...++.++++++.|+++||+ +||+.+..+..+.+++.....+.++.... ....+.|++.+..++
T Consensus       226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~  304 (355)
T TIGR00896       226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFP  304 (355)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhH
Confidence            4688999999999999999999999999999999 56667777777777766655554433222 245678999988888


Q ss_pred             chhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           89 SVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        89 ~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .....+.+..+ +++++...++.+....++..++|.+.+
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G  343 (355)
T TIGR00896       305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG  343 (355)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776665554 566788889888888889999999988

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.15  E-value=2.3e-09  Score=80.69  Aligned_cols=117  Identities=13%  Similarity=0.080  Sum_probs=82.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---c-cchhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---C-AFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~g~~~~   84 (172)
                      +++|.++++.++......++..++.++.+++.||+|||+.+..+..+..+......   . ..+.+...+...+.+.+.+
T Consensus       223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T PRK11102        223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS  302 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999998888766444332221   1 2344444444445555555


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHH-HHHHHHHHHHHHh
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLC-AAIGLLSANLLNC  126 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~  126 (172)
                      .........+.|..| ++|++..++.+.. ..+|..+++.++.
T Consensus       303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        303 MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555666777765 7899999986554 4567777777654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.7e-10  Score=90.23  Aligned_cols=149  Identities=13%  Similarity=0.045  Sum_probs=127.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+..+.++++...+.++..+...++.++.|+++|+..  ++.+..++.+..+++.....+.++++.++..-.+.|++.|.
T Consensus       325 ~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~  404 (509)
T KOG2504|consen  325 AKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGS  404 (509)
T ss_pred             HhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999988  55667777777788888888999999999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHhhhhhc
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ........+.|..+.++-..+.|+...+..++..++|.+++  ...+..+ |...|+..++..++.....+..+
T Consensus       405 ~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag--~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  405 FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG--LLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce--eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            88888889999999999999999999999999999999998  3333333 88888888887776665444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.14  E-value=1.6e-10  Score=88.72  Aligned_cols=153  Identities=17%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHH-HHHHHHHHHHhhhhhhcc-c-------hhHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGRKVS-ILIGGVAFLAGSALGVCA-F-------NIYMLIF   74 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr~~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~~~   74 (172)
                      .+..++++...+.+....-+...+..|+.|+++|    |+||||. ++.+....+++..++... +       ....+.+
T Consensus        29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~  108 (428)
T PF13347_consen   29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV  108 (428)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence            4567999999999999999999999999999999    8997765 445667777776665544 2       2234466


Q ss_pred             HHHHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-hh-cCCCC---cchHHHHHhhhHHHH
Q 041620           75 GRLLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KIKGG---WGWRISLAMAAAPAS  148 (172)
Q Consensus        75 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~---~~w~~~~~~~~~~~~  148 (172)
                      ..++..++....+....++..|..+ +++|.+..+.-+.+..+|..+...+.. +. ...+.   .+|++...+.+++.+
T Consensus       109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~  188 (428)
T PF13347_consen  109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL  188 (428)
T ss_pred             HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence            6777789999999999999999998 468999999988888888866655555 22 22221   279998888887777


Q ss_pred             HHHHhhhhhccc
Q 041620          149 ILTIGASDWWYR  160 (172)
Q Consensus       149 ~~~~~~~~~~~~  160 (172)
                      +..+...+..++
T Consensus       189 v~~~i~~~~~ke  200 (428)
T PF13347_consen  189 VFFLITFFFVKE  200 (428)
T ss_pred             HHhhhhhheeee
Confidence            665554444443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=7.6e-10  Score=86.16  Aligned_cols=147  Identities=16%  Similarity=0.107  Sum_probs=101.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhch-hHHHHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGR-KVSILIGGVAFLAGSALGVCAF------NIYMLIFGR   76 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~   76 (172)
                      ++..|+++...|.+..+.-+...+..|+.|+++|    |+|| |+.++.+....+++..++...+      .+..+.+..
T Consensus        34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~  113 (473)
T PRK10429         34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY  113 (473)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            4567999999999999999999999999999999    6698 4556667666666654443322      133444555


Q ss_pred             HHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-h-hcC---CCCcchHHHHHhhhHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKI---KGGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~---~~~~~w~~~~~~~~~~~~~~  150 (172)
                      .+.+++.........++..|.. ++++|.+..+.-..+.++|+.+.+.+.. + ...   .+..+|+....+.++..++.
T Consensus       114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~  193 (473)
T PRK10429        114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS  193 (473)
T ss_pred             HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            6678888888889999999998 5888999888866666666555544432 1 111   12235777666666655544


Q ss_pred             HHhh
Q 041620          151 TIGA  154 (172)
Q Consensus       151 ~~~~  154 (172)
                      .+..
T Consensus       194 ~~~~  197 (473)
T PRK10429        194 TIIT  197 (473)
T ss_pred             HHHH
Confidence            4333

>PRK11043 putative transporter; Provisional

Probab=99.14  E-value=3.8e-09  Score=80.37  Aligned_cols=117  Identities=9%  Similarity=-0.105  Sum_probs=88.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hc--cchhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VC--AFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~g~~~   83 (172)
                      ++.|.++++.++......++..++..+.+++.||+|+|+..........+.....   ..  .++.+.......+.|++.
T Consensus       231 ~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (401)
T PRK11043        231 EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAAN  310 (401)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            3468899999988888888889999999999999999987655544444333221   11  244555556667788888


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +..++.......|..| ++|+++.++++.....+...++.+.+
T Consensus       311 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g  352 (401)
T PRK11043        311 GAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS  352 (401)
T ss_pred             HHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777777775 67999999999887778788888777

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=7e-10  Score=79.67  Aligned_cols=143  Identities=11%  Similarity=0.041  Sum_probs=105.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA-FLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .++++|+|+...+.+.+.......+.+++.|.++||+|++...+.+..+ ...+.....+  +.+.-+....++|+....
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl  368 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL  368 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence            3678999999999999999999999999999999999999776665443 3344433333  233334566778888887


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHH-HhhhHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISL-AMAAAPASILT  151 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~-~~~~~~~~~~~  151 (172)
                      .-......++...|+++-|++.+..++..++|-.+.|.+++ +....+.+.|--.| .+.+..++...
T Consensus       369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv  436 (459)
T KOG4686|consen  369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV  436 (459)
T ss_pred             HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            76667888899999999999999999999999999999999 43333323344444 44444444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=3e-09  Score=80.33  Aligned_cols=135  Identities=8%  Similarity=0.001  Sum_probs=87.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch---hHHHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGR---KVSILI-GGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      .+.+.+ .+.......+...++   .++++||..|   |+.... ..+..++.........+.+...+...+.+++....
T Consensus       222 ~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (368)
T TIGR00903       222 AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPA  297 (368)
T ss_pred             CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhh
Confidence            345544 455555555544444   4677777654   333232 33333443334444444444455566677777777


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+...++.+|.+|+|.|++++|+.+....+|+..+|.+.+ ..   .  +.+..|.+.++..++..+..
T Consensus       298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~---~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI---S--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh---c--CHHHHHHHHHHHHHHHHHHH
Confidence            7778889999999999999999999999999999988877 33   1  55666766666666555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.08  E-value=5.8e-09  Score=79.54  Aligned_cols=113  Identities=13%  Similarity=0.076  Sum_probs=88.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      ++.|+|.+|+|.+.+...+..+++++++|+++||.+ +|+.+.+..++.++..+.....++++.+....++..+......
T Consensus        30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~  109 (400)
T PF03825_consen   30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTM  109 (400)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHH
Confidence            457899999999999999999999999999999986 5777777777777766666677888888888888888887778


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL  123 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  123 (172)
                      +...++..+...  +++.-.|-.-...++|..++..
T Consensus       110 pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~  143 (400)
T PF03825_consen  110 PLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAAL  143 (400)
T ss_pred             HHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHH
Confidence            888888777765  3344455555566666665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=2.2e-09  Score=82.86  Aligned_cols=138  Identities=12%  Similarity=-0.059  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-c-----chhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620           23 SSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-A-----FNIYMLIFGRLLLGVGIGFGNQSVPLYLSE   96 (172)
Q Consensus        23 ~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~   96 (172)
                      ....+...+..++.|+++||+|+|+++.++.+...+....... .     .+++.+.+..+...++.|..+.....++.+
T Consensus       293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~  372 (462)
T PRK15034        293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV  372 (462)
T ss_pred             HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence            3345677888999999999999999999888777666543221 1     245655555555445555555556666666


Q ss_pred             cCCc---------------------cccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           97 MTTP---------------------KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        97 ~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+|+                     ++-|.+.|+......+|+.+.|.+-+ .....+  ++...|+......++..+..
T Consensus       373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH
Confidence            6653                     13456677788888888888886655 322222  47777877777766666665


Q ss_pred             hhhccchh
Q 041620          155 SDWWYRYS  162 (172)
Q Consensus       155 ~~~~~~~~  162 (172)
                      ++.+.|+.
T Consensus       451 w~~y~r~~  458 (462)
T PRK15034        451 WLVYGRRK  458 (462)
T ss_pred             HHHhccCC
Confidence            55554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.07  E-value=2.6e-09  Score=82.50  Aligned_cols=148  Identities=13%  Similarity=0.072  Sum_probs=106.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chh--HH---HHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNI--YM---LIFGRLLL   79 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~--~~---~~~~~~l~   79 (172)
                      ++.|++.++..+.+....+...+.++++.++.||.|||+.++.++.++.+....+...    ...  |.   .+++.++.
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF  377 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999888877665543    111  22   23334444


Q ss_pred             hhhhhh-hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           80 GVGIGF-GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        80 g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .++.+. ..|...-+.+|.+|++.|..+++.......+...+......  ...+..|- +.|++..+++.+..+..++..
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp--~l~~~~g~-~~filF~i~~~~~~i~~~~~l  454 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP--PLQNVIGP-YVFILFVIPLAIFLIYLYRYL  454 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence            333333 36778889999999999999999987777777666655544  22222232 567777777776666555544


Q ss_pred             c
Q 041620          159 Y  159 (172)
Q Consensus       159 ~  159 (172)
                      |
T Consensus       455 P  455 (485)
T KOG0569|consen  455 P  455 (485)
T ss_pred             c
Confidence            4

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.06  E-value=3.9e-09  Score=80.45  Aligned_cols=141  Identities=15%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHH----HHHHhhhhhhhc
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFG----RLLLGVGIGFGN   87 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~l~g~~~~~~~   87 (172)
                      .+.+..+...+...++-++.-...+++..|+|.|+++.++.+..++=..+.... ++.+...+.    ..+.|+..+...
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            556666766677677777888899999999999999999999998887777766 555444333    456899999999


Q ss_pred             cchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh-hhcCCC---CcchHHHHHhhhHHHHHHHHh
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC-TQKIKG---GWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~---~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      .....++.+..|++.|+++.++++. ..++|..++..+++ +.....   .+.|...+.+.+...++..++
T Consensus       320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999766 46789999999998 322111   123445555555544444433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.03  E-value=5.1e-09  Score=75.40  Aligned_cols=132  Identities=30%  Similarity=0.359  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHhhhhhhhccchhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN--IYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      .+.++..+...++..++.++.|++.||+|||+.+..+......+.+...+..+  .+.+.+.|+..|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            47888889999999999999999999999998888887665555555555554  8889999999999999999999999


Q ss_pred             hhccCCc-cccccchhhhhH-HHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620           94 LSEMTTP-KYRGTFNIGFQL-CAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS  148 (172)
Q Consensus        94 ~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~  148 (172)
                      +.|..|+ ++|+...+.... ....|..++|.+++ +... ...+|+..+........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  175 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            9999988 678888888777 57788888887776 3333 55689987766555443

>PRK09669 putative symporter YagG; Provisional

Probab=99.02  E-value=5.4e-09  Score=80.73  Aligned_cols=111  Identities=17%  Similarity=0.169  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-c-cchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-C-AFNIYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      +..+.+.....+..+++.++.++++||+|+|+.+..+.+..++...... . .++.+.+.+..++.|++.+...+...++
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556677888999999999999999999888766554333222 2 3567777888889999999999999999


Q ss_pred             hhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620           94 LSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        94 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ++|..|.+       ..|...+.++....+|..+++.+++
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988622       2244567788888899999998887

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.01  E-value=7.2e-09  Score=80.71  Aligned_cols=113  Identities=10%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHhhhhhhhcc
Q 041620           14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +++..+.+.+...++.+++.++.++++||+|+|+.+..+..+.+++.+....     .++.+.+++..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777888999999999999999999998888776655544322     34566777778888999998888


Q ss_pred             chhhhhhccCCc-------cccccchhhhhHHHHHHHHHHHHHHh
Q 041620           89 SVPLYLSEMTTP-------KYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        89 ~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ...++++|..|.       +..|...+.......+|..+++.+.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999762       22344677888888899999888877

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.01  E-value=5.6e-09  Score=80.28  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhccchhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      +..+.......++..++.++.++++||+|+|+.+..+.++.+++.+...+.+  |.+.+++..++.|++.+..+....++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5667777788899999999999999999999999999999999888877764  89999999999999999999999999


Q ss_pred             hhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620           94 LSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        94 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ++|..+.+       +.|..++.++....++..+++.+.+
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            99998733       3467788888888888888888776

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.98  E-value=3.1e-08  Score=79.67  Aligned_cols=147  Identities=17%  Similarity=0.198  Sum_probs=112.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc--------hhHHHHHHHHHH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF--------NIYMLIFGRLLL   79 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~   79 (172)
                      +.+|.+.+....+...+....-+...+.|+++|+ +||++.+..+.++..++..+..+..        .....+++..+.
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            4578888888877777777777888999999996 6999999999999888887766531        123356677888


Q ss_pred             hhhhhhhccchhhhhhccCCccc---cccchhhhhHHHHHHHHHHHHHHh-hhcC----CCCcchHHHHHhhhHHHHHHH
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKY---RGTFNIGFQLCAAIGLLSANLLNC-TQKI----KGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~-~~~~----~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      .+|.|..-+...+...|.+++++   |.....+++.+.++|+.+++.+.. +...    .+..+|...|.+.++..++..
T Consensus        96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~  175 (654)
T TIGR00926        96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL  175 (654)
T ss_pred             HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence            89999999999999999997643   556777788888999998888866 4311    123479999998888777665


Q ss_pred             Hhhh
Q 041620          152 IGAS  155 (172)
Q Consensus       152 ~~~~  155 (172)
                      +...
T Consensus       176 lvf~  179 (654)
T TIGR00926       176 IVFM  179 (654)
T ss_pred             HHHH
Confidence            5443

>PRK11462 putative transporter; Provisional

Probab=98.97  E-value=1.7e-08  Score=78.49  Aligned_cols=146  Identities=12%  Similarity=0.051  Sum_probs=104.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHH-HHHHHHHHhhhhhhccch------hHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSIL-IGGVAFLAGSALGVCAFN------IYMLIFGR   76 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~   76 (172)
                      .+..|+++...|.+..+.-+.-.+..|+.|+++||    +||||..+ ++....+++.+++...++      ...+.+.-
T Consensus        37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~  116 (460)
T PRK11462         37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY  116 (460)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            35678999999999998889999999999999996    78876544 555666666554443321      33455556


Q ss_pred             HHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-h-hcCC---CCcchHHHHHhhhHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKIK---GGWGWRISLAMAAAPASIL  150 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~---~~~~w~~~~~~~~~~~~~~  150 (172)
                      .+..++.........++..|..+ +|+|.+..+....+..+|..+++.+.. + ....   +..+|+....+.+++.++.
T Consensus       117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~  196 (460)
T PRK11462        117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM  196 (460)
T ss_pred             HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            66788888888899999999987 688999999988888888777766654 2 1221   1236777776666655544


Q ss_pred             HHh
Q 041620          151 TIG  153 (172)
Q Consensus       151 ~~~  153 (172)
                      ...
T Consensus       197 ~~i  199 (460)
T PRK11462        197 LAF  199 (460)
T ss_pred             HHH
Confidence            433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.97  E-value=3.4e-08  Score=75.00  Aligned_cols=117  Identities=13%  Similarity=-0.000  Sum_probs=89.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH-Hhhhhhhc--cchhHHHHHHHHHHhhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFL-AGSALGVC--AFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +.+|.++.+.++......++..+++++.+++.||++++........... +.......  ..+.+.+....++.|++.+.
T Consensus       236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  315 (394)
T PRK11652        236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM  315 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            3478899999998888888999999999999999984433322222222 22122221  24566677788899999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..+....+..|..| +++++..++.+....+|..+++.+++
T Consensus       316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999886 67899999999999999999999987

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.95  E-value=1.6e-08  Score=78.92  Aligned_cols=137  Identities=12%  Similarity=0.023  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhch-----hHHH--HHHHHHHHHhhhhhhc---------cchhHHHHHHHHHHhh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGR-----KVSI--LIGGVAFLAGSALGVC---------AFNIYMLIFGRLLLGV   81 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~   81 (172)
                      .+++.+.+.+..++.+++..++..|.+|     +...  .++.++.+++.....+         ..|++++++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5677777777777777775544333333     3333  6677777777666553         3688999999999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      |.....+....++.|..|++.|++.++++.....+|..+++.+..  ...+..+|...|...++..++..++...
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT--FGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988876  2223346777776666665555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.92  E-value=2.3e-08  Score=78.49  Aligned_cols=134  Identities=11%  Similarity=-0.020  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHhh----hhhhhhhchhHHHHHHHHHHHHhhhhhhccch---------hHHHHHHHHHHhhhhh
Q 041620           18 LTTFISSLYITGILASLIA----SSVTRALGRKVSILIGGVAFLAGSALGVCAFN---------IYMLIFGRLLLGVGIG   84 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~----g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~   84 (172)
                      .++..+.+.+..++..++.    +++.||.++.+.+.++.++.+++.+......+         .++.+...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4444555555555555555    66666666667888888888888877655533         4678889999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh--cC-C----CCcchHHHHHhhhHHHHHHH
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ--KI-K----GGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~--~~-~----~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ...+....++.+..|++.|++.+|++.....+|..++..+.. ..  .. .    ...+....|...++..++..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA  472 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777777777766653 11  00 0    01135677766666555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=2.7e-08  Score=75.39  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=96.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------chhH--HHHHHHHHHh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------FNIY--MLIFGRLLLG   80 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~g   80 (172)
                      +.|+ +.+..-|...++.+.++...+.+-|+.||+|-|...+++..+.+++..+-..+      +.++  ....+..+.+
T Consensus        73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa  151 (480)
T KOG2563|consen   73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA  151 (480)
T ss_pred             HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence            4455 77778899999999999999999999999999999999999999999876554      2344  6667788888


Q ss_pred             hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..+-.....-.-...-|+++++|..+..+-.++..+|.+++.++..
T Consensus       152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp  197 (480)
T KOG2563|consen  152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP  197 (480)
T ss_pred             HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence            8777666665677788899999999999988887888888877766

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.90  E-value=1.6e-09  Score=83.45  Aligned_cols=146  Identities=13%  Similarity=0.058  Sum_probs=120.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccch
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      .+-.+..-|........+-++.-++.+++.+|+|+-+++..++....+=........|.|+.+..-+++|+..+..+..+
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            33444444545555566778888999999999999999999999998888888888999999999999999999999999


Q ss_pred             hhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           91 PLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ..|++...|++.|.++.++.+ ...++|-.+|.++++  ...+.++-|..|.+.++.+++.++....+.
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG--~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGG--FVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhh--hhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999954 456788889999988  555567888899988888877666554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.6e-08  Score=73.63  Aligned_cols=149  Identities=13%  Similarity=0.068  Sum_probs=112.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccchh-HHHHHHHHHHhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFNI-YMLIFGRLLLGVGIG   84 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~   84 (172)
                      +-.|.|+|+++.|++.+...+.+...++....+.+|.. +|+.......++.++...+.+.+.- +.+.  .+++|+|.|
T Consensus       234 ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G  311 (395)
T COG2807         234 ILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQG  311 (395)
T ss_pred             HHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccc
Confidence            44678999999999999999999999999999999764 6677777777777777776665422 2222  589999999


Q ss_pred             hhccchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ..++...+++.+..++.+ -++-.++.+...++=..++|.+.+ +....+  +|+...+......+...+.-+..-+
T Consensus       312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         312 GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhhcch
Confidence            999999999998876544 455567778888888889999988 443333  6888887766666655554443333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.86  E-value=5e-08  Score=76.36  Aligned_cols=137  Identities=12%  Similarity=0.029  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhchhHH-------HHHHHHHHHHhhhhh-----hc-----cchhHHHHHHHHHHhh
Q 041620           19 TTFISSLYITGILASLIASSVTRALGRKVS-------ILIGGVAFLAGSALG-----VC-----AFNIYMLIFGRLLLGV   81 (172)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~-------~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~l~g~   81 (172)
                      .++.+.+.+..++.+++.+++.||.++|+.       +.++.++.+++.+..     ..     ..+.+++...-++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            344555566777889999999999998863       666666666554321     11     1356777788999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-------CcchHHHHHhhhHHHHHHHHh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-------GWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-------~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      |.+...+....++.+..|++.++.++++++....+|..++..++. .....+       ...+.+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988875 211010       112455666656555544444


Q ss_pred             hh
Q 041620          154 AS  155 (172)
Q Consensus       154 ~~  155 (172)
                      .+
T Consensus       472 ~~  473 (489)
T PRK10207        472 MA  473 (489)
T ss_pred             HH
Confidence            33

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.83  E-value=9.4e-09  Score=77.03  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=80.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc--cc--hhHHHHHHHHHHhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC--AF--NIYMLIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~g~~~   83 (172)
                      ++.+|.++.+.+.......+...++.++.|+++||+|||+.+..+......+......  .+  +.+.......+.+++.
T Consensus       253 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (366)
T TIGR00886       253 KDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFS  332 (366)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999999999988877776655555444332  22  5555555555555555


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIG  117 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  117 (172)
                      +...+.......|..| ++|++.+|+.+...++|
T Consensus       333 g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       333 GAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             ccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            6556667777778776 68999999987766554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.81  E-value=3.5e-08  Score=76.35  Aligned_cols=129  Identities=15%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhh--hhhhccchhhhhhccCCcc
Q 041620           24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVG--IGFGNQSVPLYLSEMTTPK  101 (172)
Q Consensus        24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~~~~~  101 (172)
                      ...+...+.++..|.++||+|||..+....+...+..+...+..  |++++   +.++.  .....+...++++|...++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence            44677788999999999999999999999988888776666555  33333   44432  3345777889999999999


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620          102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus       102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      +|....++.+.....+..++|.+++  ......|.-..+.+..+..++..+...+..+
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~--~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGG--YLVKFLGIALVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999988  3223356777888877776666555444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.80  E-value=8.5e-08  Score=73.51  Aligned_cols=131  Identities=8%  Similarity=-0.084  Sum_probs=93.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.+....+...+....+..+|.++.+++.||+++|+++.......++.+++....++... .....+.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            344444455566666788899999999999999999998888888888777777666443 5667788888888899999


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC--Cc-chHHHHHhhhH
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG--GW-GWRISLAMAAA  145 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~--~~-~w~~~~~~~~~  145 (172)
                      ....+..+++.+.....+...  .+|+.+.|.+.+ +....+  +. +.+..|++...
T Consensus       344 sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~  399 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL  399 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence            999999986665434444333  389999999988 432110  11 36677766433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.80  E-value=7.9e-10  Score=87.08  Aligned_cols=153  Identities=18%  Similarity=0.127  Sum_probs=3.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----c--------------
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----F--------------   67 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~--------------   67 (172)
                      .++++++++.++.|++.+.+-++..+..++..++.+|..|-|.+-++.++.+++++++.+-    +              
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            4789999999999999999999999999999999999888888888888888887665421    0              


Q ss_pred             --------------------------------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHH
Q 041620           68 --------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA  115 (172)
Q Consensus        68 --------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  115 (172)
                                                      -+..++++.++.|+|....++...+|+-|..++++-+...|+.+....
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                                            124567789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-hhcC-CC--------------Cc----chHHHHHhhhHHHHHHHHhhhhhc
Q 041620          116 IGLLSANLLNC-TQKI-KG--------------GW----GWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus       116 ~g~~~~~~~~~-~~~~-~~--------------~~----~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +|.++|-++++ +... .|              +.    .|..-|++.+...++..+..+.++
T Consensus       188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99988888887 3221 10              01    266677777777666666655555

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.78  E-value=7.8e-08  Score=63.75  Aligned_cols=114  Identities=24%  Similarity=0.203  Sum_probs=91.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.++..--...++......+++++.+.+.+++|.|+.++++.+...+-.+.. +-++.+.++.+..+.|++.+..++...
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence            3444333344566667778888999999999999999999998887654433 456778889999999999999999999


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .++.+..++++|++-.+++-.....+..+|.++..
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877777777777777654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK09848 glucuronide transporter; Provisional

Probab=98.77  E-value=1.7e-07  Score=72.46  Aligned_cols=119  Identities=14%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh----chhHHH-HHHHHHHHHhhhhhh-----ccc--hhHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL----GRKVSI-LIGGVAFLAGSALGV-----CAF--NIYMLIFG   75 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----gr~~~~-~~~~~~~~~~~~~~~-----~~~--~~~~~~~~   75 (172)
                      ++..|+++.+.|.+.+...+...+..++.|+++||.    ||||.. ..+.+...+......     ...  ..+...+.
T Consensus        36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (448)
T PRK09848         36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT  115 (448)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence            456789999999999999999999999999999996    777654 444443433333221     111  22334445


Q ss_pred             HHHHhhhhhhhccchhhhhhccCCc-cccccchhhhhHHH-----HHHHHHHHHHHh
Q 041620           76 RLLLGVGIGFGNQSVPLYLSEMTTP-KYRGTFNIGFQLCA-----AIGLLSANLLNC  126 (172)
Q Consensus        76 ~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-----~~g~~~~~~~~~  126 (172)
                      ..+.+++.+...+...++..|..++ ++|.+..+.-..+.     .++..++|.+..
T Consensus       116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888887877654 67887766654432     345555666654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.77  E-value=5.5e-07  Score=67.82  Aligned_cols=147  Identities=16%  Similarity=0.116  Sum_probs=121.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTR-ALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~   82 (172)
                      -.+.+|++..+...++.....|..++-...|++.. |.++|+...+++...+++......   ..+.+.+....++.|++
T Consensus       235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g  314 (403)
T PF03209_consen  235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG  314 (403)
T ss_pred             hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            34678999999999999999999999999998887 678888888888888777655443   36788999999999999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc----CC---CCcchHHHHHhhhHHHHHHHHh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK----IK---GGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~----~~---~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      .|.......+.+.+..++++.|..+|.+.....++..++..+++ +..    ..   ...+|...|.+.++..++...+
T Consensus       315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888888887 321    11   3346888888887776655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=2.4e-07  Score=71.32  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=113.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHH-HHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVS-ILIGGVAFLAGSALGVCAF------NIYMLIFGR   76 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~   76 (172)
                      .+..|+++...|.+..+.=+--.+..|+.|.++||    +||+|. ++.+.+..++.+.++..++      +.....+.-
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY  119 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY  119 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence            46788999999988888888888999999999995    786654 5566677777766666554      345566778


Q ss_pred             HHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-h-hcCCC---CcchHHHHHhhhHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKIKG---GWGWRISLAMAAAPASIL  150 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~---~~~w~~~~~~~~~~~~~~  150 (172)
                      .+.++++...+.+..++..|+.+ +++|.+..+.-+.+.++|..+...+.. + ....+   ..||+....+.++...+.
T Consensus       120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~  199 (467)
T COG2211         120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence            88899999999999999999986 678999999988888888766655554 2 12221   457888887777776666


Q ss_pred             HHhhhhhccc
Q 041620          151 TIGASDWWYR  160 (172)
Q Consensus       151 ~~~~~~~~~~  160 (172)
                      .+..++..++
T Consensus       200 ~l~~~~~v~E  209 (467)
T COG2211         200 LLFCFFNVKE  209 (467)
T ss_pred             HHHHHHHhhc
Confidence            6555544433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.75  E-value=3.7e-08  Score=72.77  Aligned_cols=93  Identities=12%  Similarity=0.004  Sum_probs=75.0

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC--C---------
Q 041620           65 CAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK--G---------  132 (172)
Q Consensus        65 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~--~---------  132 (172)
                      ..++++.+++..++.|.|.+..++..+.++++..|+|++.+.+++.+.++++|..++|.+++ +....  +         
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999998 43221  1         


Q ss_pred             --CcchHHHHHhhhHHHHHHHHhhhhh
Q 041620          133 --GWGWRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus       133 --~~~w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                        ...|+++|++.+....+..+...+.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              1368999986655544444433333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.72  E-value=1.1e-07  Score=72.30  Aligned_cols=144  Identities=20%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH--hhhhh-hcc----chhH-HHHHHHHHHh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLA--GSALG-VCA----FNIY-MLIFGRLLLG   80 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~--~~~~~-~~~----~~~~-~~~~~~~l~g   80 (172)
                      ++.|+|.+++|.+.+...+...+.+|+.|.++||.|.||-++.......+  +.+.. .+.    .|.+ ..++.....|
T Consensus        36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~  115 (412)
T PF01306_consen   36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG  115 (412)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999977665544433222  22111 111    2332 2223333344


Q ss_pred             hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +......+..-+++.+..  ++.+.-.|=.-...++|.+++..+++ +..    .+-+..|++....+++..++.....
T Consensus       116 ~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  116 LVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             TTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcC
Confidence            444444444444443332  23344455566777888888888888 432    2345667765555544444433333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=98.71  E-value=3.9e-07  Score=70.92  Aligned_cols=111  Identities=12%  Similarity=0.047  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhccchhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      +..+.+.....++.+++.+++++++||+|+|+.+..+.....+......+.  ++.+.+.+..++.|++.+...+....+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677778889999999999999999988775554443333332222  233344455566787777666666677


Q ss_pred             hhccCCc-----cccc--cchhhhhHHHHHHHHHHHHHHh
Q 041620           94 LSEMTTP-----KYRG--TFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        94 ~~~~~~~-----~~r~--~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ++|..+.     .+|.  ...+.......+|..+++.+.+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777652     1333  3345566777788888887776

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.69  E-value=1.4e-06  Score=67.99  Aligned_cols=144  Identities=18%  Similarity=0.121  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH-HHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhccchhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIG-GVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQSVPL   92 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~   92 (172)
                      +..+...++..+...+..|+.|.++|+-++||.++.. ..+..+++..+.+.  ++++...+..++..++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677788888899999999999999877655544 45555566655553  34555555666667788888999999


Q ss_pred             hhhccCCcccc--------------------------ccchhhhhHHHHHHHHHHHHHHh-h-hcCCC----CcchHHHH
Q 041620           93 YLSEMTTPKYR--------------------------GTFNIGFQLCAAIGLLSANLLNC-T-QKIKG----GWGWRISL  140 (172)
Q Consensus        93 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~----~~~w~~~~  140 (172)
                      ++.|..+++++                          ++..+.-....++|+.+.-.+.. + ....+    ..+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          88888877777788777666554 2 12111    23467777


Q ss_pred             HhhhHHHHHHHHhhhhhcc
Q 041620          141 AMAAAPASILTIGASDWWY  159 (172)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~  159 (172)
                      .+.++-.++..+..++..+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~  248 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLP  248 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            7777666555554444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.8e-07  Score=69.12  Aligned_cols=137  Identities=9%  Similarity=0.059  Sum_probs=107.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      ..|.++++.....+.+..+..+|.+...++..|+...|.+.+..++..+.++...+.++.+ .....++.|+..+..+|.
T Consensus       266 ~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPT  344 (422)
T COG0738         266 LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPT  344 (422)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHH
Confidence            3788999999999999999999999999999999999999999999888888888888844 345677889999999999


Q ss_pred             hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      ..+...+..| ++-... |..-....+|+++.|.+.+  ...|..+-+..+.+...+|.+-+
T Consensus       345 Ifslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G--~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         345 IFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQG--VIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHhccC-cccccc-ceeeeeheecchHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999998 443333 3333445678888899888  55566666666664444444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.67  E-value=7.9e-07  Score=67.00  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHH-HHHHHHHHHHhhhhhhc-----cc-------hhH
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-----RKVS-ILIGGVAFLAGSALGVC-----AF-------NIY   70 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r~~~-~~~~~~~~~~~~~~~~~-----~~-------~~~   70 (172)
                      .|++++....+.+.+...+.. ...+..|+.+|+.+     ||.. +..+......+..+..+     .+       +.+
T Consensus         8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            456777777777666655544 46899999999988     7744 45555555554444332     23       222


Q ss_pred             ----HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           71 ----MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        71 ----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                          ...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                23345566799999999999999999999999999999988888899999988887

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.67  E-value=6.5e-07  Score=69.69  Aligned_cols=141  Identities=15%  Similarity=-0.017  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccch---------------------hHHHHHHH
Q 041620           19 TTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFN---------------------IYMLIFGR   76 (172)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~   76 (172)
                      .+....+.+...+.+++..++.+|+| ||++...+.++.+++.....+.++                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            34455555666688888999999999 477778888787777666654332                     36677888


Q ss_pred             HHHhhhhhhhccchhhhhhccCCcc--ccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTTPK--YRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      .+.|+..+..++.-++++++..+++  +.|..+|+.|.+..+.+.+..+..+ .....+. +-.+.+.+.++..++..+.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHH
Confidence            8999999999999999999999954  4599999999999999988887666 3333332 3456777778877777776


Q ss_pred             hhhhccc
Q 041620          154 ASDWWYR  160 (172)
Q Consensus       154 ~~~~~~~  160 (172)
                      ..+..||
T Consensus       467 ~~~~~~~  473 (477)
T TIGR01301       467 ALILLPR  473 (477)
T ss_pred             HHHhCCC
Confidence            6665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.5e-06  Score=67.00  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=94.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhcc
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      .+.++............+.+++.++..++.+|+|+|+++..+.++.+++.++..+.  ++.++.++..++.+++.+..++
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            45556666677777778888889999999999999999999999999999888776  4788888899999999999999


Q ss_pred             chhhhhhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620           89 SVPLYLSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        89 ~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ...++++|..+-+       .-|...+...++.-+|..++..+.+
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g  391 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG  391 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887522       2245566677777778887776665

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=6.5e-08  Score=72.41  Aligned_cols=138  Identities=13%  Similarity=0.052  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620           16 QLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      -+.|....-..+.+.+++.+.|.++||++  |-.....+.+...+.+....+++++..+++-++..+++.+...+.....
T Consensus       306 w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            35565556667889999999999999999  5445555566666777778889999999999999999888887777777


Q ss_pred             hhccCCccc------cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           94 LSEMTTPKY------RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        94 ~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..+..+.++      -|...++...++.+|..++|.+++  ...+..|++|...+.++..++-..+..
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg--~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGG--SLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccc--hheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            777766443      357788889999999999999999  666778899988887777766544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.59  E-value=4.4e-07  Score=70.09  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=107.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRL   77 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   77 (172)
                      .++++|+++++.....+...+.. ...++.|.++|-+     .||+-++++.++..++...+...    .+.....+..+
T Consensus        16 l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~   94 (433)
T PF03092_consen   16 LKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLF   94 (433)
T ss_pred             HHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHH
Confidence            46789999999887766655443 4688899999976     36666777777775555544432    35666677778


Q ss_pred             HHhhhhhhhccchhhhhhccCC--ccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           78 LLGVGIGFGNQSVPLYLSEMTT--PKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        78 l~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      +..+|........-+...|...  ++.|+...+.......+|+.++..+.+  ...+..+++..|.+.++...+..+...
T Consensus        95 la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G--~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   95 LASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSG--PLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh--hhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            8899999999999999999974  333677778888888899999988888  333445677788777666665554444


Q ss_pred             hhcc
Q 041620          156 DWWY  159 (172)
Q Consensus       156 ~~~~  159 (172)
                      +..+
T Consensus       173 ~~~~  176 (433)
T PF03092_consen  173 FLLE  176 (433)
T ss_pred             Hhhh
Confidence            4443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.57  E-value=6.8e-07  Score=69.46  Aligned_cols=146  Identities=16%  Similarity=0.043  Sum_probs=93.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch---------hHHHHHHHHHHHHhhhhhhccch-hHHHHHHH
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGR---------KVSILIGGVAFLAGSALGVCAFN-IYMLIFGR   76 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   76 (172)
                      .++.+|+|-.+.|+..++..+.+.+..+++|+++||.-+         |..-.++....++......+.++ .....+..
T Consensus       285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~  364 (466)
T KOG2532|consen  285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL  364 (466)
T ss_pred             HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence            346689999999999999999999999999999998755         22233334444444444555442 11111111


Q ss_pred             HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      +..+.+..+........-.....+++-+..+++.+....+.+.++|.+.+ +..-.+...|+..|++.++..++..+
T Consensus       365 l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i  441 (466)
T KOG2532|consen  365 LTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI  441 (466)
T ss_pred             HHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence            22222222222222222222214577789999999999999999999988 43211345799999998887766554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.56  E-value=2.1e-06  Score=65.96  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~   82 (172)
                      ++.+|.++.+.++.......+..+++.+.+++.+|..+++.......+..++.....     ..++.+...+..++.++|
T Consensus       246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G  325 (413)
T PRK15403        246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG  325 (413)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence            456789999999988888888888888888876554444433222222222221111     123343456677888888


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+...+......- .-++..+|++.++.+.....+...++..++
T Consensus       326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g  368 (413)
T PRK15403        326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGR  368 (413)
T ss_pred             HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776664332 222334799999988888777778877776

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.53  E-value=4.5e-08  Score=74.49  Aligned_cols=130  Identities=12%  Similarity=-0.026  Sum_probs=97.2

Q ss_pred             HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch-h---HHHHH-HHHHHhhhhhhhccchhhhhhccCCcc
Q 041620           27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN-I---YMLIF-GRLLLGVGIGFGNQSVPLYLSEMTTPK  101 (172)
Q Consensus        27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~  101 (172)
                      .+.+.|..+..++.|+.|||+..+.+.+++.+..+..+...| .   ..+.+ ..+.+=++.-+.......+.+|.+|.+
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            455568888999999999999999999999988887776544 1   11112 222222333344667788899999999


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHhhhcCCC-----CcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620          102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKG-----GWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus       102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .|++..++.....-.|++++.....  ...+     ..+.++.+++.+....+..+..++++
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~--~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFL--YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhh--HhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            9999999999999999999888755  3333     56789999998888877777666665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.52  E-value=8.2e-10  Score=85.18  Aligned_cols=131  Identities=18%  Similarity=-0.006  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh--c--c-ch----hHHHHHHHHHHhhhhh-hhccchhhh
Q 041620           24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV--C--A-FN----IYMLIFGRLLLGVGIG-FGNQSVPLY   93 (172)
Q Consensus        24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~--~-~~----~~~~~~~~~l~g~~~~-~~~~~~~~~   93 (172)
                      ...+...++.+...++.||+|||+.++.+....++......  .  . ++    -...++...+...+.+ ...+....+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~  373 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY  373 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence            33455667777888999999999999999888877776653  1  1 22    1112222222222222 335666788


Q ss_pred             hhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ..|.+|++.|.++.++......++..+++.+..  ...+..+-...+.+.+..+++..+..++
T Consensus       374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFP--YLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc--cccccccccccchhhHHHHHHHHhheeE
Confidence            999999999999999988888888888887754  3333333123444444444444443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.44  E-value=6.5e-07  Score=52.88  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHH
Q 041620            5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYML   72 (172)
Q Consensus         5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (172)
                      |..+++.++|.++.+++.+.+.+|+.+|++...++.++..+++.+..+.+...+..+.+.+.++.+.+
T Consensus        16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            44678899999999999999999999999999999999998999999999999999999988887654

Note that many members are hypothetical proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=4.4e-07  Score=73.00  Aligned_cols=154  Identities=19%  Similarity=0.104  Sum_probs=125.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------------------
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-------------------   66 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-------------------   66 (172)
                      .+++.++++.++.|++.+.+-+++.+...+..+...|.-|-+.+-++++++++++++..+-                   
T Consensus       122 tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  122 TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            4678899999999999999999999999999999999999998888888888777665431                   


Q ss_pred             -c-----------------------------h--hH-HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHH
Q 041620           67 -F-----------------------------N--IY-MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC  113 (172)
Q Consensus        67 -~-----------------------------~--~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  113 (172)
                       +                             +  ++ +++++.++.|+|....++...+|+-|...+++-....++.+..
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence             0                             0  22 5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-hhcC-CCC--------------c-chHHHHHhhhHHHHHHHHhhhhhcc
Q 041620          114 AAIGLLSANLLNC-TQKI-KGG--------------W-GWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus       114 ~~~g~~~~~~~~~-~~~~-~~~--------------~-~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ..+|-++|-++++ +..+ .+.              . .|..-|++.+.+.++..+..+++++
T Consensus       282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999988887 3221 111              0 3777888888888877777777663

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=5.6e-06  Score=65.35  Aligned_cols=103  Identities=13%  Similarity=-0.043  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc----h--------hHHHHHH-HHHHhhhhhh
Q 041620           19 TTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF----N--------IYMLIFG-RLLLGVGIGF   85 (172)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~-~~l~g~~~~~   85 (172)
                      .+......+...++..+..++.||+|||+.++.+...+.++....+...    +        .+..++. .+........
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            4445555667778888889999999999999999999988887665431    1        1111121 2222222223


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA  121 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  121 (172)
                      ..+....+.+|.+|.+.|+++.++..........+.
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            345555788999999999999999666555544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.32  E-value=4e-08  Score=70.82  Aligned_cols=115  Identities=13%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGV   81 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~   81 (172)
                      +.+.+.+++.++..++-+++..-+++-+++.|++.|| +|-|.-.++-+....++.+++..   .+.+|++...|++.|+
T Consensus        69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI  148 (459)
T KOG4686|consen   69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI  148 (459)
T ss_pred             hhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc
Confidence            3456777888888899999999999999999999996 67776666666666666665543   5889999999999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHH
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS  120 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  120 (172)
                      |.-..-.+.+.+..-++..|+-+.++|+..+...+|+.+
T Consensus       149 GgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  149 GGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             CchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence            998888999999999999999999999988888887653

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.27  E-value=5.7e-05  Score=57.58  Aligned_cols=147  Identities=12%  Similarity=0.066  Sum_probs=115.1

Q ss_pred             CCCCChhHHHH-HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620           10 YSKFDSQLLTT-FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        10 ~~~~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.|++++|..- +.....-.+....++...++|..+.|++++++.+...+...+..+.++...+-+..+..|+..+. ..
T Consensus        34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev  112 (412)
T PF01770_consen   34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV  112 (412)
T ss_pred             ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence            36888877763 44444567778888999999999999999999999999988888899999999999999998876 66


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +..+++-...|+++-.++.+.......+|..++.+++. +.. .+..+++....+......+..+..++++
T Consensus       113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs-~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS-FGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            77788888889888888888888888888888877776 322 2334677777776665555665556666

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.26  E-value=2.6e-06  Score=64.50  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhhhhhhcc--c-------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccc---cccchhhhhHHH
Q 041620           47 VSILIGGVAFLAGSALGVCA--F-------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKY---RGTFNIGFQLCA  114 (172)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~  114 (172)
                      |++.++.++..++..+..++  +       +.+.++++..+.++|.|..-+....+.+|.+++++   |.+..+.++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56778888888887774433  1       23678899999999999999999999999998763   455677789999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620          115 AIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus       115 ~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ++|..+++.+..  ...++.+|.+.|.+.++..++..+....
T Consensus        82 n~G~~~~~~~~~--~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVP--YIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCC--HHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccch--hhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            999999988876  4446779999999988877766554333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.25  E-value=4.6e-06  Score=48.65  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAF   56 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~   56 (172)
                      .++.|+|+.++|.+.++..+...++++++|.++||+++++.++.....+
T Consensus        27 ~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   27 LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3568999999999999999999999999999999999988877665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.17  E-value=1e-05  Score=60.63  Aligned_cols=119  Identities=14%  Similarity=0.072  Sum_probs=104.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+.++.++.|.|-+.+...+.+.+.+....+..||..  -+-.+..+..++.-..+.....+....+.....+-.+....
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4779999999999999988999999988888888877  66667777777766667777778888888899999998888


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .-+....++....|+++||+.+|+..+...++-++||++++
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g  409 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG  409 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence            88889999999999999999999999999999999999997

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.13  E-value=1.9e-05  Score=61.85  Aligned_cols=133  Identities=10%  Similarity=-0.019  Sum_probs=84.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHHHHHHHhh-hhhhccchhHHHHHHHHHHhhhhh
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSILIGGVAFLAGS-ALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      ..|.|..+...+.+.+.++.+++.+++|+++||    +.+|........+..+.. ......++.............+..
T Consensus       303 ~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~  382 (495)
T KOG2533|consen  303 NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI  382 (495)
T ss_pred             CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhH
Confidence            456889999999999999999999999999999    667766666655554433 333333334444444444445555


Q ss_pred             hhccchhhhhhccCCcccc-ccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhh
Q 041620           85 FGNQSVPLYLSEMTTPKYR-GTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMA  143 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~  143 (172)
                      ...+......++....+.| -+..+.+..+.+.+..++|.+-. ......+.|...|...
T Consensus       383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~-~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR-SLDAPRYGWGAVFYML  441 (495)
T ss_pred             HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc-cccCcchhhhhHHHHH
Confidence            5666677777777765554 44455566666666666655532 1223335677777433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.06  E-value=6.5e-05  Score=59.37  Aligned_cols=99  Identities=18%  Similarity=0.076  Sum_probs=80.1

Q ss_pred             HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH---HHHHHHHHHhhhhhhhccchhhhhhccCCccccc
Q 041620           28 TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY---MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRG  104 (172)
Q Consensus        28 ~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  104 (172)
                      ....+....+...|++|||.....+.++..++++......+..   ...+...+..++.+..+.....+.+|.+|+..|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            4455666678999999999999999999999998888764322   3445555555566666667799999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHh
Q 041620          105 TFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus       105 ~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+.+..+....+|.+++|.+..
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~  463 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPL  463 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.01  E-value=9.2e-05  Score=57.68  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhh-hhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIAS-SVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      .+..+++++++.+...+.......+++.+.. .+...+|-|+++..+++.-.+..+..++.++.|+.+....+.++.. .
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~  346 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-I  346 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-c
Confidence            3567899999999988888888888877666 8888899999999999999999999999999999988888877765 4


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..+...+..+.+.+++++|+..++......+...++|.+-+
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence            58888999999999999999999999999999999988876

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.94  E-value=0.0001  Score=57.08  Aligned_cols=149  Identities=8%  Similarity=-0.031  Sum_probs=102.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-cc---------chhHHHHHHHHHHh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-CA---------FNIYMLIFGRLLLG   80 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~l~g   80 (172)
                      .|+|++..+.+..+..++..++..+..+..-++.-|+++....++.++..+.-. +.         ++.+-.+.-.++..
T Consensus       250 p~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~  329 (433)
T PF03092_consen  250 PHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE  329 (433)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence            348999999999888899999999998888888888888888877766554322 11         22233333456666


Q ss_pred             hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC-----CCcchHHHHHhhhHHHHHHHHhh
Q 041620           81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK-----GGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      +.....+-+...+++|.+|+..-++..++.....++|..++..++. +....     +..+..+..++..+..++...+.
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll  409 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            6666667778889999999999999999998888888888888876 32211     11223344445455554455544


Q ss_pred             hhhcc
Q 041620          155 SDWWY  159 (172)
Q Consensus       155 ~~~~~  159 (172)
                      .+.++
T Consensus       410 ~lLp~  414 (433)
T PF03092_consen  410 FLLPP  414 (433)
T ss_pred             HHcCC
Confidence            45555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.91  E-value=0.00029  Score=55.42  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhch--h----HH-HHHHHHHHHHhhhhhhcc---------chhHHHHHHHHHHhh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGR--K----VS-ILIGGVAFLAGSALGVCA---------FNIYMLIFGRLLLGV   81 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr--~----~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~   81 (172)
                      ..|..+.+.+.-++.+|+.+++=.|..|  |    +. +.+++++.+++.+.+...         .+.++++..-++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4556677777777778877777666522  1    11 556666666666554321         256778888999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHH-HHHHHHHHHHHHh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC-AAIGLLSANLLNC  126 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~  126 (172)
                      |.-...|.....+++..|++.|++.+|.+... ..+|..++..++.
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998663 3677777766665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.90  E-value=0.00032  Score=53.42  Aligned_cols=142  Identities=13%  Similarity=-0.019  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH-HHHHHhhhhhhccc---hhHHHHHHHHHHhhhhhhhccch
Q 041620           15 SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGG-VAFLAGSALGVCAF---NIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      .+..+...++..+-..+-+|+.|.++|+.|+||..+... .+..++.....+.+   +.+...+...+..++....+...
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            355566677777888889999999999999776655544 44444444555543   34555566777788888889999


Q ss_pred             hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---------------CCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---------------IKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---------------~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      ++++.+..++++-++..++-.....+|+.+.-.... ...               ..+...-|..+.+.++-.++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            999999999998888888855555666655443321 000               0133456777777666555555444


Q ss_pred             hh
Q 041620          155 SD  156 (172)
Q Consensus       155 ~~  156 (172)
                      +.
T Consensus       217 ~~  218 (438)
T COG2270         217 IL  218 (438)
T ss_pred             Hh
Confidence            43

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.89  E-value=0.00081  Score=52.57  Aligned_cols=113  Identities=13%  Similarity=0.037  Sum_probs=81.1

Q ss_pred             ChhHHHHHHHHHHHHHHHH-HHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----c--------------------
Q 041620           14 DSQLLTTFISSLYITGILA-SLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----F--------------------   67 (172)
Q Consensus        14 s~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~--------------------   67 (172)
                      +.+.+.++-+...+...+. .++.+++++|++|++++-.....+.....++++.     +                    
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467888888777666555 8999999999999998877665555544443332     1                    


Q ss_pred             ------hhHHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           68 ------NIYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        68 ------~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                            +.|...+.-+...+......+ .-..+++|.++.++-.|..++...+.++|..+++.+..
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122222333344444444444 67789999999999999999999999999999998876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.71  E-value=0.00019  Score=57.47  Aligned_cols=110  Identities=15%  Similarity=-0.018  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHhhhhhhc--cchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620           17 LLTTFISSLYITGILASLIASSVTRALGRKV-SILIGGVAFLAGSALGVC--AFNIYMLIFGRLLLGVGIGFGNQSVPLY   93 (172)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~   93 (172)
                      ..++......++..+++.+.|.+..+.+|-| .++++.++..+++-.+..  .+|....+...++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            5677778888899999999999999888654 455666666554444333  2566666788889999999988888888


Q ss_pred             hhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ..-..|+++-+++.++......+|+.++..+..
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888889999999999999999999888877764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00091  Score=53.56  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=97.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc--------------------
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF--------------------   67 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~--------------------   67 (172)
                      .++|.+...+.-....+.-......+..++++|. +||-+++.++.++..++..+...+.                    
T Consensus        66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~  145 (571)
T KOG1237|consen   66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE  145 (571)
T ss_pred             HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence            3455555555555555555556677899999997 4899999999888877754333210                    


Q ss_pred             -----hhHHHHHHHHHHhhhhhhhccchhhhhhccCC---cccc-c--cchhhhhHHHHHHHHHHHHHHhhhcCCCCcch
Q 041620           68 -----NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTT---PKYR-G--TFNIGFQLCAAIGLLSANLLNCTQKIKGGWGW  136 (172)
Q Consensus        68 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r-~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w  136 (172)
                           ....+....-+..+|.|+.-+....+-+|.++   ++++ .  ..+..++...+.|..++..+.-  +..++.+|
T Consensus       146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v--yiq~~~~w  223 (571)
T KOG1237|consen  146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV--YIQDNVGW  223 (571)
T ss_pred             CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH--hhhhcccc
Confidence                 11355566677788999999999999999998   3222 2  4455666677777777766643  55567799


Q ss_pred             HHHHHhhhHHHHHHHHh
Q 041620          137 RISLAMAAAPASILTIG  153 (172)
Q Consensus       137 ~~~~~~~~~~~~~~~~~  153 (172)
                      .+.|.+......+..++
T Consensus       224 ~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  224 KLGFGIPTVLNALAILI  240 (571)
T ss_pred             eeeccHHHHHHHHHHHH
Confidence            99998877766555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.62  E-value=0.0004  Score=53.31  Aligned_cols=115  Identities=15%  Similarity=0.024  Sum_probs=79.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhhc-c---chhHHHHHHHHHHhhhhhhh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGVC-A---FNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g~~~~~~   86 (172)
                      |.+....|.......+++++++.+.|.+.||.+. |.+++.......++...... .   ...+.++..-.+.|++....
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            3444678888888889999999999999999875 45555555554444222221 1   34455666777888888888


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .|....+..|..-|..-++..|+.+....+-+.+-..+-+
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~  416 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMG  416 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHH
Confidence            9999999999976666677888876665555544444444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.54  E-value=0.0034  Score=48.01  Aligned_cols=133  Identities=16%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.+.-..+.+.....+-..+..+...++.+|+..+.=+....+++.++.+..+++++.++-+++-.+.+++.|..-...-
T Consensus        55 ~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL  134 (402)
T PF02487_consen   55 DCKSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFL  134 (402)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHH
Confidence            33444455566666777888888899999998755445666677788888888889999988999999988887655555


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHH
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILT  151 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~  151 (172)
                      .+ ...+++    ...+-+.++.+.++.+|+..-. +..  -..+.|..+.......++..
T Consensus       135 ~l-t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~  188 (402)
T PF02487_consen  135 SL-THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFL  188 (402)
T ss_pred             HH-HHhcCc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHH
Confidence            54 334543    3466777777778888877655 433  22345666666555544333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PTZ00207 hypothetical protein; Provisional

Probab=97.52  E-value=0.00032  Score=56.29  Aligned_cols=133  Identities=12%  Similarity=0.014  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhh---------hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620           21 FISSLYITGILASLIASSVTRA---------LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~l~d~---------~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      +.+.+.+++.+|.+..|+++..         +.|.-.+.+..+ +.++.+++.+.-+...+.+..++.|++.|..++...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            5677778888888888877722         222222333333 555555555543336788999999999999999999


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHHH-HHHHh-hhc--C--CC------CcchHHHHHhhhHHHHHHHHhhh
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSA-NLLNC-TQK--I--KG------GWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~-~~~--~--~~------~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      ..++|.|. |+-|+-..+......+|+.+- ..+.+ +-.  .  .+      ..=++..|++.+..+....+...
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            99999998 777777776666666666554 33333 110  0  00      01167888888777777665544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.37  E-value=7.9e-05  Score=57.16  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHH-HHHHHhhhhhhccchh--------------
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSILIGG-VAFLAGSALGVCAFNI--------------   69 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~~~~-~~~~~~~~~~~~~~~~--------------   69 (172)
                      +..|++....+.+-...-+...+-+|+.|..+||    |||||.++... +...++.++..++.++              
T Consensus        60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~  139 (498)
T KOG0637|consen   60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP  139 (498)
T ss_pred             HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence            4566666666666666667778889999999995    88887766654 4445555555554222              


Q ss_pred             ---HHHHHHHHHHhhhhhhhccchhhhhhccCCcccccc-chhhhhHHHHHHHHHHHHHHh
Q 041620           70 ---YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGT-FNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        70 ---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~  126 (172)
                         ..+++..-+.=+.....+..+-+++.|...+++|.+ +++.+..+..+|..++...++
T Consensus       140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence               223333344445666778889999999998777776 999999999999988887774

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.0025  Score=49.55  Aligned_cols=103  Identities=22%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCcc
Q 041620           22 ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPK  101 (172)
Q Consensus        22 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  101 (172)
                      .++......+.+++.+.+.|+.|+|..+.++........+.... .|-+-++....+.|+|.+..+.....+++|..++|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            56667788899999999999999999999999888776655443 45677889999999999999999999999999999


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHH
Q 041620          102 YRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus       102 ~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      .+.+..++.=.....+..+|..+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhh
Confidence            999888886555566666665544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.21  E-value=0.0084  Score=46.51  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---cc---c----hhHHHHHHHHHH
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CA---F----NIYMLIFGRLLL   79 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~---~----~~~~~~~~~~l~   79 (172)
                      ..|.++..+|..-+...+..+.+.+...++.+|+|..|.=+++...-.....++.   +.   +    +...++.+..+.
T Consensus       287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S  366 (432)
T PF06963_consen  287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS  366 (432)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence            3489999999999999999999999999999999988877776543322222111   11   2    233344444444


Q ss_pred             hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcch
Q 041620           80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGW  136 (172)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w  136 (172)
                      =+|.=...-...-++.|..|+++||+..+..++..++...+...+.....-+++++|
T Consensus       367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~  423 (432)
T PF06963_consen  367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW  423 (432)
T ss_pred             HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence            455555677778889999999999999999999988888877776542233334444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.15  E-value=0.005  Score=48.05  Aligned_cols=138  Identities=17%  Similarity=0.089  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHhhhhhhcc----------chhHHHHHHHHHHh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRK-------VSILIGGVAFLAGSALGVCA----------FNIYMLIFGRLLLG   80 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g   80 (172)
                      ..+..+.+.+.-++.+|+..++-.|.+++       .=+-++..++..+.+.....          .+.++++..-++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            44556777778888888888888875443       12344444444444433221          36788889999999


Q ss_pred             hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      +|.-...+.....+.+..|++-.+..++.+......|..++..++. ...   ..+.......|+..+...++..+...
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888888877777777666654 110   12223445566666666555544433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.03  E-value=0.0056  Score=46.91  Aligned_cols=112  Identities=12%  Similarity=-0.009  Sum_probs=80.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH--HHHhhh---hhhccchhHHHHHHHHHHhhhhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA--FLAGSA---LGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      ..-.+++.-+....+.+|..++.--...+  |+  |++.+.+.+-  ..+..+   ..-+.++.|..++..+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            34446777777888888777664432221  33  3343333322  222222   233457899999999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+......+.|..|+++|..+++....+-..|..++.+++.
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988875

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.014  Score=45.47  Aligned_cols=104  Identities=20%  Similarity=0.252  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhh---hchhHHHHHHHHHHHHhhhhhhcc------------------chhHHHHHHHHH
Q 041620           20 TFISSLYITGILASLIASSVTRA---LGRKVSILIGGVAFLAGSALGVCA------------------FNIYMLIFGRLL   78 (172)
Q Consensus        20 ~~~~~~~~~~~~~~~~~g~l~d~---~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l   78 (172)
                      .-......|.+++..+.+.+.+|   +||++.+..+..+..+.+++....                  ++.....+.-++
T Consensus       283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence            33344456777777777777764   789999998888877777665442                  135577788899


Q ss_pred             HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHH
Q 041620           79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLL  124 (172)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  124 (172)
                      .|++-...++.....+.+.. +++|..+.+++-.-..++..++-..
T Consensus       363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999 6778888887766666666554443

>PRK03612 spermidine synthase; Provisional

Probab=96.50  E-value=0.15  Score=40.75  Aligned_cols=114  Identities=14%  Similarity=0.051  Sum_probs=64.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH---hhhhhhc----cchh-HHHHHHHHHHhhh
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLA---GSALGVC----AFNI-YMLIFGRLLLGVG   82 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~---~~~~~~~----~~~~-~~~~~~~~l~g~~   82 (172)
                      +|-+..+.+.+.+.+..|..+|+.+.+++.++--++... .-..+..+   +..+...    .... .......++.++.
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l  123 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL  123 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677788888999999999999998887443333221 11111111   1111111    1111 1223344556777


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .|+..|....+..+... ++-+...|-.+....+|+.+|.++.+
T Consensus       124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~  166 (521)
T PRK03612        124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP  166 (521)
T ss_pred             HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence            77776666655544322 22345566667777777777777766

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.46  E-value=0.005  Score=48.65  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=47.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH-HHHHHHhhhhhhcc
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIG-GVAFLAGSALGVCA   66 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~-~~~~~~~~~~~~~~   66 (172)
                      -+++|+++.+.|.+...--+..+++.|++|+++||+.+||.++++ .+......++..+.
T Consensus        38 ~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   38 FKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             HHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            367899999999999999999999999999999999877665555 44455555555554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.05  E-value=0.011  Score=45.91  Aligned_cols=114  Identities=14%  Similarity=0.032  Sum_probs=68.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-------hhHHHHHHHHHHHHhhhhh----h-ccchhHHHHHHHHHHh
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTRALG-------RKVSILIGGVAFLAGSALG----V-CAFNIYMLIFGRLLLG   80 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-------r~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~g   80 (172)
                      .+.++..++..+...++.+|.+++|.++||+-       |.+.--+.+.+.+..++.+    . +..+........+++|
T Consensus       280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g  359 (493)
T KOG1330|consen  280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVG  359 (493)
T ss_pred             CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45556666777778899999999999999943       2222222222222222221    1 1233333444555556


Q ss_pred             hhhhh-hccchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh
Q 041620           81 VGIGF-GNQSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC  126 (172)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~  126 (172)
                      ..... ..+...-...|..|+++|.++.++-.. ....|..-+|.+.+
T Consensus       360 ~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  360 ETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             HHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence            54433 355667788899999999999999544 44456666664544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.00  E-value=0.0036  Score=45.54  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.+++.+.+++.+.....-..++...+.|.++||-|||+.-+.-++...++|+ .-.++++-.+.++|.+-|+..+..++
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFS  143 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFS  143 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHH
Confidence            56778888888877766667778888899999999999986666666655543 34568889999999999999988877


Q ss_pred             chhh-hhhccC
Q 041620           89 SVPL-YLSEMT   98 (172)
Q Consensus        89 ~~~~-~~~~~~   98 (172)
                      .-.. +++|..
T Consensus       144 aFEsWliaEHn  154 (454)
T KOG4332|consen  144 AFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHhh
Confidence            7554 456655

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.12  E-value=0.23  Score=38.22  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             HHHhhhhhhh-----hhchhHHHHH------HHHHHHHhhhh------hhccchhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620           32 ASLIASSVTR-----ALGRKVSILI------GGVAFLAGSAL------GVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYL   94 (172)
Q Consensus        32 ~~~~~g~l~d-----~~gr~~~~~~------~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~   94 (172)
                      -.+.+..+.|     |+||||.-+.      +.++..++...      .+-.++........++.-+..+....+.-.+.
T Consensus        79 LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwA  158 (510)
T KOG3574|consen   79 LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWA  158 (510)
T ss_pred             HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            3457778888     9999986443      33333332211      11123444454566777888888888899999


Q ss_pred             hccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620           95 SEMTTPKYRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        95 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      -.+..+++-+.+..-...+.+.|.+++..+.
T Consensus       159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            9999999999888888888888887776654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.44  E-value=0.44  Score=36.73  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             hhHHHHHHHH-HHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhh------hhhccchhHHHHHHHHHHhhhhhh
Q 041620           15 SQLLTTFISS-LYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSA------LGVCAFNIYMLIFGRLLLGVGIGF   85 (172)
Q Consensus        15 ~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~   85 (172)
                      +...-..... +++.-.+|.+...++-++=. |+..+...  .+..-...      ....-++-++.+....++|+..|.
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~-r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWPDP-RKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCCCC-ceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            3333444445 67888888777766655443 33333222  22222222      112346777888999999999999


Q ss_pred             hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620           86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      ..+....+..+..|++++..+..+...+...|-..|..++
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999988887777777777777766653

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.24  E-value=2.3  Score=33.95  Aligned_cols=113  Identities=19%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---------chh--------------
Q 041620           14 DSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---------FNI--------------   69 (172)
Q Consensus        14 s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---------~~~--------------   69 (172)
                      +++.+..+-....+ ..++...+..+++||++|++++-.....+.....+.++.         ++.              
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            56666666665544 556678889999999999998776655444433332221         111              


Q ss_pred             --------HHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           70 --------YMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        70 --------~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                              |...+.-++.-+-.....+ .-..+.+|.++.++-.+..+++..+.++|..+++.+..
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~  201 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTS  201 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1111111111122222222 34788999999999999999999999999998888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.04  E-value=0.53  Score=37.34  Aligned_cols=96  Identities=14%  Similarity=0.009  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620           19 TTFISSLYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSE   96 (172)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~   96 (172)
                      |..-++..+.+.+.++..|++-.++.+---+.++.  ++-+...+++...+|.|..+++-++.+.......+....-+++
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556677788899999877775533333333  3333334556677999999999999999998888888888888


Q ss_pred             cCCccccccchhhhhHHH
Q 041620           97 MTTPKYRGTFNIGFQLCA  114 (172)
Q Consensus        97 ~~~~~~r~~~~~~~~~~~  114 (172)
                      ....+.-+...|++++..
T Consensus       381 ~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       381 SLSKELCALVFGINTFVA  398 (511)
T ss_pred             HhcccceEEEEecHHHHH
Confidence            888888899999977653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=93.83  E-value=0.1  Score=42.76  Aligned_cols=53  Identities=13%  Similarity=0.037  Sum_probs=42.2

Q ss_pred             CCCCCCChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhh
Q 041620            8 SNYSKFDSQLLTTFISSLYI-TGILASLIASSVTRALG--RKVSILIGGVAFLAGS   60 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~   60 (172)
                      ++.+|.++.+.+++.....+ +.+++.++.|++.||++  .|+.+.++.++..++.
T Consensus       358 ~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       358 ENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            45689999999999887775 67899999999999998  4567776666665554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.75  E-value=0.079  Score=40.00  Aligned_cols=148  Identities=9%  Similarity=-0.009  Sum_probs=97.7

Q ss_pred             CCCChhHHHH-HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620           11 SKFDSQLLTT-FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS   89 (172)
Q Consensus        11 ~~~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~   89 (172)
                      -++++++..- +.....-...+.-.+.=.+.|....|++++.-.+..........+.++.+..=+.-+..|...+. ..+
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIA  114 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIA  114 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHh
Confidence            3455554431 22222334455556666799999999998888887777777888888988888888888887654 566


Q ss_pred             hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      .++++-+..|++++.++.+..-...-.|...+..++.+....+..++...=.+......+......+.++
T Consensus       115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~  184 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR  184 (433)
T ss_pred             hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence            7888888899999999999887777777777777665112222234444444444433444444455553

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.44  E-value=2.2  Score=31.64  Aligned_cols=134  Identities=16%  Similarity=0.022  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHhhhhhhc----c---chhHHHHHHHHHHhhhhhhhc
Q 041620           17 LLTTFISSLYITGILASLIASSVTRALGRK--VSILIGGVAFLAGSALGVC----A---FNIYMLIFGRLLLGVGIGFGN   87 (172)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~g~~~~~~~   87 (172)
                      --|.+.+.+..+..+|+-+..++..|-.+|  +.+.+..+..++...+...    +   .+...-+++..+.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            356778888889999998888888776654  3444444444333322221    1   122233455555667788889


Q ss_pred             cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      |...-+-.+..|++.|.+.+..+-.-.++-  .+-.+-....-....+-|..|-++.....+..+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnif--vClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIF--VCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHh--hhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            999999999999999988887765543332  221221110111122456777766665554433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.12  E-value=1.3  Score=34.46  Aligned_cols=96  Identities=13%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS   95 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~   95 (172)
                      =|.+-....+.+.++++..|++..++.+..-+..+.  ++.+...+++...+|.|...++-++.+.......+....-++
T Consensus       287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA  366 (412)
T PF01770_consen  287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA  366 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667777788889999999988887755444443  333444556667789999999988888888777777777788


Q ss_pred             ccCCccccccchhhhhHH
Q 041620           96 EMTTPKYRGTFNIGFQLC  113 (172)
Q Consensus        96 ~~~~~~~r~~~~~~~~~~  113 (172)
                      .....|.-+...|++.+.
T Consensus       367 ~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  367 KNLSEERYALVFGINTFV  384 (412)
T ss_pred             HhccccceeeeeeeHHHH
Confidence            888778888888887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.74  E-value=1.1  Score=35.17  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=51.3

Q ss_pred             chhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           67 FNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        67 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      ++-+..++..++.|+.+|...+....+..+..++++|..+..+...+..+|-..|..++.
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667778999999999999999999999999999999888888888888888877754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=91.94  E-value=0.092  Score=41.37  Aligned_cols=75  Identities=15%  Similarity=0.203  Sum_probs=57.4

Q ss_pred             HHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           76 RLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        76 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      -++.|.+.........++-+|...++++++..++++.....+..++|.+..  .....+|.|+.+.+.....++...
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t--~~~~~~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFST--AIFTLSGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHh--hhHHhcCccHHHHHHHHHHHHHHH
Confidence            445577776677778899999999999999999999999999999999976  444455777777665554444333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=91.65  E-value=0.59  Score=34.98  Aligned_cols=70  Identities=19%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             HHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           57 LAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      .+......+.+++|..++..+.-|+-.|..+....--+.+-.++++|..+++....+-..|..++..++.
T Consensus       330 f~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  330 FLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            3334455677899999999999999888888888888888889999999999999999999988888865

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.19  E-value=6.2  Score=31.02  Aligned_cols=30  Identities=17%  Similarity=-0.020  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 041620           26 YITGILASLIASSVTRALGRKVSILIGGVA   55 (172)
Q Consensus        26 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~   55 (172)
                      .+..++.++..|.+.||..|.+++..+.+.
T Consensus        48 ~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~   77 (432)
T PF06963_consen   48 SLSAILFGPWVGRWIDRSPRLKVIRTSLVV   77 (432)
T ss_pred             HHHHHHhhHHHHHHHhCCcchhhHHHHHHH
Confidence            356678899999999999999987776544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.19  E-value=7.7  Score=30.50  Aligned_cols=100  Identities=10%  Similarity=0.035  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH-HHhhhhhhc----c---chhHHHHHHHHHHhhhhhhhccchhh
Q 041620           21 FISSLYITGILASLIASSVTRALGRKVSILIGGVAF-LAGSALGVC----A---FNIYMLIFGRLLLGVGIGFGNQSVPL   92 (172)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~-~~~~~~~~~----~---~~~~~~~~~~~l~g~~~~~~~~~~~~   92 (172)
                      ......+...+..+....+..|+..|.=+..+.++. .+......+    .   ..++..++..++.|++.+..++....
T Consensus        50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g  129 (437)
T TIGR00939        50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG  129 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence            333444555666666667777766421122232221 111111111    1   24566667778889999988888888


Q ss_pred             hhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620           93 YLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        93 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      +.+ .+|++.    +..+..+.++++.++..+.
T Consensus       130 la~-~fp~~~----~~a~~~G~g~aGv~~s~~~  157 (437)
T TIGR00939       130 LAG-VFPSTY----SSAVMSGQGLAGVLTSLAM  157 (437)
T ss_pred             hcc-cCCHHH----HHHHHhcchhHHHHHHHHH
Confidence            766 556554    3444445555555544443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.03  E-value=5.6  Score=31.90  Aligned_cols=53  Identities=11%  Similarity=0.013  Sum_probs=38.6

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620           73 IFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        73 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      ...-+++-+-.+....+.-.+.-.+..+++++.+..-...+.+.|..++..+.
T Consensus       122 t~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  122 TWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             HHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence            34444455555666777788888888999998888888888888877776654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=89.57  E-value=9.3  Score=30.53  Aligned_cols=114  Identities=16%  Similarity=0.045  Sum_probs=76.3

Q ss_pred             CChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---------ch--------------
Q 041620           13 FDSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---------FN--------------   68 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---------~~--------------   68 (172)
                      .+++.+.++-+...+ +.++..++.++++++..|.+++-..+..+....+++++.         ++              
T Consensus        58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            456667777777776 778899999999999999998776665554444443321         11              


Q ss_pred             ---------hHHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           69 ---------IYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        69 ---------~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                               .|...+.-.+.=+-.....+ .-.....|.++.++-.|..++++.+.+++..++..+..
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~  205 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS  205 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                     02222222222222222222 44567889999999999999999999999988888876

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=89.25  E-value=2.4  Score=32.12  Aligned_cols=97  Identities=22%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCc--ccc-
Q 041620           27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP--KYR-  103 (172)
Q Consensus        27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r-  103 (172)
                      ..-+..+.+.+.+.+++|.|+++..+......... .-+-+.+..++....+.|++.+..+..--+|+++.-..  +.| 
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~  147 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG  147 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence            34456777777999999999999888777655432 22346788888999999999999988888888777643  334 


Q ss_pred             --------ccchhhhhHHHHHHHHHHHHH
Q 041620          104 --------GTFNIGFQLCAAIGLLSANLL  124 (172)
Q Consensus       104 --------~~~~~~~~~~~~~g~~~~~~~  124 (172)
                              .+..+.+...+.-+...+..+
T Consensus       148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~i  176 (390)
T KOG3097|consen  148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLI  176 (390)
T ss_pred             hhccCceeeeehhHHHHHHHHHHHHHHHH
Confidence                    344555444444444444333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.74  E-value=3.2  Score=31.28  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=80.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccch
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      .++..-..|.+...-.+-..+-.+......||+.--+=+.+..++.+.+.++.+++++.++-..+-.+..++.|..-..-
T Consensus        57 r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTF  136 (409)
T KOG3880|consen   57 RECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITF  136 (409)
T ss_pred             ccccccccchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeeh
Confidence            34444445666666667777778888888988654333455567777888888899999999888888888877644333


Q ss_pred             hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620           91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI  152 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~  152 (172)
                      -. .+..+++.    ..+-++++.+.++.+|..--. +.... ..+-|....+...+..+...
T Consensus       137 L~-lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~  193 (409)
T KOG3880|consen  137 LA-LSSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAF  193 (409)
T ss_pred             hh-hhccCCCc----eeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHH
Confidence            32 23333332    233344444444455544333 32221 23456666665555444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.13  E-value=0.42  Score=37.45  Aligned_cols=67  Identities=19%  Similarity=0.127  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620           18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~   84 (172)
                      -.|=+.++.+...+.+...-++.||+|-|+.+..+...+.++.......++.+....-+-..|+-.+
T Consensus       334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~  400 (498)
T KOG0637|consen  334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSS  400 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeec
Confidence            3344566667778889999999999996666565555555555555556666666565555554333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=87.10  E-value=4.4  Score=32.48  Aligned_cols=53  Identities=11%  Similarity=0.140  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHH
Q 041620           72 LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLL  124 (172)
Q Consensus        72 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  124 (172)
                      +++.-.+..+.....+....++-++..+|..-|+.|.+.|...++|+---..+
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~  460 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF  460 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence            34445666777777888899999999999999999999999999987654444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.11  E-value=5.1  Score=24.84  Aligned_cols=31  Identities=29%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhh-chhHHHHH
Q 041620           21 FISSLYITGILASLIASSVTRAL-GRKVSILI   51 (172)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~   51 (172)
                      -.+.-++++++-....||+.||| |.++..++
T Consensus        47 klssefIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          47 KLSSEFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            34555677777778889999986 44544333

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=85.86  E-value=0.22  Score=36.97  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhh-hchhHHHHHH--HHHHHHhhhhhh----------ccchhHHHHHHHHHHhhhhhhhcc
Q 041620           22 ISSLYITGILASLIASSVTRA-LGRKVSILIG--GVAFLAGSALGV----------CAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus        22 ~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      ...++++-.+|..+.++.-=+ ..+|++...+  -++.....+.+.          ..+|-+..++..++.|+.+|...+
T Consensus       188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~t  267 (309)
T PF01733_consen  188 FLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLST  267 (309)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             HHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhh
Confidence            445667777888777653211 1244443332  222222222221          123446667788999999999999


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN  125 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  125 (172)
                      ....+..+..++++|..+..+...+...|-.+|..++
T Consensus       268 l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  268 LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             HHH----------------------------------
T ss_pred             ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888877777777776664

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=85.43  E-value=8.6  Score=25.56  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             hhhhhhchhHHHHHHH------HHHHHhhhhhhc----cchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccch
Q 041620           38 SVTRALGRKVSILIGG------VAFLAGSALGVC----AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFN  107 (172)
Q Consensus        38 ~l~d~~gr~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~  107 (172)
                      .++||.-||..+..+.      ..+.++.++..-    .++...+.....+.|+|.   ....+..++...++++.|...
T Consensus        56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSll  132 (153)
T PF11947_consen   56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLL  132 (153)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcc
Confidence            4677777776554443      111122211111    134444555555555544   336677778888889899999


Q ss_pred             hhhhHHHHHHHHH
Q 041620          108 IGFQLCAAIGLLS  120 (172)
Q Consensus       108 ~~~~~~~~~g~~~  120 (172)
                      |+-.+-.+++-+.
T Consensus       133 G~~e~~~N~~r~~  145 (153)
T PF11947_consen  133 GWEEFKRNWGRMW  145 (153)
T ss_pred             cHHHHHHhHHHHH
Confidence            9988877776554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=85.38  E-value=5.6  Score=30.53  Aligned_cols=94  Identities=13%  Similarity=0.027  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--HhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccC
Q 041620           21 FISSLYITGILASLIASSVTRALGRKVSILIGGVAFL--AGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMT   98 (172)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~   98 (172)
                      .-....+.++++++..|++--.+.|..-++++.....  -..+.+.-+++.|...++-++...-.....+....-+++..
T Consensus       276 veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL  355 (433)
T KOG3810|consen  276 VEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNL  355 (433)
T ss_pred             HHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhh
Confidence            3455567788899999999988887644444443333  23334455678999888888887777777777777788888


Q ss_pred             CccccccchhhhhHHH
Q 041620           99 TPKYRGTFNIGFQLCA  114 (172)
Q Consensus        99 ~~~~r~~~~~~~~~~~  114 (172)
                      +.|.-|...|++.+..
T Consensus       356 ~~e~~gLvFGiNTFvA  371 (433)
T KOG3810|consen  356 SSELFGLVFGINTFVA  371 (433)
T ss_pred             hhhhheeeeehHHHHH
Confidence            8888898888876653

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.60  E-value=3.2  Score=33.78  Aligned_cols=59  Identities=19%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      |.++.+.--+++|++..........+.-+.+|++-|..+++++....++|..+...+..
T Consensus       457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~  515 (571)
T KOG1237|consen  457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVS  515 (571)
T ss_pred             eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777899999999988888999999999999999999999999999999988876

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.50  E-value=3.7  Score=34.36  Aligned_cols=56  Identities=7%  Similarity=-0.041  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh
Q 041620           71 MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC  126 (172)
Q Consensus        71 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~  126 (172)
                      .+++..++..+..+...+.....+.+..|+|+|..++|+..+ ...+|.+-+|++-+
T Consensus       588 ~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG  644 (735)
T KOG3626|consen  588 IFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFG  644 (735)
T ss_pred             HHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhh
Confidence            344444444555555567777888899999999999999544 55678888888887

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=83.07  E-value=16  Score=26.74  Aligned_cols=98  Identities=14%  Similarity=0.021  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhh-hchhHHHHH----HHHHHHHhhhhhh-cc--c--hhHHHHHHHHHHhhhhhhhccchh
Q 041620           22 ISSLYITGILASLIASSVTRA-LGRKVSILI----GGVAFLAGSALGV-CA--F--NIYMLIFGRLLLGVGIGFGNQSVP   91 (172)
Q Consensus        22 ~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~----~~~~~~~~~~~~~-~~--~--~~~~~~~~~~l~g~~~~~~~~~~~   91 (172)
                      .-.+..|..+|.+..|.+... +.||+-+..    +.++..+...... ..  +  +...+.+..++.|++.=+.+++.-
T Consensus       147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL  226 (267)
T PF07672_consen  147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL  226 (267)
T ss_pred             HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            344445666777777777664 456654442    2333333333321 11  1  356677888888887655566666


Q ss_pred             hhhhccCCccccccchhhhhHHHHHHHHH
Q 041620           92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLS  120 (172)
Q Consensus        92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  120 (172)
                      ..-.|.= ..++.+..-.++..+++|.++
T Consensus       227 ~lPhEyK-~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  227 NLPHEYK-GYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             cChhhhc-CCCcceehhHHHHHHHHHHHH
Confidence            5555552 222222333344455555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.88
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.88
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.7
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.6
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.52
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.34
2xut_A	524	Proton/peptide symporter family protein; transport	99.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.12
2g9p_A	26	Antimicrobial peptide latarcin 2A; helix-hinge-hel	83.82

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.90  E-value=3e-23  Score=157.03  Aligned_cols=150  Identities=12%  Similarity=0.096  Sum_probs=131.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchhHHHHHHHHHHhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~   83 (172)
                      .++++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.   .++++++.+++.|++.|++.
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  131 (438)
T 3o7q_A           52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL  131 (438)
T ss_dssp             HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhH
Confidence            457789999999999999999999999999999999999999999999999999888   78899999999999999999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh-cCCCC----------------------cchHHH
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KIKGG----------------------WGWRIS  139 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~----------------------~~w~~~  139 (172)
                      +...+...+++.|++|+|+|++++++.+....+|..++|.+++ +. ...+.                      .+||+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  211 (438)
T 3o7q_A          132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP  211 (438)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence            9999999999999999999999999999999999999999988 43 22221                      019999


Q ss_pred             HHhhhHHHHHHHHhhhh
Q 041620          140 LAMAAAPASILTIGASD  156 (172)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (172)
                      |++.+....+..+...+
T Consensus       212 ~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          212 YMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98777666555544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=2.6e-23  Score=154.81  Aligned_cols=148  Identities=16%  Similarity=0.252  Sum_probs=134.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      ..+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+...++++++.+.+.|++.|++.+..
T Consensus        26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~  105 (375)
T 2gfp_A           26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG  105 (375)
T ss_dssp             HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .+....++.|++|+|+|++.+++.+....+|..++|.+++  ...+..+||+.+.+.++..++..+...+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A          106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG--LLDTMWNWRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988  5555668999999888777666553333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=2.2e-22  Score=154.57  Aligned_cols=146  Identities=16%  Similarity=0.191  Sum_probs=130.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG   86 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   86 (172)
                      ++++|.|+++.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++.+++|++.+++.|++.|++.+..
T Consensus        46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  125 (491)
T 4aps_A           46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL  125 (491)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence            45699999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620           87 NQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS  155 (172)
Q Consensus        87 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  155 (172)
                      .+...+++.|++|+++  |+++.++++...++|..++|.+++  ...+..+||+.|++.++..++..+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG--AAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  777888899999999999999998  333446899999998776665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.88  E-value=6.8e-23  Score=155.52  Aligned_cols=149  Identities=18%  Similarity=0.081  Sum_probs=132.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc----cchhHHHHHHHHHHhh
Q 041620            6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC----AFNIYMLIFGRLLLGV   81 (172)
Q Consensus         6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~   81 (172)
                      ...+++ .++++.+++.+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+    +++++.++++|++.|+
T Consensus        53 ~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  131 (451)
T 1pw4_A           53 YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW  131 (451)
T ss_dssp             HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred             HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            345677 99999999999999999999999999999999999999999999999999998    8999999999999999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHhhhhh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIGASDW  157 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~  157 (172)
                      +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++  ...+..+ ||+.|++.++..++..+...+.
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL--LGMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH--HHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999987  2223456 9999998887776655544333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.88  E-value=3.4e-22  Score=153.44  Aligned_cols=147  Identities=21%  Similarity=0.304  Sum_probs=126.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh------------------ccchhHHHH
Q 041620           12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV------------------CAFNIYMLI   73 (172)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~   73 (172)
                      +.++++.+++.+.+.+|..+|++++|+++||+|||++++++.+++.++.++++                  .++|+++++
T Consensus        51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~  130 (491)
T 4gc0_A           51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV  130 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence            44567788999999999999999999999999999999999999999888776                  468999999


Q ss_pred             HHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHH
Q 041620           74 FGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPA  147 (172)
Q Consensus        74 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~  147 (172)
                      ++|++.|++.|...+..+.+++|..|+++|++..++.+.+...|..+++.++. ....     .....||..+.+..+..
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA  210 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence            99999999999999999999999999999999999999999999998888876 3222     12357899998888877


Q ss_pred             HHHHHhhhhhc
Q 041620          148 SILTIGASDWW  158 (172)
Q Consensus       148 ~~~~~~~~~~~  158 (172)
                      ++..+...+.+
T Consensus       211 ~~~~~~~~~~p  221 (491)
T 4gc0_A          211 LLFLMLLYTVP  221 (491)
T ss_dssp             HHHHHHGGGSC
T ss_pred             hhhhhhhhcCC
Confidence            77666555544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=3.8e-20  Score=143.27  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=125.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhhhccch
Q 041620           13 FDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGFGNQSV   90 (172)
Q Consensus        13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~   90 (172)
                      .++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+...+++ +++.+++.|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999888888 99999999999999999999999


Q ss_pred             hhhhhccCCccccccchhh---hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620           91 PLYLSEMTTPKYRGTFNIG---FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA  154 (172)
Q Consensus        91 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  154 (172)
                      .+++.|++|+++|++..+.   ++...++|..++|.+++  ...+..+|++.|++.++..++..+..
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP--LLLKNFGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST--HHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877666   88899999999999987  23344689999998877766554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.70  E-value=1.9e-16  Score=120.01  Aligned_cols=149  Identities=13%  Similarity=0.019  Sum_probs=124.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-Hhhhhhhcc--chhHHHHHHHHHHhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSILIGGVAFL-AGSALGVCA--FNIYMLIFGRLLLGVG   82 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~   82 (172)
                      ++.+|.++.+.++..+...++..++.++.|++.||+  |||+.+..+..+.. ++.+...+.  .+.+...+..++.|++
T Consensus       280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            455899999999999999999999999999999999  99998888877666 666665555  3677788888899999


Q ss_pred             hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      .+...+....++.|.+|+++|++++++++....+ |..++|.+.+  ...+..+|+..|++.++..++..+...+..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999 9999999988  333455789999888777766665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.60  E-value=3.4e-15  Score=112.84  Aligned_cols=140  Identities=11%  Similarity=0.095  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620           15 SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYL   94 (172)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~   94 (172)
                      ..+.+...+...++.+++.++.++++||+|||+++..+..+.++..+...+.++.+.+.+..++.+++.+...+....+.
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777788889999999999999999999988888887776676777777777777778887776667778899


Q ss_pred             hccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           95 SEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        95 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      .|.+|++.|++..++ ++....+|..++|.+.+  ...+..+++..|.+.++..++..+....
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH--THHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998 58888899999999988  3333457888888877776665554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.53  E-value=2.7e-14  Score=109.59  Aligned_cols=145  Identities=10%  Similarity=-0.093  Sum_probs=108.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHhhhhhhcc---------chhHHHHHHH
Q 041620           11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSIL-----IGGVAFLAGSALGVCA---------FNIYMLIFGR   76 (172)
Q Consensus        11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~   76 (172)
                      .+.+..+.++..+...++..++.++.+++.||+|||+...     .+.++.+++.......         .+.+...+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW  393 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred             hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            3444455566677778888899999999999999986654     6666666666655543         2667777888


Q ss_pred             HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620           77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD  156 (172)
Q Consensus        77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  156 (172)
                      ++.|++.+...+....++.|.+|+++|++++++++....+|..++|.+.+  ...+ .++...|...+...++..+..++
T Consensus       394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT--LYNA-KSEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG--GGGG-SSTTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999989999999999999999999999999999999999999987  2222 24556676666666655544444


Q ss_pred             hc
Q 041620          157 WW  158 (172)
Q Consensus       157 ~~  158 (172)
                      ..
T Consensus       471 ~~  472 (491)
T 4aps_A          471 LS  472 (491)
T ss_dssp             C-
T ss_pred             HH
Confidence            33

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.52  E-value=4e-14  Score=106.92  Aligned_cols=135  Identities=7%  Similarity=-0.073  Sum_probs=109.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      +.+|.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.... .++.|++.+...+
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~  366 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYP  366 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999988888888777777665444 4888899988899


Q ss_pred             chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHH
Q 041620           89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPAS  148 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~  148 (172)
                      ....+..|.+|++ |+++.++.. ...+|..++|.+.+  ...+..+ ++..|.+.++..+
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG--FVSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH--HHHHHHTSSGGGGHHHHHHHH
T ss_pred             HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH--HHHHHhcchHHHHHHHHHHHH
Confidence            9999999999866 788888766 55689999999988  2233345 7777776544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=7.9e-16  Score=116.32  Aligned_cols=142  Identities=11%  Similarity=0.066  Sum_probs=97.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchh-HHHHHHHHHHhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNI-YMLIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~g~~~   83 (172)
                      ++++|.|+++.+++.+...++..+++++.|+++||+|||++++.+..+..+.....   .+.+.. ......+.+.+++.
T Consensus        35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T 2cfq_A           35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999999999999999998887765432211   122111 11234455555555


Q ss_pred             hhhccchhhhhhccCCc--cccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           84 GFGNQSVPLYLSEMTTP--KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      +...+.......++.++  ++|+...+..+....+|..++|.+++ +.   + .+|+..|++.++..++..+.
T Consensus       115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~---~-~~~~~~f~~~~~~~~~~~~~  183 (417)
T 2cfq_A          115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH---H-HCSHHHHTTTTTTTTTHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH---H-hchhHHHHHHHHHHHHHHHH
Confidence            54444444444444433  45677778877777889999999887 43   1 36899998876665444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.34  E-value=5.9e-12  Score=96.46  Aligned_cols=150  Identities=11%  Similarity=-0.038  Sum_probs=100.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhh-hh
Q 041620           10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVG-IG   84 (172)
Q Consensus        10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~-~~   84 (172)
                      ..+.+............+...++.++.+++.||+|||+.++.+.....++.+.....    .+.+...+...+...+ ..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (491)
T 4gc0_A          306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM  385 (491)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence            345566666666777778889999999999999999999998888777766554432    1222222222222222 22


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGASDWWY  159 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  159 (172)
                      ...+....+.+|.+|++.|++++++.+....++..+++.+.. +..   .....++...|++.+..+++..+..+++.|
T Consensus       386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P  464 (491)
T 4gc0_A          386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  464 (491)
T ss_dssp             TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence            234567789999999999999999999888888888877654 211   111123445677767776666665544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.15  E-value=1.6e-10  Score=89.36  Aligned_cols=108  Identities=15%  Similarity=0.039  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh----hhhch----hHHHHHHHHHHHHhhhhhhcc---------chhHHHHHHHHHHhh
Q 041620           19 TTFISSLYITGILASLIASSVT----RALGR----KVSILIGGVAFLAGSALGVCA---------FNIYMLIFGRLLLGV   81 (172)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~l~----d~~gr----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~   81 (172)
                      +.......++..+..++.+++.    ||.|+    ++.+..+.++.+++.+.....         .+.+.+.+..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            3333333445555666666654    45443    245666777777776665553         366777788899999


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC  126 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  126 (172)
                      +.+...+....+..|..|+++|++++++++....+|..++|.+.+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  462 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV  462 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.12  E-value=5.7e-12  Score=93.49  Aligned_cols=130  Identities=14%  Similarity=0.059  Sum_probs=99.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHhhhhhhc----cchhHHHHHHHHHHhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA-FLAGSALGVC----AFNIYMLIFGRLLLGVGI   83 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~l~g~~~   83 (172)
                      +++|.++.+.+...+...++..++.++.+++.||++++  +..+... ...+......    .++.+.+.+..++.|++.
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  305 (375)
T 2gfp_A          228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA  305 (375)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence            34788899999999999999999999999999999983  2333333 3333222222    136677778889999999


Q ss_pred             hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhh
Q 041620           84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMA  143 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~  143 (172)
                      +...+....+..|..| |+|+++.++.+....+|..++|.+.+  ...+..+++..+...
T Consensus       306 ~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          306 GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA--MLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT--HHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH--HHhcCCcccHHHHHH
Confidence            9999999999999998 89999999999999999999988877  222334566666553

>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}

Probab=83.82  E-value=0.56  Score=19.42  Aligned_cols=14  Identities=21%  Similarity=0.460  Sum_probs=11.5

Q ss_pred             hhhhhhhhhchhHH
Q 041620           35 IASSVTRALGRKVS   48 (172)
Q Consensus        35 ~~g~l~d~~gr~~~   48 (172)
                      ++|.+..+||||.+
T Consensus         2 lfgklikkfgrkai   15 (26)
T 2g9p_A            2 LFGKLIKKFGRKAI   15 (26)
T ss_dssp             HHHHHHHHHTSHHH
T ss_pred             cHHHHHHHHhHHHH
Confidence            46889999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.67
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.59
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.2e-22  Score=149.38  Aligned_cols=148  Identities=18%  Similarity=0.061  Sum_probs=128.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhhhh
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVGIG   84 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~   84 (172)
                      +++|+|++|.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++.    ++++.+++.|++.|++.+
T Consensus        52 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (447)
T d1pw4a_          52 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG  131 (447)
T ss_dssp             TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhh
Confidence            3579999999999999999999999999999999999999999999999888877665    478899999999999999


Q ss_pred             hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ...+....++.|++|+++|++++++.+.+..+|..++|.++. .....  .+||+.+++.+...++..+..++..
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998876 32222  2688888887777666655544444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=8.7e-17  Score=117.47  Aligned_cols=148  Identities=10%  Similarity=0.073  Sum_probs=126.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620            9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ   88 (172)
Q Consensus         9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   88 (172)
                      ++.+.+....+.......++..++..+.+++.||+|+|+.+..+.++.++..+...+.++.+...+..++.|++.+...+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            44456667777788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           89 SVPLYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        89 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      ....++.|.+|+|+|++..++ .+....+|..++|.+.+  ...+..|++..|++.++..++..++..+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998 46677899999999988  444556899999888777766655554444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8e-15  Score=108.80  Aligned_cols=150  Identities=14%  Similarity=-0.002  Sum_probs=112.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH---HHHhhhhhh--ccchhHHHHHHHHHHhh
Q 041620            7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA---FLAGSALGV--CAFNIYMLIFGRLLLGV   81 (172)
Q Consensus         7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l~g~   81 (172)
                      .++..+.+..+.++......++..++.++.|++.||++|++........   ..+......  ...+.+...+..++.|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  355 (447)
T d1pw4a_         276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  355 (447)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999987543333222   222222222  23567777788888899


Q ss_pred             hhhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620           82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW  158 (172)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  158 (172)
                      +.+...+....+..|.+|++.|+++.++.+....+ |...+|.+.+  ...+..||+..+++.....++..++.....
T Consensus       356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999998877766 5567888877  444566889888877666666555444444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=8.4e-15  Score=106.74  Aligned_cols=142  Identities=10%  Similarity=0.032  Sum_probs=98.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHhhhh
Q 041620            8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYM----LIFGRLLLGVGI   83 (172)
Q Consensus         8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~~~   83 (172)
                      ++++|.|+++.|++.+...++..+++++.|+++||+|||++++.+.....++........+...    ....+.+.+.+.
T Consensus        35 ~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T d1pv7a_          35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence            4568999999999999999999999999999999999999999998888888777766554433    334455555555


Q ss_pred             hhhccchhhhhhccCCc--cccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620           84 GFGNQSVPLYLSEMTTP--KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG  153 (172)
Q Consensus        84 ~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~  153 (172)
                      +...........+..++  +++....+........+..++|.+++ +.   + .+|+..+........+..+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~~~~~~  183 (417)
T d1pv7a_         115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             GGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH---H-HCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc---c-ccccccccchhhHHHHHHHH
Confidence            54444444444333332  34556677777788888888888887 32   1 24555554444444444333