Citrus Sinensis ID: 041627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS
Secondary Structure (PSIPRED)
ccHHHHcccccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcHcEHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHcccccc
Coil and Loop (DISEMBL)
mqafqqftgintvmyysptIVQMAgfqsnqlallpsLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITffapgmgpvpwtvnseVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFvpetqgltFLEVEQRWKerawgsscntesllehgnss
Flexible Loop (DISEMBL)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKErawgsscntesllehgnss
Low Complexity Region (SEG)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTflilagiavlavvfvilfvPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS
Disordered region (IsUnstruct)
****QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERAWGS**************
Disordered Region (DISOPRED)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQR**********************
Disordered Region (DISEMBL)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKE*******************
Disordered Region (DISPRO)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERA*****************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q8VZR6	509	Inositol transporter 1 OS	yes	no	1.0	0.400	0.723	8e-85
Q9C757	580	Probable inositol transpo	no	no	0.539	0.189	0.527	1e-29
Q01440	547	Membrane transporter D1 O	N/A	no	0.892	0.332	0.325	8e-26
Q9ZQP6	580	Probable inositol transpo	no	no	0.509	0.179	0.490	2e-25
O23492	582	Inositol transporter 4 OS	no	no	0.509	0.178	0.490	3e-25
Q17NV8	806	Facilitated trehalose tra	N/A	no	0.887	0.224	0.319	3e-24
B4J913	929	Facilitated trehalose tra	N/A	no	0.887	0.194	0.324	6e-24
B4P624	856	Facilitated trehalose tra	N/A	no	0.887	0.211	0.319	6e-24
B4MYA4	872	Facilitated trehalose tra	N/A	no	0.887	0.207	0.318	8e-24
Q9ZNS0	508	Probable polyol transport	no	no	0.872	0.350	0.338	9e-24

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  312 bits (800), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 165/228 (72%), Positives = 181/228 (79%), Gaps = 24/228 (10%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLAL  SL+VA  NA GT+VGIY IDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query: 61  KLALSSLAGVIISLVLLSWAF---------------ISVIGLALYITFFAPGMGPVPWTV 105
           KLALSSL GVIISL++LS +F               ++V+GLALYI FFAPGMGPVPWTV
Sbjct: 342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query: 106 NSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI 165
           NSE+Y +QYRGICGGMSATVNWISNLIVAQ FLT+A+  GTG TFLILAGIAVLAV+FVI
Sbjct: 402 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 461

Query: 166 LFVPETQGLTFLEVEQRWKERA------WGSSC---NTESLLEHGNSS 204
           +FVPETQGLTF EVEQ WKERA      WGSS    N E LLE G+ S
Sbjct: 462 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS 509

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 87/110 (79%)

Query: 78  SWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF 137
           ++ + +++GL LYI FF+PGMG VPW VNSE+Y  ++RGICGG++AT NWISNLIVAQ+F
Sbjct: 451 NFGWFALLGLGLYIIFFSPGMGTVPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSF 510

Query: 138 LTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERA 187
           L++ + +GT  TFLI   I+V+A++FV++ VPET+G+   E+E+  + R+
Sbjct: 511 LSLTEAIGTSWTFLIFGVISVIALLFVMVCVPETKGMPMEEIEKMLERRS 560

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1

 Score =  116 bits (291), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 24/206 (11%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +Q  QQF+GINT+MYYS  I+  AGF+   + ++ S+ +A  NA+ T V I+ +D FGR+
Sbjct: 246 LQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRR 305

Query: 61  KLALSSLAGVIISLVLLSWAFISVIG--LALYITF-----------------FAPGMGPV 101
           ++ L S+ G ++ LV+     I++IG  +   I++                 +APG+G +
Sbjct: 306 RMLLISVFGCLVLLVV-----IAIIGFFIGTRISYSVGGGLFLALLAVFLALYAPGIGCI 360

Query: 102 PWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV 161
           PW +  E++    R     ++   NW +N++V+Q F  +   +G G TF I++G+  L  
Sbjct: 361 PWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISGLMALGC 420

Query: 162 VFVILFVPETQGLTFLEVEQRWKERA 187
           +FV  F  ET+GLT  +++  +++RA
Sbjct: 421 IFVYFFAVETKGLTLEQIDNMFRKRA 446

Leishmania donovani (taxid: 5661)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 77/104 (74%)

Query: 78  SWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF 137
            + +++++ L LYI  +APGMG VPW VNSE+Y  +YRG+ GG++A  NW+SNL+V++ F
Sbjct: 454 KFGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETF 513

Query: 138 LTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ 181
           LT+ + VG+  TFL+ AG + + + F+ L VPET+GL F EVE+
Sbjct: 514 LTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEK 557

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 77/104 (74%)

Query: 78  SWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF 137
            + F++++ L LYI  +APGMG VPW VNSE+Y  +YRG+ GG++A  NW+SNLIV+++F
Sbjct: 455 KFGFLAIVFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESF 514

Query: 138 LTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ 181
           L++   +G+  TFL+ AG + + + F+ L VPET+GL F EVE+
Sbjct: 515 LSLTHALGSSGTFLLFAGFSTIGLFFIWLLVPETKGLQFEEVEK 558

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 16/197 (8%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           FQQ +GIN V++Y+  I Q AG   ++   L +++V   N + T +   LID  GRK L 
Sbjct: 595 FQQLSGINAVIFYTVQIFQDAGSTIDEN--LCTIIVGVVNFIATFIATMLIDRLGRKMLL 652

Query: 64  LSSLAGVIISLVLLSWAF--------ISVIG------LALYITFFAPGMGPVPWTVNSEV 109
             S   +II+L+ L   F        +S +G        +Y+  F+ G GP+PW +  E+
Sbjct: 653 YISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEI 712

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
              + RG    ++   NW    IV + F  + + +GT  TF +   I V+ + FVI +VP
Sbjct: 713 LPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVP 772

Query: 170 ETQGLTFLEVEQRWKER 186
           ETQG +  ++E++   R
Sbjct: 773 ETQGKSLEDIERKMMGR 789

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 16/197 (8%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           FQQ +GIN V++Y+  I + AG  S     + +++V   N + T +GI LID  GRK L 
Sbjct: 718 FQQLSGINAVIFYTVQIFKDAG--STLDGNVCTIIVGTVNFIATFIGILLIDRAGRKILL 775

Query: 64  LSSLAGVIISLVLLSWAF--------ISVIGL------ALYITFFAPGMGPVPWTVNSEV 109
             S   +I++L +L   F        +S +GL       +YI  F+ G GP+PW +  E+
Sbjct: 776 YVSNIAMILTLFVLGGFFYCKANGMDVSNVGLLPLCCFVVYILGFSLGFGPIPWLMMGEI 835

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
              + RG    ++   NW    +V ++FL +  L+G    F +   I  + + FVI  VP
Sbjct: 836 LPAKIRGSAASVATAFNWTCTFVVTKSFLDMIKLIGAHGAFWLFGVICCIGMFFVIFCVP 895

Query: 170 ETQGLTFLEVEQRWKER 186
           ETQG T  ++E++   R
Sbjct: 896 ETQGKTLEDIERKMMGR 912

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila grimshawi (taxid: 7222)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 16/197 (8%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           FQQF+GIN V++Y+  I + AG  S     + +++V   N V T +GI LID  GRK L 
Sbjct: 645 FQQFSGINAVIFYTVQIFKDAG--STIDGNVCTIIVGVVNFVATFIGILLIDRAGRKILL 702

Query: 64  LSSLAGVIISLVLLSWAF--------ISVIG------LALYITFFAPGMGPVPWTVNSEV 109
            +S   ++++L +L   F        +S +G        +YI  F+ G GP+PW +  E+
Sbjct: 703 YASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPWLMMGEI 762

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
              + RG    ++ + NW    +V + F  +   +G    F +   I  + + FVIL+VP
Sbjct: 763 LPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVILYVP 822

Query: 170 ETQGLTFLEVEQRWKER 186
           ETQG T  ++E++   R
Sbjct: 823 ETQGKTLEDIERKMMGR 839

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 17/198 (8%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           FQQ +GIN V++Y+  I + AG  S     + +++V   N + T +GI LID  GRK L 
Sbjct: 660 FQQLSGINAVIFYTVQIFKDAG--STIDGNVCTIIVGIVNFMATFIGIILIDRAGRKILL 717

Query: 64  LSSLAGVIISLVLLSWAF---------ISVIG------LALYITFFAPGMGPVPWTVNSE 108
             S   +II+L +L   F         +S +G        +YI  F+ G GP+PW +  E
Sbjct: 718 YVSNVAMIITLFVLGGFFYCKDKAGIDVSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGE 777

Query: 109 VYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV 168
           +   + RG    ++   NW    +V + F  + D++G+   F +   I  + + FVI++V
Sbjct: 778 ILPAKIRGSAASVATAFNWTCTFVVTKTFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYV 837

Query: 169 PETQGLTFLEVEQRWKER 186
           PETQG T  ++E++   R
Sbjct: 838 PETQGKTLEDIERKMMGR 855

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila willistoni (taxid: 7260)

>sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 14/192 (7%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           F+  TGI  V+ YSP I + AG  S    LL ++ V  T A   I+  +L+D  GR+KL 
Sbjct: 290 FEHATGIEAVVLYSPRIFKKAGVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLL 349

Query: 64  LSSLAGVIISLV-------------LLSWAF-ISVIGLALYITFFAPGMGPVPWTVNSEV 109
           L+S  G++ +L               L+WA  +S++    ++ FF+ G+GP+ W  +SE+
Sbjct: 350 LTSTGGMVFALTSLAVSLTMVQRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEI 409

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
           +  + R     +   VN I N  V+ +FL++   + TG  F + AGIAV A  F    +P
Sbjct: 410 FPLRLRAQGASIGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLP 469

Query: 170 ETQGLTFLEVEQ 181
           ET+GL   E+E+
Sbjct: 470 ETKGLPLEEMEK 481

Plasma membrane sugar-proton symporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
255577741	307	sugar transporter, putative [Ricinus com	1.0	0.664	0.756	1e-88
224106503	307	predicted protein [Populus trichocarpa]	1.0	0.664	0.761	1e-88
224133102	489	predicted protein [Populus trichocarpa]	0.990	0.413	0.763	3e-87
224093162	287	predicted protein [Populus trichocarpa]	1.0	0.710	0.756	1e-86
2289003	521	putative membrane transporter [Arabidops	1.0	0.391	0.723	3e-83
30689342	509	putative inositol transporter 1 [Arabido	1.0	0.400	0.723	4e-83
449468830	495	PREDICTED: inositol transporter 1-like [	0.970	0.4	0.731	1e-82
297824309	521	hypothetical protein ARALYDRAFT_322009 [	1.0	0.391	0.719	1e-82
357501429	500	hypothetical protein MTR_7g005910 [Medic	0.990	0.404	0.706	9e-80
116310336	506	OSIGBa0130B08.11 [Oryza sativa Indica Gr	0.970	0.391	0.674	3e-78

>gi|255577741|ref|XP_002529745.1| sugar transporter, putative [Ricinus communis] gi|223530743|gb|EEF32611.1| sugar transporter, putative [Ricinus communis]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 185/218 (84%), Gaps = 14/218 (6%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLALL SL+VA  NA GTI+GIYLIDHFGR 
Sbjct: 90  LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLIVAAMNAAGTILGIYLIDHFGRT 149

Query: 61  KLALSSLAGVIISLVLLSWAF--------------ISVIGLALYITFFAPGMGPVPWTVN 106
           KLALSSL GVI+SL +L+ AF              ++V+GLALYI FFAPGMGPVPWTVN
Sbjct: 150 KLALSSLTGVIVSLFILAGAFFGQSSDSSSGIYGWLAVVGLALYIAFFAPGMGPVPWTVN 209

Query: 107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
           SE+Y E YRGICGGMSATVNWISNLIVAQ FL+VA+ VGTG+TFLILAG+A+ A+VF+IL
Sbjct: 210 SEIYPEAYRGICGGMSATVNWISNLIVAQTFLSVANAVGTGATFLILAGVAIAAIVFIIL 269

Query: 167 FVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS 204
           FVPET+GLTF+EVEQ WKERAWGSS NTESLLE GN +
Sbjct: 270 FVPETKGLTFVEVEQIWKERAWGSSYNTESLLERGNET 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106503|ref|XP_002333672.1| predicted protein [Populus trichocarpa] gi|222837972|gb|EEE76337.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 184/218 (84%), Gaps = 14/218 (6%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLALL SLV+A  NA GT++GIYLIDHFGRK
Sbjct: 90  LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRK 149

Query: 61  KLALSSLAGVIISLVLLSWAF--------------ISVIGLALYITFFAPGMGPVPWTVN 106
           KLA+SSLAGVI SL +L+ AF              I+V+GLALYI  F+PGMGPVPWTVN
Sbjct: 150 KLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALYIACFSPGMGPVPWTVN 209

Query: 107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
           SE+Y EQYRGICGGMSATVNWISNLIVAQ FL++A+ VGTGSTFL+LAGIAVLAVVFVI+
Sbjct: 210 SEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIM 269

Query: 167 FVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS 204
           +VPET GL F+EVEQ WKERAWGSS NTESLLE GN  
Sbjct: 270 YVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQGNDK 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133102|ref|XP_002327961.1| predicted protein [Populus trichocarpa] gi|222837370|gb|EEE75749.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/216 (76%), Positives = 183/216 (84%), Gaps = 14/216 (6%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLALL SLV+A  NA GT++GIYLIDHFGRK
Sbjct: 274 LQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRK 333

Query: 61  KLALSSLAGVIISLVLLSWAF--------------ISVIGLALYITFFAPGMGPVPWTVN 106
           KLA+SSLAGVI SL +L+ AF              I+V+GLAL I  F+PGMGPVPWTVN
Sbjct: 334 KLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALCIACFSPGMGPVPWTVN 393

Query: 107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
           SE+Y EQYRGICGGMSATVNWISNLIVAQ FL++A+ VGTGSTFL+LAGIAVLAVVFVI+
Sbjct: 394 SEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIM 453

Query: 167 FVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGN 202
           +VPET GL F+EVEQ WKERAWGSS NTESLLE GN
Sbjct: 454 YVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQGN 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093162|ref|XP_002309815.1| predicted protein [Populus trichocarpa] gi|222852718|gb|EEE90265.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 184/218 (84%), Gaps = 14/218 (6%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF+SNQLALL SL+VA  NA GT++GIYLIDHFGRK
Sbjct: 70  LQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHFGRK 129

Query: 61  KLALSSLAGVIISLVLLSWAF--------------ISVIGLALYITFFAPGMGPVPWTVN 106
           KLALSSL GVI SLV+L+ AF              I+V+GLALYI FF+PGMGPVPWTVN
Sbjct: 130 KLALSSLTGVIASLVVLAGAFFGKSSGSSNELFGWIAVLGLALYIAFFSPGMGPVPWTVN 189

Query: 107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
           SE+Y EQYRGICGGMSATVNWISNLIVA+ FL+VA+ VGTG TF+ILA IAVLA VFVI+
Sbjct: 190 SEIYPEQYRGICGGMSATVNWISNLIVAETFLSVAEAVGTGWTFVILACIAVLAFVFVIV 249

Query: 167 FVPETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS 204
           +VPET GLTF+EVEQ WKERAWGS  NTESLLE GN +
Sbjct: 250 YVPETVGLTFVEVEQIWKERAWGSGYNTESLLERGNDN 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2289003|gb|AAB64332.1| putative membrane transporter [Arabidopsis thaliana]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/228 (72%), Positives = 181/228 (79%), Gaps = 24/228 (10%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLAL  SL+VA  NA GT+VGIY IDH GRK
Sbjct: 294 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 353

Query: 61  KLALSSLAGVIISLVLLSWAF---------------ISVIGLALYITFFAPGMGPVPWTV 105
           KLALSSL GVIISL++LS +F               ++V+GLALYI FFAPGMGPVPWTV
Sbjct: 354 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 413

Query: 106 NSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI 165
           NSE+Y +QYRGICGGMSATVNWISNLIVAQ FLT+A+  GTG TFLILAGIAVLAV+FVI
Sbjct: 414 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 473

Query: 166 LFVPETQGLTFLEVEQRWKERA------WGSSC---NTESLLEHGNSS 204
           +FVPETQGLTF EVEQ WKERA      WGSS    N E LLE G+ S
Sbjct: 474 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689342|ref|NP_850393.1| putative inositol transporter 1 [Arabidopsis thaliana] gi|75331205|sp|Q8VZR6.1|INT1_ARATH RecName: Full=Inositol transporter 1 gi|17380890|gb|AAL36257.1| putative membrane transporter protein [Arabidopsis thaliana] gi|20465939|gb|AAM20155.1| putative membrane transporter protein [Arabidopsis thaliana] gi|84617967|emb|CAJ00303.1| inositol transporter 1 [Arabidopsis thaliana] gi|330255158|gb|AEC10252.1| putative inositol transporter 1 [Arabidopsis thaliana]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/228 (72%), Positives = 181/228 (79%), Gaps = 24/228 (10%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLAL  SL+VA  NA GT+VGIY IDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query: 61  KLALSSLAGVIISLVLLSWAF---------------ISVIGLALYITFFAPGMGPVPWTV 105
           KLALSSL GVIISL++LS +F               ++V+GLALYI FFAPGMGPVPWTV
Sbjct: 342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query: 106 NSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI 165
           NSE+Y +QYRGICGGMSATVNWISNLIVAQ FLT+A+  GTG TFLILAGIAVLAV+FVI
Sbjct: 402 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 461

Query: 166 LFVPETQGLTFLEVEQRWKERA------WGSSC---NTESLLEHGNSS 204
           +FVPETQGLTF EVEQ WKERA      WGSS    N E LLE G+ S
Sbjct: 462 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468830|ref|XP_004152124.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] gi|449484700|ref|XP_004156956.1| PREDICTED: inositol transporter 1-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 177/212 (83%), Gaps = 14/212 (6%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF+SNQLALL SL+VA  NA GT++GIYLIDH GRK
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHVGRK 341

Query: 61  KLALSSLAGVIISLVLLSWAF--------------ISVIGLALYITFFAPGMGPVPWTVN 106
           KLA+SSL+GVI+SL +LS A               I+VIGLALYI FF+PGMGPVPWTVN
Sbjct: 342 KLAISSLSGVIVSLAILSGALFAGQYGSTNGLNGCIAVIGLALYIAFFSPGMGPVPWTVN 401

Query: 107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
           SE+Y E YRG+CGGMSATVNWISNLIVAQ FL++A++ GTG TFLI A IAVLA+VFV++
Sbjct: 402 SEIYPEAYRGLCGGMSATVNWISNLIVAQTFLSLAEVAGTGLTFLIFAAIAVLAIVFVVV 461

Query: 167 FVPETQGLTFLEVEQRWKERAWGSSCNTESLL 198
           +VPETQGLTF EVE+ WKERAWG   NTESLL
Sbjct: 462 YVPETQGLTFEEVERIWKERAWGRDSNTESLL 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824309|ref|XP_002880037.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] gi|297325876|gb|EFH56296.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/228 (71%), Positives = 180/228 (78%), Gaps = 24/228 (10%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SNQLAL  SL+VA  NA GT+VGIY IDH GRK
Sbjct: 294 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 353

Query: 61  KLALSSLAGVIISLVLLSWAF---------------ISVIGLALYITFFAPGMGPVPWTV 105
           KLALSSL GVIISL++LS +F               ++V+GLALYI FFAPGMGPVPWTV
Sbjct: 354 KLALSSLFGVIISLLILSVSFFKQSDASSDGGLYGWLAVLGLALYIAFFAPGMGPVPWTV 413

Query: 106 NSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI 165
           NSE+Y +QYRGICGGMSATVNWISNLIVAQ FLT+A+  GTG TFLILAGIA LAV+FVI
Sbjct: 414 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAFLAVIFVI 473

Query: 166 LFVPETQGLTFLEVEQRWKERA------WGSSC---NTESLLEHGNSS 204
           +FVPETQGLTF EVEQ WKERA      WGSS    N E LLE G+ S
Sbjct: 474 VFVPETQGLTFSEVEQIWKERAYGDISGWGSSSDSNNMEGLLEQGSQS 521

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501429|ref|XP_003621003.1| hypothetical protein MTR_7g005910 [Medicago truncatula] gi|124365541|gb|ABN09775.1| General substrate transporter [Medicago truncatula] gi|355496018|gb|AES77221.1| hypothetical protein MTR_7g005910 [Medicago truncatula]

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 180/215 (83%), Gaps = 13/215 (6%)

Query: 3   AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKL 62
           AFQQFTGINTVMYYSPTIVQMAGF +NQLALL SL+VAG NAVGTI+GIYLID+ GRKKL
Sbjct: 286 AFQQFTGINTVMYYSPTIVQMAGFHANQLALLLSLIVAGMNAVGTILGIYLIDNTGRKKL 345

Query: 63  ALSSLAGVIISLVLLSWAF-------------ISVIGLALYITFFAPGMGPVPWTVNSEV 109
           ALSSLAGVI SL++LS AF             ++VIGL LYI FF+PGMGPVPWT+NSE+
Sbjct: 346 ALSSLAGVIASLIMLSVAFYKQSSSTNEVYGWLAVIGLGLYIGFFSPGMGPVPWTINSEI 405

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
           Y E+YRGICGGM+ATV WISNLIV+++FL++AD +G  STFLI+A IAV+A +FV+L+VP
Sbjct: 406 YPEEYRGICGGMAATVCWISNLIVSESFLSIADAIGIASTFLIIAVIAVVAFLFVLLYVP 465

Query: 170 ETQGLTFLEVEQRWKERAWGSSCNTESLLEHGNSS 204
           ETQGLTF EVE  WKERAWG + NT++LLE G+ S
Sbjct: 466 ETQGLTFDEVELIWKERAWGKNPNTQNLLEQGSQS 500

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116310336|emb|CAH67351.1| OSIGBa0130B08.11 [Oryza sativa Indica Group]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/221 (67%), Positives = 174/221 (78%), Gaps = 23/221 (10%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +QAFQQFTGINTVMYYSPTIVQMAGF SN+LALL SL+VAG NA GTIVGIYLID  GR+
Sbjct: 282 LQAFQQFTGINTVMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIVGIYLIDRCGRR 341

Query: 61  KLALSSLAGVIISLVLLSWAFI-----------------------SVIGLALYITFFAPG 97
           +LAL+SLAGV++SL +L+ AFI                       +V GLALYI FF+PG
Sbjct: 342 RLALTSLAGVVVSLAILAMAFILQSSSDICSNALNGACQGALGWFAVAGLALYIAFFSPG 401

Query: 98  MGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIA 157
           MGPVPW VNSE+Y E YRG+CGGMSATVNW+SNLIVAQ FL++  LVGTG TFLI+AGIA
Sbjct: 402 MGPVPWAVNSEIYPEAYRGMCGGMSATVNWVSNLIVAQTFLSIVGLVGTGLTFLIIAGIA 461

Query: 158 VLAVVFVILFVPETQGLTFLEVEQRWKERAWGSSCNTESLL 198
           VLA +FV L+VPET+GL+F +VE  WKERAWG+ CN +SLL
Sbjct: 462 VLAFIFVALYVPETKGLSFEQVELLWKERAWGNQCNRQSLL 502

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	1.0	0.400	0.649	1.5e-67
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.397	0.139	0.679	5.2e-48
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.504	0.177	0.427	1.6e-40
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.504	0.176	0.427	5.6e-40
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.455	0.145	0.419	2e-33
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.455	0.143	0.440	2.1e-33
RGD|621814	637	Slc2a13 "solute carrier family	0.455	0.145	0.419	2.6e-33
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.455	0.143	0.430	8.9e-33
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.455	0.142	0.440	1.2e-32
UNIPROTKB|K7GRK4	230	K7GRK4 "Uncharacterized protei	0.308	0.273	0.492	4.1e-28

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 148/228 (64%), Positives = 162/228 (71%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +QAFQQFTGINTVMYYSPTIVQMAGF SNQLAL  SL+VA  NA GT+VGIY IDH GRK
Sbjct:   282 LQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRK 341

Query:    61 KLALSSLAGVIISLVLLSWAF---------------ISVIGLALYITFFAPGMGPVPWTV 105
             KLALSSL GVIISL++LS +F               ++V+GLALYI FFAPGMGPVPWTV
Sbjct:   342 KLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTV 401

Query:   106 NSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTXXXXXXXXXXXXXXXX 165
             NSE+Y +QYRGICGGMSATVNWISNLIVAQ FLT+A+  GTG T                
Sbjct:   402 NSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVI 461

Query:   166 XXXPETQGLTFLEVEQRWKERA------WGSSC---NTESLLEHGNSS 204
                PETQGLTF EVEQ WKERA      WGSS    N E LLE G+ S
Sbjct:   462 VFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS 509

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.2e-48, Sum P(2) = 5.2e-48
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQF GINTVMYYSPTIVQ+AGF SN+ ALL SLV AG NA G+I+ IY ID  GRK
Sbjct:   282 LQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRK 341

Query:    61 KLALSSLAGVIISLVLLSWAF 81
             KL + SL GVIISL +L+  F
Sbjct:   342 KLLIISLFGVIISLGILTGVF 362

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
 Identities = 44/103 (42%), Positives = 65/103 (63%)

Query:    79 WAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFL 138
             + +++++ L LYI  +APGMG VPW VNSE+Y  +YRG+ GG++A  NW+SNL+V++ FL
Sbjct:   455 FGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFL 514

Query:   139 TVADLVGTGSTXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQ 181
             T+ + VG+  T                   PET+GL F EVE+
Sbjct:   515 TLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEK 557

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
 Identities = 44/103 (42%), Positives = 65/103 (63%)

Query:    79 WAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFL 138
             + F++++ L LYI  +APGMG VPW VNSE+Y  +YRG+ GG++A  NW+SNLIV+++FL
Sbjct:   456 FGFLAIVFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFL 515

Query:   139 TVADLVGTGSTXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQ 181
             ++   +G+  T                   PET+GL F EVE+
Sbjct:   516 SLTHALGSSGTFLLFAGFSTIGLFFIWLLVPETKGLQFEEVEK 558

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
 Identities = 39/93 (41%), Positives = 66/93 (70%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQ +GINT+MYYS TI+QM+G + ++LA+  + + A TN + T+VG++L++  GR+
Sbjct:   321 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 380

Query:    61 KLALSSLAGVIISLVLLSWAFISVIGLALYITF 93
             KL   SLAG  ++L++L+  F+    ++  +TF
Sbjct:   381 KLTFGSLAGTTVALIILALGFLLSAQVSPRVTF 413

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
 Identities = 41/93 (44%), Positives = 66/93 (70%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQ +GINT+MYYS TI+QM+G + ++LA+  + V A TN + T+VG++L++  GR+
Sbjct:   332 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 391

Query:    61 KLALSSLAGVIISLVLLSWAFISVIGLALYITF 93
             KL   SLAG  ++L++L+  F+    ++  ITF
Sbjct:   392 KLTFGSLAGTTVALIILALGFVLSAQVSPRITF 424

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
 Identities = 39/93 (41%), Positives = 65/93 (69%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQ +GINT+MYYS TI+QM+G + ++LA+  + + A TN + T+VG++L++  GR+
Sbjct:   321 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 380

Query:    61 KLALSSLAGVIISLVLLSWAFISVIGLALYITF 93
             KL   SLAG  ++L +L+  F+    ++  +TF
Sbjct:   381 KLTFGSLAGTTVALTILALGFLLSAQVSPRVTF 413

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 8.9e-33, Sum P(2) = 8.9e-33
 Identities = 40/93 (43%), Positives = 66/93 (70%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQ +GINT+MYYS TI+QM+G + ++LA+  + + A TN + T+VG++L++  GR+
Sbjct:   332 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRR 391

Query:    61 KLALSSLAGVIISLVLLSWAFISVIGLALYITF 93
             KL   SLAG  ++L++L+  F+    ++  ITF
Sbjct:   392 KLTFGSLAGTTVALIILALGFLLSAQVSPPITF 424

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 211 (79.3 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 41/93 (44%), Positives = 66/93 (70%)

Query:     1 MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
             +Q FQQ +GINT+MYYS TI+QM+G + ++LA+  + V A TN + T+VG++L++  GR+
Sbjct:   336 LQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRR 395

Query:    61 KLALSSLAGVIISLVLLSWAFISVIGLALYITF 93
             KL   SLAG  ++L++L+  F+    ++  ITF
Sbjct:   396 KLTFGSLAGTTVALLVLALGFLLSAQVSPRITF 428

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|K7GRK4 K7GRK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query:    78 SWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF 137
             SW   +++GL LY+ FFAPGMGP+PWTVNSE+Y    R      S+ +NWI N++V+  F
Sbjct:   162 SWT--ALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTF 219

Query:   138 LTVAD 142
             L  A+
Sbjct:   220 LHTAE 224

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZR6	INT1_ARATH	No assigned EC number	0.7236	1.0	0.4007	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0696000101	hypothetical protein (307 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.299.19.1	annotation not avaliable (193 aa)			•						0.444
	eugene3.10530002	annotation not avaliable (163 aa)			•						0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-40
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-39
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-26
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-11
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-07
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	9e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	9e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  141 bits (357), Expect = 8e-40
 Identities = 76/192 (39%), Positives = 109/192 (56%), Gaps = 14/192 (7%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +Q FQQFTGIN +MYYSPTI + AG  S   A L S++V   N   T V I+L+D FGR+
Sbjct: 291 LQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349

Query: 61  KLALSSLAGVIISLVLL-------------SWAFISVIGLALYITFFAPGMGPVPWTVNS 107
            L L   AG+ I L +L             S   ++++ + L+I FFA G GPVPW + S
Sbjct: 350 PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVS 409

Query: 108 EVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILF 167
           E++    R     ++   NW++N IV   F T+ + +G G  F+   G+ VL ++FV  F
Sbjct: 410 EIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469

Query: 168 VPETQGLTFLEV 179
           +PET+G T  E+
Sbjct: 470 LPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  138 bits (351), Expect = 3e-39
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 15/194 (7%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +Q FQQ TGIN + YYSPTI +  G   + L    +++V   N V T + I+L+D FGR+
Sbjct: 260 LQIFQQLTGINAIFYYSPTIFETLGLSDSLLV---TIIVGVVNFVFTFIAIFLVDRFGRR 316

Query: 61  KLALSSLAGVIISLVLL-----------SWAFISVIGLALYITFFAPGMGPVPWTVNSEV 109
            L L   AG+ I  ++L               ++++ + L+I FFA G GPVPW + SE+
Sbjct: 317 PLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSEL 376

Query: 110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
           +    R     ++   NW++N ++   F  +   +G G  FL+ AG+ VL ++FV  FVP
Sbjct: 377 FPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVP 435

Query: 170 ETQGLTFLEVEQRW 183
           ET+G T  E+++ +
Sbjct: 436 ETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  104 bits (260), Expect = 3e-26
 Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 14/197 (7%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           FQQF GIN V+YY+P I +  G  ++  ALL +++V   N   T++ I  +D FGRK L 
Sbjct: 281 FQQFVGINVVLYYAPEIFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339

Query: 64  LSSLAGVIISLVLLSWAF-------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG 116
           +    G+ I +  L  AF       ++++ +  Y+  FA   GPV W + SE++    RG
Sbjct: 340 IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399

Query: 117 ICGGMSATVNWISNLIVAQNF------LTVADLVGTGSTFLILAGIAVLAVVFVILFVPE 170
               ++    WI+N  V+  F        +      G ++ I   + VLA +F+  FVPE
Sbjct: 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459

Query: 171 TQGLTFLEVEQRWKERA 187
           T+G T  E+E  W+   
Sbjct: 460 TKGKTLEEMEALWEPET 476

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 3/171 (1%)

Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +  F    G   ++ Y P  +Q     S   A L   +      +G ++G  L D  GR+
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 61  K-LALSSLAGVIISLVLLSWAFISVIGLALY--ITFFAPGMGPVPWTVNSEVYREQYRGI 117
           + L L  L    + L+LL+ A    + L     + F      P   T+ SE+   + RG 
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 118 CGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV 168
             G+  T   +   +       + D  G G  FLILA +A+LA + ++L  
Sbjct: 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 15  YYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKK------------- 61
            + PT +      S   A   + +      +G I+G  L D   R+              
Sbjct: 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA 295

Query: 62  LALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM 121
             + SL     + V + +A ++++ L     FF  G G + W + S+       G+ GG+
Sbjct: 296 GLVLSLLMFATNYVNIPYAALALVALG----FFGLGAGAIGWALISDNAPGNIAGLTGGL 351

Query: 122 SATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV 168
             ++  +  ++       +A   G+ +  L++     L      L +
Sbjct: 352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 24/162 (14%)

Query: 37  LVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL-----SWAFISVIG-LALY 90
           + +AGT   G  V ++L+D  GRK +    L G  I  VL      ++  +S  G LA+Y
Sbjct: 343 IALAGT-VPGYWVTVFLVDIIGRKPI---QLMGFFILTVLFFVLGFAYNHLSTHGFLAIY 398

Query: 91  -ITFFAPGMGPVPWT--VNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD----- 142
            +  F    GP   T  V  EV+  +YR    G+SA       +I    FL +A      
Sbjct: 399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458

Query: 143 -----LVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEV 179
                 +  G    I A    L ++F +L +PET+G +  E+
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 3/176 (1%)

Query: 4   FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA 63
           F        +    P + +  G  ++Q  L+ S    G  A+G+++  YL D FGR+++ 
Sbjct: 9   FLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGY-ALGSLLAGYLSDRFGRRRVL 67

Query: 64  LSSLAGVIISLVLLSWA--FISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM 121
           L  L    +  +LL++A     ++     +      + P    + +E +  + RG   G+
Sbjct: 68  LLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL 127

Query: 122 SATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFL 177
            +    +  L+       +A+ +G    FLILA + +L  + ++  +     L   
Sbjct: 128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALA 183

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 4/154 (2%)

Query: 15  YYSPTIVQMAGFQSNQLALLPSLVVAGT-NAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 73
           Y  P +  +AGF  + ++L+  L+  G    +G ++G  L D   R+ L  + L   +  
Sbjct: 233 YIRPFLESVAGFSVSAVSLV--LLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALAL 290

Query: 74  LVLLSWAFISVIGLALYITF-FAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLI 132
           L L        + LAL   + FA                     + G ++     +   +
Sbjct: 291 LALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIAL 350

Query: 133 VAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL 166
            A     V D +G  +T  + A + +LA++  +L
Sbjct: 351 GAALGGLVLDALGYAATGWVGAALLLLALLLALL 384

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG0569	485	consensus Permease of the major facilitator superf	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.87
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.86
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.86
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
PRK03545	390	putative arabinose transporter; Provisional	99.84
PRK11663	434	regulatory protein UhpC; Provisional	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.84
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.84
TIGR00891	405	2A0112 putative sialic acid transporter.	99.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.83
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.83
TIGR00895	398	2A0115 benzoate transport.	99.82
PRK10091	382	MFS transport protein AraJ; Provisional	99.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.82
PRK10054	395	putative transporter; Provisional	99.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.81
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.81
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.81
PRK12307	426	putative sialic acid transporter; Provisional	99.8
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.8
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.8
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.79
TIGR00900	365	2A0121 H+ Antiporter protein.	99.79
PRK10504	471	putative transporter; Provisional	99.79
PLN00028	476	nitrate transmembrane transporter; Provisional	99.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.79
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.78
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.78
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.78
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.78
PRK09874	408	drug efflux system protein MdtG; Provisional	99.78
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.77
PRK11043	401	putative transporter; Provisional	99.77
PRK10642	490	proline/glycine betaine transporter; Provisional	99.77
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.77
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.77
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.76
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.76
KOG0254	513	consensus Predicted transporter (major facilitator	99.76
PRK03893	496	putative sialic acid transporter; Provisional	99.76
PRK03699	394	putative transporter; Provisional	99.75
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.75
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.75
PRK10642	490	proline/glycine betaine transporter; Provisional	99.75
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.75
PRK09705	393	cynX putative cyanate transporter; Provisional	99.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.74
TIGR00898	505	2A0119 cation transport protein.	99.74
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.74
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.73
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.73
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.73
PRK15075	434	citrate-proton symporter; Provisional	99.72
KOG2532	466	consensus Permease of the major facilitator superf	99.72
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.72
PRK05122	399	major facilitator superfamily transporter; Provisi	99.72
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.72
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.71
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.71
PRK12382	392	putative transporter; Provisional	99.71
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.7
PRK09952	438	shikimate transporter; Provisional	99.7
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.69
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.68
PRK10489	417	enterobactin exporter EntS; Provisional	99.68
PRK03893	496	putative sialic acid transporter; Provisional	99.68
PRK09705	393	cynX putative cyanate transporter; Provisional	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
PRK10489	417	enterobactin exporter EntS; Provisional	99.66
TIGR00901	356	2A0125 AmpG-related permease.	99.66
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.66
PRK15011	393	sugar efflux transporter B; Provisional	99.66
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.66
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.65
PRK03633	381	putative MFS family transporter protein; Provision	99.65
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.65
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.64
PRK11902	402	ampG muropeptide transporter; Reviewed	99.64
PRK09528	420	lacY galactoside permease; Reviewed	99.64
PRK15075	434	citrate-proton symporter; Provisional	99.64
KOG2615	451	consensus Permease of the major facilitator superf	99.63
PRK11663	434	regulatory protein UhpC; Provisional	99.63
PTZ00207	591	hypothetical protein; Provisional	99.63
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.63
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.62
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.62
PRK10133	438	L-fucose transporter; Provisional	99.62
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.61
PRK12307	426	putative sialic acid transporter; Provisional	99.61
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
PRK09952	438	shikimate transporter; Provisional	99.61
PRK05122	399	major facilitator superfamily transporter; Provisi	99.61
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.61
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.6
TIGR00805	633	oat sodium-independent organic anion transporter.	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PRK11010	491	ampG muropeptide transporter; Validated	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
KOG0254	513	consensus Predicted transporter (major facilitator	99.58
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.57
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.57
PRK03633	381	putative MFS family transporter protein; Provision	99.57
KOG0569	485	consensus Permease of the major facilitator superf	99.57
PRK12382	392	putative transporter; Provisional	99.57
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.56
PRK03699	394	putative transporter; Provisional	99.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.55
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.55
TIGR00898	505	2A0119 cation transport protein.	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.53
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.53
PRK03545	390	putative arabinose transporter; Provisional	99.52
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.52
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.51
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.5
TIGR00891	405	2A0112 putative sialic acid transporter.	99.5
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.5
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.5
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.5
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.49
KOG2533	495	consensus Permease of the major facilitator superf	99.49
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.47
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.47
PRK11010	491	ampG muropeptide transporter; Validated	99.47
PLN00028	476	nitrate transmembrane transporter; Provisional	99.46
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.46
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.44
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.44
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.44
PRK10504	471	putative transporter; Provisional	99.44
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.42
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.42
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.42
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.42
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.41
TIGR00895	398	2A0115 benzoate transport.	99.39
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.38
TIGR00900	365	2A0121 H+ Antiporter protein.	99.36
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.35
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.35
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
PRK10091	382	MFS transport protein AraJ; Provisional	99.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.3
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
PRK11902	402	ampG muropeptide transporter; Reviewed	99.29
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.28
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.28
PF13347	428	MFS_2: MFS/sugar transport protein	99.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.28
PRK09669	444	putative symporter YagG; Provisional	99.27
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.27
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.26
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.26
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.24
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.24
TIGR00901	356	2A0125 AmpG-related permease.	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.22
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.22
PRK10429	473	melibiose:sodium symporter; Provisional	99.21
PRK10429	473	melibiose:sodium symporter; Provisional	99.21
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.19
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.19
PRK09848	448	glucuronide transporter; Provisional	99.18
PRK11043	401	putative transporter; Provisional	99.18
PRK11462	460	putative transporter; Provisional	99.17
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.17
PRK10054	395	putative transporter; Provisional	99.16
PRK10133	438	L-fucose transporter; Provisional	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.16
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.11
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.09
PRK09669	444	putative symporter YagG; Provisional	99.03
PRK11462	460	putative transporter; Provisional	99.02
PF13347	428	MFS_2: MFS/sugar transport protein	99.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
KOG2532	466	consensus Permease of the major facilitator superf	98.99
COG2211	467	MelB Na+/melibiose symporter and related transport	98.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.98
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.95
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.92
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.92
PRK09848	448	glucuronide transporter; Provisional	98.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.88
PF12832	77	MFS_1_like: MFS_1 like family	98.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.85
KOG2533	495	consensus Permease of the major facilitator superf	98.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.83
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.81
COG2211	467	MelB Na+/melibiose symporter and related transport	98.77
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.67
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.6
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.59
KOG3762	618	consensus Predicted transporter [General function	98.53
KOG2563	480	consensus Permease of the major facilitator superf	98.47
COG0477	338	ProP Permeases of the major facilitator superfamil	98.46
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.34
KOG2563	480	consensus Permease of the major facilitator superf	98.31
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.3
PTZ00207	591	hypothetical protein; Provisional	98.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.04
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.96
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.93
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.86
KOG3762	618	consensus Predicted transporter [General function	97.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.78
KOG0637	498	consensus Sucrose transporter and related proteins	97.67
KOG3626	735	consensus Organic anion transporter [Secondary met	97.66
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.57
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.5
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.44
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.37
KOG3626	735	consensus Organic anion transporter [Secondary met	97.35
KOG2615	451	consensus Permease of the major facilitator superf	97.33
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.33
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.31
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.2
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.2
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.13
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.1
TIGR00805	633	oat sodium-independent organic anion transporter.	97.08
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.99
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.87
PRK03612	521	spermidine synthase; Provisional	96.73
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.7
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.46
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.08
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.04
COG3202	509	ATP/ADP translocase [Energy production and convers	94.58
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.33
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.09
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.24
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.63
KOG2325	488	consensus Predicted transporter/transmembrane prot	87.6
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	87.26
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	87.21
KOG3810	433	consensus Micronutrient transporters (folate trans	81.71
KOG0637	498	consensus Sucrose transporter and related proteins	80.01

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.5e-21  Score=148.73  Aligned_cols=183  Identities=31%  Similarity=0.616  Sum_probs=155.6

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      ...++++|.+....|...++++.|++..+..+ .+........+.++++.++.||+|||++++.+..++.+..+.+....
T Consensus       278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  278 SFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999988444 44444555999999999999999999999999998888877765433


Q ss_pred             -----H-------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627           82 -----I-------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGST  149 (204)
Q Consensus        82 -----~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  149 (204)
                           .       .+.........+..|.+|+.+-+.+|++|++.|..+.++....+++..++....++.+.+.+|- ..
T Consensus       357 ~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~  435 (485)
T KOG0569|consen  357 FLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YV  435 (485)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hh
Confidence                 1       1233344555667788899999999999999999999999999999999999999999999986 68


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHhch
Q 041627          150 FLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKER  186 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~  186 (204)
                      |+.+.+.+.+..++.++++||||+|+.+|+.+..+++
T Consensus       436 filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  436 FILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             hHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            8888888888888999999999999999888776665

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.87  E-value=7.5e-21  Score=146.79  Aligned_cols=170  Identities=15%  Similarity=0.145  Sum_probs=144.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ++.++...+.+....|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWG-YVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHH-HHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            455667777888889999999999999988888888777 899999999999999999999998888887777766654 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       +.+.+.+++.+.+.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.++..+.+.++.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence             6667777888888888888888999999999999999999999999999999999999889999999998877777666


Q ss_pred             HHHHHhhccCCCC
Q 041627          161 VVFVILFVPETQG  173 (204)
Q Consensus       161 ~~~~~~~~~e~~~  173 (204)
                      .+...+..||+++
T Consensus       162 ~~~~~~~~~~~~~  174 (399)
T TIGR00893       162 GVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHhhheecCCCC
Confidence            6555555666543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.86  E-value=2.2e-20  Score=145.79  Aligned_cols=170  Identities=12%  Similarity=0.064  Sum_probs=143.4

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      +++++.......+..|.+.+++|+++.+.++..+....+ ..+++++.|+++||+|||+++..+.++..++.....+.. 
T Consensus        17 ~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~   95 (412)
T TIGR02332        17 FIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAA-YVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG   95 (412)
T ss_pred             HHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344555566777788888899999999999988888877 899999999999999999999999888888888777654 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------hhCcchhhhHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD------LVGTGSTFLILA  154 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~  154 (204)
                       ..+...+++.+.+.+...+....++.|++|+++|+++.++......+|..+++.+.+.+.+      ..|||+.|++.+
T Consensus        96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~  175 (412)
T TIGR02332        96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEG  175 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Confidence             6677788888888888888888899999999999999999999999999999999887764      368999999887


Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 041627          155 GIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       155 ~~~~i~~~~~~~~~~e~~~  173 (204)
                      ...++..++.++++||+++
T Consensus       176 ~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       176 FPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHhhccCCCcc
Confidence            7777666666677788764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3.2e-20  Score=140.71  Aligned_cols=166  Identities=20%  Similarity=0.152  Sum_probs=154.6

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .|...+.-+.....+|.+.+|+|.+..+.++.++.+..+ ..+++++...+.||+.||++++....+++++.++..+.+ 
T Consensus        22 ~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~-~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~  100 (394)
T COG2814          22 AFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALG-VALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS  100 (394)
T ss_pred             HHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            355566667888899999999999999999999999999 799999999999999999999999999999999988887 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       ..+++.|++.+...+.+.++...+..++.|+++|+++.++......++..++.++..++-+.+|||.+|+..+.+.++.
T Consensus       101 f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~  180 (394)
T COG2814         101 FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLA  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             7788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 041627          161 VVFVILFVP  169 (204)
Q Consensus       161 ~~~~~~~~~  169 (204)
                      .+..+..+|
T Consensus       181 ~~~~~~~lP  189 (394)
T COG2814         181 LLLLWKLLP  189 (394)
T ss_pred             HHHHHHhCC
Confidence            888888888

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=4.6e-20  Score=141.84  Aligned_cols=167  Identities=14%  Similarity=0.065  Sum_probs=133.6

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH--HHH
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW--AFI   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~   82 (204)
                      .+.+.+..+.+.+|.+.+++|.++.+.++..+....+ ..+++++.|+++||+|||+++.........+......  ...
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g-~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAA-FLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3456678889999999999999999999988887777 8999999999999999998766554444333221221  115


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVV  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  162 (204)
                      .+...+++.+.+.+. ........+|.+|+++|+++.++......+|..+++.+.+.+.+..|||..|++.+.+.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            677778887777654 4445566699999999999999999999999999999999999999999999988888877777


Q ss_pred             HHHhhccCCCC
Q 041627          163 FVILFVPETQG  173 (204)
Q Consensus       163 ~~~~~~~e~~~  173 (204)
                      +.++++||+++
T Consensus       160 ~~~~~lp~~p~  170 (368)
T TIGR00903       160 LVLAALPALPF  170 (368)
T ss_pred             HHHHHcCCCCC
Confidence            77778888754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.84  E-value=9.5e-20  Score=141.33  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=135.0

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLA   88 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   88 (204)
                      +.....+|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+++..+..+..++...+....  +.+.+.+
T Consensus        26 ~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  104 (390)
T PRK03545         26 FVPVGLLSDIAQSFHMQTAQVGLMLTIYAWV-VALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR  104 (390)
T ss_pred             HHHHcchHHHHhHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3445567899999999999999888888777 788999999999999999999999888888877776654  5666677


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhc
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      +..+...+...+....++.|.+|+++|+++.|+......++..++|.+.+.+.+..+|++.|++.+.+.++..+......
T Consensus       105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~  184 (390)
T PRK03545        105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLL  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77777776667777889999999999999999999999999999999999988889999999998887776655555556


Q ss_pred             cCCC
Q 041627          169 PETQ  172 (204)
Q Consensus       169 ~e~~  172 (204)
                      ||.+
T Consensus       185 ~~~~  188 (390)
T PRK03545        185 PLLP  188 (390)
T ss_pred             CCCC
Confidence            6653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.84  E-value=5.7e-20  Score=144.46  Aligned_cols=164  Identities=16%  Similarity=0.113  Sum_probs=135.1

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      ...+.+..+.|.+.+++|.+..+.++..+..... ..+++++.|+++||+|||+.+.++.++..++.+......  +.+.
T Consensus        37 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~  115 (434)
T PRK11663         37 FTRKSFNAAMPEMLADLGLSRSDIGLLATLFYIT-YGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFA  115 (434)
T ss_pred             HhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3334667889999999999999988888887777 899999999999999999999999888888877766654  4455


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      +.+++.+...+...+....++.|++|+++|+++.++.+....+|+.+++.+.+.+.+.++|++.|++.+++.++..+...
T Consensus       116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666667777889999999999999999999999999999999999999999999999887776665544445


Q ss_pred             hhccCCC
Q 041627          166 LFVPETQ  172 (204)
Q Consensus       166 ~~~~e~~  172 (204)
                      +.+||++
T Consensus       196 ~~~~~~p  202 (434)
T PRK11663        196 WRLRDKP  202 (434)
T ss_pred             HHcCCCH
Confidence            5566653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.84  E-value=2.5e-20  Score=143.33  Aligned_cols=169  Identities=13%  Similarity=0.107  Sum_probs=140.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ++..+.....+....|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++.+...... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIA-YGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHH-HHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            455666677888889999999999999988888888777 899999999999999999999999888888877776655 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHH-HHHHHHHhhCcchhhhHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQ-NFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                       +.+.+.+++.+.+.+...+....++.|++|+++|+++.++......+|..+++. +.+.+.+..+|++.+++.+.+.++
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence             566667777788888888888899999999999999999999999999999994 556666777899988887777766


Q ss_pred             HHHHHHhhccCCC
Q 041627          160 AVVFVILFVPETQ  172 (204)
Q Consensus       160 ~~~~~~~~~~e~~  172 (204)
                      ..+...++.||++
T Consensus       163 ~~~~~~~~~~~~~  175 (379)
T TIGR00881       163 VSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHheeeCCCc
Confidence            6566666666654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.84  E-value=2.5e-19  Score=139.19  Aligned_cols=161  Identities=12%  Similarity=0.049  Sum_probs=136.0

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLA   88 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   88 (204)
                      +.....+|.+.+++|.++.+.+...+..... ..++.++.|+++||+|||+.+..+..+..++.+......  +.+...+
T Consensus        37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFV-AMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            3445578889999999999988888888777 789999999999999999999999998888777665544  6677778


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhc
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      ++.+.+.+...+....++.|++|+++|+++.++.....+++..++|.+.+.+.+.++|++.|++.+.+.++..+......
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            88888888888888899999999999999999999999999999999999999999999999887766665544444456


Q ss_pred             cCCC
Q 041627          169 PETQ  172 (204)
Q Consensus       169 ~e~~  172 (204)
                      ||++
T Consensus       196 p~~~  199 (394)
T PRK10213        196 PSLP  199 (394)
T ss_pred             CCCC
Confidence            7754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.83  E-value=2.6e-19  Score=139.07  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=135.8

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +......+......|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+++..+..+..++.+......  
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  100 (405)
T TIGR00891        22 LLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALIS-RWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY  100 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34455666778888999999999999988888888777 899999999999999999999998888887777766554  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhhHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG--TGSTFLILAGIAVL  159 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i  159 (204)
                      ..+...+++.+.+.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+  |++.+++.....++
T Consensus       101 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF  180 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            5566677888888788888888999999999999999999999999999999999988887766  88888765444333


Q ss_pred             HHHHHHhhccCCC
Q 041627          160 AVVFVILFVPETQ  172 (204)
Q Consensus       160 ~~~~~~~~~~e~~  172 (204)
                      . ++.....||++
T Consensus       181 ~-~~~~~~~~~~~  192 (405)
T TIGR00891       181 A-LWLRKNIPEAE  192 (405)
T ss_pred             H-HHHHHhCCCCh
Confidence            3 34445567764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.83  E-value=2.4e-19  Score=138.53  Aligned_cols=166  Identities=16%  Similarity=0.137  Sum_probs=138.5

Q ss_pred             hhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH
Q 041627            7 FTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV   84 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   84 (204)
                      ..+.....+..|.+.+++|.++.+.++..+....+ ..++.++.|+++||+|||+.+..+..+..++.+......  ...
T Consensus        18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (385)
T TIGR00710        18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLG-FAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL   96 (385)
T ss_pred             HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34556667778899999999999988888888777 899999999999999999999998888887777666554  555


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      ...+++.+.+.+...+....++.|.+|+++|+++.++......++..+++.+.+.+.+..+|+..+++.+....+..+..
T Consensus        97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
T TIGR00710        97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI  176 (385)
T ss_pred             HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777788889999999999999999999999999999999999999888999999988877777666666


Q ss_pred             HhhccCCCC
Q 041627          165 ILFVPETQG  173 (204)
Q Consensus       165 ~~~~~e~~~  173 (204)
                      .+..||+++
T Consensus       177 ~~~~~~~~~  185 (385)
T TIGR00710       177 FFILPETLP  185 (385)
T ss_pred             HHhCCCCCC
Confidence            666777644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.83  E-value=1.6e-18  Score=137.86  Aligned_cols=180  Identities=34%  Similarity=0.608  Sum_probs=131.5

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---   81 (204)
                      ++..+++...++.|.+.++.|.+....... ........+++.++.++++||+|||+.++.+..+..++.+.+....   
T Consensus       282 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~  360 (479)
T PRK10077        282 QQFVGINVVLYYAPEIFKTLGASTDIALLQ-TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  360 (479)
T ss_pred             HHHhChhHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            345556667788899999999887664443 3334444789999999999999999999988888777766654332   


Q ss_pred             ---HHHH-HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH------HhhCcchhhh
Q 041627           82 ---ISVI-GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA------DLVGTGSTFL  151 (204)
Q Consensus        82 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~  151 (204)
                         .... ..............+..+.+++|.+|+++|+++.|+.....++++.+++.+.+.+.      +..+++..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  440 (479)
T PRK10077        361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW  440 (479)
T ss_pred             cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence               1111 12222222333345677899999999999999999999999999999887776544      4677877888


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHhc
Q 041627          152 ILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKE  185 (204)
Q Consensus       152 ~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~  185 (204)
                      +.++..+++.+..+++.||+++++.+|.++..++
T Consensus       441 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        441 IYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            8887777777777777899998887776665433

>TIGR00895 2A0115 benzoate transport

Probab=99.82  E-value=4.9e-19  Score=137.07  Aligned_cols=164  Identities=21%  Similarity=0.204  Sum_probs=135.7

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .......++.|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........  ..+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (398)
T TIGR00895        31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIG-MAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLL  109 (398)
T ss_pred             HHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            3445667788999999999999888887777766 799999999999999999999988887777766665544  4556


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      +.+.+.+.+.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..+++.+.+..+..++..
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            66777777777778888999999999999999999999999999999999999999999999988887666666656666


Q ss_pred             hhccCCC
Q 041627          166 LFVPETQ  172 (204)
Q Consensus       166 ~~~~e~~  172 (204)
                      .+.||++
T Consensus       190 ~~~~~~~  196 (398)
T TIGR00895       190 RFLPESI  196 (398)
T ss_pred             HhCCCCC
Confidence            6677764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.82  E-value=3.5e-19  Score=137.88  Aligned_cols=167  Identities=14%  Similarity=0.058  Sum_probs=139.5

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HH
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--IS   83 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~   83 (204)
                      ...+.+.....+|.+.+++|.+..+.++..+....+ ..+++++.|+++||+|||+++..+..+..++.+......  +.
T Consensus        15 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~   93 (382)
T PRK10091         15 LGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALG-VVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLM   93 (382)
T ss_pred             HHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHH-HHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            334446777889999999999999988888888888 899999999999999999999999988888877776655  66


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                      +.+.+.+.+.+.+...+....++.|++|+++|+++.+.......++..+++.+.+.+.+..+|++.|++.+.+..+..+.
T Consensus        94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091         94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            67777777777766666777788999999999999999999899999999999998888899999999888777666555


Q ss_pred             HHhhccCCCC
Q 041627          164 VILFVPETQG  173 (204)
Q Consensus       164 ~~~~~~e~~~  173 (204)
                      ..+++||.++
T Consensus       174 ~~~~lp~~~~  183 (382)
T PRK10091        174 IYFWVPDIRD  183 (382)
T ss_pred             HHHhCCCCCc
Confidence            5666787643

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.82  E-value=3.1e-20  Score=141.59  Aligned_cols=168  Identities=21%  Similarity=0.257  Sum_probs=138.1

Q ss_pred             hhhhhhhhhhHHhhhH-HHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSP-TIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+....+........| .+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++.....+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~   83 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLG-SALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS   83 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHH-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence            3555666677788888 77788999999989888888777 899999999999999999999999888888855544422


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                        +.+...+++.+.+.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.+++.+.+.++
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~  163 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI  163 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence              566777788888888888899999999999999999999999999999999999999888888999999998888887


Q ss_pred             HHHHHHhhccCC
Q 041627          160 AVVFVILFVPET  171 (204)
Q Consensus       160 ~~~~~~~~~~e~  171 (204)
                      ..++...+.+++
T Consensus       164 ~~il~~~~~~~~  175 (352)
T PF07690_consen  164 AAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHCCC---
T ss_pred             hhhhHhhhhhhc
Confidence            766444445544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.82  E-value=2.8e-19  Score=138.80  Aligned_cols=170  Identities=18%  Similarity=0.151  Sum_probs=139.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .+++..+.+.....+|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........ 
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAG-MAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            445666777778899999999999999888887777766 789999999999999999999998888877777665544 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       ......+++.+.+.+...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|++.+++.+.+..+.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence             4455566676766666677788999999999999999999999999999999999888878889999888888777777


Q ss_pred             HHHHHhhccCCCC
Q 041627          161 VVFVILFVPETQG  173 (204)
Q Consensus       161 ~~~~~~~~~e~~~  173 (204)
                      .+...+..||+++
T Consensus       171 ~~~~~~~~~~~~~  183 (392)
T PRK10473        171 LLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHcCCCCC
Confidence            6666666777643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.82  E-value=3.5e-19  Score=139.14  Aligned_cols=163  Identities=13%  Similarity=0.060  Sum_probs=134.0

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      .....+-+|.+.+++|.+..+.++..+.+..+ ..+++++.|+++||+|||+++..+..+..++........  ..+.+.
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  110 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAG-GMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA  110 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34455556678888999999988888888877 799999999999999999999999888888777766554  566777


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      +++.+.+.+...+..+.++.|.+|+++|++++++......++..++|.+.+.+.+..+|++.|++.++..++..+...+.
T Consensus       111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  190 (413)
T PRK15403        111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLA  190 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            88887776555566678889999999999999999999999999999999988888899999998888777766555566


Q ss_pred             ccCCCC
Q 041627          168 VPETQG  173 (204)
Q Consensus       168 ~~e~~~  173 (204)
                      +||+++
T Consensus       191 lp~~~~  196 (413)
T PRK15403        191 MPETVK  196 (413)
T ss_pred             CCCCcc
Confidence            788743

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=1.2e-18  Score=135.49  Aligned_cols=168  Identities=10%  Similarity=0.059  Sum_probs=130.1

Q ss_pred             hhhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .++...+.+...+++|.+.+ ++|+++.+.++..+..... ..+++++.|+++||+|||+++..+.....++.....+.+
T Consensus        16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~   94 (395)
T PRK10054         16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTI-GVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence            45566777888888888775 5899999999888888777 789999999999999999999888887777666665544


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                        +.....+.+.+.......+....+..|..|+++|+++.++.+...++|..++|.+.+.+.+ .+|+..|+..+...++
T Consensus        95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i  173 (395)
T PRK10054         95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF  173 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence              3333334444444444456677888999999999999999999999999999999998764 7899999887777666


Q ss_pred             HHHHHHhhccCCC
Q 041627          160 AVVFVILFVPETQ  172 (204)
Q Consensus       160 ~~~~~~~~~~e~~  172 (204)
                      ..+...+++||++
T Consensus       174 ~~i~~~~~~~~~~  186 (395)
T PRK10054        174 PLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHhccc
Confidence            6555555566553

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.81  E-value=3.1e-19  Score=142.41  Aligned_cols=168  Identities=16%  Similarity=0.078  Sum_probs=139.7

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +........+..-+|.+.+++|.+..+.++..+.+... ...+.++.|+++||+|||+.+..+..+..++.+.+....  
T Consensus        16 ~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~-~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~   94 (495)
T PRK14995         16 IPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLV-MAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA   94 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            44444555677789999999999998889988888777 788999999999999999999999999988888777665  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhccccc-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                      +.+++.+.+.+.+.+...+.....+.+.+ |+++|+++.|+......+|..++|.+.+.+.+..+||+.|++...+.++.
T Consensus        95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~  174 (495)
T PRK14995         95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVV  174 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence            66777788888877777666666665655 78999999999999999999999999999999999999999887777776


Q ss_pred             HHHHHhhccCCC
Q 041627          161 VVFVILFVPETQ  172 (204)
Q Consensus       161 ~~~~~~~~~e~~  172 (204)
                      .++..+.+||.+
T Consensus       175 ~~l~~~~l~~~~  186 (495)
T PRK14995        175 MGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHhCCCCC
Confidence            666666677754

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.81  E-value=6.7e-19  Score=135.84  Aligned_cols=163  Identities=20%  Similarity=0.184  Sum_probs=137.1

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHH
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIG   86 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~   86 (204)
                      +.....+.+|.+.+++|.++.+.+...+..... ..++.++.|+++||+|||+.+..+..+..++........  .....
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILG-FAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            446677899999999999999988888888777 799999999999999999999999888888877766554  45566


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHh
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL  166 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  166 (204)
                      .+++.+.+.+...+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+|++.+++.+.+..+..+...+
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            66777777776677778899999999999999999999999999999999999999899999988877777776666566


Q ss_pred             hccCCC
Q 041627          167 FVPETQ  172 (204)
Q Consensus       167 ~~~e~~  172 (204)
                      ..||++
T Consensus       165 ~~~~~~  170 (377)
T PRK11102        165 FIPETL  170 (377)
T ss_pred             hCCccC
Confidence            677753

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.81  E-value=2.1e-19  Score=142.98  Aligned_cols=168  Identities=18%  Similarity=0.165  Sum_probs=142.3

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +.............|.+.+++|.+..+.++..+..... ..++.++.|+++||+|||+.+..+..+..++.+......  
T Consensus        12 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   90 (485)
T TIGR00711        12 FMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLA-NAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL   90 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHH-HHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCH
Confidence            34445556777889999999999999888888887777 899999999999999999999999888888877766554  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      ..+...+++.+.+.+...+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+|++.|++...+.++..
T Consensus        91 ~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~  170 (485)
T TIGR00711        91 ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVV  170 (485)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHH
Confidence            56677788888888888888889999999999999999999999999999999999999999999999998877776666


Q ss_pred             HHHHhhccCCC
Q 041627          162 VFVILFVPETQ  172 (204)
Q Consensus       162 ~~~~~~~~e~~  172 (204)
                      +...+..||++
T Consensus       171 ~~~~~~~~~~~  181 (485)
T TIGR00711       171 VVAFFILPRDK  181 (485)
T ss_pred             HHHHHHcCCcc
Confidence            66666667653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.81  E-value=5.1e-19  Score=137.84  Aligned_cols=167  Identities=18%  Similarity=0.142  Sum_probs=136.4

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      .+....+......|.+.+++|.++.+.++..+....+ ..+++++.|+++||+|||+++..+..+..++.+......  .
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  104 (406)
T PRK11551         26 LEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILG-LLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP  104 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence            3444556677888999999999999988888888777 899999999999999999999998877777666555444  5


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVV  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  162 (204)
                      .+.+.+++.+.+.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+.+.++..+
T Consensus       105 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        105 SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            56667777777777777788899999999999999999999999999999999888887888899888887766665555


Q ss_pred             HHHhhccCCC
Q 041627          163 FVILFVPETQ  172 (204)
Q Consensus       163 ~~~~~~~e~~  172 (204)
                      ....++||++
T Consensus       185 ~~~~~l~~~~  194 (406)
T PRK11551        185 LLMRWLPESR  194 (406)
T ss_pred             HHHHhCCCCh
Confidence            5556678764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.80  E-value=1.1e-18  Score=136.82  Aligned_cols=149  Identities=19%  Similarity=0.150  Sum_probs=127.1

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      ......+...+..|.+.+++|.++.+.+...+....+ ..+++++.|+++||+|||+.+..+..+..++........  .
T Consensus        29 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~-~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~  107 (426)
T PRK12307         29 FDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIG-RPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVI  107 (426)
T ss_pred             HHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3445556677788888899999999988877777766 899999999999999999999999998888887766654  5


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                      .+.+.+++.+.+.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.+++..
T Consensus       108 ~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        108 MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            677778888888888888888999999999999999999999999999999998888888889999887643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.80  E-value=3.6e-18  Score=133.18  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=134.3

Q ss_pred             hhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH
Q 041627            7 FTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV   84 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   84 (204)
                      ..+...+.+.+|.+.+++|.++.+.++..+....+ ..++.++.|+++||+|||+.+..+.....++........  +.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l  104 (406)
T PRK15402         26 YIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAG-GMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQF  104 (406)
T ss_pred             HhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34455666778888899999999988888877777 899999999999999999999988888777777665554  455


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      ...+++.+...+...+....++.|.+|+++|.+..++......++..++|.+.+.+.+..+|++.+++.+++.++..+..
T Consensus       105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            56667777666666677788899999999999999998888888889999999988888899999988887777666655


Q ss_pred             HhhccCCCC
Q 041627          165 ILFVPETQG  173 (204)
Q Consensus       165 ~~~~~e~~~  173 (204)
                      .+..||+++
T Consensus       185 ~~~~~~~~~  193 (406)
T PRK15402        185 WRAMPETAG  193 (406)
T ss_pred             HHhCCCCCc
Confidence            566777643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.80  E-value=2.7e-18  Score=137.29  Aligned_cols=174  Identities=22%  Similarity=0.312  Sum_probs=121.1

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhh-----------hHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHH
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLAL-----------LPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL   74 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~   74 (204)
                      +...+|+...|.|.+.++.|+++.+.+.           ..........+++.++.++++||+|||+.++.+..+..++.
T Consensus       300 ~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~  379 (502)
T TIGR00887       300 LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLF  379 (502)
T ss_pred             HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Confidence            3445667788899999998887543111           11223333356788999999999999999888777666655


Q ss_pred             HHHHHHH-----HHH-HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh----
Q 041627           75 VLLSWAF-----ISV-IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV----  144 (204)
Q Consensus        75 ~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----  144 (204)
                      .+.....     ... .........+..+..+..+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+..    
T Consensus       380 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (502)
T TIGR00887       380 FVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK  459 (502)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc
Confidence            5444321     111 111122223345566778888999999999999999999999999999999999887743    


Q ss_pred             ------CcchhhhHHHHHHHHHHHHHHhhccCCCCcCHHHHH
Q 041627          145 ------GTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVE  180 (204)
Q Consensus       145 ------~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~  180 (204)
                            ++...+++++++.+++.+. .+++|||++++.||.+
T Consensus       460 ~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~  500 (502)
T TIGR00887       460 GYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELS  500 (502)
T ss_pred             cccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhh
Confidence                  3345677777776666544 4677999988876653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.79  E-value=7.7e-18  Score=138.48  Aligned_cols=161  Identities=17%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLA   88 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   88 (204)
                      ..+...+|.+.+++|.+..+.+++.+....+ .+++++++|+++||+|||+.++++.++..++.++..+..  ..+++.+
T Consensus       184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG-~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R  262 (742)
T TIGR01299       184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLG-MMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCR  262 (742)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4566778888889999999888888887777 899999999999999999999998888887777766654  6677788


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------------CcchhhhHHHH
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-------------GTGSTFLILAG  155 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~~  155 (204)
                      ++.+++.++..+....+++|.+|++.|++.+++...+..+|.++++.+...+...+             +||+.+++.++
T Consensus       263 ~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~l  342 (742)
T TIGR01299       263 LLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAF  342 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHH
Confidence            88888888888999999999999999999999999999999999888776665443             46666665554


Q ss_pred             HHHHHHHHHHhhccCCCC
Q 041627          156 IAVLAVVFVILFVPETQG  173 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~~~  173 (204)
                      .. +..++..+++||+++
T Consensus       343 p~-ll~ll~~~~lPESPr  359 (742)
T TIGR01299       343 PC-VFAIGALTFMPESPR  359 (742)
T ss_pred             HH-HHHHHHHHHcCCCHH
Confidence            44 444555677899843

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.79  E-value=4e-18  Score=130.53  Aligned_cols=159  Identities=13%  Similarity=0.041  Sum_probs=130.4

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +....+........|.+..+.+.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   87 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLP-YVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL   87 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44455666777888999999999999988888888777 899999999999999999999988877666655544332  


Q ss_pred             -----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           82 -----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                           +.+...+.+.+.+.+...+...+++.|++|+++|+++.++......+|..+++.+.+.+.+..+|++.+++.+..
T Consensus        88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  167 (365)
T TIGR00900        88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVG  167 (365)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                 455666777777777777888899999999999999999999999999999999999999999999988877665


Q ss_pred             HHHHHHH
Q 041627          157 AVLAVVF  163 (204)
Q Consensus       157 ~~i~~~~  163 (204)
                      .++..+.
T Consensus       168 ~~~~~~~  174 (365)
T TIGR00900       168 FAISALL  174 (365)
T ss_pred             HHHHHHH
Confidence            5555433

>PRK10504 putative transporter; Provisional

Probab=99.79  E-value=4e-18  Score=135.32  Aligned_cols=168  Identities=12%  Similarity=0.063  Sum_probs=138.0

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .+++....+.+.++.|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+++..+..+..++.+...... 
T Consensus        19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   97 (471)
T PRK10504         19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLT-VAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT   97 (471)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            345556667888899999999999999888877776666 789999999999999999999888777777666555443 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       ..+...+.+.+.+.+...+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+|++.|++......+.
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~  177 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG  177 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence             5566677888888877788888999999999999999999999999999999999999999999999998877666666


Q ss_pred             HHHHHhhccCC
Q 041627          161 VVFVILFVPET  171 (204)
Q Consensus       161 ~~~~~~~~~e~  171 (204)
                      .+......|+.
T Consensus       178 ~~~~~~~~~~~  188 (471)
T PRK10504        178 AIATLMLMPNY  188 (471)
T ss_pred             HHHHHHhCCCc
Confidence            55555555554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.79  E-value=4.5e-18  Score=135.12  Aligned_cols=165  Identities=12%  Similarity=0.105  Sum_probs=123.4

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +......+...++.|.+.+++|++..+.++..+....+ ..+++++.|+++||+|||+++..+.++..++.+......  
T Consensus        46 ~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~  124 (476)
T PLN00028         46 FTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSG-SIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH
Confidence            44455566778888999999999999988776666555 789999999999999999999888887777776665554  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH---------hhCcchhhhH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD---------LVGTGSTFLI  152 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~  152 (204)
                      ..+.+.+++.+.+.+... ....+++|++|+++|+++.|+.+...++|+.+++.+.+.+..         ..|||+.|++
T Consensus       125 ~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i  203 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFV  203 (476)
T ss_pred             HHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence            444455666666555433 344578999999999999999988888888777766654432         1479999998


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 041627          153 LAGIAVLAVVFVILFVPE  170 (204)
Q Consensus       153 ~~~~~~i~~~~~~~~~~e  170 (204)
                      .+++.++..+...++.++
T Consensus       204 ~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        204 PGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHHHHHHHHHHHcCc
Confidence            888777665555544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.8e-18  Score=130.48  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=144.3

Q ss_pred             hHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHH
Q 041627           12 TVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLAL   89 (204)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   89 (204)
                      .+..-.|.+.++.++|.++.+.+.+..... ..++.++.|.++||.+.|..+..++++.++..+.+.++.  ..+.++..
T Consensus        47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~-YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~  125 (448)
T COG2271          47 NFNLAMPALIEDGGLSKTQLGILGSAFSIT-YGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWV  125 (448)
T ss_pred             hHhhccHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            355667899999999999999999999888 999999999999999999999999999999999998876  55666677


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHH--HHHHHhhCcchhhhHHHHHHHHHHHHHHhh
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF--LTVADLVGTGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      +.+.+.+.-.|.+...++.++|+++||+..++.+...++|+.+.|.+.  +.+..+.+|+..|++.+++.++..++.++.
T Consensus       126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            788888888899999999999999999999999999999999999998  888888899999999999988888888887


Q ss_pred             ccCCCC
Q 041627          168 VPETQG  173 (204)
Q Consensus       168 ~~e~~~  173 (204)
                      .+++++
T Consensus       206 ~rd~Pq  211 (448)
T COG2271         206 LRDRPQ  211 (448)
T ss_pred             hCCCcc
Confidence            777654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.78  E-value=1.1e-17  Score=128.46  Aligned_cols=168  Identities=20%  Similarity=0.199  Sum_probs=126.5

Q ss_pred             hhhhhhhhhhHHhhhHH-HHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPT-IVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      ++..+...+...++.|. +.+++|.++.+.++..+....+ ..+++++.|+++||+|||+.+..+..+..++.+......
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~   88 (366)
T TIGR00886        10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLA-GAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV   88 (366)
T ss_pred             HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            45566677888999995 7788999999988888888777 899999999999999999999999888888877765543


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----------hCcch
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL----------VGTGS  148 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~  148 (204)
                         ..+...+++.+...+ ..+....+++|++|+++|+++.++.....++|..+++.+.+.+...          .+|++
T Consensus        89 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~  167 (366)
T TIGR00886        89 QSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW  167 (366)
T ss_pred             hhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence               445556666666543 4455678899999999999999999988888888777777665542          37888


Q ss_pred             hhhH-HHHHHHHHHHHHHhhccCCC
Q 041627          149 TFLI-LAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       149 ~~~~-~~~~~~i~~~~~~~~~~e~~  172 (204)
                      .++. .+.+..+..++.....+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       168 AFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCC
Confidence            8843 34444444444444455543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.78  E-value=4.7e-20  Score=140.21  Aligned_cols=168  Identities=14%  Similarity=0.108  Sum_probs=147.1

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HH
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--IS   83 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~   83 (204)
                      +.+.-|.+-.-.+...+.+|.+++..+++.+..... ..+.+++.|+++||++||+++.++..++.++.+...++.  +.
T Consensus        45 ny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~-~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq  123 (493)
T KOG1330|consen   45 NYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVV-FMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQ  123 (493)
T ss_pred             HHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHH-HHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHH
Confidence            444445566666777777999999988888888777 899999999999999999999999999999999888776  78


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAVLAVV  162 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~  162 (204)
                      +.+.+.+.+.+...+.++.+++++|.+|.++|++.+++.+....+|+.+|-.....+.+..+ ||+.|+..+++.++..+
T Consensus       124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~  203 (493)
T KOG1330|consen  124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGL  203 (493)
T ss_pred             HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999988888877777766 99999999999999888


Q ss_pred             HHHhhccCCCCc
Q 041627          163 FVILFVPETQGL  174 (204)
Q Consensus       163 ~~~~~~~e~~~~  174 (204)
                      +..++.+|.+++
T Consensus       204 L~~~f~~eP~rg  215 (493)
T KOG1330|consen  204 LVFLFVREPERG  215 (493)
T ss_pred             HHHhhccCcccc
Confidence            888888887544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.78  E-value=2.2e-18  Score=132.46  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=130.0

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      .+....+.|.+.+++|.++.+.++..+....+ ..+++++.|+++||+|||+++..+..+..++........  +.+...
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIG-LAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT   97 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999988888887 899999999999999999999999888888887776655  455566


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      +.+.+.+.+...+.......|++| ++|+++.++......+|..+++++.+.+.+..+|++.+++.+++.++..+...++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666555666677788887 5799999999999888888878777777778899999998888777766665555


Q ss_pred             ccCC
Q 041627          168 VPET  171 (204)
Q Consensus       168 ~~e~  171 (204)
                      .+|+
T Consensus       177 ~~~~  180 (377)
T TIGR00890       177 IGYP  180 (377)
T ss_pred             eecC
Confidence            5543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.78  E-value=1.1e-17  Score=129.92  Aligned_cols=165  Identities=12%  Similarity=0.094  Sum_probs=130.9

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .......+..|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+.....++.+......  ..+.
T Consensus        22 ~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  100 (394)
T PRK11652         22 MAQTIYVPAIADMARDLNVREGAVQAVMAAYLLT-YGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI  100 (394)
T ss_pred             HHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3344555678889999999999988888887777 899999999999999999999988888777776665544  4555


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ..+++.+.+.+...+....+..|.+++++|+++.+.......++..++|.+.+.+.+..+|++.+++.+....+..+...
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA  180 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            66666666655555666677889999999999999999888889999999999888888999999887776665555555


Q ss_pred             hhccCCCC
Q 041627          166 LFVPETQG  173 (204)
Q Consensus       166 ~~~~e~~~  173 (204)
                      ++.||+++
T Consensus       181 ~~~~~~~~  188 (394)
T PRK11652        181 RWMPETRP  188 (394)
T ss_pred             HhCCccCc
Confidence            66787643

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.78  E-value=2.6e-17  Score=128.24  Aligned_cols=166  Identities=22%  Similarity=0.214  Sum_probs=129.1

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhh-----hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQL-----ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS   78 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   78 (204)
                      ++...+.+...+++|.+.+++|.+..+.     +...+..... ..+++++.|+++||+|||+.+..+.....++.....
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  102 (408)
T PRK09874         24 FLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLF-SAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG  102 (408)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence            4455566778889999999999886542     4455555555 789999999999999999999988887777766655


Q ss_pred             HHH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           79 WAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                      ...  +.+.+.+++.+... +..+....++.|..|+++|+++.++......++..+++.+.+.+.+..+|+..+++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  181 (408)
T PRK09874        103 LAQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV  181 (408)
T ss_pred             HHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            543  45555566666543 345666678889999999999999999999999999999999998889999999888877


Q ss_pred             HHHHHHHHHhhccCC
Q 041627          157 AVLAVVFVILFVPET  171 (204)
Q Consensus       157 ~~i~~~~~~~~~~e~  171 (204)
                      .++..+...++.||+
T Consensus       182 ~~~~~~~~~~~~~~~  196 (408)
T PRK09874        182 LFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHhccC
Confidence            776666666666665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=2.1e-17  Score=128.73  Aligned_cols=166  Identities=14%  Similarity=0.030  Sum_probs=133.6

Q ss_pred             hhhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            4 FQQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      +....+.+...+++|.++ ++.|.+..+.+...+..... ..+..++.|+++||+|||+.+..+..+..++.+.+.... 
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~-~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~   98 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFI-QQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE   98 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            455667777788888765 56899999988888887777 678899999999999999999999888888877776554 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       +.+...+.+.+...+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+. ..+|++.|++.+...++.
T Consensus        99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~  177 (400)
T PRK11646         99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence             455566666666665566677788999999999999999999999999999999999888 779999988877766665


Q ss_pred             HHHHHhhccCC
Q 041627          161 VVFVILFVPET  171 (204)
Q Consensus       161 ~~~~~~~~~e~  171 (204)
                      .+...+..||.
T Consensus       178 ~i~~~~~~~~~  188 (400)
T PRK11646        178 AAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHhCCcc
Confidence            55545556664

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.77  E-value=5.6e-18  Score=134.68  Aligned_cols=157  Identities=17%  Similarity=0.117  Sum_probs=123.0

Q ss_pred             HhhhHHHHHHc--------CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-----
Q 041627           14 MYYSPTIVQMA--------GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-----   80 (204)
Q Consensus        14 ~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----   80 (204)
                      ....|.+.+++        +.++.+.++..+....+ ..+++++.|+++||+|||++++.+..+..++.+.....     
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig-~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~  110 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIG-CIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT  110 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            33445555555        77888888888888777 89999999999999999999999988887776655432     


Q ss_pred             -------H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH--------Hh
Q 041627           81 -------F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA--------DL  143 (204)
Q Consensus        81 -------~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~  143 (204)
                             .  ..+++.+++.+.+.++..+....+++|++|+++|+++.++......+|..+++.+...+.        +.
T Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence                   1  345678889999999999999999999999999999999999888888888776654433        34


Q ss_pred             hCcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          144 VGTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       144 ~~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      .+||+.|++.+...++.. +..+++||++
T Consensus       191 ~gWr~~f~~~~~~~~~~~-~~~~~l~~s~  218 (479)
T PRK10077        191 DGWRYMFASEAIPALLFL-MLLYFVPETP  218 (479)
T ss_pred             CChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence            689999987766665554 4456688875

>PRK11043 putative transporter; Provisional

Probab=99.77  E-value=2.7e-17  Score=128.08  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=126.0

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .+.+.+.+..|.+.+++|.++.+.++..+..... ..+++++.|+++||+|||+.+..+..+..++........  +.+.
T Consensus        20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (401)
T PRK11043         20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAG-FALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL   98 (401)
T ss_pred             HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3444555566667888999999989888888777 799999999999999999999988887777766665544  4555


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ..+++.+.+.+...+....++.|.+|+++|++..+.......++..++|.+.+.+.+..+|+..+++.+.+.++..+...
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043         99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            55666666555555556678899999999999999888888889999999999999999999988887777666544433


Q ss_pred             hhccCC
Q 041627          166 LFVPET  171 (204)
Q Consensus       166 ~~~~e~  171 (204)
                       +.+|+
T Consensus       179 -~~~~~  183 (401)
T PRK11043        179 -RLKPS  183 (401)
T ss_pred             -HcCCC
Confidence             34443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.77  E-value=2.6e-17  Score=131.34  Aligned_cols=168  Identities=13%  Similarity=0.078  Sum_probs=123.1

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchh-hhhh-----HHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQ-LALL-----PSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~-----~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~   77 (204)
                      +.....+..+.+..|.+.++++.+.+. .+..     .++...+ ..+++++.|+++||+|||+++..+.+++.++.+.+
T Consensus        26 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~  104 (490)
T PRK10642         26 AMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLI-RPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCI  104 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344455566667778877777543322 1221     2333334 78999999999999999999999999999998888


Q ss_pred             HHHH--H--------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 041627           78 SWAF--I--------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA------  141 (204)
Q Consensus        78 ~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------  141 (204)
                      .+.+  .        .+...+++.|.+.++..+....+++|++|+++|++..++......+|..+++.+...+.      
T Consensus       105 a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~  184 (490)
T PRK10642        105 GLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA  184 (490)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            7765  1        26778889999999999999999999999999999999988877777777776554332      


Q ss_pred             --HhhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          142 --DLVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       142 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                        ..+|||+.|++...+.++. ++....+||+++
T Consensus       185 ~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~  217 (490)
T PRK10642        185 NFLDWGWRIPFFIALPLGIIG-LYLRHALEETPA  217 (490)
T ss_pred             HhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChh
Confidence              2578999998865444433 334456788743

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.77  E-value=5.7e-17  Score=129.73  Aligned_cols=160  Identities=19%  Similarity=0.116  Sum_probs=118.3

Q ss_pred             hHHhhhHHHHHHc-----CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----
Q 041627           12 TVMYYSPTIVQMA-----GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----   81 (204)
Q Consensus        12 ~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----   81 (204)
                      .+....|.+..+.     ..++.+.++..+....+ ..+++++.|+++||+|||+.+..+.++..++.+......     
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig-~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~  112 (502)
T TIGR00887        34 CISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIG-TLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK  112 (502)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence            3444455554432     23344445555555555 899999999999999999999988888887776655432     


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH----------------
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD----------------  142 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------  142 (204)
                         ..+...+++.+.+.++..+....+++|.+|+++|+++.++......+|..+++.+...+..                
T Consensus       113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  192 (502)
T TIGR00887       113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCT  192 (502)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence               4567788888998888889999999999999999999999999999998888887665432                


Q ss_pred             -------hhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          143 -------LVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       143 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                             ..+||..+.+.++..++. .+..+++||+++
T Consensus       193 ~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr  229 (502)
T TIGR00887       193 GSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPR  229 (502)
T ss_pred             ccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHH
Confidence                   236888886655544443 445567899854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.77  E-value=1.7e-17  Score=136.53  Aligned_cols=138  Identities=17%  Similarity=0.193  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCc
Q 041627           36 SLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ  113 (204)
Q Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  113 (204)
                      +....+..+++.++.|+++||+|||+++..+.++.+++.+++.+..  ..++...++.+++..+..+..+.+++|++|++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~  680 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD  680 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            3344444799999999999999999999998888888877766554  34444455556666666778889999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcC
Q 041627          114 YRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLT  175 (204)
Q Consensus       114 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~  175 (204)
                      .|++++|+.+..+++|++++|.+.+.+.+. +...++++.+++.+++.++ ..++|||+++.
T Consensus       681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll-~~~LPET~~~~  740 (742)
T TIGR01299       681 KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL-ALKLPDTRGQV  740 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH-HHhCCCCcccc
Confidence            999999999999999999999999877664 3445677666666665444 44569997653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.76  E-value=1.7e-17  Score=131.50  Aligned_cols=149  Identities=13%  Similarity=0.052  Sum_probs=125.7

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccc
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIGLALYITFFAPGM   98 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   98 (204)
                      +++++..+.+...+..... ..+++++.|+++||+|||+.+..+.++..+..+......    ..+++.+++.+.+.+..
T Consensus        70 ~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYG-QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHH-HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            5788888888888888888 899999999999999999999998888777766654331    45677788889888888


Q ss_pred             cccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627           99 GPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-GTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus        99 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      .+....+++|++|+++|+++.++......+|..+++.+.+.+.+.. +|+..|++.+++.++..+..+...+|++
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p  223 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP  223 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999999999988884 9999999888877766555555555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.76  E-value=3.3e-17  Score=128.79  Aligned_cols=167  Identities=17%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcC---CCchhhhh---hHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAG---FQSNQLAL---LPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~   77 (204)
                      +.+......+....|.+.++++   .++.+.+.   ..+....+ ..++++++|+++||+|||+.+..+..++.++.+..
T Consensus        32 ~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  110 (432)
T PRK10406         32 LVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLM-RPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI  110 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            3445566667777788888874   34443222   22333333 56999999999999999999999999998888877


Q ss_pred             HHHH----------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 041627           78 SWAF----------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA------  141 (204)
Q Consensus        78 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------  141 (204)
                      .+.+          ..+.+.|++.+.+.++..+....+++|.+|+++|++..++.......|..+++.+...+.      
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  190 (432)
T PRK10406        111 ACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA  190 (432)
T ss_pred             hhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            5543          247778899999988899999999999999999999999887777777776666544333      


Q ss_pred             --HhhCcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          142 --DLVGTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       142 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                        +.+|||..|++.++..++. .......||++
T Consensus       191 ~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        191 ELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             HHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence              2578999998766655444 33334456654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.76  E-value=6.7e-17  Score=127.85  Aligned_cols=169  Identities=40%  Similarity=0.732  Sum_probs=129.3

Q ss_pred             hhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH------
Q 041627            7 FTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA------   80 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------   80 (204)
                      ..+.+....+.|.+.++.|++..+.+........+ ..++.++.|+++||+|||+.+..+..+..++.+.+...      
T Consensus       297 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (481)
T TIGR00879       297 FTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV-NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT  375 (481)
T ss_pred             HhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            34455667888999999999987655555555445 79999999999999999999888877766665555421      


Q ss_pred             ------H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHH
Q 041627           81 ------F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLIL  153 (204)
Q Consensus        81 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  153 (204)
                            . .......++......+..+....+..|.+|+++|+++.++.+...++++++++.+.+.+.+..+|+..|++.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~  455 (481)
T TIGR00879       376 GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFF  455 (481)
T ss_pred             CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhH
Confidence                  1 122223333344455556777788899999999999999999999999999999999999988999899888


Q ss_pred             HHHHHHHHHHHHhhccCCCCcCH
Q 041627          154 AGIAVLAVVFVILFVPETQGLTF  176 (204)
Q Consensus       154 ~~~~~i~~~~~~~~~~e~~~~~~  176 (204)
                      +++.++..+...++.||+++++.
T Consensus       456 ~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       456 GGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHHHHHHHheecccCCCCCh
Confidence            88888877777777788876543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=6.6e-17  Score=129.62  Aligned_cols=184  Identities=41%  Similarity=0.745  Sum_probs=148.3

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +.|+|++|++...+|.+.+.++.|.+...  ...+........++..+..++.||+|||+.++.+...+.++.+++....
T Consensus       303 ~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  303 QLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             HHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence            57899999999999999999999988664  3444444555788889999999999999999999999988888766442


Q ss_pred             ---------------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           82 ---------------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        82 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                                     ..+....+....+..+..++.|.+.+|.+|.+.|+++.++....+++.+.+....+.......+.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~  460 (513)
T KOG0254|consen  381 VFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGI  460 (513)
T ss_pred             HHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                           23344556667778888899999999999999999999999999999988877777666666554


Q ss_pred             chhhhHHHHHHHHHHH-HHHhhccCCCCcCHHHHHHHHhchh
Q 041627          147 GSTFLILAGIAVLAVV-FVILFVPETQGLTFLEVEQRWKERA  187 (204)
Q Consensus       147 ~~~~~~~~~~~~i~~~-~~~~~~~e~~~~~~~~~~~~~~~~~  187 (204)
                      ...|..+..++.+... ..++++|||++++.++.++.+....
T Consensus       461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~  502 (513)
T KOG0254|consen  461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI  502 (513)
T ss_pred             cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence            4567777777777666 6778899999999999888766543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.76  E-value=1.9e-17  Score=132.16  Aligned_cols=166  Identities=16%  Similarity=0.105  Sum_probs=133.3

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +......+......|.+.+++|.++.+.++..+....+ ..++.++.|+++||+|||+.+..+..+..++.+......  
T Consensus        30 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  108 (496)
T PRK03893         30 LLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFIS-RWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGY  108 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33445556677788999999999999988888888777 899999999999999999999988888887777766654  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      ..+...+++.+.+.++..+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.|++.... .+..
T Consensus       109 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~  187 (496)
T PRK03893        109 WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFA  187 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHH
Confidence            556667777788777778888899999999999999999999999999999999999999989999888764333 2222


Q ss_pred             HHHHhhccCC
Q 041627          162 VFVILFVPET  171 (204)
Q Consensus       162 ~~~~~~~~e~  171 (204)
                      +......||+
T Consensus       188 ~~~~~~~p~~  197 (496)
T PRK03893        188 LWLRKNLPEA  197 (496)
T ss_pred             HHHHHhCCCc
Confidence            3333445654

>PRK03699 putative transporter; Provisional

Probab=99.75  E-value=3.6e-17  Score=127.17  Aligned_cols=153  Identities=9%  Similarity=0.033  Sum_probs=125.2

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHH
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIG   86 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~   86 (204)
                      ....+...+|.+.+++|+++.+.+...+....+ ..++.++.|++.||+|||+.+..+..+..++........  ..+..
T Consensus        22 ~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~-~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~  100 (394)
T PRK03699         22 LVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAG-ILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSI  100 (394)
T ss_pred             HHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence            345677888999999999999988888877776 899999999999999999999988888877777666544  55566


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhhHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD-LVGTGSTFLILAGIAVLAVV  162 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~  162 (204)
                      .+.+.+.+.+...+....++.|.+|+++|+++.+..+....+++.++|.+.+.+.. ..+|++.|...+.+.++..+
T Consensus       101 ~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        101 AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            67777777776777778899999999999999998888888888999988887765 46899999887776655543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.75  E-value=3.3e-17  Score=126.23  Aligned_cols=170  Identities=16%  Similarity=0.080  Sum_probs=125.2

Q ss_pred             hhhhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHH-hhHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWA   80 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~   80 (204)
                      .+....+.....+.+|.+. +++|.++.+.++..+..... ..+.+++.|.++||+|||+.++. +.....++.......
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIV-GIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            4556667777788888776 56899999989888877776 78889999999999999887654 444444444444443


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhh--hhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC--GGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                      .  +.+...+.+.+.......+....+..|..|++.|+.+  .+.......+|..+++.+.+.+.+..+|++.|++.+.+
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~  164 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA  164 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence            3  3344455555555555566667778888887777654  57777778899999999999998889999999988877


Q ss_pred             HHHHHHHHHhhccCCCC
Q 041627          157 AVLAVVFVILFVPETQG  173 (204)
Q Consensus       157 ~~i~~~~~~~~~~e~~~  173 (204)
                      .++..+...+++||.++
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       165 FVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHhCCCccc
Confidence            77666666666787543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.75  E-value=1e-17  Score=132.85  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=126.2

Q ss_pred             hHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-----H--HHH
Q 041627           12 TVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-----F--ISV   84 (204)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~--~~~   84 (204)
                      .+....|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+++..+.++..+..+.....     .  ..+
T Consensus        47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  125 (467)
T PRK09556         47 NFKAAQNDMISTYGLSTTELGMIGLGFSIT-YGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM  125 (467)
T ss_pred             ChhhhhHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            344558899999999999999988888777 89999999999999999999988887777766655542     1  566


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---CcchhhhHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV---GTGSTFLILAGIAVLAV  161 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~  161 (204)
                      ...+++.+.+.+...+....+++|++|+++|+++.|+......+|..+++.+...+.+..   +|+..|.+.+.+.++..
T Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~  205 (467)
T PRK09556        126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG  205 (467)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence            777888888877778888899999999999999999999999999999888876665543   47777776666665555


Q ss_pred             HHHHhhccCC
Q 041627          162 VFVILFVPET  171 (204)
Q Consensus       162 ~~~~~~~~e~  171 (204)
                      +..+++.+++
T Consensus       206 i~~~~~~~~~  215 (467)
T PRK09556        206 FIGLRYGSDS  215 (467)
T ss_pred             HHHHHhCCCC
Confidence            5555555544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.75  E-value=1.6e-16  Score=126.76  Aligned_cols=167  Identities=11%  Similarity=0.069  Sum_probs=112.2

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHH-HHHHH--
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL-LSWAF--   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~~~~--   81 (204)
                      ....++.+..|+|.++++ +|.+..+..........+ ..++.++.|+++||+|||+.+..+.+...+.... .....  
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIG-MLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN  340 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            445678888999999864 688877655444444444 7889999999999999999887776543333222 11111  


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAV  158 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  158 (204)
                        ..+...+++.+.+.+...+....+..|.+|++.|+++.|+.+.....++.++|.+.+++.+..+ |+.+++...+..+
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence              2222333333443333445556778899999999999998777777888899999998887655 5556555555555


Q ss_pred             HHHHHHHhhccCCCCc
Q 041627          159 LAVVFVILFVPETQGL  174 (204)
Q Consensus       159 i~~~~~~~~~~e~~~~  174 (204)
                      ++.+ ..+++||++++
T Consensus       421 i~~~-~~~~~pes~~~  435 (490)
T PRK10642        421 IGLI-TGVTMKETANR  435 (490)
T ss_pred             HHHH-HHHHhccccCC
Confidence            5544 34556998654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.75  E-value=7.5e-17  Score=127.49  Aligned_cols=158  Identities=13%  Similarity=0.104  Sum_probs=120.4

Q ss_pred             HHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH------HHHHH
Q 041627           13 VMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------ISVIG   86 (204)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------~~~~~   86 (204)
                      +...+|.+.++ |.++.+.++..+..... ..+++++.|+++||+|||+++..+..+.++..+.+.+..      ..+..
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~-~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  125 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV  125 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHH-HHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence            45667877777 99999988888887777 899999999999999999999999888887777665431      34455


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF-LTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      .+.+.+.+.+...+.....+.|++|+++|+++.++.+....+|+.+.+++. ..+....+|++.|++.+.+.++..++..
T Consensus       126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            566777777666666667888999999999999999888888865444433 3333345899999887777766656666


Q ss_pred             hhccCCC
Q 041627          166 LFVPETQ  172 (204)
Q Consensus       166 ~~~~e~~  172 (204)
                      +++||++
T Consensus       206 ~~~~~~~  212 (452)
T PRK11273        206 AMMRDTP  212 (452)
T ss_pred             HHccCCH
Confidence            6677764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.75  E-value=2e-17  Score=130.21  Aligned_cols=158  Identities=13%  Similarity=0.089  Sum_probs=122.9

Q ss_pred             HHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH------HHHHH
Q 041627           13 VMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------ISVIG   86 (204)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------~~~~~   86 (204)
                      +....|.+. +.|.++.+.++..+..... ..+++++.|+++||+|||+.+..+..+..++.+......      ..+..
T Consensus        46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  123 (438)
T TIGR00712        46 FALAMPYLV-EQGFSKGELGFALSAISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFV  123 (438)
T ss_pred             HHhhhHHHH-HcCCCHhHhHHHHHHHHHH-HHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence            345566655 4699999988888888777 899999999999999999998888877777766654321      33445


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhhHHHHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD-LVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      .+.+.+.+.+...+.....+.|++|+++|+++.++.+....+++.+++.+.+...+ ..+|+..|++.+++.++..+...
T Consensus       124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       124 LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            56666766666667777888999999999999999999999999998888765444 46899999988888777666666


Q ss_pred             hhccCCC
Q 041627          166 LFVPETQ  172 (204)
Q Consensus       166 ~~~~e~~  172 (204)
                      ++.||++
T Consensus       204 ~~~~~~~  210 (438)
T TIGR00712       204 AMMRDTP  210 (438)
T ss_pred             HhccCCH
Confidence            6677753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.75  E-value=4.7e-17  Score=126.46  Aligned_cols=148  Identities=17%  Similarity=0.046  Sum_probs=126.4

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      .+...+.+|.+.+++|.+..+.++..+....+ ..+++++.|+++||+|||+++..+..+.+++.+...+.+  ..+...
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~-~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVT-MGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            35677889999999999999999988888888 799999999999999999999999999999999888766  666777


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhHHHHHHHH
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-GTGSTFLILAGIAVL  159 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i  159 (204)
                      +++.+.+.+...+....++.|.+| ++|+++.+........|..+++.+.+.+.+.. +|+..+...+...++
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            888888888777777888899987 78999999999988899999999998887775 788877665544433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.74  E-value=9.8e-17  Score=127.38  Aligned_cols=157  Identities=15%  Similarity=0.020  Sum_probs=130.3

Q ss_pred             hhhhhhhhhHHhhhHHHHHH---cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM---AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSW   79 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~   79 (204)
                      +.+..++|++..++|.|+++   +|++..+.+...+..... ..++.+++|+++|| +|||+++..+..+..++.+.+..
T Consensus        20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~-~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~   98 (475)
T TIGR00924        20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSAL-VYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM   98 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH-HHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence            45567889999999999876   799999988888888777 89999999999999 89999999999988888777665


Q ss_pred             HH--HHHHHHHHHHHHhcccccccchhhcccccCCcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           80 AF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQY---RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                      ..  ..+...+.+.+.+.+...+....+++|.+|+++   |+++.++.+...++|+.++|.+.+.+.+..+|+..|...+
T Consensus        99 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924        99 SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            43  344445566677777777888899999998764   8889999999999999999999999999899999988866


Q ss_pred             HHHHHHH
Q 041627          155 GIAVLAV  161 (204)
Q Consensus       155 ~~~~i~~  161 (204)
                      ...+++.
T Consensus       179 ~~~~~~~  185 (475)
T TIGR00924       179 VGMVIGL  185 (475)
T ss_pred             HHHHHHH
Confidence            5554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00898 2A0119 cation transport protein

Probab=99.74  E-value=2.2e-17  Score=132.19  Aligned_cols=153  Identities=24%  Similarity=0.240  Sum_probs=125.3

Q ss_pred             hhhHHHHHHcCCC---chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHH
Q 041627           15 YYSPTIVQMAGFQ---SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLAL   89 (204)
Q Consensus        15 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   89 (204)
                      .+.|.+.++++++   +.+.++..+....+ ..++.++.|+++||+|||+++..+.++..++.+...+..  ..+.+.++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g-~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  188 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVG-VLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL  188 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHH-HHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            5667788889998   77777777887777 899999999999999999999998888888777766654  66777888


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhcc
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVP  169 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  169 (204)
                      +.+.+.++..+....++.|.+|+++|+++.++......+|.++++.+...+.+   |++.+++.++..++..+. .+++|
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~-~~~~~  264 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLL-SWFVP  264 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH-HHhcC
Confidence            88888888889999999999999999999999988888888888877655443   888888877776665444 46788


Q ss_pred             CCC
Q 041627          170 ETQ  172 (204)
Q Consensus       170 e~~  172 (204)
                      |++
T Consensus       265 esp  267 (505)
T TIGR00898       265 ESP  267 (505)
T ss_pred             CCh
Confidence            874

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.74  E-value=1.3e-16  Score=121.43  Aligned_cols=160  Identities=21%  Similarity=0.230  Sum_probs=135.6

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .+....+.+......|.+.++.|.++.+.+...+..... ..++.++.|+++||+|||+.+..+..+..++........ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   86 (352)
T cd06174           8 FFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLG-YALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS   86 (352)
T ss_pred             HHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhcc
Confidence            345566677888899999999999999988887777777 899999999999999999999998888888877766554 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       ......+.+.+.+.+...+....+..|.+|+++|++..++......+|..+++.+.+.+.+..+|+..+++.+...++.
T Consensus        87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (352)
T cd06174          87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL  166 (352)
T ss_pred             HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             5566667777777777888889999999999999999999999999999999999999999888988888777666655


Q ss_pred             HHH
Q 041627          161 VVF  163 (204)
Q Consensus       161 ~~~  163 (204)
                      .+.
T Consensus       167 ~~~  169 (352)
T cd06174         167 ALL  169 (352)
T ss_pred             HHH
Confidence            443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.74  E-value=1.4e-16  Score=126.79  Aligned_cols=151  Identities=16%  Similarity=0.036  Sum_probs=124.5

Q ss_pred             hhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +.+..++|++..+++.|++ ++|.++.+.++..+.+... .....+++|+++|| +|||+++..+.++..++.+.+....
T Consensus        24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~-~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~  102 (489)
T PRK10207         24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAAL-VYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL  102 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456778888888888876 4899998877777777666 67778899999999 9999999999999999888777654


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCc--chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ--YRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                         ..+.+.+.+.+.+.+...+...+++.|.+|++  +|++++++.+...++|..++|.+.+++.+..||++.|++..+
T Consensus       103 ~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        103 LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence               22334566677777778888889999999887  457789999999999999999999999999999999887544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.73  E-value=7.1e-17  Score=127.68  Aligned_cols=157  Identities=16%  Similarity=0.164  Sum_probs=122.6

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHH-H
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIG-L   87 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~-~   87 (204)
                      +.+..+.|.+.+++|.+.++.++..+..... ..++.++.|+++||+|||+.++.+..+..+..+.+.+..  ..+.. .
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  114 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAV-LYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA  114 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHH-HHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4456678999999999999988888887766 688899999999999999999988888877777665554  33332 2


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      +++.+.+.+...+....++.|++| ++|+++.++.+....++..++|.+.+.+.+..||++.|++.+++.++..+...+.
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            355555555444555677788886 7899999999999999999999999999999999999999888776655444333


Q ss_pred             cc
Q 041627          168 VP  169 (204)
Q Consensus       168 ~~  169 (204)
                      .+
T Consensus       194 ~~  195 (455)
T TIGR00892       194 RP  195 (455)
T ss_pred             CC
Confidence            33

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.73  E-value=3.3e-16  Score=123.62  Aligned_cols=157  Identities=13%  Similarity=-0.017  Sum_probs=120.7

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-cchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ....++|++..++|.++++ +|+++.+.+...+..... ..++.+++|+++||+ |||+.+.++.++..++.+.+.... 
T Consensus        20 ~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~-~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~   98 (493)
T PRK15462         20 WEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSL-VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456788999999999865 799999877777776655 788999999999999 999999999888887766554321 


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCc--chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ--YRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIA  157 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (204)
                        ........+...+.+...+...++++|.+|++  +|.+++++.+...++|+.++|.+.+.+.+..||+..|...++..
T Consensus        99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm  178 (493)
T PRK15462         99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM  178 (493)
T ss_pred             chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence              11222222223334444566678999999976  69999999999999999999999999999999999998766554


Q ss_pred             HHHHH
Q 041627          158 VLAVV  162 (204)
Q Consensus       158 ~i~~~  162 (204)
                      +++.+
T Consensus       179 ~l~li  183 (493)
T PRK15462        179 IAGLV  183 (493)
T ss_pred             HHHHH
Confidence            44433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.73  E-value=1.3e-16  Score=126.17  Aligned_cols=159  Identities=18%  Similarity=0.129  Sum_probs=124.3

Q ss_pred             hHHhhhHHHHHHcCCC--------chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627           12 TVMYYSPTIVQMAGFQ--------SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus        12 ~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      .+....|.+..+.+.+        ..+.++..+....+ ..+++++.|+++||+|||+.+..+..+..++........  
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
T TIGR00879        46 VIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVG-GFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA  124 (481)
T ss_pred             hhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHH-HHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445556666666655        77778888887777 899999999999999999999998888887777664433  


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHH---HHHHHhhCcchhhhHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNF---LTVADLVGTGSTFLILAG  155 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~  155 (204)
                         +.+++.+++.+.+.+...+....++.|++|+++|+++.++.+....+|..+++.+.   ....+..+|++.|++.+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~  204 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI  204 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence               35777788888888888888889999999999999999999999999999999988   444456789998888554


Q ss_pred             HHHHHHHHHHhhccCCC
Q 041627          156 IAVLAVVFVILFVPETQ  172 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~~  172 (204)
                      ..++. +...+++||++
T Consensus       205 ~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       205 PAGLL-FLGLFFLPESP  220 (481)
T ss_pred             HHHHH-HHHHhcCCCCh
Confidence            44433 44455677764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=99.72  E-value=1.8e-16  Score=124.77  Aligned_cols=152  Identities=19%  Similarity=0.125  Sum_probs=116.5

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhH-HHHHHHH----HHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLP-SLVVAGT----NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL   77 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~----~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~   77 (204)
                      .+.++.....+....|.+.++++.++.+.+.+. +......    ..+++++.|+++||+|||+.++.+..+..++...+
T Consensus        24 ~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~  103 (434)
T PRK15075         24 NFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI  103 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence            455666777888999999999998877654433 2222221    24688999999999999999999999888888877


Q ss_pred             HHHH--H--------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-------
Q 041627           78 SWAF--I--------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV-------  140 (204)
Q Consensus        78 ~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------  140 (204)
                      .+.+  .        .+.+.+++.+.+.+...+....+++|++|+++|+++.++.....+++..+++.+.+.+       
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~  183 (434)
T PRK15075        104 AFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPA  183 (434)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            6654  2        2466778888887777777789999999999999999998888887777777666554       


Q ss_pred             -HHhhCcchhhhHHH
Q 041627          141 -ADLVGTGSTFLILA  154 (204)
Q Consensus       141 -~~~~~~~~~~~~~~  154 (204)
                       .+.+|||+.|++..
T Consensus       184 ~~~~~gWr~~f~~~~  198 (434)
T PRK15075        184 QMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHhccchHHHHHHHH
Confidence             24678998887643

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.9e-16  Score=124.31  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=135.1

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccc
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIGLALYITFFAPGM   98 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   98 (204)
                      ++++++++.+++.+....+ .+++.+..|+++||+|-|+++..+.++.++..++.....    +.+++.|++.|.+.+..
T Consensus        67 ~~~ws~~~k~~i~ss~~~G-~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWG-YILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             eecCCHHHHHHHHHHHHHH-HHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            5788889999999999999 899999999999999999999999999998888877665    56688899999999999


Q ss_pred             cccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-hCcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627           99 GPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-VGTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus        99 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      .+....+.+++.|+++|++..++......+|.++..++.|.+.+. .||+..|++.+++.++..++.+++..|++
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999998 99999999999999988777666665553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.72  E-value=2.6e-16  Score=122.27  Aligned_cols=158  Identities=14%  Similarity=0.119  Sum_probs=122.4

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALY   90 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
                      .......+.+.++.+.++.+.++..+..... ..+..++.|+++||+|||++++.+..+..++.+.+..... ....+++
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~-~~~~r~l   97 (393)
T PRK11195         20 NALLFAAIALLKELHYPDWSQPLLQMFFVLA-YIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH-PLLAYGL   97 (393)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3445556667788998888878877777777 8999999999999999999999998888776665544332 2566777


Q ss_pred             HHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccC
Q 041627           91 ITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPE  170 (204)
Q Consensus        91 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  170 (204)
                      .+.+.+...|...+++.|++|+++|+++.++......++..++|.+.+.+.+.. |+..+.+.+...++. .+..+.+||
T Consensus        98 ~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~  175 (393)
T PRK11195         98 VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPR  175 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCC
Confidence            888888888999999999999999999999999999999999999999887753 555555444333333 334456676


Q ss_pred             CC
Q 041627          171 TQ  172 (204)
Q Consensus       171 ~~  172 (204)
                      ++
T Consensus       176 ~~  177 (393)
T PRK11195        176 LG  177 (393)
T ss_pred             Cc
Confidence            53

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.72  E-value=3.7e-16  Score=121.59  Aligned_cols=154  Identities=17%  Similarity=0.063  Sum_probs=122.5

Q ss_pred             hhhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            4 FQQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      +....+.....+.+|.+. +++|.++.+.++..+..... ..+++++.|+++||+|||+++..+.++..++........ 
T Consensus        25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~  103 (399)
T PRK05122         25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLA-TLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGL  103 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhh
Confidence            344455566777888764 56899999989888888877 899999999999999999999998887766554433221 


Q ss_pred             ---------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627           82 ---------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI  152 (204)
Q Consensus        82 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  152 (204)
                               ..+...+++.+.+.+...+....+..|..|+++|+++.++......+|..+++.+.+.+.+..+|+..+++
T Consensus       104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  183 (399)
T PRK05122        104 LAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLL  183 (399)
T ss_pred             hhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence                     34566777888877777777788889999999999999998888888989999999999898999877766


Q ss_pred             HHHHHH
Q 041627          153 LAGIAV  158 (204)
Q Consensus       153 ~~~~~~  158 (204)
                      ......
T Consensus       184 ~~~~~~  189 (399)
T PRK05122        184 IMLLAL  189 (399)
T ss_pred             HHHHHH
Confidence            554443

>TIGR00897 2A0118 polyol permease family

Probab=99.72  E-value=2e-16  Score=123.31  Aligned_cols=164  Identities=10%  Similarity=-0.056  Sum_probs=117.7

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH---H--
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW---A--   80 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~--   80 (204)
                      ...+.+....+.|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++......   .  
T Consensus        25 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~  103 (402)
T TIGR00897        25 FMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIA-AAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHA  103 (402)
T ss_pred             HHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            344445566788888899999999989988888777 8999999999999999999999988887776554321   1  


Q ss_pred             H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhCcchhhhHHHHHHH
Q 041627           81 F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISN-LIVAQNFLTVADLVGTGSTFLILAGIAV  158 (204)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (204)
                      . ..+...+.+.+.+.....+.......|.+|+++|+++.|+......+|. .+++.+.+.+.+..||+..++.......
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  183 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVL  183 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            1 3344556655555444445555677889999999999999999988886 5788888888777886555554443333


Q ss_pred             HHHHHHHhhccC
Q 041627          159 LAVVFVILFVPE  170 (204)
Q Consensus       159 i~~~~~~~~~~e  170 (204)
                      +..++..+..++
T Consensus       184 ~~~~~~~~~~~~  195 (402)
T TIGR00897       184 TGGVIALFSNKD  195 (402)
T ss_pred             HHHHHHHhccCC
Confidence            333333343443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.71  E-value=2.6e-16  Score=124.95  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=110.9

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ++....+++...|+|.|+++ +|++..+.+........+ ..++.++.|+++||+|||+.+.....+..+......... 
T Consensus       268 ~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~-~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~  346 (467)
T PRK09556        268 IFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIG-ALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA  346 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            34445556778899988865 899998877766666666 899999999999999999876654433333222211111 


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHH------------hhC
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVAD------------LVG  145 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~------------~~~  145 (204)
                         .......+..+....+..........|.+|++.||++.|+.+..+++ |+.++|.+.|.+.+            ..+
T Consensus       347 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~  426 (467)
T PRK09556        347 TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG  426 (467)
T ss_pred             CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC
Confidence               22223333334333222222335667999999999999999999987 66999999999999            567


Q ss_pred             cchhhhHHHHHHHHHHHHHH
Q 041627          146 TGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~~~  165 (204)
                      |+..|++..+..+++.+...
T Consensus       427 ~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        427 WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            88888887666666654433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.71  E-value=4e-16  Score=121.78  Aligned_cols=154  Identities=12%  Similarity=0.009  Sum_probs=124.7

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----HH
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----IS   83 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~   83 (204)
                      ......+..|.+.+++|.++.+.++..+....+ ..+++++.|++.||+|||+.+..+..+..++........     ..
T Consensus        18 ~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g-~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~   96 (410)
T TIGR00885        18 ANDITNPMVPQFQQAFTLTAFQAALVQSAFYGG-YFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTL   96 (410)
T ss_pred             HHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            334556888999999999999988888888777 899999999999999999999999998888877654321     44


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD---------------------  142 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------------  142 (204)
                      +...+++.+.+.+...+....++.+..|+++|++..++.+....+|..+++.+.+.+..                     
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA  176 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence            56667777777777778888889999999999999999999999999999998876642                     


Q ss_pred             -----hhCcchhhhHHHHHHHHHHHH
Q 041627          143 -----LVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus       143 -----~~~~~~~~~~~~~~~~i~~~~  163 (204)
                           ..+|+.+|++.+.+.++..+.
T Consensus       177 ~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       177 IKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 235888888877766655433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12382 putative transporter; Provisional

Probab=99.71  E-value=5e-16  Score=120.63  Aligned_cols=149  Identities=12%  Similarity=0.047  Sum_probs=116.1

Q ss_pred             hhhhhhhHHhhhHHH-HHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH-----
Q 041627            6 QFTGINTVMYYSPTI-VQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW-----   79 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----   79 (204)
                      .+.+.....+.+|.+ .+++|.+..+.+...+..... ..+++++.|+++||+|||+.+..+.+...++.+....     
T Consensus        27 ~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~-~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~  105 (392)
T PRK12382         27 TYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLA-TVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILP  105 (392)
T ss_pred             HHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHH-HHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccc
Confidence            344455666777765 467999999999999988888 8999999999999999999998887766654432211     


Q ss_pred             -----HHHHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           80 -----AFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        80 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                           ....+.+.+.+.+.+.+...+....+..|..|+++|+++.++.......+..++|.+.+.+.+..+|+..+.+..
T Consensus       106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  185 (392)
T PRK12382        106 VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTM  185 (392)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence                 114556667777777766666677788999999999999999998888899999999998888889886655443


Q ss_pred             H
Q 041627          155 G  155 (204)
Q Consensus       155 ~  155 (204)
                      .
T Consensus       186 ~  186 (392)
T PRK12382        186 V  186 (392)
T ss_pred             H
Confidence            3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.70  E-value=1.1e-15  Score=119.67  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=125.1

Q ss_pred             hhhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-   80 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-   80 (204)
                      ++..+...+.+.+..+.+.+ ++|+++++.+++.++.... ..+..++.|++.||+|.|+++..+.++..+..+...+. 
T Consensus        43 f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~-~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~  121 (462)
T PRK15034         43 LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVS-GALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV  121 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666667777777766 7999999999988888888 78889999999999999999999998888888777764 


Q ss_pred             ----H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-----HhhC----
Q 041627           81 ----F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA-----DLVG----  145 (204)
Q Consensus        81 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~----  145 (204)
                          +  ..+.+.+++.+.. ++..+.....+++++|+++||++.|+....+++|..+++.+.+.+.     ..+|    
T Consensus       122 ~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~  200 (462)
T PRK15034        122 QNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGV  200 (462)
T ss_pred             cccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                2  5666777777775 5566778889999999999999999998777778777666665433     2222    


Q ss_pred             ---------cchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          146 ---------TGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       146 ---------~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                               |+...++...+.++..++.++..++.
T Consensus       201 ~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        201 PQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                     44555566666656655555555543

>PRK09952 shikimate transporter; Provisional

Probab=99.70  E-value=9.2e-16  Score=120.84  Aligned_cols=165  Identities=13%  Similarity=0.031  Sum_probs=117.2

Q ss_pred             hhhhhhhHHhhhHHHH-HHc--CCCchhhhhhHHH----HHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH
Q 041627            6 QFTGINTVMYYSPTIV-QMA--GFQSNQLALLPSL----VVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS   78 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~--g~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   78 (204)
                      ++.....+....|.+. +++  +.++.+ +...+.    .......+++++.|+++||+|||+.+..+..++.++.+.+.
T Consensus        34 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~  112 (438)
T PRK09952         34 DWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIG  112 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence            3344444555555443 344  566553 544321    22233678889999999999999999999999988888776


Q ss_pred             HHH--H--------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------
Q 041627           79 WAF--I--------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD------  142 (204)
Q Consensus        79 ~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------  142 (204)
                      +.+  .        .+...+++.+.+.++..+....+++|++|+++|++..+.......+|..+++.+...+..      
T Consensus       113 ~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~  192 (438)
T PRK09952        113 LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQ  192 (438)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            654  1        366778889999988888888999999999999999998888888888887766655442      


Q ss_pred             --hhCcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          143 --LVGTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       143 --~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                        .++||..|++.+...++. +......||++
T Consensus       193 ~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        193 FLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             hhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence              478999988766554332 23333456654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.69  E-value=1.5e-15  Score=117.69  Aligned_cols=156  Identities=9%  Similarity=0.013  Sum_probs=129.5

Q ss_pred             HHhhhHHHHHHcCCCchh-hhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHH
Q 041627           13 VMYYSPTIVQMAGFQSNQ-LALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLAL   89 (204)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   89 (204)
                      .....|.+.+++|+++++ .+.+.+..... ..+..++.|+++||+|.|+++..+.+...+...+..+..  ..+.+.++
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ys-Yal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~  123 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYS-HLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV  123 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788899999999 89999999988 999999999999999999999999999999888888764  77888899


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHH--HHHHHHHHHHHHhh
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLIL--AGIAVLAVVFVILF  167 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~  167 (204)
                      +.|.+.+... ....++..++|+++|+++.|+.+....+|.++++++.+. ...+||+....+.  ........++..++
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888 888999999999999999999999999999999999998 5678887654332  12222223344556


Q ss_pred             ccCC
Q 041627          168 VPET  171 (204)
Q Consensus       168 ~~e~  171 (204)
                      +|..
T Consensus       202 LP~~  205 (511)
T TIGR00806       202 LKRP  205 (511)
T ss_pred             CCCC
Confidence            7744

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.68  E-value=4e-15  Score=118.91  Aligned_cols=156  Identities=15%  Similarity=0.015  Sum_probs=119.5

Q ss_pred             hhhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +++..++|.+..+++.++ +++|+++.+.+...+..... .....+++|+++|| +|||+.+..+..+..++...+....
T Consensus        31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~-~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~  109 (500)
T PRK09584         31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSAL-VYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            456677888999999887 56899988866666555444 34556789999999 5999999999888888777666543


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQY--RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                         ..+...+.+.+.+.+...+....++.|++|+++  |..+.++.+...++|+.++|.+.+++.+..||++.|.+.++.
T Consensus       110 ~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~  189 (500)
T PRK09584        110 HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG  189 (500)
T ss_pred             ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence               233344555666666677777789999998654  456788889999999999999999999999999999886654


Q ss_pred             HHHH
Q 041627          157 AVLA  160 (204)
Q Consensus       157 ~~i~  160 (204)
                      ..++
T Consensus       190 ~~i~  193 (500)
T PRK09584        190 MLIT  193 (500)
T ss_pred             HHHH
Confidence            4443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.68  E-value=9.8e-16  Score=119.94  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=126.1

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH----
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA----   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----   80 (204)
                      ....+........|.+.++.+.++.+.+...+..... ..+++++.|+++||+|||+.+..+..+..++.......    
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~-~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGA-MFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            3445556677888999999888988888888888777 79999999999999999999888776666555443321    


Q ss_pred             -H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHH
Q 041627           81 -F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIA  157 (204)
Q Consensus        81 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (204)
                       .  +.+...+++.+.+.+...+....++.|..|+++|+++.++......+|..+++.+.+.+.+..+|++.+++.+...
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~  186 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT  186 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             1  3444555565665555556667888999999999999999999999999999999999988889988887766655


Q ss_pred             HHHHHHHHhhccCCC
Q 041627          158 VLAVVFVILFVPETQ  172 (204)
Q Consensus       158 ~i~~~~~~~~~~e~~  172 (204)
                      ++..+ ..+.+||++
T Consensus       187 ~~~~~-~~~~l~~~~  200 (417)
T PRK10489        187 FITLL-PLLRLPALP  200 (417)
T ss_pred             HHHHH-HHHhCCCCC
Confidence            55433 344566653

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.68  E-value=8.7e-16  Score=122.72  Aligned_cols=147  Identities=16%  Similarity=0.153  Sum_probs=108.9

Q ss_pred             hHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHH
Q 041627           12 TVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIG   86 (204)
Q Consensus        12 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~   86 (204)
                      ....++|.+.+ +.|++..+.+...+....+ ..++.++.|+++||+|||+.+..+..+..+..+......    .....
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~-~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFG-AAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            35578899985 7899999888888777776 799999999999999999988776655554433322211    12222


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                      ..+..+....+..+..+.++.|.+|+++|++++++.+....+|+.++|.+.+.+.+.+|++..+...+....+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            2233333344445666788899999999999999999999999999999999999999987776555544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.67  E-value=5.3e-15  Score=115.02  Aligned_cols=169  Identities=14%  Similarity=0.111  Sum_probs=123.2

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HH
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-IS   83 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~   83 (204)
                      +...+++....|.|.+.+++|.+..+.+...+....+ ..++.++.|++.||+|||+.+..+..+..++........ ..
T Consensus       216 ~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~-~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (393)
T PRK09705        216 LINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLG-QAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL  294 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH
Confidence            3445667888999999999999988878777777666 899999999999999999988877666655554433222 11


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAVLAV  161 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~  161 (204)
                      ......+.+...+...+.......+..+ +++|++..++.+..+.+++.++|.+.+++.+..| +...+.+.....++..
T Consensus       295 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        295 PVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            1112233344455555655555566664 6789999999999999999999999999999987 5556666666666665


Q ss_pred             HHHHhhccCCCCc
Q 041627          162 VFVILFVPETQGL  174 (204)
Q Consensus       162 ~~~~~~~~e~~~~  174 (204)
                      +....+.||++++
T Consensus       375 ~~~~~~~~~~~~~  387 (393)
T PRK09705        375 IITLRFAPARFPQ  387 (393)
T ss_pred             HHHHHhccccccc
Confidence            6666778888654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=2.1e-15  Score=118.14  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=120.1

Q ss_pred             hhHHhhhHHHHHHcCCCc--------hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627           11 NTVMYYSPTIVQMAGFQS--------NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .....+.|.+.++.|.++        ...+...+..... ..++.++.|+++||+|||+++..+.++..+......... 
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~-~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~  303 (418)
T TIGR00889       225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFS-EIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP  303 (418)
T ss_pred             HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc
Confidence            344566677777777654        3335555555555 788999999999999999999988887777655444321 


Q ss_pred             -----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHhh------Ccchh
Q 041627           82 -----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSA-TVNWISNLIVAQNFLTVADLV------GTGST  149 (204)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~------~~~~~  149 (204)
                           ..+.+..++.+...+...+....++.|.+|+++|+++.|+.+ ....+|+.++|.+.|.+.+..      ||+..
T Consensus       304 ~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~  383 (418)
T TIGR00889       304 EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTM  383 (418)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHH
Confidence                 122333445555555555666788999999999999999997 567789999999999998874      57888


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCCC
Q 041627          150 FLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      |...+++.+++.++..++.||+++
T Consensus       384 f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       384 WLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccc
Confidence            888888877777777788887743

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.66  E-value=1.7e-15  Score=118.62  Aligned_cols=167  Identities=15%  Similarity=0.125  Sum_probs=124.1

Q ss_pred             hhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           11 NTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      +....+.|.+.++ +|.++.+.+...+....+ ..++.++.+++.||.++++.+..+..+..++.+.....+  ......
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g-~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLG-AALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLC  318 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHH-HHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            4566788888888 899888878777776666 799999999999998877777776666655554444333  222333


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      .++.+.+.+...+...+++.|..|++.|+++.|+......+|+.+++.+.+.+.+..|.+..++..+.+.++..++....
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            33444444444455667889999999999999999999999999999999999999998778877777766666666667


Q ss_pred             ccCCCCcCHHH
Q 041627          168 VPETQGLTFLE  178 (204)
Q Consensus       168 ~~e~~~~~~~~  178 (204)
                      +||.++++.+|
T Consensus       399 ~~~~~~~~~~~  409 (417)
T PRK10489        399 LGELRRFRQTP  409 (417)
T ss_pred             ccccccccccc
Confidence            78876655443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.66  E-value=3.8e-15  Score=114.26  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=116.4

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-----cchHhH-HHhhHHHHHHHHHHHHHH--
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-----GRKKLA-LSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~~--   81 (204)
                      +....+-.|.+.++.|++.++.+..... ... .. ..+++|+++||+     ||||.+ +.+.+...+....+.+..  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~-~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLP-YS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHH-HH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            3455677899999999999998877433 333 23 389999999998     898875 455555555544444331  


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC--------cchhh
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG--------TGSTF  150 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~  150 (204)
                         +.+....++.+.+.....+...+++.|++|+++|+++.++......+|..+++.+.+.+.+..+        |+..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence               2333334444555555567778899999999999999999999999999999999988888888        99999


Q ss_pred             hHHHHHHHHHHHHHHhhccCCC
Q 041627          151 LILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       151 ~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      ++.++..++..+...+..||++
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCCC
Confidence            8877766665544444557753

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=3.4e-15  Score=120.12  Aligned_cols=145  Identities=23%  Similarity=0.259  Sum_probs=121.8

Q ss_pred             cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccc
Q 041627           24 AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPV  101 (204)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  101 (204)
                      +..+........++...+ ..+|++++|+++||+|||++++.+..+..++.+..+++.  ..+.+.+++.|++..+...+
T Consensus       113 ~c~~~~~~~~~~s~~~~G-~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLG-VLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             eeCcHhHHHHHHHHHHHH-HHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence            444555545555666666 899999999999999999999999999999988877776  78888999999999999999


Q ss_pred             chhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          102 PWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       102 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      .+.+..|+.++++|+.+..+ ......++.+++...+++..  +||+.+++...+..+..++ ++..||+++
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR  259 (521)
T ss_pred             hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence            99999999999999999999 88888888888998888877  8999998888777766544 555568754

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.66  E-value=5.3e-15  Score=115.02  Aligned_cols=168  Identities=12%  Similarity=0.080  Sum_probs=115.1

Q ss_pred             hhhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHH-HhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~   81 (204)
                      +....+.....+.+|.+. +++|.++.+.+...+.........+.+++++ +||+|||+.++ .+.+...+.........
T Consensus        25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  103 (393)
T PRK15011         25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR  103 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            444455566777788765 5689999998888776656545666666676 99999998754 44444444444444433


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG--ICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIA  157 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (204)
                        +.+.+...+.+.......+....+..|..|++.|.  ...++.+....+|..++|.+.+.+.+..||+..|+..+...
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~  183 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAF  183 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence              33333444444444455566667777777666553  33467778888999999999999999999999998888777


Q ss_pred             HHHHHHHHhhccCCC
Q 041627          158 VLAVVFVILFVPETQ  172 (204)
Q Consensus       158 ~i~~~~~~~~~~e~~  172 (204)
                      ++..+...+++||.+
T Consensus       184 ~~~~~~~~~~~~~~~  198 (393)
T PRK15011        184 IVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHhhcCccC
Confidence            776666666678764

>TIGR00896 CynX cyanate transporter

Probab=99.66  E-value=4.4e-15  Score=113.86  Aligned_cols=148  Identities=16%  Similarity=0.099  Sum_probs=115.7

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .++....+.+|.+.+++|.++.+.++..+....+ ..++.++.|+++||+|||+.+..+.....++.... ...  ..+.
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~   91 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLC-FAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF   91 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence            3445678899999999999999989888888887 89999999999999999999998887766665554 222  4455


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhhHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG--TGSTFLILAGIAV  158 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  158 (204)
                      ..+++.+.+.+...+....++.|.+| ++|+++.++......+|..+++.+.+.+.+..+  |+..+...+...+
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            56666666666656666677888886 689999999999999999999998888776653  7777766554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.66  E-value=1.8e-15  Score=118.00  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=114.3

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      ......+....|.|.+.++.|.++.+.+........+ ..++.++.|+++||+|||+.+..+.....++........  .
T Consensus       231 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (406)
T PRK11551        231 FTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIG-GALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFA  309 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            3344566777889999999999988877777776666 899999999999999999988776555554444333322  3


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc-chhhhHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT-GSTFLILAGIAVLAV  161 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~  161 (204)
                      ......++.+....+..+....+..|.+|+++|+++.|+.+....+++.++|.+.+.+.+..++ ...++......+++.
T Consensus       310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        310 GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            3333444455555556677788999999999999999999999999999999999998886553 333444333333433


Q ss_pred             H
Q 041627          162 V  162 (204)
Q Consensus       162 ~  162 (204)
                      +
T Consensus       390 ~  390 (406)
T PRK11551        390 L  390 (406)
T ss_pred             H
Confidence            3

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=1.2e-15  Score=101.21  Aligned_cols=129  Identities=22%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             HHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhh
Q 041627           43 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGG  120 (204)
Q Consensus        43 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  120 (204)
                      ..++.++.|++.||+|||+.+..+.....++.+......  +.......+.+...+...+....+..|.+|+++|++..+
T Consensus        11 ~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (141)
T TIGR00880        11 QLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG   90 (141)
T ss_pred             HHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHH
Confidence            688999999999999999999888777777666555433  445555666666666677788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          121 MSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       121 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      +.+....++..+++.+.+.+.+..+|+..+++......+..+...+..||+
T Consensus        91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        91 LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999998888898888887777776666665555653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.65  E-value=5.1e-15  Score=113.77  Aligned_cols=149  Identities=14%  Similarity=0.080  Sum_probs=114.0

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIG   86 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~   86 (204)
                      .....+.+.+.++.|.++.+.+...+..... ..+++++.|+++||+|||+.+..+..+..++........    .....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T TIGR00890       222 LLLIGLYKPYGQSLGLSDGFLVLAVSISSIF-NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA  300 (377)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence            3445566677788888887767666666665 899999999999999999998887777776665554432    11222


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                      ...+.+...+...+....+..|.+|+++|+++.|+.+....+|+.++|.+.+.+.+..||+..+.+.+++.+++
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            33444555555566677889999999999999999999999999999999999999999988887766655544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.65  E-value=5.4e-15  Score=114.50  Aligned_cols=139  Identities=14%  Similarity=0.043  Sum_probs=115.7

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      ....+.....+++|.+.+++|.++.+.++..+....+ ..+++++.|+++||+|||+.+..+..+..++........  +
T Consensus        17 ~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~-~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~   95 (381)
T PRK03633         17 LLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTG-NLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFW   95 (381)
T ss_pred             HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3445566778999999999999999999988888877 899999999999999999999998888888777666554  5


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV  144 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  144 (204)
                      .+.+.+++.+.+.+...+.......+..|+++|+++.+.......+|..+++.+.+.+.+..
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         96 SWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            56667777777776666666666778889999999999999999999999999988776553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.65  E-value=4.4e-15  Score=112.27  Aligned_cols=165  Identities=18%  Similarity=0.132  Sum_probs=134.7

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      ...++.++.+....+.+.+++|+|+.|.+++..+.... +.+..++.|.+.||+|.|+....+.++..+.++...+..  
T Consensus        24 ~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~-GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~  102 (417)
T COG2223          24 DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILV-GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY  102 (417)
T ss_pred             HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHH-hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC
Confidence            34455556666677777788999999999888888888 899999999999999999999999999888888877765  


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC---cchhhhHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG---TGSTFLILAG  155 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~  155 (204)
                         +.++.+.++.+. .++..++...++++++|++++|++.|+.. .+|+|..+...+.+.+....+   |+....+...
T Consensus       103 ~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~  180 (417)
T COG2223         103 PSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVV  180 (417)
T ss_pred             CchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               245555555444 45566777799999999999999999999 899999999999999999888   8888888777


Q ss_pred             HHHHHHHHHHhhccCC
Q 041627          156 IAVLAVVFVILFVPET  171 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~  171 (204)
                      ..++..+..++...|.
T Consensus       181 ~l~v~~v~~~~~~~d~  196 (417)
T COG2223         181 ALAIAAVLAWLGMNDV  196 (417)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            7777777766666554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.64  E-value=1.3e-14  Score=112.25  Aligned_cols=166  Identities=18%  Similarity=0.114  Sum_probs=118.4

Q ss_pred             hhhhhhhhHHhhhHHHHHHcC--CCchhhhhhHHHHHHHH----HHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH
Q 041627            5 QQFTGINTVMYYSPTIVQMAG--FQSNQLALLPSLVVAGT----NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS   78 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~----~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   78 (204)
                      .++...+.+....+.+.++..  .++++.+...+......    ..+++++.|+++||+|||+++..+..+..++.....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            455666777777787777754  33444444444332221    346889999999999999999999888888777766


Q ss_pred             HHH--H--------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-------
Q 041627           79 WAF--I--------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA-------  141 (204)
Q Consensus        79 ~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------  141 (204)
                      ...  .        .+...+++.+.+.+...+....++.|.+|+++|++..+.......+|..+++.+...+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            543  1        35566777777777778888899999999999999999999988889888888766543       


Q ss_pred             -HhhCcchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          142 -DLVGTGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       142 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                       +..+|+..+.+...+.++.. ......||+
T Consensus       164 ~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~  193 (394)
T TIGR00883       164 LLEWGWRIPFLVSAVLVLIGL-YLRRNLEET  193 (394)
T ss_pred             hhccchHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence             34678888876655544432 333345554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.64  E-value=1e-14  Score=113.79  Aligned_cols=166  Identities=19%  Similarity=0.301  Sum_probs=125.7

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-----cchH-hHHHhhHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-----GRKK-LALSSLAGVIISLVL   76 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~   76 (204)
                      ++.|...+.....-+|.++++.|++.++.+.+......   .+..+++|+++||+     |||| .+..+..+.+++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~---~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA---YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            35566677788888999999999999998887444432   58899999999999     7876 566666767666665


Q ss_pred             HHHHH-----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-hCcchhh
Q 041627           77 LSWAF-----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-VGTGSTF  150 (204)
Q Consensus        77 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~  150 (204)
                      +.+..     +.+....++.+.+.....+...+++.|+.|+++|+++.++......+|..+++.+...+.+. .||+..|
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f  164 (402)
T PRK11902         85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY  164 (402)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence            55442     33344444455556666677889999999999999999999999899999999998888875 5899999


Q ss_pred             hHHHHHHHHHHHHHHhhccCCC
Q 041627          151 LILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       151 ~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      ++.+...++..+ ..++.||++
T Consensus       165 ~i~a~~~l~~~l-~~~~~~e~~  185 (402)
T PRK11902        165 LLMAGLMLAGAL-TTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHH-HHHhcCCCc
Confidence            887777665543 345567653

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.64  E-value=6.9e-15  Score=115.29  Aligned_cols=166  Identities=13%  Similarity=0.038  Sum_probs=107.5

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH--
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW--   79 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--   79 (204)
                      .++.+.+.+...++.|.++++ +|+++.+.+...+..... ..+++++.|+++||+|||+.+.++..+..+.......  
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~-~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   97 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLF-ALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            455666667788888888877 899999999988888877 8999999999999999999987765554433322111  


Q ss_pred             -HH---HHHHHHHHHHHHhcccccccchhhcccccC--CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHH
Q 041627           80 -AF---ISVIGLALYITFFAPGMGPVPWTVNSEVYR--EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLIL  153 (204)
Q Consensus        80 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  153 (204)
                       ..   ..........+...+...........++.+  .++|++.+|.......+|..+++.+.+.+.+ .+|+..|+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~  176 (420)
T PRK09528         98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLG  176 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHH
Confidence             11   011111111122222222111122222222  3456778888888889999999999988765 4888888877


Q ss_pred             HHHHHHHHHHHHhhccC
Q 041627          154 AGIAVLAVVFVILFVPE  170 (204)
Q Consensus       154 ~~~~~i~~~~~~~~~~e  170 (204)
                      +...++..+..++..+|
T Consensus       177 ~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        177 SGSALILLVLLFFAKPD  193 (420)
T ss_pred             HHHHHHHHHHHhccccc
Confidence            76666655444444444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.64  E-value=1.9e-14  Score=113.25  Aligned_cols=141  Identities=15%  Similarity=0.160  Sum_probs=95.6

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHH-HHHH-H-
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL-LSWA-F-   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~~~-~-   81 (204)
                      +..+++....|.|.+.++ .|++..+.+......... ..++.++.|+++||+|||+.+..+.....+.... .... . 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVS-NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            455667888999999887 799888755544444444 7899999999999999999877654443322211 1111 1 


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhCcc
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLVGTG  147 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  147 (204)
                         ........+.+.+.+...+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+..|+.
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence               11112122223333344455567889999999999999997665554 5788999999999988864

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=1.8e-15  Score=112.86  Aligned_cols=111  Identities=21%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-H-HHHHHHHHHHHhcccccccchhhcc
Q 041627           30 QLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-I-SVIGLALYITFFAPGMGPVPWTVNS  107 (204)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  107 (204)
                      ..+.+-+.+... +++.++.+|.++||+|||++++++++...+...+.+.+. . .+++.|++.|.+. +..++..++++
T Consensus        69 yaGflGSsF~il-Q~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAiis  146 (451)
T KOG2615|consen   69 YAGFLGSSFSIL-QFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAIIS  146 (451)
T ss_pred             hhhhHhhHHHHH-HHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHH
Confidence            334455555555 999999999999999999999999998888777776665 3 3333366655554 45566779999


Q ss_pred             cccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627          108 EVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD  142 (204)
Q Consensus       108 e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (204)
                      |+.++++|+.+++.......+|.++||.+++++..
T Consensus       147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999999999999999877

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.63  E-value=6.7e-15  Score=115.85  Aligned_cols=164  Identities=14%  Similarity=0.200  Sum_probs=108.4

Q ss_pred             hhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhH-HHhhHHHHHHHHH---HHH
Q 041627            7 FTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLA-LSSLAGVIISLVL---LSW   79 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~-~~~~~~~~~~~~~---~~~   79 (204)
                      ....+.+..|.|.+++ +.|++..+.+...+....+ ..++.++.|+++||+  ++|+.. ........+....   ...
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~-~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELG-GFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF  334 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence            3444567778999985 5799988877766666666 899999999999998  333322 2211111111111   111


Q ss_pred             HH-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHH
Q 041627           80 AF-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAV  158 (204)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (204)
                      .. .......+..+.+..+..........|.+|+++|+++.|+.+....+|+.++|.+.+.+.+..||+..|...+++.+
T Consensus       335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~  414 (434)
T PRK11663        335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG  414 (434)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence            11 11112222223222222223345678999999999999999999999999999999999999999988888888777


Q ss_pred             HHHHHHHhhccCC
Q 041627          159 LAVVFVILFVPET  171 (204)
Q Consensus       159 i~~~~~~~~~~e~  171 (204)
                      +..+..++..+++
T Consensus       415 ~~~~~~~~~~~~~  427 (434)
T PRK11663        415 ISALLLLPFLNAQ  427 (434)
T ss_pred             HHHHHHHHHHhhh
Confidence            7766555544444

>PTZ00207 hypothetical protein; Provisional

Probab=99.63  E-value=2.3e-14  Score=115.13  Aligned_cols=159  Identities=12%  Similarity=0.117  Sum_probs=121.4

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-------H
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-------F   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-------~   81 (204)
                      ..|.+..+.|.+.+++|++..+.+++.+... . .....++.|++.||+|||+++.++.++..++.+.....       .
T Consensus        42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         42 FMYAFNLISGAMQARYNLTQRDLSTITTVGI-A-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            3478888999999999999999888776533 3 34567788999999999999999999999998887775       1


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       +.+.+.+.+.+.+.+...+.....+.+++| ++||++.|+......+|+.+.+.+...+.. .+|+..+++.+.+..+.
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence             455566667777666666667778889997 789999999999999999865555554443 35667777777777776


Q ss_pred             HHHHHhhccCC
Q 041627          161 VVFVILFVPET  171 (204)
Q Consensus       161 ~~~~~~~~~e~  171 (204)
                      .++...++++.
T Consensus       198 ~ll~~~~vr~p  208 (591)
T PTZ00207        198 GILAIVFMRLP  208 (591)
T ss_pred             HHHHHhheeCC
Confidence            66655555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=8.7e-15  Score=109.10  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCcch
Q 041627           38 VVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYR  115 (204)
Q Consensus        38 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  115 (204)
                      ......++|.++.+++.||+|||+.+....++++++.+......  ....+..+....+..+.+.+.++|..|++|+..|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            33444899999999999999999999999999998888776654  3444445555666777788899999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcC
Q 041627          116 GICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLT  175 (204)
Q Consensus       116 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~  175 (204)
                      +++.|.....+++|+++.|.+.  +........+..+++.+++++.+...++--||+++.
T Consensus       469 atgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            9999999999999999999988  444455556777888888888777666666888764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.63  E-value=5.2e-15  Score=117.10  Aligned_cols=154  Identities=14%  Similarity=0.042  Sum_probs=111.1

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhHHHhh--HHHHHHHHHHHHHH--
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLALSSL--AGVIISLVLLSWAF--   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~--~~~~~~~~~~~~~~--   81 (204)
                      .+.+....++|.+.++.|++..+.+...+....+ ..++.++.|+++||.  ++|+......  ....++.+......  
T Consensus       255 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  333 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFV-DIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDY  333 (455)
T ss_pred             HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            3445566788889889999998878877776666 788999999999973  3443333322  22222222222222  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAVLA  160 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~  160 (204)
                      +.+....++.+...+...+....++.|.+|+++|+++.|+.+....+++.++|.+.+.+.+..+ |+..|++.+++.+++
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~  413 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA  413 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence            3444556666666666667778889999999999999999999999999999999999888774 888888777666555


Q ss_pred             HH
Q 041627          161 VV  162 (204)
Q Consensus       161 ~~  162 (204)
                      .+
T Consensus       414 ~~  415 (455)
T TIGR00892       414 GL  415 (455)
T ss_pred             HH
Confidence            43

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.62  E-value=3e-14  Score=112.75  Aligned_cols=165  Identities=16%  Similarity=0.202  Sum_probs=105.6

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhHH-HhhHHHHHHHHHHHHHH
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLAL-SSLAGVIISLVLLSWAF   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~-~~~~~~~~~~~~~~~~~   81 (204)
                      .....+....|.|.++++ .|++..+.+......... ..++.++.|+++||+  |||+... ....+..+.........
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~-~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~  343 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA-GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP  343 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            344456778899999987 688887766666555555 788999999999999  5554322 22222222222221111


Q ss_pred             ----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHH-HHHHHHHHHHhhCcchhhhHHHHH
Q 041627           82 ----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLI-VAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                          ..........+....+.......+..|.+|++.||++.|+.+....+++.+ +|.+.+.+.+..||+..|++..+.
T Consensus       344 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~  423 (452)
T PRK11273        344 AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  423 (452)
T ss_pred             ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence                111122222222222222223356779999999999999999988888765 789999999999999898887777


Q ss_pred             HHHHHHHHHh-hccCC
Q 041627          157 AVLAVVFVIL-FVPET  171 (204)
Q Consensus       157 ~~i~~~~~~~-~~~e~  171 (204)
                      ++++.+.... ..+|+
T Consensus       424 ~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        424 SILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHHHHHHHHHhcccc
Confidence            7766554443 33444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.62  E-value=2.4e-14  Score=110.97  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHH-HHHHHH-HHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLV-LLSWA   80 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~~~~~-~~~~~   80 (204)
                      ++..+.++....+++|.+.+++|.+..+.+...+..... ..+++++.|.++||+|||......... ..+... .....
T Consensus        13 ~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~-~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~   91 (382)
T TIGR00902        13 FFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIA-RFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA   91 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666677788999999999999999999988888887 899999999999999985433222111 111111 11122


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                      .  +.+...+.+.+.+.....+....+..|.  +++|++++|.....+.+|..++|.+.+.+.+.+||+..|......
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            2  4455556656666666667776776553  577899999999999999999999999999999999988776544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10133 L-fucose transporter; Provisional

Probab=99.62  E-value=2.3e-14  Score=112.83  Aligned_cols=136  Identities=13%  Similarity=-0.022  Sum_probs=110.6

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH---HH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS---WA   80 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~   80 (204)
                      +.............|.+.+++|.++.+.++..+....+ ..+++++.|+++||+|||+++..+..+..++.+++.   ..
T Consensus        36 ~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g-~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a  114 (438)
T PRK10133         36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFG-YFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344456677888999889999999988888888777 899999999999999999999999999888887653   22


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV  140 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  140 (204)
                      +  ..+...+++.+.+.+...+....++.|..|+++|....+..+....+|..+++.+.+.+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  55667778888888888888888888887777777778899999889999988887654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.61  E-value=1.9e-18  Score=136.37  Aligned_cols=177  Identities=37%  Similarity=0.705  Sum_probs=134.0

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH--HH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS--WA   80 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~~   80 (204)
                      .+++..+++....|.|.+.++.+.++.   ...+........++.++..++.||+|||+.++.+...+.++...+.  ..
T Consensus       262 ~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~  338 (451)
T PF00083_consen  262 FFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFF  338 (451)
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345567777888899999988888777   2233333344677888888999999999999888887777766654  11


Q ss_pred             H---H-------HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627           81 F---I-------SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTF  150 (204)
Q Consensus        81 ~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  150 (204)
                      .   .       ...........+..+..+..+.+.+|.+|++.|+++.++....+++++.+++.+.+.+.+..+....+
T Consensus       339 ~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~  418 (451)
T PF00083_consen  339 LGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVF  418 (451)
T ss_pred             cccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1   1       11122222234444667888899999999999999999999999999999999988887777744677


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCcCHHHHHHH
Q 041627          151 LILAGIAVLAVVFVILFVPETQGLTFLEVEQR  182 (204)
Q Consensus       151 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~  182 (204)
                      .+.++++.+..++.++++|||++++.+|.++.
T Consensus       419 ~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  419 LIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             hhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            77788888887888889999999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.61  E-value=2.7e-14  Score=112.09  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=100.5

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---HHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~   87 (204)
                      +.+..+.|.+.++.|.++.+.+...+....+ ..++.++.|++.||+|||+.+..+..+..+.........   ......
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (426)
T PRK12307        248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFG-TVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGA  326 (426)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            3466788999999999888877766666555 899999999999999999988877766555444333222   111111


Q ss_pred             -HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 041627           88 -ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGS  148 (204)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  148 (204)
                       .+..+....+..+..+.++.|.+|+++|+++.|+......+++.++|.+.+.+.+..++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence             1111222233445566788999999999999999999999999999999999988887543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.61  E-value=8.5e-16  Score=117.15  Aligned_cols=178  Identities=22%  Similarity=0.358  Sum_probs=137.3

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhh--------hHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLAL--------LPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV   75 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   75 (204)
                      |..-.+.|....+...++++.|+.+.....        ...+......++|..+...++|++|||+..+.+..++.+..+
T Consensus       314 FllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~  393 (538)
T KOG0252|consen  314 FLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFF  393 (538)
T ss_pred             HhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHH
Confidence            334456788888999999988876654332        122223332455777888999999999999999999888877


Q ss_pred             HHHHHH-------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-----h
Q 041627           76 LLSWAF-------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD-----L  143 (204)
Q Consensus        76 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~  143 (204)
                      .+....       ...+...+...+...+.......+.+|.+|++.|+++.|+....+..|++++...+..+.+     .
T Consensus       394 ~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~  473 (538)
T KOG0252|consen  394 VIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPN  473 (538)
T ss_pred             HHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcc
Confidence            765432       2234444555667778888889999999999999999999999999999999999999888     6


Q ss_pred             hCcchhhhHHHHHHHHHHHHHHhhccCCCCcCHHHHHHH
Q 041627          144 VGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVEQR  182 (204)
Q Consensus       144 ~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~  182 (204)
                      .+.+..+++.+.++.+.. +..+++|||++++.|+.+++
T Consensus       474 ~g~~~v~~i~~~~~~~gi-~~T~l~pEtk~~~leei~~e  511 (538)
T KOG0252|consen  474 IGVRNVFIILAGCMLLGI-LFTLLIPETKGKSLEEISNE  511 (538)
T ss_pred             ccchHHHHHHHHHHHHhH-heeEEeecccccCHHHhcCh
Confidence            788889999888887775 44566799999998887544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=3.1e-14  Score=108.30  Aligned_cols=159  Identities=28%  Similarity=0.347  Sum_probs=132.5

Q ss_pred             hhhhhhhhhHHhhhHHHHHHc-CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchH-hHHHhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMA-GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +......+....+.|.+.++. |.++.+.+......... ..++.++.+++.||+|||+ .+..+..+..++........
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG-GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            445566778888999998875 88888877777666666 8999999999999999999 88888888777777666544


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                        ........+.+.+.+...+....+..|..|+++|++..++.+...+++..+++.+.+.+.+..+|+..+.+.+++.++
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence              455556677777778888889999999999999999999999999999999999999999888999888888877776


Q ss_pred             HHHH
Q 041627          160 AVVF  163 (204)
Q Consensus       160 ~~~~  163 (204)
                      ..+.
T Consensus       344 ~~i~  347 (352)
T cd06174         344 AALL  347 (352)
T ss_pred             HHHH
Confidence            6544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.61  E-value=7.3e-14  Score=110.13  Aligned_cols=165  Identities=12%  Similarity=0.085  Sum_probs=108.3

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--F   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~   81 (204)
                      +...+.|....|.|.+.++ +|.++............. ..++.++.|+++||+|||+.+..+.++..++.......  .
T Consensus       261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~-~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~  339 (438)
T PRK09952        261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGL-SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445667778889988754 788776533333333333 67888999999999999998887766554443322221  1


Q ss_pred             ---HHH-HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHH-HHHHHHHHHHHHHHHhh--CcchhhhHHH
Q 041627           82 ---ISV-IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNW-ISNLIVAQNFLTVADLV--GTGSTFLILA  154 (204)
Q Consensus        82 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~--~~~~~~~~~~  154 (204)
                         ... ....++.+...+...+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..  +|...+....
T Consensus       340 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~  419 (438)
T PRK09952        340 QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL  419 (438)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence               112 2222333344444456677899999999999999999776654 78899999999988755  3666666555


Q ss_pred             HHHHHHHHHHHhhccCC
Q 041627          155 GIAVLAVVFVILFVPET  171 (204)
Q Consensus       155 ~~~~i~~~~~~~~~~e~  171 (204)
                      +..+++.+.. +.++|+
T Consensus       420 ~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        420 AGCLISAMTA-LLMKDN  435 (438)
T ss_pred             HHHHHHHHHH-HHcccc
Confidence            5555554443 445664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.61  E-value=3.5e-14  Score=110.52  Aligned_cols=160  Identities=23%  Similarity=0.120  Sum_probs=114.8

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .++.....+.|.+.++.|.+.  .+...+....+ ..++.++.|++.||+|||+.+..+..+..++........  ....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T PRK05122        230 IGFGTIATFITLYYAARGWDG--AALALTLFGVA-FVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMAL  306 (399)
T ss_pred             HHHHHHHHHHHHHHHHccccc--chHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            344556678888887777643  24444444444 688999999999999999988877776666655544433  3333


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ....+.+.+.+...+.......|..|+++|+++.++.+....++..+++.+.+.+.+..||+..++..+.+.+++.+...
T Consensus       307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555566778899999999999999999999999999999999999998888887777766655444


Q ss_pred             hhccCC
Q 041627          166 LFVPET  171 (204)
Q Consensus       166 ~~~~e~  171 (204)
                      + .+++
T Consensus       387 ~-~~~~  391 (399)
T PRK05122        387 L-LYRR  391 (399)
T ss_pred             H-hccc
Confidence            3 3443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.61  E-value=2.1e-14  Score=111.79  Aligned_cols=165  Identities=14%  Similarity=0.136  Sum_probs=113.1

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH--
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW--   79 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--   79 (204)
                      .++.+.+...+.+++|.+.++ +|.++.+.+...+..... ..+++++.|+++||+|||+.++.+.....+.......  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~-~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   89 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLF-SILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV   89 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777888899888765 899999989888888777 8999999999999999999988766555443332211  


Q ss_pred             -HH-------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhh
Q 041627           80 -AF-------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFL  151 (204)
Q Consensus        80 -~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  151 (204)
                       ..       ....+.++..+.......+....+..|..+  +++...|.....+++|..+++.+.+.+. ..+|+..|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~  166 (396)
T TIGR00882        90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFW  166 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHH
Confidence             11       112222344444445555555555555433  3445677788888899999999988765 458999998


Q ss_pred             HHHHHHHHHHHHHHhhccCC
Q 041627          152 ILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       152 ~~~~~~~i~~~~~~~~~~e~  171 (204)
                      +.+.+.++..+..+...||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       167 LGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            87777766655444444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.60  E-value=3.6e-14  Score=109.98  Aligned_cols=162  Identities=12%  Similarity=0.077  Sum_probs=115.6

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchH----hHHHhhHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKK----LALSSLAGVIISLVLLS   78 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~----~~~~~~~~~~~~~~~~~   78 (204)
                      ++..+.+...+.+++|.+.++.|.+..+.+...+..... ..+++++.|+++||+|||.    .+.+.....   .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~-~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVA-RFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHH-HHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHH
Confidence            345556677788899999999999999999998888777 8999999999999999943    222221111   11111


Q ss_pred             HH-H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           79 WA-F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        79 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                      .. .  +.+...+.+.+.+.+...+...++..++  .++|+++.+.....+.+|..++|.+.+.+.+.+||+..|+..+.
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            11 1  4455566666766666677666666665  45678889999999999999999999999999999998887665


Q ss_pred             HHHHHHHHHHhhccCC
Q 041627          156 IAVLAVVFVILFVPET  171 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~  171 (204)
                      ...+.. +..+..||.
T Consensus       167 ~~~~~~-~~~~~~~~~  181 (382)
T PRK11128        167 GVASML-LGQLLRPTI  181 (382)
T ss_pred             HHHHHH-HHHHccCCC
Confidence            444333 333344554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.60  E-value=8.6e-15  Score=119.74  Aligned_cols=160  Identities=16%  Similarity=0.079  Sum_probs=128.9

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--------
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--------   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------   81 (204)
                      .......+|++.++++++..+.+++.+....+ ..++.++.+++.||.|||+.+.++.+++.++.++.+...        
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~-~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIG-NLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHH-HHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            34555666788888999999989988888887 899999999999999999999999999988888765431        


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHhcccccccchhhcccccCCcchh
Q 041627           82 ---------------------------------------------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  116 (204)
Q Consensus        82 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  116 (204)
                                                                   ..+++.+++.|.+.+...+....++.|++|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                         23456788888888888899999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhh----------------------CcchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          117 ICGGMSATVNWISNLIVAQNFLTVADLV----------------------GTGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      +..++......+|..+++.+.+.+.+.+                      +|+..|++.+++.++..+. +++.|++
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~  283 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccc
Confidence            9999999999999999999998877543                      1555677766666655443 3455654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=9.6e-14  Score=107.98  Aligned_cols=159  Identities=9%  Similarity=0.107  Sum_probs=108.3

Q ss_pred             hhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            9 GINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         9 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      ..+.+..+.|.+.+ ++|.++.+.+...+..... ..++.++.|+++||+|||+.+..+.....+.........  ....
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~-~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  309 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGL-EIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILL  309 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            33445567888775 4788888877766655444 688999999999999999987766554444333222222  2223


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ....+.+...+...+....+..|.+|+ +|+++.++.+...++|+.+++.+.+.+.+..+|+..+++...+.++..+. .
T Consensus       310 ~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~-~  387 (393)
T PRK15011        310 GLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC-L  387 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-H
Confidence            333333333333334455677898885 58999999999899999999999999999889988887766666555443 4


Q ss_pred             hhccC
Q 041627          166 LFVPE  170 (204)
Q Consensus       166 ~~~~e  170 (204)
                      ++.||
T Consensus       388 ~~~~~  392 (393)
T PRK15011        388 LRIKD  392 (393)
T ss_pred             HhhcC
Confidence            44554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.58  E-value=7e-14  Score=111.62  Aligned_cols=165  Identities=17%  Similarity=0.218  Sum_probs=123.2

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-----cchHh-HHHhhHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-----GRKKL-ALSSLAGVIISLVLL   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~   77 (204)
                      +.+..........+|.+.++.|.+.++.+.. +.....  .++.+++|+++||+     |||+. +..+.+...++...+
T Consensus        22 ~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~   98 (491)
T PRK11010         22 FASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence            3455566677778899999999998887765 333232  36899999999999     99986 445555555555555


Q ss_pred             HHHH-----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhh
Q 041627           78 SWAF-----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD-LVGTGSTFL  151 (204)
Q Consensus        78 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~  151 (204)
                      .+..     ..+...+.+.+.+.....+...++..|++|+++|+++.++......+|..+++.+...+.+ ..||+..|+
T Consensus        99 a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010         99 GFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            4431     3445456666666666667788999999999999999999999999999999999988888 469999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCC
Q 041627          152 ILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       152 ~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      +.+...++..+.. ++.||++
T Consensus       179 i~a~l~ll~~l~~-~~~~e~~  198 (491)
T PRK11010        179 LMAALLIPCIIAT-LLAPEPT  198 (491)
T ss_pred             HHHHHHHHHHHHH-HhcCCCc
Confidence            8887766664433 3467764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=6.6e-14  Score=109.77  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=111.5

Q ss_pred             HhhhHHHHHHc----CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           14 MYYSPTIVQMA----GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        14 ~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      ..+.|.+..+.    +.+..+.+...+..... ..++.++.|++.||+|||+.+..+..+..+......+..  +.+...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  321 (420)
T PRK09528        243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFL-EALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSIL  321 (420)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            33456555442    44555556666666655 789999999999999999998887777776666555443  333444


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM-SATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL  166 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  166 (204)
                      ..+.+.......+....++.|.+|++.|++..+. .+....+|+.+++.+.+.+.+..||+..|...+.+.++..++..+
T Consensus       322 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        322 KLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            4444444433344455788899999999988766 566778999999999999999999999998888777766655555


Q ss_pred             hccCC
Q 041627          167 FVPET  171 (204)
Q Consensus       167 ~~~e~  171 (204)
                      ..++.
T Consensus       402 ~~~~~  406 (420)
T PRK09528        402 TLSGD  406 (420)
T ss_pred             HhcCC
Confidence            55543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=7.2e-14  Score=112.19  Aligned_cols=139  Identities=22%  Similarity=0.182  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccchhhcccc
Q 041627           32 ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEV  109 (204)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~  109 (204)
                      +++.+....+ ..+++++.|+++|++|||+.++.+.+...++.++...+.  ..+...|++.+.+.++...+.+.|.+|+
T Consensus        92 s~~~s~~~lg-a~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEi  170 (513)
T KOG0254|consen   92 GLLTSILNLG-ALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEI  170 (513)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhc
Confidence            6777777777 899999999999999999999999999999999988876  7788889999999999999999999999


Q ss_pred             cCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--hCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADL--VGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       110 ~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      .|++.||...+.......+|..++ .+.+...+.  .+||..+.+..+.+++..+. .++.||+++
T Consensus       171 ap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  171 APAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             CChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            999999999998888888666665 555555544  37987777767666666555 778898854

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.57  E-value=2.3e-13  Score=107.14  Aligned_cols=155  Identities=16%  Similarity=0.080  Sum_probs=96.3

Q ss_pred             hhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH-HH---
Q 041627            7 FTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW-AF---   81 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~---   81 (204)
                      ...++.+..|+|.++++ +|.+..+.+...+..... ..++.++.|+++||+|||+.+.....+..+....... ..   
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~-~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  334 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFV-FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS  334 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45567788999998865 788887766666666666 6788889999999999999877655543333222111 11   


Q ss_pred             -HHH-HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhC-cchhhhHHHHHH
Q 041627           82 -ISV-IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLVG-TGSTFLILAGIA  157 (204)
Q Consensus        82 -~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  157 (204)
                       ... .....+.....+...+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+. .+..| |...++..+...
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~  413 (432)
T PRK10406        335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMA  413 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHH
Confidence             111 11111111222222345667889999999999999999987765 24446666664 45556 433444444444


Q ss_pred             HHHHHH
Q 041627          158 VLAVVF  163 (204)
Q Consensus       158 ~i~~~~  163 (204)
                      ++..+.
T Consensus       414 ~i~~~~  419 (432)
T PRK10406        414 VVAFLV  419 (432)
T ss_pred             HHHHHH
Confidence            444333

>TIGR00897 2A0118 polyol permease family

Probab=99.57  E-value=2e-13  Score=106.52  Aligned_cols=159  Identities=15%  Similarity=0.159  Sum_probs=111.0

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHH-HhhHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWA--   80 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~--   80 (204)
                      +++..+.++...|.|.+.++.|++..+.+......... ..++.+..|+++||+|||+.+. .+.....+........  
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~-~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFT-NIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678888999999999999988866666666555 8999999999999999988753 2222222222222111  


Q ss_pred             -----HHHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           81 -----FISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                           ........+..+.+.....+. .....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+++.++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~  388 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA  388 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence                 122233344444444443333 345567654 6899999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHHH
Q 041627          156 IAVLAVVFVI  165 (204)
Q Consensus       156 ~~~i~~~~~~  165 (204)
                      +.++..+...
T Consensus       389 ~~~i~~~~~~  398 (402)
T TIGR00897       389 LYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHH
Confidence            7666654433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.57  E-value=2.4e-13  Score=105.28  Aligned_cols=151  Identities=12%  Similarity=0.107  Sum_probs=112.0

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLAL   89 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
                      ......++|.+.++.|.++.+.+.+.+..... ..++.++.|++.||+|||+.+..+.....++...... .........
T Consensus       216 ~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  293 (381)
T PRK03633        216 LGSLYGLMPLYLNHQGMSDASIGFWMALLVSA-GILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS-QAAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence            34456678999998999988877777766655 7999999999999999999887776666555443321 111222233


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHH
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVV  162 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  162 (204)
                      +.+.......+.......|..|+++++...+..+...++|+.++|.+.+.+.+..++++.|.+.+.+.++..+
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            3344444456777788889999888887888888888899999999999999999998888877776665543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.57  E-value=8.5e-14  Score=108.94  Aligned_cols=140  Identities=19%  Similarity=0.120  Sum_probs=104.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccccccchhhc
Q 041627           32 ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----ISVIGLALYITFFAPGMGPVPWTVN  106 (204)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  106 (204)
                      +...++...+ +++|+++.++++||+|||..+.+..++..++...+..+.     ..+...+++.|...+......+.|+
T Consensus        63 S~~vs~f~iG-~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   63 SLIVSIFFIG-GMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3445566666 899999999999999999999998888888777766654     5677788888888888888999999


Q ss_pred             ccccCCcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHh-hCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          107 SEVYREQYRGICGGMSATVNWISNLIVAQNF-LTVADL-VGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       107 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      .|+.|.+.||....+......+|..++..+. +.+... ..|.+.+....++.++ ..+...++||+++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~-~l~~l~~~PESPk  209 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL-QLALLPFLPESPK  209 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH-HHHHHhcCCCCcc
Confidence            9999999999888888887777777775554 223322 2365555444444433 3556678899865

>PRK12382 putative transporter; Provisional

Probab=99.57  E-value=1.6e-13  Score=106.56  Aligned_cols=157  Identities=20%  Similarity=0.105  Sum_probs=115.9

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      .+......+.|.+.++.|.++.  +......... ..++.++.|++.||+|||+.+..+..+..++........  ....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWAMA--GFTLTAFGGA-FVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVAL  306 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCchh--HHHHHHHHHH-HHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHH
Confidence            4455667788888888776543  3333433333 688999999999999999998887777666655544433  2333


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ....+.+.+.+...+.......|.+|+++|+++.|+.+....+++.++|.+.+.+.+..||+..+.+.+.+.++..+...
T Consensus       307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33444455555555666677889999999999999999999999999999999999999999999888877776665544


Q ss_pred             hh
Q 041627          166 LF  167 (204)
Q Consensus       166 ~~  167 (204)
                      +.
T Consensus       387 ~~  388 (392)
T PRK12382        387 LS  388 (392)
T ss_pred             hh
Confidence            43

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.56  E-value=2.8e-13  Score=118.18  Aligned_cols=126  Identities=10%  Similarity=0.069  Sum_probs=96.8

Q ss_pred             hHHHHHHcCCCchh--hhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH---H--HHHHHHHH
Q 041627           17 SPTIVQMAGFQSNQ--LALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA---F--ISVIGLAL   89 (204)
Q Consensus        17 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~   89 (204)
                      .+.+..+++.+...  .++..++.... ..++++++|+++||+|||++++.+..+.++..+.....   .  +.+++.++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  111 (1146)
T PRK08633         33 QNTLIKAYDGSEQVILTAIVNALFLLP-FLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF  111 (1146)
T ss_pred             HHHHHHHcCcccHHHHHHHHHHHHHHH-HHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            34444455554332  34555555555 78999999999999999999988776655544443322   1  56667778


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                      +.+.+.+...+...+++.|++|+++|++++|+......+|..+++.+.+.+...
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888899999999999999999999999999999999999988776

>PRK03699 putative transporter; Provisional

Probab=99.56  E-value=9.9e-14  Score=107.94  Aligned_cols=158  Identities=13%  Similarity=0.111  Sum_probs=115.9

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +...+.+.+..|.|.+.++ +|++..+.+...+....+ ..++.++.|+++||++||+.+.....+..+.........  
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~-~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~  294 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMA-YMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHH-HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc
Confidence            3444566788899999964 799988878777777666 799999999999999999988776665555444433322  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      .......+..+.+.+...+....+..|..| +++++..+.......+|+.++|.+.+.+.+..|++..++...++..++.
T Consensus       295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (394)
T PRK03699        295 SHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF  373 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence            233333444555555555666666777665 4467788888888899999999999999999999888888777766665


Q ss_pred             HHH
Q 041627          162 VFV  164 (204)
Q Consensus       162 ~~~  164 (204)
                      +.+
T Consensus       374 ~~~  376 (394)
T PRK03699        374 VMC  376 (394)
T ss_pred             HHH
Confidence            443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=3.1e-14  Score=107.83  Aligned_cols=163  Identities=19%  Similarity=0.201  Sum_probs=123.9

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhHHHhhHH-HHHHHHHHHHH
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAG-VIISLVLLSWA   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~~~-~~~~~~~~~~~   80 (204)
                      ..+..=+++..|.|.|+.+ .|++..+.++..+.+-.+ +++|++++|+++||+  |||....+.+.+ ..++.......
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~a-gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~  341 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVA-GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA  341 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence            3444557889999999876 799999989999999999 899999999999996  777765544333 33333333333


Q ss_pred             H----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           81 F----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        81 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                      +    .......+..|+...+..-..-....|..|++.-|++.|+...++.+ |...+....+++.+.+||...|.+..+
T Consensus       342 ~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~  421 (448)
T COG2271         342 PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSI  421 (448)
T ss_pred             CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHH
Confidence            3    33444455556666666666667889999999999999999999999 888888888888888999999988887


Q ss_pred             HHHHHHHHHHhhc
Q 041627          156 IAVLAVVFVILFV  168 (204)
Q Consensus       156 ~~~i~~~~~~~~~  168 (204)
                      ..+++.+......
T Consensus       422 ~a~l~~lll~~~~  434 (448)
T COG2271         422 AALLAILLLLPVW  434 (448)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.55  E-value=1.1e-13  Score=109.20  Aligned_cols=167  Identities=14%  Similarity=0.165  Sum_probs=109.5

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHH---HHHHHHHH
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII---SLVLLSWA   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~---~~~~~~~~   80 (204)
                      +.....+++..|.|.+.++ .|.++.+.++........ +.++.++.|+++||+++++....+.....+   +.......
T Consensus       262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~-~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
T TIGR00712       262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA-GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN  340 (438)
T ss_pred             HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc
Confidence            3445557788899999987 688888767666666555 899999999999999654322222222111   11111111


Q ss_pred             H----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           81 F----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISN-LIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        81 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                      .    .......+..+....+..........|.+|+++|+++.|+.+....+++ .++|.+.+.+.+..||...+++..+
T Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~  420 (438)
T TIGR00712       341 PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  420 (438)
T ss_pred             CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHH
Confidence            0    1111112222222222112223457799999999999999998888875 6799999999999999888888887


Q ss_pred             HHHHHHHHHHhhccCCC
Q 041627          156 IAVLAVVFVILFVPETQ  172 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~~  172 (204)
                      +.+++.+...+..||.|
T Consensus       421 ~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       421 GSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            77777777777777754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.54  E-value=8.3e-14  Score=111.64  Aligned_cols=134  Identities=22%  Similarity=0.302  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccccchhhcccccCCcch
Q 041627           40 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYR  115 (204)
Q Consensus        40 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  115 (204)
                      ....+++.++.+++.||+|||+.+..+.++.+++.+......    ........+.+.+.....+..+.+.+|.+|++.|
T Consensus       365 ~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  444 (505)
T TIGR00898       365 GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR  444 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            344788999999999999999999888887777766555443    2223333344444455566778999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcCH
Q 041627          116 GICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTF  176 (204)
Q Consensus       116 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~  176 (204)
                      +++.|+.+....+|++++|.+.+ + ...++..++.+.++..+++.+. .+++||+++++.
T Consensus       445 ~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l  502 (505)
T TIGR00898       445 NLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPL  502 (505)
T ss_pred             hhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCC
Confidence            99999999999999999999988 3 4445556777777666666444 456799877554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.53  E-value=5.6e-13  Score=102.73  Aligned_cols=151  Identities=12%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             hhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           11 NTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      .....+.|.+. +++|.++.+.+......... ..++.++.|++.||+|||+.+..+.....+.........  +.....
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGL-EIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLML  294 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667776 45788888877665554444 678889999999999999988776655444433333222  333333


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                      ..+.+.+.+...+....+..|..|+ +|+++.++.+...++|..++|.+.+.+.+..||+..++..+++.+++.+.
T Consensus       295 ~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  369 (375)
T TIGR00899       295 QLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC  369 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            4444554444556666788898876 46699999999999999999999999999999988888877776666544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.9e-14  Score=108.05  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=131.9

Q ss_pred             cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccc
Q 041627           24 AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPV  101 (204)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  101 (204)
                      .+..+.+.+++....... +.+..++.|.+.||+|+|-.++++...+....+++++..  ...++.|.+.+.+.......
T Consensus       101 ~~~e~~~iG~LFaskA~~-qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALV-QLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             ccccccchhHHHHHHHHH-HHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            455667778888888887 999999999999999999999999999999998888766  67788899999999999999


Q ss_pred             chhhcccccCCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          102 PWTVNSEVYREQY-RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       102 ~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      ..+++++.+|+++ |++++|....+..+|-.++|+.++.+.+..|.+.+|.+.++++++...+.++.++.++.
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            9999999999766 79999999999999999999999999999999999999999998887777666655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.53  E-value=2.5e-13  Score=104.91  Aligned_cols=160  Identities=19%  Similarity=0.298  Sum_probs=109.7

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHH-hhHHHHHH----HHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIIS----LVLL   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~----~~~~   77 (204)
                      +......+....+.|.+.++ .|.++.+.+......... ..++.++.|+++||+|||+.... ......++    ....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIV-GFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            34445566777888888765 788887767766666555 79999999999999999962111 11111111    1111


Q ss_pred             -HH--H-HHHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhH
Q 041627           78 -SW--A-FISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLI  152 (204)
Q Consensus        78 -~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  152 (204)
                       ..  . ...........+....+..+....+..|.+|+++|+++.++.+....+++.++|.+.+.+.+..+ |+..+.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~  383 (399)
T TIGR00893       304 FATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV  383 (399)
T ss_pred             HHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence             11  1 12222222333333444677888999999999999999999999999999999999999999888 8878877


Q ss_pred             HHHHHHHHHHHH
Q 041627          153 LAGIAVLAVVFV  164 (204)
Q Consensus       153 ~~~~~~i~~~~~  164 (204)
                      .+.+.+++.+..
T Consensus       384 ~~~~~~~~~~~~  395 (399)
T TIGR00893       384 VAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHH
Confidence            776666655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.52  E-value=1.1e-12  Score=102.04  Aligned_cols=157  Identities=20%  Similarity=0.118  Sum_probs=109.9

Q ss_pred             hhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH-HHHH--HHH
Q 041627            9 GINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL-SWAF--ISV   84 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~~~~--~~~   84 (204)
                      ..+....+.|.+.++ .|.+..+.+......... +.+++++.|+++||+|||+... +..+..++.... ....  ...
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~-~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  297 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGA-GIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHL  297 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-HHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHH
Confidence            334445666666665 688888877776666655 8999999999999999887543 333333332222 2211  333


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      .....+.+.......+.....+.|..| ++|+++.|+......+|..+++.+.|.+.+..|++..++..+.+.+++.+..
T Consensus       298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        298 SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            334444455544444555567777766 6889999999999999999999999999999999999988888877776665


Q ss_pred             Hhhc
Q 041627          165 ILFV  168 (204)
Q Consensus       165 ~~~~  168 (204)
                      ....
T Consensus       377 ~~~~  380 (390)
T PRK03545        377 ILIF  380 (390)
T ss_pred             HHHc
Confidence            5544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.52  E-value=7.4e-13  Score=104.78  Aligned_cols=168  Identities=21%  Similarity=0.263  Sum_probs=131.8

Q ss_pred             hhhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccch--HhHHHhhHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK--KLALSSLAGVIISLVLLSW   79 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~   79 (204)
                      .+.-..+++++......|.+ ++|++..+......+.... +++|++++|++.||+|.|  +++..+.+...+..+...+
T Consensus       290 ~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~-a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  290 YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIV-AIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence            34455677888888888877 6999999866555555555 899999999999999999  7777776666433333222


Q ss_pred             ---------HH-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cch
Q 041627           80 ---------AF-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGS  148 (204)
Q Consensus        80 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  148 (204)
                               .. +.+.+...+.+.+.++.++..-++.+|+.|+++.+..+|+....+...++++|.+.+.+.+..| .|.
T Consensus       369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~  448 (477)
T PF11700_consen  369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY  448 (477)
T ss_pred             HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence                     11 6777788888999999999999999999999999999999999999999999999999999887 677


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCC
Q 041627          149 TFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       149 ~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      .+....++.+++.++. ..+++.+
T Consensus       449 g~~~l~~lf~~gl~ll-~~v~~~~  471 (477)
T PF11700_consen  449 GFLFLLVLFLIGLILL-FFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHHH-hhccchh
Confidence            7777666666665443 4455443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.52  E-value=6.5e-13  Score=115.84  Aligned_cols=136  Identities=12%  Similarity=0.034  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHH--HHHHHHHHHHH-H--HHHHHHHHHHHHhcccccccchhhcccc
Q 041627           35 PSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG--VIISLVLLSWA-F--ISVIGLALYITFFAPGMGPVPWTVNSEV  109 (204)
Q Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~--~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~  109 (204)
                      ......+..++.+++.|+++||+|||+++......  ........... .  +.+++.+++.+.+.+...+...+++.|+
T Consensus        57 ~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~  136 (1140)
T PRK06814         57 AGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDH  136 (1140)
T ss_pred             HHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhh
Confidence            33333444789999999999999999975332211  11111111111 2  6677788888988888899999999999


Q ss_pred             cCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          110 YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       110 ~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      +|+++|++++|+......+|..++|.+.+.+....+|+..|+. ..+..+..++..+++|++
T Consensus       137 ~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        137 LNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL-LMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999999999999999999877733 333333334445556655

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.52  E-value=4.2e-13  Score=103.77  Aligned_cols=148  Identities=15%  Similarity=0.053  Sum_probs=103.4

Q ss_pred             hhhhhhhhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHH-H-HHHH-
Q 041627            5 QQFTGINTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV-L-LSWA-   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~-~~~~-   80 (204)
                      ......+....+.|.+. ++.|.++.+.+......... ..++.++.|+++||+|||+.+.....+..+... . .... 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T TIGR00883       230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLIL-FFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445566778889888 45788888767666665555 899999999999999999987655444333221 1 1111 


Q ss_pred             -H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhC-cchhhhHH
Q 041627           81 -F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSA-TVNWISNLIVAQNFLTVADLVG-TGSTFLIL  153 (204)
Q Consensus        81 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  153 (204)
                       .  ..........+...+...+....+..|.+|+++|+++.++.. ....+++.++|.+.+.+.+..| |+..++..
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence             1  223333444455555666778899999999999999999854 4456788899999999999888 65554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.51  E-value=6.7e-13  Score=103.54  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=111.9

Q ss_pred             hHHhhhHHHHHHcCCCchhh----hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627           12 TVMYYSPTIVQMAGFQSNQL----ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      ....+.|.+.++.+.+..+.    +........+ ..++.+..|+++||+|||+.+..+.....+..+......  +...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVA-ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            44556677777654443332    2222233333 677888899999999999998887776665554444333  3344


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      +...+.+.+.+...+.......+..|+++|++.+++......+|..++|.+.+.+.+..+|+..|++.+++.++..+...
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            44555566666666667777888899999999999999999999999999999999999999999988887777766554


Q ss_pred             hhc
Q 041627          166 LFV  168 (204)
Q Consensus       166 ~~~  168 (204)
                      +..
T Consensus       396 ~~~  398 (408)
T PRK09874        396 NSL  398 (408)
T ss_pred             HHH
Confidence            443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.50  E-value=1.5e-12  Score=101.21  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhH--HHHHHHHHHHHHHHh-hhhhccccchHhHHHhhHHH-HHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLP--SLVVAGTNAVGTIVG-IYLIDHFGRKKLALSSLAGV-IISLVLLS   78 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~grr~~~~~~~~~~-~~~~~~~~   78 (204)
                      ++.|...+....+++|.++++.|.+.++.+.+.  ...... ..+.+++. ++..||+||||.+++...+. ..+.....
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~-~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~   88 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVV-KFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLA   88 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHH
Confidence            466777778888999999999999999988863  334444 77777777 55899999999865554332 21222222


Q ss_pred             H---HH---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627           79 W---AF---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI  152 (204)
Q Consensus        79 ~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  152 (204)
                      .   ..   ............+.....+....+..|..++++++...+.......+|..+++...+.+.+..+|+..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~  168 (390)
T TIGR02718        89 LVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLL  168 (390)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            1   11   22222233333344444455666778888888888877777777788889999888889999999999998


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 041627          153 LAGIAVLAVVFVILFVPE  170 (204)
Q Consensus       153 ~~~~~~i~~~~~~~~~~e  170 (204)
                      .+.+.++..+...+..||
T Consensus       169 ~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       169 VACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            888777665554444344

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.50  E-value=6.5e-13  Score=103.24  Aligned_cols=138  Identities=15%  Similarity=0.119  Sum_probs=102.5

Q ss_pred             hHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---HHHHHH
Q 041627           12 TVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---ISVIGL   87 (204)
Q Consensus        12 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~   87 (204)
                      ....+.|.+.+ +.|.+..+.+...+....+ ..++.++.|++.||+|||+.+..+.....+.........   ......
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~-~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIG-AIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLG  334 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            44456677765 5799988878777776666 899999999999999999988777655433222221111   222333


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhh
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTF  150 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~  150 (204)
                      ..+.+....+..+..+.++.|.+|+++|+++.|+.+....+++.++|.+.+.+.+..| |...+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       335 LFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL  398 (405)
T ss_pred             HHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            3444555556667777889999999999999999999999999999999999999988 65443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.50  E-value=3.8e-13  Score=105.27  Aligned_cols=152  Identities=15%  Similarity=0.086  Sum_probs=100.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHc--CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhH-HHhhHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMA--GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA-LSSLAGVIISLVLLSW   79 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~   79 (204)
                      +++...+++.+..|+|.++++.  |.++.+.+......... ..++.++.|+++||++||+.. ........+.......
T Consensus       251 ~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~-~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~  329 (412)
T TIGR02332       251 YFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFC-TIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASA  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHH-HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHh
Confidence            3455667788899999999985  55666656655555555 899999999999999977753 3333333322211111


Q ss_pred             HH-HHH-HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHH
Q 041627           80 AF-ISV-IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAG  155 (204)
Q Consensus        80 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~  155 (204)
                      .. ... .....+...+.....+..+....|.+|+++|++++|+.+...++|+.++|.+.+.+.+..| |...+++.++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       330 TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            11 111 1111111111112223345566788999999999999999999999999999999988875 7777665444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.50  E-value=9.7e-13  Score=103.76  Aligned_cols=164  Identities=15%  Similarity=0.064  Sum_probs=115.1

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc----cccchHhHHHh-hHHHHHHHHHHHHHH-
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLID----HFGRKKLALSS-LAGVIISLVLLSWAF-   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~-~~~~~~~~~~~~~~~-   81 (204)
                      .++.....+++.|.+++|.+....+....+.... ..+.+++.|+++|    |+|||+.++.. .....++...+.+.. 
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~-~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLS-GLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            3455667788889999999998888877777776 8999999999999    59999998775 444444444443321 


Q ss_pred             -H----------------HH-HHHHHHHHHhcccccccchhhcccccCCcch--hhhhhHHHHHHHHHHHHHHHHHHHH-
Q 041627           82 -I----------------SV-IGLALYITFFAPGMGPVPWTVNSEVYREQYR--GICGGMSATVNWISNLIVAQNFLTV-  140 (204)
Q Consensus        82 -~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~-  140 (204)
                       .                .. +....+.........+...++++|.+|+++|  +.+.++.....++|+.+++.+.+.. 
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~  176 (477)
T TIGR01301        97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG  176 (477)
T ss_pred             hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0                11 1111222334444556677999999998866  5788888888899999988888754 


Q ss_pred             -HHhh-------------CcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          141 -ADLV-------------GTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       141 -~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                       .+.+             +.+..|++.+++.+++.++..+..||.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence             2211             3456777777777777777777788864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.50  E-value=1.9e-13  Score=109.60  Aligned_cols=149  Identities=18%  Similarity=0.101  Sum_probs=107.0

Q ss_pred             HhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHH
Q 041627           14 MYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYI   91 (204)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   91 (204)
                      ..-++.+.++.|-++.. .++.+..... ..+++++.|.++|.+|||..++.+.++.+++.++.+...  ..++....+.
T Consensus        64 a~~l~~I~~diG~~~~~-~w~~~~~~l~-~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   64 ASILPYINADIGGSDNW-SWFSTAWTLA-SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHHhcCCCccc-hHHHHHHHHH-HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            34457777888877654 6666655555 899999999999999999999999999999998877665  4444445555


Q ss_pred             HHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627           92 TFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        92 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      +.+. +........++|..|.+.|..+.++...........++.+...+....+|||.|++..+...+.++...
T Consensus       142 Gvga-G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  142 GVGA-GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHhh-HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            5543 333445566899999999987776665544344445566665555566899999998887777655433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.49  E-value=6.4e-13  Score=104.61  Aligned_cols=163  Identities=17%  Similarity=0.115  Sum_probs=111.2

Q ss_pred             hhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHh-HHHhhHHHHHHHHHHHHHH-
Q 041627            9 GINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKL-ALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ....+..|++.+.+ ++|.++.+.+...++.... .++..++.|+++||    +||||. ++.+.....++.+.+...+ 
T Consensus        14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~-~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~   92 (437)
T TIGR00792        14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARIL-DAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD   92 (437)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence            34455556665555 5899999988888888777 89999999999998    677554 5566666666555554322 


Q ss_pred             -------HHHHHHHHHHHHhcccccccchhhccccc-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------hhCc
Q 041627           82 -------ISVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICGGMSATVNWISNLIVAQNFLTVAD-------LVGT  146 (204)
Q Consensus        82 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~  146 (204)
                             ........+.+.+.........++..|.. ++++|++..++......+|+.+++.+.+.+..       ..+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~  172 (437)
T TIGR00792        93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW  172 (437)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence                   12223333344444444555567788887 56889999999888888888777766555443       3468


Q ss_pred             chhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          147 GSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       147 ~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      +..+.+.+++..+..+...+..||++
T Consensus       173 ~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       173 FMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            77787777777766666666667754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.9e-13  Score=106.24  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=124.8

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccc
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGP  100 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  100 (204)
                      +.+....+.+...+++..+ .+++.++++.+.||++-.+.+....+...+..+......  ..+++.+++.|.+.++.+|
T Consensus        75 dl~~~~~~l~~~~t~F~v~-Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVG-YIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             ccchhhhhhhhHHHHHHHH-HHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence            4456666778888888777 899999999999999977666665555555444433322  7888999999999999999


Q ss_pred             cchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH------HhhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          101 VPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA------DLVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       101 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      ....+++.++.+++|++.+|+......+|+++++.+...+.      ...||++.|++-+++.++..+++++++|+.+.
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999999999999999999999999999999987753      34689999999999999988888889998765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.47  E-value=2.2e-16  Score=124.73  Aligned_cols=140  Identities=23%  Similarity=0.222  Sum_probs=109.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccccccchhhc
Q 041627           32 ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----ISVIGLALYITFFAPGMGPVPWTVN  106 (204)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  106 (204)
                      ++..+....+ ..+|+++.|+++||+|||+.+..+..+..++.++..+.+     ..+...+++.|.+.++..+....++
T Consensus        49 ~~~~~~~~~g-~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~  127 (451)
T PF00083_consen   49 SLLTSSFFIG-AIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYI  127 (451)
T ss_pred             HHHHHHHHhh-hcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4555666666 899999999999999999999999999888888776654     5667778888999999999999999


Q ss_pred             ccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          107 SEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL---VGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       107 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      .|..|+++|++..++......+|..++..+.....+.   .+||..+....++.++. .+..+++||+++
T Consensus       128 ~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~  196 (451)
T PF00083_consen  128 SEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPR  196 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            9999999999999998888877777766655433222   34887777766665544 344567899854

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.47  E-value=2.2e-12  Score=99.43  Aligned_cols=155  Identities=10%  Similarity=0.094  Sum_probs=100.4

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccch---HhHHH-hhHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK---KLALS-SLAGVIISLVLLS   78 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---~~~~~-~~~~~~~~~~~~~   78 (204)
                      .++....++++..|+|+++++.|++.. .+........    .+.+..++++||.+||   +.... ...+..+......
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~----~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL----AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH----HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            566777888999999999998887754 3443333333    3344457888887654   33222 2222222222222


Q ss_pred             HHH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           79 WAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                      ...  ........+.+.+.....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..  +....|.++++.
T Consensus       276 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~  353 (368)
T TIGR00903       276 FELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAIL  353 (368)
T ss_pred             HccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            211  2222233334444555556677899999999999999999999999999999999887763  555667777777


Q ss_pred             HHHHHHHH
Q 041627          157 AVLAVVFV  164 (204)
Q Consensus       157 ~~i~~~~~  164 (204)
                      .+++.+..
T Consensus       354 ~~i~~~~~  361 (368)
T TIGR00903       354 ITIAFAIA  361 (368)
T ss_pred             HHHHHHHH
Confidence            76665554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.47  E-value=2.3e-12  Score=102.96  Aligned_cols=160  Identities=11%  Similarity=0.055  Sum_probs=109.1

Q ss_pred             hhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH---HHH---HH
Q 041627           11 NTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS---WAF---IS   83 (204)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~---~~   83 (204)
                      +....+.+.+. ++.|++..+.+...........+++.+++|+++||+|||+.+..+..+..+....+.   ...   ..
T Consensus       239 ~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~  318 (491)
T PRK11010        239 AFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYS  318 (491)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            33445566665 568999999887765555444899999999999999999877665554444332221   111   11


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                      +....++...+.+...+...++..+..|++.+++..++.+....+|+.+++.+.|.+.+..||+..|.+..++.+.+.+.
T Consensus       319 l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~  398 (491)
T PRK11010        319 MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLL  398 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            11122222222222334457888899999999999999999999999999999999999999988887777777666544


Q ss_pred             HHhhccCC
Q 041627          164 VILFVPET  171 (204)
Q Consensus       164 ~~~~~~e~  171 (204)
                      ..+ ++++
T Consensus       399 ~~~-~~~~  405 (491)
T PRK11010        399 LLV-CRQT  405 (491)
T ss_pred             HHH-HHhc
Confidence            433 3443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.46  E-value=4e-13  Score=107.02  Aligned_cols=152  Identities=12%  Similarity=0.062  Sum_probs=91.5

Q ss_pred             hhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchH-------hHHHhhHHHHHHHHHHHHHH
Q 041627           10 INTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKK-------LALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+.+..+.|.++.+ +|++..+.+.+.+..... ..++.++.|+++||++||+       .......+..+.........
T Consensus       268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~-~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~  346 (476)
T PLN00028        268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLM-NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN  346 (476)
T ss_pred             HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc
Confidence            34556778888654 699988877766666666 8999999999999998762       22222222222222221111


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                        ........+.+.+.....+..+.+..|.. +++|+++.|+.+..+.+|+.+++.+.+ ..+..+|+..|++.+++.++
T Consensus       347 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        347 SLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHH
Confidence              11222222233333333344556666765 478999999998877777777776653 11233577788887777666


Q ss_pred             HHHHH
Q 041627          160 AVVFV  164 (204)
Q Consensus       160 ~~~~~  164 (204)
                      +.+..
T Consensus       425 ~~~~~  429 (476)
T PLN00028        425 CTLPV  429 (476)
T ss_pred             HHHHH
Confidence            65443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.46  E-value=1.8e-12  Score=98.47  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=129.0

Q ss_pred             hhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            4 FQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      +...-|.++.......+.. ++|+++.+........... +++|+++.|++.||+|.|+++..+.++..+.++...+.. 
T Consensus       262 ~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vv-A~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~  340 (438)
T COG2270         262 FFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVV-AALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG  340 (438)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence            3445577788888888887 7999999966555555555 899999999999999999998888877776655544433 


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc-chhhhHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT-GSTFLILAGIAVL  159 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i  159 (204)
                       ...+...++.+.+.++.++.+-+|..+..|+++-++.+|+++..+...++++|.+.+.+.+.+|. |..+.....+..+
T Consensus       341 ~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i  420 (438)
T COG2270         341 ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI  420 (438)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence             56666778888999999999999999999999999999999999999999999999999888773 4444444444444


Q ss_pred             HHHHHHhhccCC
Q 041627          160 AVVFVILFVPET  171 (204)
Q Consensus       160 ~~~~~~~~~~e~  171 (204)
                      .. ..+...|+.
T Consensus       421 Gl-~~L~~v~~~  431 (438)
T COG2270         421 GL-LLLLRVKVP  431 (438)
T ss_pred             hH-hhEEeecCC
Confidence            43 334445544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.8e-12  Score=102.14  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=128.8

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH-HH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV-IG   86 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~-~~   86 (204)
                      .+.+..+.+.+.++++.+..+.++..++.... ..+.+++.+.+.||+|.|++.+.+.++..++.+...++.  +.+ +.
T Consensus        62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~-~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGV-YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             hheehhhHHHHHHHhCCCccHHHHHHHHHHHH-HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            35556778889999999999888888888888 799999999999999999999999999999998888876  333 33


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHh
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVIL  166 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  166 (204)
                      ..++.|.+.+..+....+.+...| +++|+.+.|+......+|.++-|.+...+.+..|||+.+++.+.+.+-.++....
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~  219 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGAL  219 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555656666555 6889999999999999999999999999999999999999988888766665555


Q ss_pred             hcc
Q 041627          167 FVP  169 (204)
Q Consensus       167 ~~~  169 (204)
                      ..|
T Consensus       220 ~rp  222 (509)
T KOG2504|consen  220 LRP  222 (509)
T ss_pred             cCC
Confidence            555

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.44  E-value=4e-12  Score=101.70  Aligned_cols=154  Identities=14%  Similarity=0.059  Sum_probs=117.6

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH------
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------   81 (204)
                      .|......-.+.+..+..-|+...+........- .++.++++|.++||++||++++.+-.+..+....+....      
T Consensus        24 lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP-~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~  102 (524)
T PF05977_consen   24 LGDWMQTVALAWLVTQLTGSPLMVALVQAASTLP-ILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLS  102 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            3444444555666666666766666655555444 788999999999999999999998877765554443322      


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                       +.++...++.+.+.....|...+.+.|+.|+++...+.++.....++...+||.++|.+....|....|.+.+...++.
T Consensus       103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~  182 (524)
T PF05977_consen  103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLIS  182 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5566666777787877888999999999999999999999999999999999999999999888777887766655554


Q ss_pred             HH
Q 041627          161 VV  162 (204)
Q Consensus       161 ~~  162 (204)
                      ..
T Consensus       183 i~  184 (524)
T PF05977_consen  183 IL  184 (524)
T ss_pred             HH
Confidence            33

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.44  E-value=7.4e-12  Score=97.08  Aligned_cols=154  Identities=13%  Similarity=-0.035  Sum_probs=121.2

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      ....+...+..+.|.+.++.|.++.+.+......... ..++.++.+++.||+|+|+.+..+.+...+....+.+.+  +
T Consensus       216 l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~-~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T TIGR00902       216 LIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLA-EIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFP  294 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHH-HHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence            3445566777888999999999999988887765555 889999999999999999999988888888777666554  4


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSAT-VNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      .+.....+.+...+...+....++.+. |+++|+++.++.+. ...+|..+++.+.|.+.+..|+ ..|+..+.+.+++.
T Consensus       295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            455556666766666667777888888 99999999998764 5568899999999999999885 56666666665553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10504 putative transporter; Provisional

Probab=99.44  E-value=3e-12  Score=101.85  Aligned_cols=140  Identities=12%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---   81 (204)
                      ...+......+.|.+.+. .|.++.+.+......... ..++.++.+++.||+|||+.+..+..+..+....+....   
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
T PRK10504        273 GRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLG-SMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG  351 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence            334445556678888875 788888766665544444 677889999999999999998888776666655544321   


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                        ........+.+.+.+...+....+..+..|++.|+++.++.+....+|..+++.+.+.+.+..++
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              11222333444444455566668888899999999999999999999999999999988777654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.42  E-value=1e-11  Score=97.44  Aligned_cols=164  Identities=13%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH-HH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW-AF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~   81 (204)
                      +++.+.++.++..++|.+.++ .++... .........+...+..+++|+++||+|+|+++.++.+...++...... .+
T Consensus       261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp  338 (462)
T PRK15034        261 YLATFGSFIGFSAGFAMLAKT-QFPDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP  338 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HcChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            466777777888899999876 333332 222222333447889999999999999999998888766666543221 11


Q ss_pred             -------HHHHHHHHHHHHhcccccccchhhcccccCC---------------------cchhhhhhHHHHHHHHHHHHH
Q 041627           82 -------ISVIGLALYITFFAPGMGPVPWTVNSEVYRE---------------------QYRGICGGMSATVNWISNLIV  133 (204)
Q Consensus        82 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~~~~~~~~~~g~~~~  133 (204)
                             .......+....+.+.-....+-++.+.+|+                     ++-|.+.|+....+.+|+++.
T Consensus       339 ~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~  418 (462)
T PRK15034        339 GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFI  418 (462)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchh
Confidence                   2222222222333344445566677777774                     156678889999999999999


Q ss_pred             HHHHHHHHHhhC-cchhhhHHHHHHHHHHHHHHhhc
Q 041627          134 AQNFLTVADLVG-TGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus       134 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      |.+.+...+..| +...++.+.+..+++.++.+.+.
T Consensus       419 p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        419 PQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988887766 66678888888888877666543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.42  E-value=9.8e-13  Score=100.70  Aligned_cols=171  Identities=19%  Similarity=0.142  Sum_probs=114.6

Q ss_pred             hhhhhhhhhHHhhhHHHHHHc-CC------CchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMA-GF------QSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL   76 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   76 (204)
                      |......+.+....|.+-.-+ |.      .++.....+.....++.++|+++.|++.||+|||+++...+++++++.++
T Consensus        51 ftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~  130 (538)
T KOG0252|consen   51 FTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSAL  130 (538)
T ss_pred             cccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHH
Confidence            333444455555556554432 22      22333445556666668999999999999999999999999999998886


Q ss_pred             HHHHH---------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH----h
Q 041627           77 LSWAF---------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD----L  143 (204)
Q Consensus        77 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~  143 (204)
                      .....         .++...|++.|++.++-+|...+..+|....+.||.-.+........|...+..+.-.+..    .
T Consensus       131 ~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~  210 (538)
T KOG0252|consen  131 SGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI  210 (538)
T ss_pred             hccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc
Confidence            55432         6778889999999999999999999999999999988876655555544444333322221    1


Q ss_pred             h-----------CcchhhhHHHHHHHHHHHHHHhhccCCCCcC
Q 041627          144 V-----------GTGSTFLILAGIAVLAVVFVILFVPETQGLT  175 (204)
Q Consensus       144 ~-----------~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~  175 (204)
                      .           =||..+.+ +.++.+...+..+.+|||++.+
T Consensus       211 ~~~~~~~~~ld~vWRl~~gl-g~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  211 FNGPSTYPHLDGVWRIIFGL-GAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             CCCCCCchHHHHHHHHHHHH-HHHHHHHHHHhhhcCCcchhHH
Confidence            1           15544443 4444444445555678886543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.42  E-value=9.9e-12  Score=96.60  Aligned_cols=155  Identities=15%  Similarity=0.016  Sum_probs=106.0

Q ss_pred             hhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH-HH----
Q 041627            7 FTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW-AF----   81 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~----   81 (204)
                      ..+......+.+.+.++.|+++++.+............++.++.|++.||+|+|+.+..+..+..+....... ..    
T Consensus       221 ~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  300 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA  300 (390)
T ss_pred             HHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            3444556667788888999999998887776655446788999999999999999887766554332222211 11    


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIA  157 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (204)
                         ........+.+...+...+.......+..++ +.|++.+++.+...++|..++|.+.+.+.+..|++..|...+.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~  380 (390)
T TIGR02718       301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLA  380 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence               1111111222222333334445555566655 889999999999999999999999999999999887777766555


Q ss_pred             HHHH
Q 041627          158 VLAV  161 (204)
Q Consensus       158 ~i~~  161 (204)
                      +++.
T Consensus       381 l~a~  384 (390)
T TIGR02718       381 VLAI  384 (390)
T ss_pred             HHHH
Confidence            5543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.42  E-value=4.1e-12  Score=96.42  Aligned_cols=162  Identities=19%  Similarity=0.320  Sum_probs=126.9

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      ++..+.++-++..++|.++++ +|.++.+.+......... +.+..+.+|+++||+|.+|++......++++..+.....
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~-g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLI-GALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            456777888899999999875 899999878777777777 899999999999999999999988888888777665542


Q ss_pred             ---------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhh
Q 041627           82 ---------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFL  151 (204)
Q Consensus        82 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~  151 (204)
                               .......+..+.+.+.-....+.++..++|+ +-|.+.|+....+.+|++.-|...+...+..| +...|+
T Consensus       306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~  384 (417)
T COG2223         306 TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM  384 (417)
T ss_pred             cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence                     2233334444455555556667788888865 56779999999999999999999999999988 777888


Q ss_pred             HHHHHHHHHHHHHHh
Q 041627          152 ILAGIAVLAVVFVIL  166 (204)
Q Consensus       152 ~~~~~~~i~~~~~~~  166 (204)
                      ++....+++.+..+.
T Consensus       385 ~~~~~~~~a~v~~~~  399 (417)
T COG2223         385 LLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887777665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.41  E-value=6.2e-12  Score=99.01  Aligned_cols=136  Identities=12%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             hhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---HHHHHH
Q 041627           11 NTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~   87 (204)
                      +....+.+.+.+....++.+.+....... ...+++.++.++++||+|||+.+..+..+.+++........   ......
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (437)
T TIGR00792       239 NIKNGVQVYYFTYVLGDPELFSYMGSIAI-VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL  317 (437)
T ss_pred             HHHcchhheeEeeecCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHH
Confidence            33333444444432223444454544444 44789999999999999999998888777766655544322   223333


Q ss_pred             HHHHHHhcccccccchhhcccccC-------CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYR-------EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTG  147 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  147 (204)
                      ..+.+.+.+...+..+++.+|..|       ++.+|+..|+.+....++..+++.+.+.+.+..|+.
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            344455555556777788888765       566899999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=99.39  E-value=7e-12  Score=97.14  Aligned_cols=135  Identities=19%  Similarity=0.239  Sum_probs=99.7

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--I   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~   82 (204)
                      ......+....+.|.+.++.|.++.+.+...+....+ ..++.++.|+++||+|||+....................  .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (398)
T TIGR00895       261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPT  339 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence            3444556777888988888999988877776666666 899999999999999999554433333332222222122  3


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV  140 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  140 (204)
                      ......++.+.+.+...+....+..|.+|+++|+++.|+......+++.++|.+.+.+
T Consensus       340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3444455666666667777889999999999999999999999999999999988764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.38  E-value=2.8e-12  Score=99.35  Aligned_cols=161  Identities=15%  Similarity=0.002  Sum_probs=129.3

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cC----CCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AG----FQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLL   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~   77 (204)
                      +.+-.++|++...+..|+.. .+    +++++...+.+.+... --...+++||++|| +|+|+.+.++.++..++.+++
T Consensus        31 ~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~sl-VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L  109 (498)
T COG3104          31 LWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSL-VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVL  109 (498)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            34556788888888877754 55    8888877777777777 57799999999999 599999999999999998888


Q ss_pred             HHHH----HHHHHHHHHHHHhcccccccchhhcccccCCcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhh
Q 041627           78 SWAF----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQY--RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFL  151 (204)
Q Consensus        78 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  151 (204)
                      ....    ..+.+...+...+.+..-+....++.|.+|+++  |-.++++.+...++|++++|.+.+++.+..||+..|.
T Consensus       110 ~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~  189 (498)
T COG3104         110 AISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG  189 (498)
T ss_pred             hccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence            7762    345555555667777777888899999998543  6668888889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 041627          152 ILAGIAVLAVVFVI  165 (204)
Q Consensus       152 ~~~~~~~i~~~~~~  165 (204)
                      ..++-+.++.+..+
T Consensus       190 ~aavGm~~gl~~f~  203 (498)
T COG3104         190 LAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777777655433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.36  E-value=1.8e-11  Score=93.76  Aligned_cols=130  Identities=13%  Similarity=0.021  Sum_probs=102.5

Q ss_pred             hhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---HHHHHHHHH
Q 041627           15 YYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---ISVIGLALY   90 (204)
Q Consensus        15 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   90 (204)
                      .+.|.+.++ +|.++.+.+........+ ..++.++.+++.||+|||+.+..+..+..++........   +......++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLG-ALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA  310 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            778888876 788888877777666665 789999999999999999988877666655555444332   233344555


Q ss_pred             HHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           91 ITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        91 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      .+.+.+...+....+..|..|+++|+++.++.+....+++.+++.+.+.+.+..|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5666666677788899999999999999999999999999999999999887653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.5e-10  Score=88.57  Aligned_cols=161  Identities=18%  Similarity=0.201  Sum_probs=116.8

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .++.+.+.+...+|...++++ .|++.+..++..-.+..+ ..+|..++|+++|| +.|+.+.....+..+....+.+..
T Consensus       220 t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~-~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~  297 (394)
T COG2814         220 TFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIA-GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG  297 (394)
T ss_pred             HHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHH-HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc
Confidence            355667777777777766665 788998888888777777 79999999999999 888888877777666666655544


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAV  158 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (204)
                         ........+.+..............++ .-++.+..+.++.....++|..+|..+++.+.+++|+....+..+...+
T Consensus       298 ~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~  376 (394)
T COG2814         298 ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL  376 (394)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence               222222222233332222333344555 3368899999999999999999999999999999999888888777777


Q ss_pred             HHHHHHHh
Q 041627          159 LAVVFVIL  166 (204)
Q Consensus       159 i~~~~~~~  166 (204)
                      ++.++...
T Consensus       377 ~a~~~~~~  384 (394)
T COG2814         377 LALLLALL  384 (394)
T ss_pred             HHHHHHHH
Confidence            77655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.35  E-value=1.3e-11  Score=95.04  Aligned_cols=144  Identities=19%  Similarity=0.252  Sum_probs=97.4

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc-chHhHH-Hhh-HHHHHHHHHHHH--
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG-RKKLAL-SSL-AGVIISLVLLSW--   79 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~~~-~~~-~~~~~~~~~~~~--   79 (204)
                      .....+.+..+.|.+.++ .|.++.+.+...+..... ..++.++.|+++||.. ||+... ... .....+......  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
T TIGR00881       228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELG-GLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP  306 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-cchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc
Confidence            344456677788888765 788888877777666665 7999999999999864 333222 111 111111111111  


Q ss_pred             H-H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627           80 A-F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTF  150 (204)
Q Consensus        80 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  150 (204)
                      . . .......+..+....+..+....+..|..|+++|+++.|+.+....+++.++|.+.+.+.+..||+..|
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       307 AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            0 1 222233334444444445556678899999999999999999999999999999999999999987653

>TIGR00896 CynX cyanate transporter

Probab=99.34  E-value=4.1e-11  Score=92.00  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=100.5

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-cchHhHHHhhHHHHHHHHHHHHHH-HH
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAF-IS   83 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~-~~   83 (204)
                      ....++....|+|.+.++.|.+..+.+...+....+ .++++++.|++.||+ +||+.+..+..+..++........ ..
T Consensus       209 ~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~-~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILISHGASAATAGSLLALMQLA-QAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG  287 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            344566777899999999999988878777777666 899999999999999 566666666666665555444432 11


Q ss_pred             HHHHHHHHHHhcccccccchhhcccc-cCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEV-YREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      ......+.+.+.+...+.......+. .+++++++..++.+....+++.++|.+.+.+.+..|
T Consensus       288 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       288 LWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22233445555555556655555544 446677889999999889999999999999998877

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=4.5e-11  Score=95.74  Aligned_cols=151  Identities=15%  Similarity=0.072  Sum_probs=119.0

Q ss_pred             hHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHH
Q 041627           12 TVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLA   88 (204)
Q Consensus        12 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   88 (204)
                      .+...+|.+.++ +|.+....+.+.+....+ .++|+++.+++.+|+++++.+..+.+..+++.+.+.+..  +......
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvG-ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVG-AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            344567888765 788888889988888877 899999999999999999988888887777777666654  3344444


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                      ++.|.+.....+...+...+..|++.||++.++..+....+..+|..+.|.+.+.+|.+..+.+.++..++..++
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            555665555566667888999999999999999999999999999999999999999877777665554444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=1.6e-10  Score=90.31  Aligned_cols=137  Identities=13%  Similarity=0.013  Sum_probs=92.3

Q ss_pred             hhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-------H
Q 041627           11 NTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-------I   82 (204)
Q Consensus        11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------~   82 (204)
                      .....+.|.+.+ ++|.++.+.+........+ ..++.++.++++||+++|+.+..+.....++........       .
T Consensus       232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~-~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  310 (406)
T PRK15402        232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGA-LIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYL  310 (406)
T ss_pred             HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHH
Confidence            344455677764 4788888767665555444 788999999999999999988887766665555443321       2


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGST  149 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  149 (204)
                      .......+.+.+.+...+........ .++++|++..+..+....++..+++.+.+.+.+..++...
T Consensus       311 ~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  376 (406)
T PRK15402        311 WLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLF  376 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence            22333334444444334443333333 3458999999999999999999999999988777775443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.30  E-value=2.5e-10  Score=88.54  Aligned_cols=154  Identities=13%  Similarity=0.102  Sum_probs=96.6

Q ss_pred             hhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH-HH--HHHHH
Q 041627           11 NTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW-AF--ISVIG   86 (204)
Q Consensus        11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~--~~~~~   86 (204)
                      +....+.+.+.+ ..|.++.+.+...+..... ..++.++.|++.||+|+|+.+..+..+..++.+.... ..  .....
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~-~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  294 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLG-MVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLI  294 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            333445555554 5899988877777777666 8999999999999999999888777766665544432 22  22222


Q ss_pred             HHHHHHHhccccccc-chhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-hCcchhhhHHHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPV-PWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-VGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      .....+.+..+..+. ......+..|++.++.+  ..+....+|..++|.+.+.+.+. .+|+..+...+.+..+.....
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            222222222222222 22334454555555544  34566789999999999999885 578777777666655554433


Q ss_pred             Hhh
Q 041627          165 ILF  167 (204)
Q Consensus       165 ~~~  167 (204)
                      ..+
T Consensus       373 ~~~  375 (382)
T PRK10091        373 LLY  375 (382)
T ss_pred             HHH
Confidence            333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.30  E-value=6.2e-11  Score=85.80  Aligned_cols=133  Identities=20%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH------
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------   81 (204)
                      ...|.+..|.|.+.+++|+++++...+......+ ..+ .++.|.+.||+|.+.++.++.+...++...+....      
T Consensus        16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G-~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~   93 (250)
T PF06813_consen   16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIG-SYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS   93 (250)
T ss_pred             CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHH-hhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence            3568999999999999999999977776666666 454 58899999999999999999998888877665443      


Q ss_pred             --HHHHHHHHHHHHhc-ccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           82 --ISVIGLALYITFFA-PGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        82 --~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                        .+.+......+..+ ....+.......+.|| ++||++.|+.-....+++.+-..+...+.+.
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence              22222222222222 2223444455668887 5799999999999989888877776555444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.30  E-value=2.7e-11  Score=96.30  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhH--------HHhhHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLA--------LSSLAGVIIS   73 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~--------~~~~~~~~~~   73 (204)
                      .++.+.+.+.+..|+|.++++ +|.+..+.+...+....+ ..++.++.|+++||+++|+..        ..+.......
T Consensus       270 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (465)
T TIGR00894       270 IFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF-AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPG  348 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            455666778888999999865 799988877776766666 899999999999998755321        1111111111


Q ss_pred             HHHHHHH--H---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--C-
Q 041627           74 LVLLSWA--F---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV--G-  145 (204)
Q Consensus        74 ~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~-  145 (204)
                      .......  .   ........+.+.+.++..+.......|..|+ .+|.+.++.+..+.+++.++|.+.+.+.+..  + 
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~  427 (465)
T TIGR00894       349 IFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNV  427 (465)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchH
Confidence            1111111  1   1122222222333333334444555676665 8999999999999999999999998877643  2 


Q ss_pred             cchhhhHHHHHHHHHHHH
Q 041627          146 TGSTFLILAGIAVLAVVF  163 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~  163 (204)
                      |...|.+.++..+++.++
T Consensus       428 ~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       428 WLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777776666666544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.30  E-value=7.7e-11  Score=88.88  Aligned_cols=145  Identities=12%  Similarity=0.142  Sum_probs=106.7

Q ss_pred             hhhhhhhhHHhhhHHHHHH---cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            5 QQFTGINTVMYYSPTIVQM---AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +......++..|.+.|+++   +|+++.+.+...+..... ..+|.++.+++.||+|+|+.+.++..+.+++..+.....
T Consensus       151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~-~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~  229 (310)
T TIGR01272       151 VYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGG-AMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH  229 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333456788899999975   488988878877777666 899999999999999999988777766666554333322


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI  152 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  152 (204)
                       ........+.+.+.+..+|...+...+..|++ .+++.++. ..+.+|+.+.|.+.|.+.|..|.+.++++
T Consensus       230 ~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       230 GYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence             22223444567777778888888888877754 44566664 56778999999999999998887777663

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=1e-10  Score=91.09  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=105.1

Q ss_pred             hHHhhhHHHHHHc----CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHH
Q 041627           12 TVMYYSPTIVQMA----GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVI   85 (204)
Q Consensus        12 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   85 (204)
                      ....+.|.+.++.    +.+....+...+..... ..++.+..|++.||+|||+.+.++..+.++.........  +...
T Consensus       233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~-~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~  311 (396)
T TIGR00882       233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELL-NALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVV  311 (396)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence            3444566676654    33444556555555545 688889999999999999998887777666555433332  3333


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM-SATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      ....+.+............+..+..|++.|++..+. .+....+|+.+++.+.+.+.+..|++..|.+.+++.++..++.
T Consensus       312 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       312 ILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344444444322223344566777888888887776 5677889999999999999999999888888887777665544


Q ss_pred             H
Q 041627          165 I  165 (204)
Q Consensus       165 ~  165 (204)
                      .
T Consensus       392 ~  392 (396)
T TIGR00882       392 V  392 (396)
T ss_pred             H
Confidence            3

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.29  E-value=2.4e-10  Score=89.28  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=91.8

Q ss_pred             HHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHH---HHH---HHHHHHH---
Q 041627           18 PTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS---WAF---ISVIGLA---   88 (204)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~---   88 (204)
                      |.+.++.|+++++.+............++.++.|++.||+|||+.+..+..+..+......   ...   +......   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4455668999988787766655544789999999999999999987766655544433321   211   2122211   


Q ss_pred             -HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           89 -LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                       +..+.......+....++.+.+|.+++    +.......++...++.+.+.+.+..||+..|...+.+.++..++
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence             122333333445556677777776554    44555556777767778999999999988888777766666444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.3e-11  Score=98.38  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=129.0

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccch--HhHHHhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK--KLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .....+++....++|.+.++.|+++.+.+.+.++.... ..++.++.|+++|+...+  ....++.+...++...+....
T Consensus       308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~-~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~  386 (509)
T KOG2504|consen  308 LFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVS-DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT  386 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHh-hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667888889999999999999999989988888888 999999999999998843  344445555555554444443


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAV  158 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  158 (204)
                        ..+.....+.+.+.+.........+.|+.+.++-..++|+...+..++..++|++.+.+.+..+ |...|+..+...+
T Consensus       387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~  466 (509)
T KOG2504|consen  387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFL  466 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHH
Confidence              5666677777887777778877899999999999999999999999999999999999988888 8788888777777


Q ss_pred             HHHHH
Q 041627          159 LAVVF  163 (204)
Q Consensus       159 i~~~~  163 (204)
                      ++...
T Consensus       467 ~s~~~  471 (509)
T KOG2504|consen  467 LSAVL  471 (509)
T ss_pred             HHHHH
Confidence            76544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.28  E-value=3e-10  Score=88.15  Aligned_cols=149  Identities=14%  Similarity=0.008  Sum_probs=105.2

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHH
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIG   86 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~   86 (204)
                      .......+.|.+.++.|.++.+.+...+..... ..+..++.+++.||+|+|+.+..+.....+.........  +....
T Consensus       220 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK11128        220 SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVA-EVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIV  298 (382)
T ss_pred             HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            344566777888888999988888877766554 788999999999999999998888777776655554443  33444


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATV-NWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                      ..++.+...+...+....+..+. +++++++..+..... ..+|..++|.+.|.+.+..|+ ..++..+.+.+++
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            44555555444455566677776 566678888887643 456668999999999998886 4555555444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.28  E-value=2.6e-11  Score=95.43  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=110.7

Q ss_pred             hhHHhhhHHHH-HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc----cccchHhHH-HhhHHHHHHHHHHHHH-H--
Q 041627           11 NTVMYYSPTIV-QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLID----HFGRKKLAL-SSLAGVIISLVLLSWA-F--   81 (204)
Q Consensus        11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~~~~~~~~~~-~--   81 (204)
                      +....|++.+. +..|+++...+....+.... .++..++.|.++|    |+||||..+ .+.....++...+... +  
T Consensus        18 ~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~-dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   18 SLLSSYLLYFYTDVLGLSPALAGLILLVGRIW-DAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-hhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence            33444555554 45799999988877777666 8999999999999    799877655 5666666666655533 2  


Q ss_pred             -------HHHHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------Cc
Q 041627           82 -------ISVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWISNLIVAQNFLTVADLV-------GT  146 (204)
Q Consensus        82 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~  146 (204)
                             ....+...+...+.........++.+|+.+ +++|.+..+.......+|..+...+.+.+.+..       +|
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence                   122333344455555556666789999997 578999999999988888877777777666543       35


Q ss_pred             chhhhHHHHHHHHHHHHHHhhccC
Q 041627          147 GSTFLILAGIAVLAVVFVILFVPE  170 (204)
Q Consensus       147 ~~~~~~~~~~~~i~~~~~~~~~~e  170 (204)
                      +....+.+++..+..++..+..+|
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeee
Confidence            566666666666666666666777

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2.6e-10  Score=86.41  Aligned_cols=153  Identities=12%  Similarity=0.023  Sum_probs=120.3

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----HHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----ISV   84 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~   84 (204)
                      ........|.+.+.++.+..+.+........+ ..+.++..+++.+|+|+|+.++.++.++++++.+..-..     ..+
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~g-Yf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~F  107 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGG-YFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFF  107 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHH-HHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            34455677888888999999977777777776 899999999999999999999999999999988875433     334


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-------------------hC
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-------------------VG  145 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~  145 (204)
                      +...+..+.+.+...+....+++.+.|++.-..-+.+...++.+|++++|.+.+.+...                   -.
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~  187 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS  187 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence            44445556666666788889999999998888899999999999999999999887662                   12


Q ss_pred             cchhhhHHHHHHHHHHHH
Q 041627          146 TGSTFLILAGIAVLAVVF  163 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~  163 (204)
                      ++.++...+....+..+.
T Consensus       188 v~~pYl~~~~~lvll~v~  205 (422)
T COG0738         188 VQFPYLILAGLLVLLAVL  205 (422)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            566777666665555443

>PRK09669 putative symporter YagG; Provisional

Probab=99.27  E-value=5.3e-11  Score=94.15  Aligned_cols=160  Identities=14%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             hhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHhH-HHhhHHHHHHHHHHHHHH---
Q 041627           11 NTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKLA-LSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus        11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~-~~~~~~~~~~~~~~~~~~---   81 (204)
                      ..+..|++.+.+ .+|++....+....+.-.. ..+..++.|+++||    +||||.. +.+.+...+........+   
T Consensus        26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~-dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~  104 (444)
T PRK09669         26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVL-DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFG  104 (444)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCC
Confidence            444566665555 5899999988888887777 89999999999998    7775554 455555555544333221   


Q ss_pred             -----HHHHHHHHHHHHhcccccccchhhccccc-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------Ccch
Q 041627           82 -----ISVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICGGMSATVNWISNLIVAQNFLTVADLV-------GTGS  148 (204)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~  148 (204)
                           ....+...+...+.........++.+|+. ++++|.+..+.......+|+.+++.+...+....       +|+.
T Consensus       105 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        105 ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence                 22222233333333344555568888987 5688998888888888888877776554444332       4555


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCC
Q 041627          149 TFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       149 ~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      .+.+.+++..+..+.+++..+|.
T Consensus       185 ~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        185 AMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEe
Confidence            55555655555544455555554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.27  E-value=1.6e-10  Score=101.07  Aligned_cols=161  Identities=17%  Similarity=0.151  Sum_probs=108.4

Q ss_pred             hhhhHHhhhHHHHHH-cCCCch-hhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH
Q 041627            9 GINTVMYYSPTIVQM-AGFQSN-QLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV   84 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   84 (204)
                      ..+....+.|.+.++ +|.+.. ..+++.+....+ .+++.++.|+++||+++|+.+.++.++.+++.+.+....  ...
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig-~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIG-IGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASV  325 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            334556667777654 788888 767766666655 799999999999999999888777776666655554433  334


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-hCcchhhhHHHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-VGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~  163 (204)
                      .+..++.+.+.+...+...+++.+..|++.||+++|+.+....+++.+++.+.+.+... .++...+++.+.+.++..+.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            44455556666666667778899999999999999999999998887777666554331 23333444444443333333


Q ss_pred             HHhhccC
Q 041627          164 VILFVPE  170 (204)
Q Consensus       164 ~~~~~~e  170 (204)
                      .....|+
T Consensus       406 ~~~~~~~  412 (1146)
T PRK08633        406 TLLLLPD  412 (1146)
T ss_pred             HHHHhHH
Confidence            3333443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.26  E-value=1.5e-10  Score=92.87  Aligned_cols=137  Identities=11%  Similarity=0.055  Sum_probs=104.6

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---   81 (204)
                      .....++...+.|.++++ +|.++.+.+......... ..++.++.|++.||+|||+.+..+..+..++...+....   
T Consensus       271 ~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~-~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~  349 (495)
T PRK14995        271 AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVA-SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST  349 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            344556677788888876 799998877776666555 799999999999999999988877777666655443321   


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                        +.......+.+.+.+...+.......+..|+++++.+.++.+....+|+.+++.+.+.+.+.
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23334455556666666666677778889999999999999999999999999999887653

>TIGR00889 2A0110 nucleoside transporter

Probab=99.26  E-value=1.1e-10  Score=91.68  Aligned_cols=162  Identities=12%  Similarity=0.002  Sum_probs=98.4

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccc-hHhHHHhhHHHHHHHHHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLLSW   79 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~   79 (204)
                      +.|..+..+....++++.++++ .|.+..+.+++.+....+ ..+++++.|.++||+|| |+.+..+..+..+......+
T Consensus        10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~-~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889        10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIA-AILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3456666766776777777755 899999999998988888 89999999999999965 66777666666555555444


Q ss_pred             HH--HHHHHHHHHHHHhcccccccch----hhcc----cccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627           80 AF--ISVIGLALYITFFAPGMGPVPW----TVNS----EVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGST  149 (204)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~----e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  149 (204)
                      ..  +.+...+.+.+.......+...    .+..    |......|.+..|      .+|..++|.+.+.+....+| .+
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~-~~  161 (418)
T TIGR00889        89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN-IQ  161 (418)
T ss_pred             hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh-HH
Confidence            32  3334444444444333322222    2222    2223233444444      35677777777766222223 35


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCC
Q 041627          150 FLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      +++.++..++..+ ..+.+||++
T Consensus       162 f~~~~~~~~~~~~-~~~~~~e~~  183 (418)
T TIGR00889       162 LYITAGSSALLGV-FALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHHHHH-HHhcCCCCC
Confidence            6665555555543 345677764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.26  E-value=1.1e-10  Score=93.19  Aligned_cols=138  Identities=12%  Similarity=0.002  Sum_probs=102.8

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH--H
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--F   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~   81 (204)
                      .....++....+.|.+.++ .|.++.+.+........+ ..++.++.|++.||+|||+.+..+..+..++...+...  .
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~  344 (485)
T TIGR00711       266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLA-PMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP  344 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3444556777888999876 789988877766665555 89999999999999999999888877777666655421  1


Q ss_pred             ----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           82 ----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                          ........+.+.+.+...+.......|..|+++|+++.++.+....+|+.+++.+.+.+.+.
T Consensus       345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22333344445544444444556667788999999999999999999999999999887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.24  E-value=4.2e-10  Score=87.54  Aligned_cols=138  Identities=13%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             hhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           11 NTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      ..+..+.|.+.+ ++|.++.+.+......... ..++.++.+++.||+|||+.+..+..+..++........  ......
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGV-SMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFG  298 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566654 5788888877666666555 789999999999999999998888777666665554433  211111


Q ss_pred             HHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                      ..+...+.+...  ......+..|.++|+   +.......++..+++.+.+.+.+..|+.......+
T Consensus       299 ~~l~~~g~~~~~--~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~  360 (392)
T PRK10473        299 ITLICAGFSVGF--GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG  360 (392)
T ss_pred             HHHHHHHHHHHh--HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            111111111111  123334555655554   44445556777788888888888888654333333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.24  E-value=2.5e-10  Score=85.75  Aligned_cols=152  Identities=20%  Similarity=0.086  Sum_probs=116.8

Q ss_pred             HHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 041627           18 PTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFA   95 (204)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   95 (204)
                      |......|.+..+..++......+ ..+++..+|.++|++|||+.+.......++..++-...+  ..+..++.+.+.+.
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~g-mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~  180 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLG-MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV  180 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhh-hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC
Confidence            344444677777777777777777 799999999999999999998888777777766665555  56677777777777


Q ss_pred             ccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627           96 PGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus        96 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      ++ .|...++-.|..|..+|+.-+=+. ....+|.++...+....+..+|||+........ +.......+++||+++
T Consensus       181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~p-l~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTP-LMFAARFLVWVYESPR  255 (528)
T ss_pred             CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH-HHHHHHHHhhcccCcc
Confidence            77 777778889999999998766665 777788888888888888899998877666644 4333455677899854

>TIGR00901 2A0125 AmpG-related permease

Probab=99.23  E-value=9.9e-11  Score=89.86  Aligned_cols=122  Identities=8%  Similarity=-0.004  Sum_probs=90.8

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-----
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-----   80 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----   80 (204)
                      ...+.+....+.|.+.++.|+++++.+............++.+++|++.||+|||+.+..+.++..+........     
T Consensus       221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  300 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH  300 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            345556777888999888999998877777766655478999999999999999998887777666655443332     


Q ss_pred             ------H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHH
Q 041627           81 ------F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNW  127 (204)
Q Consensus        81 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  127 (204)
                            .  +......++.+.+.+...+...++..|.+|+++||+.+|+.+...+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                  1  2233334444566666778888999999999999999998877543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.22  E-value=5.7e-10  Score=87.16  Aligned_cols=131  Identities=13%  Similarity=-0.004  Sum_probs=89.1

Q ss_pred             HHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc-cccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHH
Q 041627           13 VMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLID-HFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLAL   89 (204)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   89 (204)
                      ...+.|.+.++.+.++.+.+......... ...+....+++.| |++.|+.+..+..+..++...+....  ........
T Consensus       227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  305 (400)
T PRK11646        227 VMLMLPIMVNDIAGSPSAVKWMYAIEACL-SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLIC  305 (400)
T ss_pred             HHHhhhhhHHhhcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34577888888766777767666555544 4444444455554 56666666666666665555444333  22222233


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV  144 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  144 (204)
                      +.+.+.....+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+.+..
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            3444444455667788999999999999999999999999999999999998875

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.22  E-value=1.1e-09  Score=84.62  Aligned_cols=132  Identities=18%  Similarity=0.246  Sum_probs=91.2

Q ss_pred             hhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----
Q 041627            7 FTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----   81 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----   81 (204)
                      ....+....+.|.+.+ ++|.++.+.+......... ..++.++.|++.||+|||+.+..+..+..++...+....    
T Consensus       219 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIA-MIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL  297 (385)
T ss_pred             HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3345566677787776 5899988877777666555 799999999999999999988877666665554443321    


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV  140 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  140 (204)
                         ........+.+.+.+...+....+..|..| ++|+++.++.+.....++.+.+.+.+..
T Consensus       298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       298 GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               112222334445455556666777788876 6789999999888777666666666533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.21  E-value=4.3e-10  Score=89.70  Aligned_cols=136  Identities=13%  Similarity=0.006  Sum_probs=88.6

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH----H---H
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA----F---I   82 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~---~   82 (204)
                      .+....+.+.+.+....++...+......... .+++.++.++++||+|+|+.+..+..+.+++.+.....    .   +
T Consensus       247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~-~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
T PRK10429        247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAA-NLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL  325 (473)
T ss_pred             HHHHhhheeeEEEEECCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence            33444444444444333444444444433334 78899999999999999999887777655554443321    1   2


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccC-------CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYR-------EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                      ...+...+.+...+...+..+++++|..+       ++..|..++.......++..+++.+.+.+.+..|+
T Consensus       326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            23333344455555666777888998855       34455678888888999999999999998887665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.21  E-value=3e-10  Score=90.57  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             hhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc----cccchHh-HHHhhHHHHHHHHHHHHHH
Q 041627            8 TGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLID----HFGRKKL-ALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~-~~~~~~~~~~~~~~~~~~~   81 (204)
                      .....+..|++.|.++ .|++....+.+..+.-.. .++..++.|+++|    |+||||. ++.+.....++...+...+
T Consensus        20 ~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~-dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p   98 (473)
T PRK10429         20 FAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIW-DAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH   98 (473)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC
Confidence            3445566777777766 699999988888777666 8999999999999    5698554 5556666555544443211


Q ss_pred             --------HHHHHHHHHHHHhcccccccchhhccccc-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-------
Q 041627           82 --------ISVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-------  145 (204)
Q Consensus        82 --------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------  145 (204)
                              ....+...+...+.........++..|+. ++++|.+..+......++++.+.+.+...+.+..|       
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g  178 (473)
T PRK10429         99 LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFG  178 (473)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence                    12222233334444445556668889988 58999998988777777776666555443333322       


Q ss_pred             cchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          146 TGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      |+....+.+++..+..+.+.+..+|.
T Consensus       179 ~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        179 FQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCceec
Confidence            33333344444444444444445654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.21  E-value=5.1e-10  Score=83.76  Aligned_cols=159  Identities=19%  Similarity=0.126  Sum_probs=120.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-cchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +-.|...+|....|+|.+..|.|+|..+.+.+.+..... +.+.++....+++|. ++|+.......++.++.+.+.+.+
T Consensus       217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~-~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P  295 (395)
T COG2807         217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLA-QLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP  295 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            345677889999999999999999999999999999888 899999999999964 567766666777777776666655


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAV  158 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  158 (204)
                       .....-.++.+.+.++..+.....+.+-.+ +++-+.-.++.+..+.+-..++|.+.|++.|..| |...........+
T Consensus       296 ~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         296 GQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             hhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence             222222467778888888888787776665 4445566778888888888999999999999987 5555554444444


Q ss_pred             HHHH
Q 041627          159 LAVV  162 (204)
Q Consensus       159 i~~~  162 (204)
                      +..+
T Consensus       376 ~m~i  379 (395)
T COG2807         376 LMLI  379 (395)
T ss_pred             HHHH
Confidence            4433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=7.3e-11  Score=85.70  Aligned_cols=136  Identities=15%  Similarity=0.081  Sum_probs=96.3

Q ss_pred             hhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHH-HHHHHHHHHHHH
Q 041627            9 GINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL-VLLSWAFISVIG   86 (204)
Q Consensus         9 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~   86 (204)
                      .++-+...-|.+.+ ++|+++...+...+....+ +++.+++.|.++||+||+...+.+..+..+.. ..+.+..+....
T Consensus       279 a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~I-sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~  357 (459)
T KOG4686|consen  279 AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGI-SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYT  357 (459)
T ss_pred             HHHHHhhhhHHHHHHhhCCChhhccchhhhhhhh-hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHH
Confidence            33344444555555 4899999988888888777 89999999999999999987766554444333 333333322222


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      ...+.+..........|..++.+.|+++-|+++|..+...++|-.+.|.+.+.+.+.-|
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            33333333333333456777778899999999999999999999999999999888765

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.19  E-value=2.5e-09  Score=83.41  Aligned_cols=151  Identities=19%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             hhhhhhHHhhh-HHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHH-HHHHHHHH--H
Q 041627            7 FTGINTVMYYS-PTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS-LVLLSWAF--I   82 (204)
Q Consensus         7 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~-~~~~~~~~--~   82 (204)
                      +.+.+....+. |.+.++.|++..+.+........+ ..++.++.+++.||.+| +.+.....+..+. ........  +
T Consensus       229 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~-~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~~~~  306 (394)
T PRK10213        229 FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIA-SFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGSDKI  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH-HHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34444545554 777788899988877777776666 79999999999999644 4433333332322 22222222  3


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                      ......++.+.+.....+....++.+..| +++++..+.......++..+++.+.+.+.+..|++..+...+.+..+.
T Consensus       307 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        307 VATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            33334445555555555666667777777 445667777777888999999999999999888776666655444333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=4e-10  Score=88.77  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHH
Q 041627           43 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMS  122 (204)
Q Consensus        43 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  122 (204)
                      ..+.++..|.++||+|||..+........+..+...+..++..+..- ..+......+...+++++....++|...+|+.
T Consensus        75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~-l~g~~~~~~s~~~a~vadis~~~~R~~~~gll  153 (463)
T KOG2816|consen   75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLG-LSGGFSAIFSVGFAYVADISSEEERSSSIGLL  153 (463)
T ss_pred             HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcc-cccchhhhhhhhhhheeeccchhHHHHHHHHH
Confidence            68899999999999999999999888888777766666544333111 12222334466779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcC
Q 041627          123 ATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLT  175 (204)
Q Consensus       123 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~  175 (204)
                      ......+..++|...+.+....+....+.+..+...+..+....++||+..++
T Consensus       154 ~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  154 SGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            99999999999999999999999888899888888888888888999986544

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=6e-10  Score=88.26  Aligned_cols=140  Identities=11%  Similarity=-0.011  Sum_probs=94.7

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---   81 (204)
                      .+.+........|.+.++ +|.++.. +.+.........+++.++.+++.||+|+|+.+..+..+..++.+.+.+..   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~  318 (448)
T PRK09848        240 VLISTFAVSASSLFYVRYVLNDTGLF-TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWS  318 (448)
T ss_pred             HHHHHHHHhhhheeeEeeecCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchh
Confidence            344444555556666654 5554443 43333333333678899999999999999999988877776665554422   


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ-------YRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                       +.......+.+.+.+...+...+..+|..|.+       ++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             22333344455555566667777888887643       468889999999999999999999988877665

>PRK11043 putative transporter; Provisional

Probab=99.18  E-value=1.5e-09  Score=84.70  Aligned_cols=133  Identities=12%  Similarity=0.075  Sum_probs=88.9

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-----H--
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-----F--   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~--   81 (204)
                      ..+....+.|.+.++.|+++.+.+......... ..++.++.+++.||+|+|+..........++.......     .  
T Consensus       218 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~-~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (401)
T PRK11043        218 AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIA-FLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSL  296 (401)
T ss_pred             HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            445566778889888999988877655444444 78899999999999999987655544443333322111     1  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                      ..........+...+...+.......|..| ++|+++.|+.+.....++..++.+.+.+.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        297 VPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            222222333444445555666566667666 5799999999998888888888888877653

>PRK11462 putative transporter; Provisional

Probab=99.17  E-value=2.1e-09  Score=85.42  Aligned_cols=161  Identities=13%  Similarity=0.080  Sum_probs=102.9

Q ss_pred             hhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHhHH-HhhHHHHHHHHHHHHHH--
Q 041627           10 INTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKLAL-SSLAGVIISLVLLSWAF--   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~~~~~~~~~~~~~~~~--   81 (204)
                      +..+..|+..+.++ .|+++...+....+.-.. .++..++.|.++||    +||||..+ .+.+...++.+.+...+  
T Consensus        25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~-Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~  103 (460)
T PRK11462         25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARAL-DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL  103 (460)
T ss_pred             HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH-HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC
Confidence            34555666666555 799999878777766666 89999999999996    68877655 45455555554443222  


Q ss_pred             ------HHHHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-------cc
Q 041627           82 ------ISVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-------TG  147 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~  147 (204)
                            ....+...+...+.........++.+|+.+ +++|.+..++....+.+|+.+++.+...+....|       |.
T Consensus       104 s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        104 SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence                  122222233334444444556678888876 7899999999999988888777776554444433       44


Q ss_pred             hhhhHHHHHHHHHHHHHHhhccCC
Q 041627          148 STFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       148 ~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      ....+.+++..++..+++...+|.
T Consensus       184 ~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceec
Confidence            444455555445544444445554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.17  E-value=2.7e-09  Score=80.22  Aligned_cols=159  Identities=17%  Similarity=0.047  Sum_probs=109.5

Q ss_pred             hhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 041627           15 YYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVIGLALYITF   93 (204)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   93 (204)
                      +|.=.+.+++|+++.+++.+....... +.+...+.|.++||+|||+..+..+++..++++...... ..+++.+++.|.
T Consensus        55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~S-s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQIAILFVAGFAS-SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             chhHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            444445578999999988887777766 789999999999999999998888888888776544333 666777777777


Q ss_pred             hcccccccchhh-ccc----ccCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhCc--chhhhHHHHHHHHHHHHHH
Q 041627           94 FAPGMGPVPWTV-NSE----VYREQYRGICGGMSA-TVNWISNLIVAQNFLTVADLVGT--GSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        94 ~~~~~~~~~~~~-~~e----~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~  165 (204)
                      ......+..-++ +.|    -+|++..+...+... ..+.+.++.++.+...+.+..+.  ..+|.....+..++.++..
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            766666554333 233    345555555555555 33445566666666667776654  5677777777667766666


Q ss_pred             hhccCCCCc
Q 041627          166 LFVPETQGL  174 (204)
Q Consensus       166 ~~~~e~~~~  174 (204)
                      ...+|+.+.
T Consensus       214 ~~W~ENyg~  222 (354)
T PF05631_consen  214 KTWPENYGD  222 (354)
T ss_pred             hcccccCCC
Confidence            666787544

>PRK10054 putative transporter; Provisional

Probab=99.16  E-value=6.6e-10  Score=86.66  Aligned_cols=144  Identities=14%  Similarity=0.028  Sum_probs=95.9

Q ss_pred             hhhHHHHHH---cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH--H-HHHHHHH
Q 041627           15 YYSPTIVQM---AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--F-ISVIGLA   88 (204)
Q Consensus        15 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~   88 (204)
                      .+.+.+...   .+.+....+......... .....+..|++.||.++|+.+..+..+..+........  . +......
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (395)
T PRK10054        227 SCISQYVMVVADSDFAEKVVAVVLPVNAAM-VVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSA  305 (395)
T ss_pred             hhHHHHHHHhcccchHHHHHHHHHHhhhhh-eeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence            345555433   344444444444444333 45667888999999999998888877666665554432  1 2233344


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHH
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (204)
                      ...+.+.....+....++.+..|++.|++..+..+ ...+|..++|.+.+.+.+..|....+++.+....+.
T Consensus       306 ~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~  376 (395)
T PRK10054        306 AVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAA  376 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence            44455554545666778899999999999988654 566899999999999999998766666654444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.16  E-value=1.2e-09  Score=86.41  Aligned_cols=147  Identities=14%  Similarity=0.082  Sum_probs=104.7

Q ss_pred             hhhhhhHHhhhHHHH-H-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HH
Q 041627            7 FTGINTVMYYSPTIV-Q-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-IS   83 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~   83 (204)
                      ..+.++...|.+.+. + ..|.++.+.+......... ..++.++.+++.||+|||+++..+..+..+......... ..
T Consensus       271 ~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~-~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK10133        271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC-FFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV  349 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence            344455556777774 4 4799999888877777776 899999999999999999988777666555444333322 22


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGI  156 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~  156 (204)
                      ......+.+++.+...|.......|..|++ .+++.++... ...++.++|.+.+.+.+..| .+..|++....
T Consensus       350 ~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            233455667778888888888888887754 5667777754 45678889999999888887 56666543333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.16  E-value=8.4e-10  Score=96.66  Aligned_cols=148  Identities=11%  Similarity=-0.068  Sum_probs=105.0

Q ss_pred             hhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH------
Q 041627            8 TGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA------   80 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------   80 (204)
                      ...+.+..++|.+.++ +|.+..+.+.+.+....+ .+++.++.|+++||.++++.+..+.++..++.+.+.+.      
T Consensus       239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g-~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (1140)
T PRK06814        239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVG-VAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPA  317 (1140)
T ss_pred             HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHH-HHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccc
Confidence            3345666788988876 788888888877777777 79999999999998877766555444444433322221      


Q ss_pred             --------------H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-
Q 041627           81 --------------F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL-  143 (204)
Q Consensus        81 --------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-  143 (204)
                                    .  +.+.+..++.+.+.+...+...+++.+..|++.||+++|+.+....++..+++.+.+.+.+. 
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~  397 (1140)
T PRK06814        318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG  397 (1140)
T ss_pred             ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                          1  33344455556666666667789999999999999999999999999999999998887643 


Q ss_pred             hCcchhhhHHHHH
Q 041627          144 VGTGSTFLILAGI  156 (204)
Q Consensus       144 ~~~~~~~~~~~~~  156 (204)
                      .+....+++.+..
T Consensus       398 ~~~~~~~~~~~~~  410 (1140)
T PRK06814        398 FSIPWIILFIALA  410 (1140)
T ss_pred             cCHHHHHHHHHHH
Confidence            3444444443433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=3.6e-09  Score=81.79  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             hhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH---H-
Q 041627            7 FTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA---F-   81 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~-   81 (204)
                      +.+.+.+..+.|.+.. +.|.++.+.+......... ..++.++.|++.||+|||+.+..+.....+........   . 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (377)
T PRK11102        207 FAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVF-LFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDL  285 (377)
T ss_pred             HHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555666676655 4799988878777766655 89999999999999999998887766544333222111   1 


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHH-HHHHHHHHH
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNW-ISNLIVAQN  136 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~~  136 (204)
                        +.................+....+..|..| ++|+++.++.+.... ++..+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        286 GFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence              111112222222222333344456677766 789999988776543 344444443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.13  E-value=1.5e-09  Score=86.43  Aligned_cols=164  Identities=16%  Similarity=0.039  Sum_probs=106.8

Q ss_pred             hhhhhhhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc-----chHhHHHhhHHHH-HHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG-----RKKLALSSLAGVI-ISLVL   76 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~~~~~~-~~~~~   76 (204)
                      +.+... +.....++.+++ ++|.++++.+.+.+..... ..+ .+++|.++||++     ||+.++++.++.. +....
T Consensus        36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lp-w~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~  112 (468)
T TIGR00788        36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLG-WAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL  112 (468)
T ss_pred             HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHH-HHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence            444455 444444455555 5899999987777777666 454 555999999997     6666666655542 22222


Q ss_pred             HHHHH---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhh---hhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627           77 LSWAF---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC---GGMSATVNWISNLIVAQNFLTVADLVGTGSTF  150 (204)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  150 (204)
                      +....   .......++..++........-.+..|..+ +++...   .+.......+|..+++.+.+.+.+..+|+..|
T Consensus       113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f  191 (468)
T TIGR00788       113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILF  191 (468)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence            22111   122224455555566666778899999988 444433   33444444579999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhccCCC
Q 041627          151 LILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       151 ~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      ++.+.+.++. .....+.+|.+
T Consensus       192 ~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       192 LITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHHHHHHH-HHHHHhccccc
Confidence            8888777766 44456677764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.11  E-value=1.1e-08  Score=79.75  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=100.3

Q ss_pred             hhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHH
Q 041627           11 NTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGL   87 (204)
Q Consensus        11 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~   87 (204)
                      .......|.+.++ +|.++.+.+........+ ..++++..+++.||.++|+.+..+... .+.........  +.....
T Consensus       222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g-~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK11195        222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIG-IAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPL  299 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH-HHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHH
Confidence            3344455555554 788888888877777666 799999999999999998877766433 33322222222  223333


Q ss_pred             HHHHHHhcccccccchhhcccccCCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627           88 ALYITFFAPGMGPVPWTVNSEVYREQY-RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      .++.+.+.+...+...+...|..|++. +|++.++.+...+++..++..+.+. .+..|-+..+.+.+...++...+.
T Consensus       300 ~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        300 LILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHH
Confidence            444555555555556677778766654 7999999999999999998888874 467777666666554444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=5.3e-10  Score=85.31  Aligned_cols=128  Identities=21%  Similarity=0.290  Sum_probs=96.9

Q ss_pred             hhhhhhhHHhhhHHH-HHHcCCC-chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            6 QFTGINTVMYYSPTI-VQMAGFQ-SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      .....+....+.|.+ .+++|.+ ..+.+...+..... ..++.++.|++.||+++|+..........+.........  
T Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (352)
T PF07690_consen  218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIV-GIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS  296 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334566788889988 6678888 67766666766666 788899999999999998877766665555554443221  


Q ss_pred             ---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHH
Q 041627           82 ---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVA  134 (204)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  134 (204)
                         ........+.+.+.+...+....+..|..|+++|+++.|+.+...++++.++|
T Consensus       297 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  297 SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence               33334455566666667788889999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.09  E-value=7.4e-09  Score=80.69  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=104.0

Q ss_pred             hhhhhhHHhhhHHHHHHcC-CCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-H--H
Q 041627            7 FTGINTVMYYSPTIVQMAG-FQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-F--I   82 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~--~   82 (204)
                      .........|.+.+.++.| .+....+...+..... .++.-...+++..|+|.|+++.++.+..++=...+... +  +
T Consensus       220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~a-Ei~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~  298 (400)
T PF03825_consen  220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVA-EIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP  298 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            3445567788888999988 5666656555554444 88999999999999999999999888877666555554 1  2


Q ss_pred             HHHHHH----HHHHHhcccccccchhhcccccCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhCcch
Q 041627           83 SVIGLA----LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATV-NWISNLIVAQNFLTVADLVGTGS  148 (204)
Q Consensus        83 ~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~  148 (204)
                      ......    .+.+...+........++.+..|++.|+++.++.... ..+|+.++..+.|++.+.+|.+.
T Consensus       299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            222221    2344444455566779999999999999999988875 57899999999999999887543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.09  E-value=2.6e-09  Score=83.16  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=92.8

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc-chHhHHHhhHHHHHHHHHHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG-RKKLALSSLAGVIISLVLLSWA   80 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~~   80 (204)
                      .+|.++..+....++.|.++++.|++..+++.+.+..... .+++.+++|.++||.+ +|+.+.+..++..+........
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~-~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLA-RIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577888888999999999999999999999999988888 8999999999999986 4666655555554444333333


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQN  136 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~  136 (204)
                      .  +.+.....+...+.....|...++.-+...  +++.-+|-....+.+|-.++...
T Consensus        89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence            2  333333444444444455666666666554  34557787777777777766554

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=9.4e-09  Score=81.40  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccccchhhcccccC----
Q 041627           40 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIGLALYITFFAPGMGPVPWTVNSEVYR----  111 (204)
Q Consensus        40 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----  111 (204)
                      ....+++.+++++++||+|+|+.+..+.....+.........    ........+.+.+.+...+..+++++|..+    
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            333678889999999999999998877665554333222221    333444455666666777888889988876    


Q ss_pred             ---CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627          112 ---EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus       112 ---~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                         ++..|...+.......+|..+++.+.+.+.+..|+
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence               23345677888888899999999999998887765

>PRK11462 putative transporter; Provisional

Probab=99.02  E-value=3.2e-08  Score=78.77  Aligned_cols=114  Identities=13%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccccchhhcc
Q 041627           32 ALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----ISVIGLALYITFFAPGMGPVPWTVNS  107 (204)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (204)
                      +......... .+++.+++++++||+|+|+.+..+..+..+......+..    .......++.+.+.+...+..+.+.+
T Consensus       266 ~~~l~~~~i~-~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        266 VAFLTTYCVG-NLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444344 788999999999999999887654443333222222211    12222223334444444455566777


Q ss_pred             cccC-------CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627          108 EVYR-------EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus       108 e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                      |..+       .+..|..++.......+|..+++.+.+.+.+..|+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7665       23334445666688889999999999888876554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.01  E-value=3.6e-08  Score=77.74  Aligned_cols=142  Identities=16%  Similarity=0.167  Sum_probs=107.4

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +++..+........+.+.++.-.++...+......... ..++.++.++++||+|+|+.+..+..+.+++.+...+..  
T Consensus       235 ~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~-~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~  313 (428)
T PF13347_consen  235 FLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVA-SIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG  313 (428)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHH-HHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence            34455555666667777776433334445555555444 899999999999999999999999988888777765543  


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCC-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYRE-------QYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                        +...+...+.+.+.+......+++.+|..+.       ++.|...|+......++..+++.+.+.+.+..|+
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence              5566666777788888888889999998873       4468888899999999999999999988877664

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=9.7e-09  Score=80.52  Aligned_cols=140  Identities=11%  Similarity=-0.004  Sum_probs=96.2

Q ss_pred             hhhHHhhhHHHHHHcC--CCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHHH
Q 041627           10 INTVMYYSPTIVQMAG--FQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVIG   86 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~   86 (204)
                      ......+++.+.++.+  .+....+...+..... ..+|.++++++.||+++|+.+.+......+..+...... .....
T Consensus       248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~-~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~  326 (410)
T TIGR00885       248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVI-FFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLY  326 (410)
T ss_pred             HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            3356677888887653  3333334344555444 789999999999999999988887777776666555543 23344


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh------CcchhhhH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV------GTGSTFLI  152 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~  152 (204)
                      ...+.+++....+|..+....+..+++.+..+.++...  .+|+.+.|.+.|.+.|..      +.+..|++
T Consensus       327 ~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~  396 (410)
T TIGR00885       327 CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL  396 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence            55566677777778888999999887765434444443  389999999999999965      34455554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.99  E-value=1.5e-09  Score=85.87  Aligned_cols=165  Identities=21%  Similarity=0.257  Sum_probs=109.8

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccch--------Hh-HHHhhHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK--------KL-ALSSLAGVI   71 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--------~~-~~~~~~~~~   71 (204)
                      ..++.+.+++.+..|+|.|+++ +|++..+.+++.++.... ..+..+++|.++||.-+|        |. -.++....+
T Consensus       266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~-~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a  344 (466)
T KOG2532|consen  266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLA-MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA  344 (466)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence            3577888999999999999997 899999978777777666 899999999999998663        11 122333333


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH---hhC
Q 041627           72 ISLVLLSWAF---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD---LVG  145 (204)
Q Consensus        72 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~  145 (204)
                      ++.+.+.+..   ....+..+....+..+..............+++-+..+|+.+....+.++++|.+.+.+..   ...
T Consensus       345 i~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e  424 (466)
T KOG2532|consen  345 VFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE  424 (466)
T ss_pred             HHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH
Confidence            3333333332   2122222222222233332222222222146778999999999999999999999998883   236


Q ss_pred             cchhhhHHHHHHHHHHHHHHhh
Q 041627          146 TGSTFLILAGIAVLAVVFVILF  167 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~~~~~  167 (204)
                      |+..|++.+++.++..++..++
T Consensus       425 W~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  425 WRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHhchheeEe
Confidence            9999999888888776543333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.98  E-value=4.1e-08  Score=76.88  Aligned_cols=140  Identities=19%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---   81 (204)
                      .+.+.+.......+|.+. .|.++............. .+++.++...+.+|+|+|+++.++.++.+++.....+..   
T Consensus       248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~-~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~  326 (467)
T COG2211         248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAG-LLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS  326 (467)
T ss_pred             HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            334444444444444433 344444433333444333 566799999999999999999999999999888877765   


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccC-------CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYR-------EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGT  146 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  146 (204)
                       ...++..++.+.+.+...+..|++++|..+       .+.-|...+....+.-+|..++..+.++.....|+
T Consensus       327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             334444466677777888899999998765       34446677788888889999999999988887664

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.98  E-value=3.4e-08  Score=74.21  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=122.5

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHHHHH
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVIGLA   88 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   88 (204)
                      +.++.+.++.+.+++|.+.+..+.+.+..... ....+++..+++.|+|.++.+..+.++..++..+=.... ..++...
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~-fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt  106 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLA-FGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGT  106 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45677889999999999999988877777666 788999999999999999999998888888877654433 4455555


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhHHHHHHHHHHHH
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-GTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~  163 (204)
                      .+.+.+....+...+..+-|.||++ -+..+|++.....+++.+++.+...+.++. +|+....+.+.+.++..+.
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            6666666666778889999999855 577999999999999999999888777776 6999888777777766543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.95  E-value=8.9e-08  Score=78.80  Aligned_cols=156  Identities=15%  Similarity=0.083  Sum_probs=113.6

Q ss_pred             hhhhHHhhhHHHHH-HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHHHH-----
Q 041627            9 GINTVMYYSPTIVQ-MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAF-----   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~-----   81 (204)
                      ++|++...+..|+. .+|++++............ .-+..+++|+++|+ +||++.+.++.++..++..++....     
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l-~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYL-CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            35666666666654 4788888877777777666 68899999999995 7999999988888877776665432     


Q ss_pred             -----HHHHHHHHHHHHhcccccccchhhcccccCCc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------Cc
Q 041627           82 -----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ---YRGICGGMSATVNWISNLIVAQNFLTVADLV-------GT  146 (204)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~  146 (204)
                           ...+....+..++.++.-+...+...|.++++   .|-..+.+.+...++|+++++.+.+++.+..       +|
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence                 11333444555666666777778888888754   3667888999999999999999999887543       47


Q ss_pred             chhhhHHHHHHHHHHHHHH
Q 041627          147 GSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus       147 ~~~~~~~~~~~~i~~~~~~  165 (204)
                      ...|.+.++..+++.++..
T Consensus       161 ~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777777766655433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.94  E-value=1.5e-09  Score=83.90  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHH--HH-HHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII--SL-VLLS   78 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~--~~-~~~~   78 (204)
                      .|..+..+....++.|.++++ .|++.++.|.+.++.... ..+.+++.|.++||+|.||-++.......+  +. +...
T Consensus        16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~-~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v   94 (412)
T PF01306_consen   16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLF-ALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYV   94 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHH-HHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667778888888876 899999999999998777 899999999999999976655443332222  11 1111


Q ss_pred             HHH---HHHHHHHHHHHHhcccc-c---ccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhh
Q 041627           79 WAF---ISVIGLALYITFFAPGM-G---PVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFL  151 (204)
Q Consensus        79 ~~~---~~~~~~~~~~~~~~~~~-~---~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  151 (204)
                      +.+   .......++.+...+.. .   ++.-++..+.  .++.+.-+|-....+.+|..++..+.|.+.+..+ +..++
T Consensus        95 ~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p-~~~fw  171 (412)
T PF01306_consen   95 FGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASLLAGILFNINP-NIIFW  171 (412)
T ss_dssp             HHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc-cHHHH
Confidence            221   11112222222222221 1   2233333333  2445567888889999999999999998886433 45666


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 041627          152 ILAGIAVLAVVFVILFVP  169 (204)
Q Consensus       152 ~~~~~~~i~~~~~~~~~~  169 (204)
                      +.....++..++.....|
T Consensus       172 i~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  172 IASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             HHHHHHHHHHHHHHSS--
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            655444444333333333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.93  E-value=6.1e-09  Score=80.52  Aligned_cols=156  Identities=15%  Similarity=0.082  Sum_probs=113.4

Q ss_pred             hhHHHHHHcCC----CchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHH
Q 041627           16 YSPTIVQMAGF----QSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLAL   89 (204)
Q Consensus        16 ~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   89 (204)
                      ..|.|.+.+.-    ++...+.+.+.-... .++...+..++.+|+|.|+.++++..++.+=....++.+  +.+.....
T Consensus       242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~-E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~kl  320 (412)
T PF01306_consen  242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFL-EALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccChhHHhHHHHHHHHH-HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            34555554433    334456666666555 889999999999999999999998888777666666555  55555555


Q ss_pred             HHHHhcccccccchhhcccccCCcchhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhc
Q 041627           90 YITFFAPGMGPVPWTVNSEVYREQYRGICGGMS-ATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      +-+.-.........-|+++.+|++..++.+.+. .....++..+.+...|.+.|..|.+..|++.+.+.+...++..+.+
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            555555455556678999999999999988885 4667888899999999999999998899888888777777777777


Q ss_pred             cCCC
Q 041627          169 PETQ  172 (204)
Q Consensus       169 ~e~~  172 (204)
                      ++.+
T Consensus       401 ~~~~  404 (412)
T PF01306_consen  401 KKDK  404 (412)
T ss_dssp             --SS
T ss_pred             cCCC
Confidence            6543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.92  E-value=8.7e-09  Score=79.26  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=81.9

Q ss_pred             hhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH----
Q 041627            6 QFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA----   80 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----   80 (204)
                      .....+.+..+.|.+.++ +|.++.+.+......... ..++.++.|+++||+|||+.+..+......+.......    
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (366)
T TIGR00886       237 TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLL-GSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP  315 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence            334456677888888865 688888877666666555 78999999999999999987776665554444433321    


Q ss_pred             -H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHH
Q 041627           81 -F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWIS  129 (204)
Q Consensus        81 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  129 (204)
                       . ..............+...+..+...+|..| ++||++.|+.+..+++|
T Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       316 LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence             1 112222233333344445566778888887 68999999988876654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.92  E-value=7.7e-08  Score=77.75  Aligned_cols=138  Identities=18%  Similarity=0.186  Sum_probs=101.0

Q ss_pred             HHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---H--HHHHHHHHHHHhcccccccchhhcccccCCcchh
Q 041627           42 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---I--SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG  116 (204)
Q Consensus        42 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  116 (204)
                      ...+.....+...|+.|||.....+..+..++.+...+..   .  .......+...+........+.+.+|.+|+..|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            3677888889999999999999999998888888877665   2  2444444545555555556689999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcCHHHHH
Q 041627          117 ICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFLEVE  180 (204)
Q Consensus       117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~  180 (204)
                      .+.+.......++++++|.+...... ......+..++....+...+...++||++++...+..
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL  504 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence            99999999999999999888754433 2222232233555555555666789999887665433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.92  E-value=1.4e-08  Score=79.62  Aligned_cols=153  Identities=14%  Similarity=0.065  Sum_probs=111.3

Q ss_pred             HHHHH--cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccc-hHhHHHhhHHHHHHHHHHHHHH-------HHHHHHH
Q 041627           19 TIVQM--AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLLSWAF-------ISVIGLA   88 (204)
Q Consensus        19 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~   88 (204)
                      .|.++  .+-+.+..|+..+....+ .+++++..|+...|.++ |+.++.+.++++++.++.....       +.++..|
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg-~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R  137 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLG-HAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVAR  137 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHH-HHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            45555  566777778888887777 89999999999999986 7778889999999888874332       4445555


Q ss_pred             HHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--C-----------cchhhhHHHH
Q 041627           89 LYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV--G-----------TGSTFLILAG  155 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~  155 (204)
                      ++.|+ +.+.....-.|+++..-.++|.++++.......+|.++||.+...+....  |           +..+-|+..+
T Consensus       138 ~l~Gv-g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i  216 (488)
T KOG2325|consen  138 ILTGV-GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI  216 (488)
T ss_pred             HHcCc-CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence            55444 33445667799999888899999999888877888888887765543221  1           2345677777


Q ss_pred             HHHHHHHHHHhhccCCCC
Q 041627          156 IAVLAVVFVILFVPETQG  173 (204)
Q Consensus       156 ~~~i~~~~~~~~~~e~~~  173 (204)
                      ..++..++..++.+|...
T Consensus       217 ~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  217 LWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHHHhheeeccc
Confidence            777777777777777643

>PRK09848 glucuronide transporter; Provisional

Probab=98.91  E-value=6.5e-08  Score=76.72  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             hhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc----cchHhH-HHhhHHHHHHHHHHHHHH-
Q 041627            9 GINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF----GRKKLA-LSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~~~~~~~~~~~~~~~-   81 (204)
                      +......|++.|+++ .|++..+.+......... .++..++.|+++||.    |||+.+ ..+.+...+........+ 
T Consensus        23 ~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~-~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~  101 (448)
T PRK09848         23 AFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVF-DAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcC
Confidence            334455666666665 699999988888888777 899999999999996    777755 444443333333321111 


Q ss_pred             --------HHHHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHH
Q 041627           82 --------ISVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWI  128 (204)
Q Consensus        82 --------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~  128 (204)
                              ........+.+.+.+...+...++..|..+ +++|.+..+.......+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        102 DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence                    112222233333334444444555666654 46788776665544343

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.88  E-value=2.1e-07  Score=73.94  Aligned_cols=171  Identities=13%  Similarity=0.082  Sum_probs=118.3

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH--cCCCch------hh---hhhHHHHHHHHHHHHHHHhhhhhccccc-hHhHHHhhHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM--AGFQSN------QL---ALLPSLVVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGV   70 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--~g~~~~------~~---~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~   70 (204)
                      .++.+.+++.+..|.+.+..+  ++.++.      +.   +.+..........+.+++..++.+|+|+ |+....+.++.
T Consensus       267 qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~  346 (477)
T TIGR01301       267 TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIIL  346 (477)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            456777788888888877664  443321      11   3344444444456777788899999985 67667777776


Q ss_pred             HHHHHHHHHHH-----------------------HHHHHHHHHHHHhcccccccchhhcccccCC--cchhhhhhHHHHH
Q 041627           71 IISLVLLSWAF-----------------------ISVIGLALYITFFAPGMGPVPWTVNSEVYRE--QYRGICGGMSATV  125 (204)
Q Consensus        71 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~  125 (204)
                      .++.....+..                       ...+......|+.-....++.++++++..|+  +..|..+|+.|.+
T Consensus       347 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~  426 (477)
T TIGR01301       347 AICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA  426 (477)
T ss_pred             HHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence            66666554322                       2344455566666677778899999999985  4559999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhC--cchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          126 NWISNLIVAQNFLTVADLVG--TGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       126 ~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      ..+.+++.....+.+.+..|  ....+.+.++..+++.+...+.+|+++.
T Consensus       427 I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       427 IVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999998888777666666  3345666666677777888888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.88  E-value=1e-08  Score=60.68  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=57.7

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhH
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLA   68 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   68 (204)
                      +|..+.+...+.+|.|.+.++.|++..+.+.+.++.... ..++.+++|.++||++|++..+....
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~-~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLI-RFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            566788888999999999999999999999988888888 89999999999999999988766544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.85  E-value=1.9e-08  Score=80.13  Aligned_cols=122  Identities=8%  Similarity=-0.079  Sum_probs=93.0

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH----------H--HHHHHHHHH
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA----------F--ISVIGLALY   90 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~   90 (204)
                      ..|+++.+.+......... .+++....+++.+|++.|+.+.++.++..++.......          .  ........+
T Consensus       282 ~lG~s~~~~G~~~~~~~v~-~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLG-SLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             cCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            4788999988887777655 89999999999999999999988888777765432210          0  111222233


Q ss_pred             HHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           91 ITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        91 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      .....+........++.+..|++.+|+.+++.....++|..+++.+.+.+.+..|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3334344445557899999999999999999999999999999999998888877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.8e-08  Score=80.15  Aligned_cols=149  Identities=20%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHhHHHhhHHHHHHH-HH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKLALSSLAGVIISL-VL   76 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~~~~~~~~~~~-~~   76 (204)
                      .++.....+++.+|+|.++++ .|++..+... +++...++++++.+++|+++||    ..+|........+..+.. ..
T Consensus       282 ~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~-ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~  360 (495)
T KOG2533|consen  282 YFFLKLVNYGFSYWLPLYLKSNGGYSELQANL-LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAIS  360 (495)
T ss_pred             HHHHhhccccHHHHHHHHHHcCCCcChHHhcc-ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666678999999999998 5688877554 4555555589999999999999    556655555444433333 22


Q ss_pred             HHHHH-HHHHHHHHHHH-HhcccccccchhhcccccCCcch-hhhhhHHHHHHHHHHHHHHHHHHH-HHHhhCcchhhhH
Q 041627           77 LSWAF-ISVIGLALYIT-FFAPGMGPVPWTVNSEVYREQYR-GICGGMSATVNWISNLIVAQNFLT-VADLVGTGSTFLI  152 (204)
Q Consensus        77 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~r-~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~  152 (204)
                      +.... .......++.+ .......+......++....+.| .+..+........++.++|.+... ....++|...|..
T Consensus       361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  361 LLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            22222 11111112222 22223334555666666655544 344445555555556665555432 2333566666643

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1e-07  Score=72.59  Aligned_cols=148  Identities=17%  Similarity=0.173  Sum_probs=109.6

Q ss_pred             hhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHH
Q 041627            8 TGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVI   85 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~   85 (204)
                      ..--....|++.+..+ .|.++.+.+...+....+ ..+|.+++.++..|+...+.+....++..+.++...... ...+
T Consensus       250 G~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~-~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~  328 (422)
T COG0738         250 GAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVG-FMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL  328 (422)
T ss_pred             hHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            3345678899999998 777888867766766666 899999999999999999988877766665555555544 4445


Q ss_pred             HHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHH
Q 041627           86 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAV  158 (204)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (204)
                      ....+.+.+.+..+|..++...+..| ++- ...|.......+|+.+.|++.|++.|..|....+.....+|.
T Consensus       329 ~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~  399 (422)
T COG0738         329 YALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY  399 (422)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            55667788888899999999999998 332 344555555668899999999999999987666553333333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.81  E-value=5.5e-08  Score=74.41  Aligned_cols=129  Identities=13%  Similarity=-0.019  Sum_probs=93.2

Q ss_pred             HHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc-----chHhHHH-hhHHHHHHHHHHHHHH------------
Q 041627           20 IVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG-----RKKLALS-SLAGVIISLVLLSWAF------------   81 (204)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~~~------------   81 (204)
                      +..|++......+.........  .+..+..|+.+|+.+     ||..+++ +......+..+..+..            
T Consensus         6 MIvEL~vpA~lv~~lval~~~~--ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLV--APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHH--HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            3456777777666666666555  678999999999998     7776655 4444444444433321            


Q ss_pred             ------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627           82 ------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTF  150 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  150 (204)
                            ......+.+.+.+.+...+...++++|..|+++|+++.++....-.+|.+++..+.+.+.+.+......
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence                  122334455566666667778899999999999999999999999999999999999988877643333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.77  E-value=2.6e-07  Score=72.48  Aligned_cols=163  Identities=18%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             hhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHhH-HHhhHHHHHHHHHHHHHH-
Q 041627            9 GINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKLA-LSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~-~~~~~~~~~~~~~~~~~~-   81 (204)
                      .......|+..+.++ .|++....+.+..+.=.. .++..++.|.++||    +||+|.. +.+.+..++...++...+ 
T Consensus        27 ~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~Rii-DAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~  105 (467)
T COG2211          27 AFGIVVLYLLFFYTDVFGLSAALAGTIFLVARII-DAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD  105 (467)
T ss_pred             HHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH-HHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence            345566777777666 899999888777777666 89999999999996    6776664 455566666655554433 


Q ss_pred             -------HHHHHHHHHHHHhcccccccchhhcccccC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------Cc
Q 041627           82 -------ISVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICGGMSATVNWISNLIVAQNFLTVADLV-------GT  146 (204)
Q Consensus        82 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~  146 (204)
                             ....+...+.+.+-....-...++.+|+.+ +++|.+..+.-..+..+|+.+...+.+.+....       ||
T Consensus       106 ~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~  185 (467)
T COG2211         106 FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY  185 (467)
T ss_pred             cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence                   222333334444444445555577778764 788999999999999999888888877776654       34


Q ss_pred             chhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          147 GSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       147 ~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      +....+.+++..+..+.+++-.+|+.
T Consensus       186 ~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         186 QGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            44455555555556556666666653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=5.9e-07  Score=70.01  Aligned_cols=132  Identities=15%  Similarity=0.099  Sum_probs=81.3

Q ss_pred             hhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH-HHH---H-H
Q 041627            9 GINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL-SWA---F-I   82 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~~~---~-~   82 (204)
                      +...+..+.+.+.++ +|.++.+.+........+ ..++.++.+++.||.+++................. ...   . +
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPA-AFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVW  300 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            334444556666666 788888766665554444 67788888888888874332221211111111111 111   0 2


Q ss_pred             HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627           83 SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD  142 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (204)
                      .......+.+.+.+...+....+..|..| ++++++.++.+....+|+.+++.+.+.+..
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        301 TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            23333444455555566777778888887 578999999999989999999988876544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.68  E-value=1.1e-06  Score=59.29  Aligned_cols=137  Identities=12%  Similarity=0.095  Sum_probs=100.4

Q ss_pred             hhhhhhhhhhhHHhhhHHHHHHcCCCc-----hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHH
Q 041627            2 QAFQQFTGINTVMYYSPTIVQMAGFQS-----NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL   76 (204)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   76 (204)
                      .+++.++++........++.++.+.++     +..+............+.+++.+.+.+++|.|+.+.++.+...+-...
T Consensus         4 ~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~   83 (156)
T PF05978_consen    4 GFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS   83 (156)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            466778888888777777776654431     222554444445547889999999999999999999988877765544


Q ss_pred             HHHHH-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041627           77 LSWAF-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFL  138 (204)
Q Consensus        77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~  138 (204)
                      ..... +.+.....+.|.+.+..+...-.++.+...++.|++..++.......+.++|+...-
T Consensus        84 ~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   84 FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            43332 556666677788888888777789999999999999999888887777666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.67  E-value=8.8e-07  Score=70.63  Aligned_cols=136  Identities=17%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhhhhhccccchHhHHHhh-HHHHHHHHHHHHHH---H-HHHHHHHHHHHhcccccccchhhcccccCC
Q 041627           38 VVAGTNAVGTIVGIYLIDHFGRKKLALSSL-AGVIISLVLLSWAF---I-SVIGLALYITFFAPGMGPVPWTVNSEVYRE  112 (204)
Q Consensus        38 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  112 (204)
                      ......++..++.|.++|+-|+||.++... .+..++...+.+..   + ...++..+...+.........+++.|+.++
T Consensus        78 is~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~  157 (477)
T PF11700_consen   78 ISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARP  157 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Confidence            334447889999999999998877766544 44444555444433   2 222233333334444456677899999998


Q ss_pred             cch--------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------CcchhhhHHHHHHH
Q 041627          113 QYR--------------------------GICGGMSATVNWISNLIVAQNFLTVADLV--------GTGSTFLILAGIAV  158 (204)
Q Consensus       113 ~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  158 (204)
                      +.+                          ++..+.....+.+|+.+.-.+.-.+....        +.|..+.+.++..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~  237 (477)
T PF11700_consen  158 EPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWL  237 (477)
T ss_pred             ChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence            888                          89999999999999887666554333222        23556666677766


Q ss_pred             HHHHHHHhhccCCCC
Q 041627          159 LAVVFVILFVPETQG  173 (204)
Q Consensus       159 i~~~~~~~~~~e~~~  173 (204)
                      +..+..++++||.++
T Consensus       238 vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  238 VFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHhCCCCCC
Confidence            776777777888754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.65  E-value=7.7e-07  Score=70.31  Aligned_cols=154  Identities=19%  Similarity=0.140  Sum_probs=103.3

Q ss_pred             hhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-----cchHhHHHhhHHHHHHHHHHHHHH------HH
Q 041627           15 YYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-----GRKKLALSSLAGVIISLVLLSWAF------IS   83 (204)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~------~~   83 (204)
                      ...|.+.+++|.++.+.+.+.+....-  -...++.|.++|-+     .||+-++++.++..++...+...+      ..
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP--w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLP--WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCc--hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            344556677999999876655554333  45789999999986     355555666666654444444322      22


Q ss_pred             HHHHHHHHHHhcccccccchhhcccccC--CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           84 VIGLALYITFFAPGMGPVPWTVNSEVYR--EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      .....++...+........-+...|...  ++.|+...+.......+|++++..+.|.+.+..+++..|.+.+.+..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            2223333334444444566677777763  23378888888888899999999999999999998888888887877776


Q ss_pred             HHHHhhccC
Q 041627          162 VFVILFVPE  170 (204)
Q Consensus       162 ~~~~~~~~e  170 (204)
                      +...+..+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence            666666666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.60  E-value=2.4e-06  Score=69.39  Aligned_cols=133  Identities=13%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             hhhhhhHHhhhHHHHHH-cCCCch---hhhhhHHHHHHHHHHHHHHHhhhhhccccchHh-HHHhhHHHHHHHHHHHHHH
Q 041627            7 FTGINTVMYYSPTIVQM-AGFQSN---QLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKL-ALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+-++....+.|+.... ++-+..   ..++.......+ ...++++.|.+..+++|-|. ++.+...+.+++-.+....
T Consensus       323 G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg-~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~  401 (599)
T PF06609_consen  323 GMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG-SCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR  401 (599)
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH-HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc
Confidence            33456666666766554 444332   223333444444 67888999999998887554 4455555554434443332


Q ss_pred             ----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041627           82 ----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV  140 (204)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  140 (204)
                          ........+.+.+.+...........-..|+++-+++.++......+|+.++..++..+
T Consensus       402 ~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  402 PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                23344455556655555556666667778999999999999999999998888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.59  E-value=7.6e-06  Score=64.37  Aligned_cols=153  Identities=13%  Similarity=0.031  Sum_probs=82.0

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH----
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW----   79 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----   79 (204)
                      ......+.+..+.|.+.++ .|.++.+.++.......+ ..++..+.+.+.+|..+++.......+..++......    
T Consensus       229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~  307 (413)
T PRK15403        229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGA-VIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL  307 (413)
T ss_pred             HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667778988876 588888877665444444 6777777777654444433322222222222222111    


Q ss_pred             HH--H-HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHH
Q 041627           80 AF--I-SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGI  156 (204)
Q Consensus        80 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (204)
                      ..  + .......+.+.+.+...+...... ..-....+|++.++.+.....+...++...+++.+. +-..++.....+
T Consensus       308 ~~~~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        308 WPHVWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            11  1 122233333333333334433212 111233478899999988888888888888876555 445566555544


Q ss_pred             HHHH
Q 041627          157 AVLA  160 (204)
Q Consensus       157 ~~i~  160 (204)
                      ..+.
T Consensus       386 ~~~~  389 (413)
T PRK15403        386 AGVI  389 (413)
T ss_pred             HHHH
Confidence            4433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.53  E-value=1.7e-07  Score=73.81  Aligned_cols=153  Identities=13%  Similarity=0.085  Sum_probs=118.0

Q ss_pred             hhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHH
Q 041627            9 GINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIG   86 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~   86 (204)
                      +...+.+++=..+++.+..+...+ ..++....+.++.-++.+++.+|+|+-+++..++....+=...+....  |..+.
T Consensus       386 g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP  464 (618)
T KOG3762|consen  386 GVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP  464 (618)
T ss_pred             HHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee
Confidence            334455566556778876666555 556666666888999999999999999999888877776655555554  66666


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVN-WISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVV  162 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  162 (204)
                      +-++.+......+....+|++...|++.|+++.++..... .+|--+|..++|.+...++-+..|..+++.+++.++
T Consensus       465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            7788888888888888899999999999999999877654 566778888888888888888888887777665544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.47  E-value=2e-06  Score=66.67  Aligned_cols=119  Identities=12%  Similarity=-0.025  Sum_probs=83.0

Q ss_pred             cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--------H--HHHHHHHHHHH
Q 041627           24 AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--------I--SVIGLALYITF   93 (204)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~   93 (204)
                      +| +... ..+.++.....+++..+.+-|+.||+|-|...+++....+++..+-..+.        +  .....-.+.+.
T Consensus        75 Yg-s~~~-~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~  152 (480)
T KOG2563|consen   75 YG-SSSA-ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA  152 (480)
T ss_pred             hc-chHH-HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH
Confidence            45 4433 44555555555899999999999999999999999999988887754443        1  11112222222


Q ss_pred             hcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041627           94 FAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV  144 (204)
Q Consensus        94 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  144 (204)
                      ..-.......-...-+||+++|+.+..+..+.+.+|..++-.+.+.+..+.
T Consensus       153 Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  153 AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            233333444456677899999999999999998899888888777766544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.46  E-value=1.3e-05  Score=59.41  Aligned_cols=141  Identities=22%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             hhHHhhhHHHHHHcCCCc--hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH----HHHH
Q 041627           11 NTVMYYSPTIVQMAGFQS--NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA----FISV   84 (204)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~~~   84 (204)
                      .......+.+..+.+.+.  ...+...+..... ..++.++.|.++||+|||+.+..+......+.......    ....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (338)
T COG0477          19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLG-YAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALL   97 (338)
T ss_pred             chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH-HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            344556677777776665  3456666666666 67788999999999999987777665433332222221    1344


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCC-cchhhhhhHHHH-HHHHHHHHHHHHHHHHHHh--hCcchhhhH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICGGMSAT-VNWISNLIVAQNFLTVADL--VGTGSTFLI  152 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--~~~~~~~~~  152 (204)
                      ...+...+...+...+....+..|..|+ ++|+...+.... ...++..+++.+.+.+...  .+|+..+..
T Consensus        98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            4445545666666677888999999988 678888888877 4666777777665555443  457664443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.45  E-value=8.6e-06  Score=65.26  Aligned_cols=105  Identities=14%  Similarity=0.038  Sum_probs=78.7

Q ss_pred             HHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHH
Q 041627           64 LSSLAGVIISLVLLSW-----------AFISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLI  132 (204)
Q Consensus        64 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  132 (204)
                      .++.++..++......           ..++++....+.+.+.....|....+..|..|++.||+.+|+......+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666555543           11566777778888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhc
Q 041627          133 VAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      ++.+.....+..+|...+...+...++..++.++..
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            888887666666776666666666665555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.34  E-value=3.8e-06  Score=67.47  Aligned_cols=98  Identities=10%  Similarity=0.008  Sum_probs=73.5

Q ss_pred             HHHHHHHhhhhhccccchHh-------HHHhhHHHHHHHHHHH-----HH-------HHHHHHHHHHHHHhcccccccch
Q 041627           43 NAVGTIVGIYLIDHFGRKKL-------ALSSLAGVIISLVLLS-----WA-------FISVIGLALYITFFAPGMGPVPW  103 (204)
Q Consensus        43 ~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~  103 (204)
                      .++..++.+++.||++||+.       +.++.++..++.+.+.     ..       .+++....++.+.+.....+...
T Consensus       322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~  401 (489)
T PRK10207        322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGL  401 (489)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence            45777888999999999863       5566666555543221     11       14455566777788888888888


Q ss_pred             hhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041627          104 TVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTV  140 (204)
Q Consensus       104 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  140 (204)
                      .++.+..|++.++.++|+......+|+.++..+....
T Consensus       402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998889988888777543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.31  E-value=7.9e-06  Score=63.42  Aligned_cols=124  Identities=15%  Similarity=0.217  Sum_probs=83.7

Q ss_pred             HHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchH-hHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 041627           21 VQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAF------ISVIGLALYITF   93 (204)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~   93 (204)
                      +...|++....|......... +++++.+.|.+.||.+.-+ ++++......++........      +.+.......+.
T Consensus       293 l~~sgY~~~~aG~ig~l~iv~-Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  293 LCPSGYEGVFAGYIGALMIVA-GMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             cccccCCccccchhHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            334567765545554444444 8999999999999987544 33333333333322222111      445566677788


Q ss_pred             hcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           94 FAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        94 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      +..+..|+..-+..|..-|..-++..|+.+..+.+-+++-...-+...+..+
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            8888999999999998655556678999999888888877777777776665

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.30  E-value=5.9e-06  Score=66.61  Aligned_cols=94  Identities=7%  Similarity=-0.108  Sum_probs=70.5

Q ss_pred             HHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcccccccchhhcccccCCc
Q 041627           45 VGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-----------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ  113 (204)
Q Consensus        45 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  113 (204)
                      +.....+++.||.+.++.+.++.++..++...+....           ++......+.+.+.....|....++.+..|++
T Consensus       335 ~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~  414 (500)
T PRK09584        335 ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR  414 (500)
T ss_pred             HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH
Confidence            3344456677777766777888888887776654432           35666677788888888899999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHH
Q 041627          114 YRGICGGMSATVNWISNLIVAQNFL  138 (204)
Q Consensus       114 ~r~~~~~~~~~~~~~g~~~~~~~~~  138 (204)
                      .||+.+|.......+++.+++.+..
T Consensus       415 ~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        415 LMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887766677776666654

>PTZ00207 hypothetical protein; Provisional

Probab=98.20  E-value=3.5e-05  Score=62.91  Aligned_cols=162  Identities=13%  Similarity=0.091  Sum_probs=102.4

Q ss_pred             hhhhhHHhhhHHHHHHc-CCCc-hhhhh-hHHHHHHHHHHHHHHHhhhhhccccchH--------h-HHHhhHHHHHHHH
Q 041627            8 TGINTVMYYSPTIVQMA-GFQS-NQLAL-LPSLVVAGTNAVGTIVGIYLIDHFGRKK--------L-ALSSLAGVIISLV   75 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-g~~~-~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~--------~-~~~~~~~~~~~~~   75 (204)
                      ..-..+..-+-++.+.+ |.+. ++... +.+..... +.+|.+..|+++....||+        . +.+..+ +.++.+
T Consensus       367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~-~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~l  444 (591)
T PTZ00207        367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVG-SAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITML  444 (591)
T ss_pred             CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHH-HHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHH
Confidence            33345555667778888 6623 32122 44444444 8999999998873322222        2 222222 333333


Q ss_pred             HHHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHhh--------
Q 041627           76 LLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIV-AQNFLTVADLV--------  144 (204)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~--------  144 (204)
                      ++....  ..+.+..++.+++.+..+++.....+|+|. ++-|+-+.+......+|+.+- ..++|.+.|.-        
T Consensus       445 ll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~  523 (591)
T PTZ00207        445 TLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDV  523 (591)
T ss_pred             HHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence            333322  456677788888888899999999999999 888877777777777777654 55666666532        


Q ss_pred             -----CcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          145 -----GTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       145 -----~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                           .++.+|++.++++.++.+......-+++
T Consensus       524 C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        524 CTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             eCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence                 2567888888888888776555444553

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.08  E-value=4.8e-07  Score=73.13  Aligned_cols=164  Identities=17%  Similarity=0.062  Sum_probs=1.6

Q ss_pred             hhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----
Q 041627            6 QFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----   81 (204)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----   81 (204)
                      |.+....+..-++++-++++++..+.+.+.+..-.. ..+..++..++.+|-.|-+.+-.+.++++++.++++.-.    
T Consensus        15 q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~-~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~   93 (539)
T PF03137_consen   15 QMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIG-SLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG   93 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence            333333444555677778999999989888888777 789999999999997776667777777777766653211    


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhcccccccchhhcccccCCc
Q 041627           82 ------------------------------------------------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ  113 (204)
Q Consensus        82 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  113 (204)
                                                                      ..+++.-++.|++....++...+|+=|..+++
T Consensus        94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~  173 (539)
T PF03137_consen   94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK  173 (539)
T ss_dssp             ----------------------------------------------------------SSS-------------------
T ss_pred             CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence                                                            11222234445555566788889999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------------------hC-cchhhhHHHHHHHHHHHHHHhhccCC
Q 041627          114 YRGICGGMSATVNWISNLIVAQNFLTVADL---------------------VG-TGSTFLILAGIAVLAVVFVILFVPET  171 (204)
Q Consensus       114 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~i~~~~~~~~~~e~  171 (204)
                      +-+...|+......+|-.+|-.+++...+.                     .| ||..|++.+.+.++..+.. +..|+.
T Consensus       174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~  252 (539)
T PF03137_consen  174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKK  252 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCcc
Confidence            998889988888777777665555544321                     13 6666666666665554433 334443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.04  E-value=0.00024  Score=56.63  Aligned_cols=114  Identities=7%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH---------------------------
Q 041627           29 NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF---------------------------   81 (204)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---------------------------   81 (204)
                      +...++-+.......++..++.+++++|++|++.+-...........++.+..                           
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            44555555554443445588899999999999987765555544444333220                           


Q ss_pred             ------HHHHHHHHHHHHhcccccc-cchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627           82 ------ISVIGLALYITFFAPGMGP-VPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD  142 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (204)
                            |............+....+ ..|.+++|++..++-.+-+++...++++|.++++.+..++.+
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1122233333444444555 778999999999999999999999999999999998877663

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.97  E-value=0.00012  Score=43.90  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             hhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            8 TGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+=+.+++.+|.+.++.++|.++.+++.+.-..+ ..+|++...++.++.++++.+..+.+...+..+.+....
T Consensus         6 igRFayTplLP~M~~~~~ls~~~ag~lasaNy~G-YL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQADGGLSLSQAGWLASANYLG-YLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3457889999999999999999977776666666 999999999999998888888888888888877776654

Note that many members are hypothetical proteins.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.96  E-value=6.8e-05  Score=58.60  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=76.1

Q ss_pred             hHHhhhHHHHHH----cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccch----HhHHHhhHHHHHH-------HHH
Q 041627           12 TVMYYSPTIVQM----AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK----KLALSSLAGVIIS-------LVL   76 (204)
Q Consensus        12 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~~~~-------~~~   76 (204)
                      ++..|.|.+...    .|.+..+ +++.......++.+|.+++|.++||+-|+    ....+.......+       ..+
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~-~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~  340 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNA-TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL  340 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCcccc-chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence            445555655443    3545444 66666666666899999999999994321    1111111111111       111


Q ss_pred             HHHHH---HHHHHHHHHHHHh-cccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHH-HHHHHHHhh-Ccc
Q 041627           77 LSWAF---ISVIGLALYITFF-APGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQ-NFLTVADLV-GTG  147 (204)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~  147 (204)
                      .....   .......++.+.. .....+....+..|+.|+++|.+++++......+.+-.+++ +.|.+.+.. +|+
T Consensus       341 ~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  341 FPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            11111   1122222222222 22334555677889999999999999998887776655444 888887764 444

>TIGR01272 gluP glucose/galactose transporter

Probab=97.93  E-value=2e-05  Score=59.60  Aligned_cols=90  Identities=11%  Similarity=0.043  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----------------hC
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL----------------VG  145 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~  145 (204)
                      ...++..++.+.+.+...+....+++++.|++++++..++...++.+|..++|.+.+.+...                ..
T Consensus        11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~   90 (310)
T TIGR01272        11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAK   90 (310)
T ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHH
Confidence            34555566667777777888999999999999999999999999999999999999977632                35


Q ss_pred             cchhhhHHHHHHHHHHHH-HHhhccCC
Q 041627          146 TGSTFLILAGIAVLAVVF-VILFVPET  171 (204)
Q Consensus       146 ~~~~~~~~~~~~~i~~~~-~~~~~~e~  171 (204)
                      |+.+++..+.+..+..+. .....||.
T Consensus        91 ~~~~yl~ia~~~~~~~i~~~~~~~p~~  117 (310)
T TIGR01272        91 VHTPYLLLAGALAVLAIIFAFLPLPEL  117 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            777887666554444333 23334554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.86  E-value=0.00089  Score=52.22  Aligned_cols=156  Identities=12%  Similarity=0.080  Sum_probs=92.2

Q ss_pred             hhhHHHHHH--cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHH
Q 041627           15 YYSPTIVQM--AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALY   90 (204)
Q Consensus        15 ~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   90 (204)
                      +|+..|+.+  .|+++++...-+.-...=......++...+.|.+|-|++++...+...+...++.+..  ..+-+.-++
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            344445543  6888877554333222222567788889999999999999888777666666555544  333333334


Q ss_pred             HHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhhHHHHHHHHHHHHHHhhc
Q 041627           91 ITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG--TGSTFLILAGIAVLAVVFVILFV  168 (204)
Q Consensus        91 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~  168 (204)
                      .|..... -...++|+--..|+++=-++.+.......+|.+++..++..+...-+  +....++......++. +..+++
T Consensus       104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fL  181 (412)
T PF01770_consen  104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFL  181 (412)
T ss_pred             HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHc
Confidence            3333322 33445666666677776778888888887887877777765554333  2223333333333333 334456


Q ss_pred             cCCC
Q 041627          169 PETQ  172 (204)
Q Consensus       169 ~e~~  172 (204)
                      |..+
T Consensus       182 P~~~  185 (412)
T PF01770_consen  182 PMPK  185 (412)
T ss_pred             CCCC
Confidence            6543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.81  E-value=2.8e-05  Score=61.80  Aligned_cols=66  Identities=8%  Similarity=0.052  Sum_probs=56.2

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGV   70 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   70 (204)
                      +....+...+.+.++.+.+++|+++.+.+.+..+...+ .+++.+++|+++||+.+||.++++..+.
T Consensus        21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v-~~L~~P~~g~~Adr~r~~r~lllgsl~~   86 (618)
T KOG3762|consen   21 LFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLV-EFLAAPLWGFLADRYRKRRPLLLGSLLL   86 (618)
T ss_pred             eeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCchhHHHHHH
Confidence            34456677889999999999999999999999999999 8999999999999998877766654433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.78  E-value=0.0046  Score=48.02  Aligned_cols=119  Identities=13%  Similarity=0.068  Sum_probs=87.7

Q ss_pred             cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc-cccchHhHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccc
Q 041627           24 AGFQSNQLALLPSLVVAGTNAVGTIVGIYLID-HFGRKKLALSSLAGVIISLVLLSWAF-----ISVIGLALYITFFAPG   97 (204)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   97 (204)
                      +|++..+...+......+ ..+|....|++.. |.++|+.-.+++....++...+..+.     +.+....++.+++.+.
T Consensus       239 fgmsv~eTT~Lta~~~~G-~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGG-TLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             cCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence            788988855555555444 7888888888877 67888877778877777766655443     3444445555666665


Q ss_pred             ccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           98 MGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        98 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                      +....-+..-+..++++.|..+|.....+.+...++..+.+.+.|.
T Consensus       318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555667788888899999999999999988888888888877764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.67  E-value=4.3e-05  Score=59.53  Aligned_cols=128  Identities=10%  Similarity=0.008  Sum_probs=89.8

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc----ccchHhHHHh-hHHHHHHHHHHHHHH---
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH----FGRKKLALSS-LAGVIISLVLLSWAF---   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~~~-~~~~~~~~~~~~~~~---   81 (204)
                      +-.-..|.|.|.++.|.+....+......... +.+-+++.|..+||    +||||.++.. .....++.+++.+..   
T Consensus        48 wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~-G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig  126 (498)
T KOG0637|consen   48 WALELSYLTPYLQSLGVPHKWSSIIWLCGPLS-GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG  126 (498)
T ss_pred             HHHHhccccHHHHHcCCCcccccccccccccc-cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence            34456788889999999988877776666666 68899999999996    7888876654 444555555554432   


Q ss_pred             ----------------HHHHHHHHHHHHhcccccccchhhcccccCCcchhh-hhhHHHHHHHHHHHHHHHHHH
Q 041627           82 ----------------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI-CGGMSATVNWISNLIVAQNFL  138 (204)
Q Consensus        82 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~~g~~~~~~~~~  138 (204)
                                      ...++..-+.-.........+-+++.|+..++++.+ +.++...+..+|+.++-.+.+
T Consensus       127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence                            112222233344555677788899999998777777 888888887788777555444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.66  E-value=0.00053  Score=56.95  Aligned_cols=157  Identities=16%  Similarity=0.072  Sum_probs=110.8

Q ss_pred             hhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-------------
Q 041627           15 YYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-------------   81 (204)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------------   81 (204)
                      .-..++=+.+++++++.+.+.+..-.+ ..+...+..+...|..|-+.+-++.++++++.++..+-.             
T Consensus       118 s~IttiErRF~i~Ss~sG~I~s~~dig-~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  118 SVITTIERRFKISSSQSGLIASSYDIG-NLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhhhhhcCCCCCcceeEeeecccc-hhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            334444456899998878877777777 788899999999998888888888888888877765421             


Q ss_pred             ----------------------------------------H-HHHHHHHHHHHhcccccccchhhcccccCCcchhhhhh
Q 041627           82 ----------------------------------------I-SVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGG  120 (204)
Q Consensus        82 ----------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  120 (204)
                                                              + .+++.-++.|++....++...+|+=|...+++-....|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                                                    0 12222344455566667888899999999998888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------------------hC-cchhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          121 MSATVNWISNLIVAQNFLTVADL------------------VG-TGSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       121 ~~~~~~~~g~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      +......+|-++|-.+++.+...                  .| ||..|++.+.+.++..+. +++.|++..
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp  347 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKELP  347 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCcccCc
Confidence            98888888877776666665432                  12 566677777777666554 445566543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.57  E-value=1.8e-05  Score=58.23  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcc
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWA-----FISVIGLALYITFFAP   96 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   96 (204)
                      +.+.+.++..++.+.+.+- ..+-++++|++.|| +|-|...++-+....++-++.+.-     .+.+...+++.++++-
T Consensus        73 d~ni~~akftLlYsvYSwP-NvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE  151 (459)
T KOG4686|consen   73 DSNIEYAKFTLLYSVYSWP-NVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE  151 (459)
T ss_pred             ccccceeeeeeeeeeccCC-CEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch
Confidence            3455555666677777777 88899999999996 566654444343334444333221     1667777777777776


Q ss_pred             cccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041627           97 GMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV  144 (204)
Q Consensus        97 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  144 (204)
                      .....-..|..-++..++-+.++|+.....++|+.+--.+.+++.+..
T Consensus       152 SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  152 SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            666777889999999999999999999999999876555555555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.00017  Score=55.53  Aligned_cols=130  Identities=14%  Similarity=0.032  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhccccchH--hHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccc---chhhccc
Q 041627           36 SLVVAGTNAVGTIVGIYLIDHFGRKK--LALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPV---PWTVNSE  108 (204)
Q Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~grr~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~e  108 (204)
                      -....+...+++.+.|.++||++.-+  ....+.++...++....+..  ..+++..+..+.......+.   ...++.|
T Consensus       312 fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd  391 (464)
T KOG3764|consen  312 FLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVD  391 (464)
T ss_pred             ecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcc
Confidence            33444458899999999999999433  33333444443333344433  23333333333332222222   2233333


Q ss_pred             ccCCc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHH
Q 041627          109 VYREQ---YRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus       109 ~~p~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      .-..+   .-|..+++......++..++|.+.+.+.+..|++|...+.++..++..-++.
T Consensus       392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            33333   4578888999999999999999999999999998888888887777655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.50  E-value=0.0039  Score=49.84  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=95.5

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhh-hhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccc
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGI-YLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVIGLALYITFFAPGMGP  100 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  100 (204)
                      .+++++.+.+.+.+..... +.++.++.. .+...+|-|+....++..-.+.....++.. .+.+..............+
T Consensus       271 ~f~w~~~~~s~~~~~~~~~-~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~p  349 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSIL-GIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFP  349 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhH
Confidence            3688999888887777777 677777776 777888989888888888888777777766 3444444555556666777


Q ss_pred             cchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041627          101 VPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV  144 (204)
Q Consensus       101 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  144 (204)
                      ...+..+...++++||++.++......+.+.++|.+.+.+...+
T Consensus       350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            77889999999999999999999999999999999988776543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.44  E-value=0.014  Score=45.57  Aligned_cols=137  Identities=15%  Similarity=0.015  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccchHhHHHh-hHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccccccchhhccc
Q 041627           35 PSLVVAGTNAVGTIVGIYLIDHFGRKKLALSS-LAGVIISLVLLSWAF-----ISVIGLALYITFFAPGMGPVPWTVNSE  108 (204)
Q Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e  108 (204)
                      .++.... ..+-+++.|.++|+.|+||..... ..+..+..+.+.+.+     +.......+...+.........+++.+
T Consensus        64 ~aia~ll-ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~  142 (438)
T COG2270          64 SAIAGLL-IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPR  142 (438)
T ss_pred             HHHHHHH-HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhh
Confidence            3444444 677888999999999977765544 444444444454443     333444445555555666677899999


Q ss_pred             ccCCcchhhhhhHHHHHHHHHHHHHHHHHH--HHH----------------HhhCcchhhhHHHHHHHHHHHHHHhhccC
Q 041627          109 VYREQYRGICGGMSATVNWISNLIVAQNFL--TVA----------------DLVGTGSTFLILAGIAVLAVVFVILFVPE  170 (204)
Q Consensus       109 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  170 (204)
                      ..++++-++..+.....+.+|+.+.-...-  ...                +...-|..+.+.++..++..+-.++..|+
T Consensus       143 ~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~  222 (438)
T COG2270         143 LTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHD  222 (438)
T ss_pred             hcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccc
Confidence            999988888888888888887765333321  111                11123556666666666666555555555


Q ss_pred             CC
Q 041627          171 TQ  172 (204)
Q Consensus       171 ~~  172 (204)
                      ..
T Consensus       223 ~~  224 (438)
T COG2270         223 AE  224 (438)
T ss_pred             cc
Confidence            43

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.37  E-value=0.00054  Score=54.39  Aligned_cols=119  Identities=8%  Similarity=0.048  Sum_probs=72.5

Q ss_pred             CCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH-----------H-HHHHHHHHHHHH
Q 041627           26 FQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA-----------F-ISVIGLALYITF   93 (204)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~   93 (204)
                      +++...+.+. ....+...+|..+....--+..-|+++....++.++..+.-...           . +..+.-..+...
T Consensus       252 fs~~f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  252 FSPSFYGTLS-IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             cCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            5666655555 44444467777777666666677777666555544433321100           0 000001111111


Q ss_pred             hcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 041627           94 FAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG  145 (204)
Q Consensus        94 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (204)
                      ......-....+.+|+.|+..-|+.+++.....++|..++..+...+.+.++
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1111222234778999999999999999999999999999999988887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.35  E-value=0.0083  Score=50.17  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc--chHhHHHhhHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG--RKKLALSSLAGVI   71 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~   71 (204)
                      ..++...+.++.+|+|.|+++ +|.+......+.........++|.+++|++..|+.  .|....+.++...
T Consensus       401 ~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  401 SVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             HHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            345677788999999999985 89999998888877777778999999999999874  4444444333333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0018  Score=49.79  Aligned_cols=121  Identities=15%  Similarity=0.053  Sum_probs=80.4

Q ss_pred             HHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc--chHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhccc
Q 041627           22 QMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG--RKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPG   97 (204)
Q Consensus        22 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   97 (204)
                      ..+|+++.+.+.+.+..... ..+.+....+..||..  -+..+.....++.-..+......  ..+.....+..+....
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~-m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLL-MLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             CccCCChhhheeeeehhhHH-HHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            45899999988887777666 5666777777777765  44444444443333333333222  2223333333444444


Q ss_pred             ccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041627           98 MGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADL  143 (204)
Q Consensus        98 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  143 (204)
                      ..+....+.....|.++||+..|+....+.++-.++|.+.|.+..+
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            4455667888899999999999999999999999999999876544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.33  E-value=0.0075  Score=47.75  Aligned_cols=126  Identities=16%  Similarity=0.128  Sum_probs=85.7

Q ss_pred             hhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--------
Q 041627           10 INTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--------   81 (204)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------   81 (204)
                      .-++...+..|+++.|+++...+..=+..... ++.+.+...++.+|+|..+.=.++......+........        
T Consensus       274 VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~-Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~  352 (432)
T PF06963_consen  274 VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVF-GLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS  352 (432)
T ss_pred             HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            44556677888888999999988777777666 899999999999999998876666665544433322211        


Q ss_pred             ----HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHH
Q 041627           82 ----ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQN  136 (204)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~  136 (204)
                          ..++....+...+.=++--...-++.|..|+++||...|+-....++...+.-.+
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                1112222222222223334455778899999999999999999888776654433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.31  E-value=0.0013  Score=51.19  Aligned_cols=104  Identities=18%  Similarity=-0.006  Sum_probs=75.7

Q ss_pred             HhHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcccccccchhhcccccCCc---chhhhhhHHHHHH
Q 041627           61 KLALSSLAGVIISLVLLSWAF-----------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ---YRGICGGMSATVN  126 (204)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~  126 (204)
                      ++++++.++..++.+++..+.           ..+.+...+...+.++.-+...++..|.++++   +|.+.+...+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            345566666666666644432           13444455567777788888889999999865   4667788889999


Q ss_pred             HHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627          127 WISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus       127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      ++|+.++....+++.+..+|...|.+.++..+++.+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999988887777765543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.20  E-value=0.029  Score=46.23  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             hhhhhHHhhhH-HHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHHHHHHH----
Q 041627            8 TGINTVMYYSP-TIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAF----   81 (204)
Q Consensus         8 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~----   81 (204)
                      .+++++..-+- .+...++.+........+..... .....+.+++++|. +||-+++.++..+..++..+.....    
T Consensus        51 ~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~-~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~  129 (571)
T KOG1237|consen   51 LAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGT-QFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPA  129 (571)
T ss_pred             HhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444433333 33445777776656666666655 78889999999996 5898988888887777755543322    


Q ss_pred             -----------------------HHHHHHHHHHHHhcccccccchhhcccccCC----cchh--hhhhHHHHHHHHHHHH
Q 041627           82 -----------------------ISVIGLALYITFFAPGMGPVPWTVNSEVYRE----QYRG--ICGGMSATVNWISNLI  132 (204)
Q Consensus        82 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~----~~r~--~~~~~~~~~~~~g~~~  132 (204)
                                             ..+.....+...+.++.-+....+-+|-+++    +.+.  .-+...+...+.|..+
T Consensus       130 l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~  209 (571)
T KOG1237|consen  130 LLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL  209 (571)
T ss_pred             cCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH
Confidence                                   0111122223335556567777888888872    2222  4566777777888888


Q ss_pred             HHHHHHHHHHhhCcchhhhHHHHHHHHHHHHH
Q 041627          133 VAQNFLTVADLVGTGSTFLILAGIAVLAVVFV  164 (204)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  164 (204)
                      +..+..+..+..+|...|.+..+...++.++.
T Consensus       210 a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  210 AQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            88888888888999988888877777665443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.20  E-value=0.011  Score=47.65  Aligned_cols=100  Identities=11%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             HHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHH--H-------------------------------HHHHHHHH
Q 041627           43 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--F-------------------------------ISVIGLAL   89 (204)
Q Consensus        43 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-------------------------------~~~~~~~~   89 (204)
                      .++...+..+++||++|++++-+..........+.++.  +                               |...+...
T Consensus        72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv  151 (491)
T PF03219_consen   72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV  151 (491)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            56777888999999999998776555554444433322  1                               11222223


Q ss_pred             HHHHhcccccc-cchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627           90 YITFFAPGMGP-VPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD  142 (204)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (204)
                      ..-..+....+ ..|.+++|+++.++-.+-+++....+++|.++++.....+.+
T Consensus       152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334 468999999999999999999999999999999998887766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.13  E-value=0.017  Score=46.64  Aligned_cols=107  Identities=10%  Similarity=0.049  Sum_probs=66.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhccccc--hH-----hHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 041627           32 ALLPSLVVAGTNAVGTIVGIYLIDHFGR--KK-----LALSSLAGVIISLVLLSWAF-----------ISVIGLALYITF   93 (204)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~   93 (204)
                      ++..+.-... -++.+++.+++=.|.+|  |.     =+.+++++..++...+....           ++++...++...
T Consensus       311 ~~~qslNp~~-ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        311 AMFQSINAFA-VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHhHhHHH-HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            3334433333 34455555555444422  21     14556666666655543211           556666777788


Q ss_pred             hcccccccchhhcccccCCcchhhhhhHHHHHH-HHHHHHHHHHHHH
Q 041627           94 FAPGMGPVPWTVNSEVYREQYRGICGGMSATVN-WISNLIVAQNFLT  139 (204)
Q Consensus        94 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~~~~~~~~~  139 (204)
                      +.....|+..+.++++.|++.|++.+|+..... .++..+++.+...
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~  436 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ  436 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999886633 4555555555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.01  Score=47.26  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=76.3

Q ss_pred             cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc---ccchHhHHHhhHHHHHHHHHHHHHH-------------------
Q 041627           24 AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH---FGRKKLALSSLAGVIISLVLLSWAF-------------------   81 (204)
Q Consensus        24 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~-------------------   81 (204)
                      .+.++.....+.++....+...+....+.+.+|   +||++.+.++..+..+..++.....                   
T Consensus       273 ~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~  352 (461)
T KOG3098|consen  273 LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPS  352 (461)
T ss_pred             ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccc
Confidence            344444444444555555567777888888865   6889988888877776666554321                   


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFL  138 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~  138 (204)
                       ....++.++.|..-....+..+.++.+.. +++|..+.++.-....+.+.++-...+
T Consensus       353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  353 YYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence             23444556666666666777888888888 677888888888877777766555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.08  E-value=0.0023  Score=53.38  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccc--hHhHHHhhHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGR--KKLALSSLAGVIISL   74 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~~~~~~~~   74 (204)
                      +.....++++..|+|.++++ +|+++.+.+.+.........+++.+++|+++||+++  |+.+..+.++..+..
T Consensus       340 ~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       340 VIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            45566778899999999885 899999888777766654468999999999999984  455555555555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.99  E-value=0.061  Score=42.73  Aligned_cols=154  Identities=11%  Similarity=-0.033  Sum_probs=79.1

Q ss_pred             HhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHH----HHHHH--------
Q 041627           14 MYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL----LSWAF--------   81 (204)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~----~~~~~--------   81 (204)
                      -+..|.++.+..-+.-...-.......+..++.++..|...||..|.+....+.+..-++...    .....        
T Consensus        22 ~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~  101 (432)
T PF06963_consen   22 EFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQ  101 (432)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence            344455555542222111222333333446778888899999999999866655443322221    11110        


Q ss_pred             --HHH---HH----HHHHHHHhccccc-ccchhhccccc--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627           82 --ISV---IG----LALYITFFAPGMG-PVPWTVNSEVY--REQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGST  149 (204)
Q Consensus        82 --~~~---~~----~~~~~~~~~~~~~-~~~~~~~~e~~--p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  149 (204)
                        ...   +.    ...+...+..+.. .+---++..+.  +++.+.+..+...-.=....+++|.+.|.+.+..+....
T Consensus       102 ~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~  181 (432)
T PF06963_consen  102 SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIA  181 (432)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Confidence              001   11    1111111111111 11111222222  344455556666666666789999999999888887777


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q 041627          150 FLILAGIAVLAVVFVILF  167 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~~~~  167 (204)
                      ..+.++..+++...-+++
T Consensus       182 ~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  182 AIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777766544443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.019  Score=45.73  Aligned_cols=134  Identities=7%  Similarity=-0.057  Sum_probs=94.6

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCC-----chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQ-----SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW   79 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~   79 (204)
                      +.+.++..-....+...+..+..     ....+............+.+++.+.+.|++|.|..+.++.............
T Consensus        20 ~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~   99 (461)
T KOG3098|consen   20 FLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF   99 (461)
T ss_pred             HHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh
Confidence            34445555445555555442221     2233555444444447899999999999999999999988887776665555


Q ss_pred             HH-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041627           80 AF-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFL  138 (204)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~  138 (204)
                      .. +.......+.|++.+..+.---.|++|..+++.+.+..++.......+.++|+....
T Consensus       100 ~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  100 PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            44 556666677777777667777799999999999999999999988888777766543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.00099  Score=49.00  Aligned_cols=152  Identities=13%  Similarity=0.018  Sum_probs=79.4

Q ss_pred             HHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcc
Q 041627           19 TIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAP   96 (204)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   96 (204)
                      .+.+.+|+...+++.+......- ..+...+.|-++||-|||+.-+.-++..+++++- -.++  ..+++.+.+.|+...
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgS-smLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTs  139 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGS-SMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATS  139 (454)
T ss_pred             eeehhcCccCCccceeeecccch-HHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHH
Confidence            34456788888878776665555 6788888899999999999866655555544431 1121  334444555544443


Q ss_pred             cccccchh-hcccccCCcchhh-------hhhHHH-HHHHHHHHHHHHHHHHHHHhhC--cchhhhHHHHHHHHHHHHHH
Q 041627           97 GMGPVPWT-VNSEVYREQYRGI-------CGGMSA-TVNWISNLIVAQNFLTVADLVG--TGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        97 ~~~~~~~~-~~~e~~p~~~r~~-------~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~  165 (204)
                      ...+..-. ++.|.-  ++|+.       .++=.. ..+.+.+++++.....+.+.++  .-.+|-..+.+..++..+..
T Consensus       140 LLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  140 LLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            33333222 344433  22321       112111 2334455556666666666654  33345443333334433333


Q ss_pred             hhccCCCCc
Q 041627          166 LFVPETQGL  174 (204)
Q Consensus       166 ~~~~e~~~~  174 (204)
                      --..|+.++
T Consensus       218 ~~W~ENygd  226 (454)
T KOG4332|consen  218 SSWSENYGD  226 (454)
T ss_pred             hhhhhccCC
Confidence            334565444

>PRK03612 spermidine synthase; Provisional

Probab=96.73  E-value=0.13  Score=42.07  Aligned_cols=135  Identities=17%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             HcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHH---HHHHHHH-H------HHHHHHHHHHH
Q 041627           23 MAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS---LVLLSWA-F------ISVIGLALYIT   92 (204)
Q Consensus        23 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~---~~~~~~~-~------~~~~~~~~~~~   92 (204)
                      -+|-+....+..++++..+ ..+|+.+++++.++.-|+.... -..+..++   ..+.... .      .......+..+
T Consensus        44 ~~G~s~~~~~~ii~~fl~g-lalGs~l~~~~~~~~~~~~~~~-e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFA-MGVGALLSKYLLRDAAAGFVAV-ELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HhCchHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577777767777777777 6888888887764332222211 11111111   1011000 0      11111222233


Q ss_pred             HhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhhHHHHHHHHH
Q 041627           93 FFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD-LVGTGSTFLILAGIAVLA  160 (204)
Q Consensus        93 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  160 (204)
                      +..+...|...-+..+.. .++-+...|-.+....+|+++|..+.+++.- .+|.....++.+.+.++.
T Consensus       122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~  189 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA  189 (521)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            333443444333333221 1223567888888899999999998877554 566544444444444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.70  E-value=0.00041  Score=56.49  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcccc--chHhHHHhhHHHHHHHHH---H
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFG--RKKLALSSLAGVIISLVL---L   77 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~---~   77 (204)
                      ..+.....++.+|+|.|+++ ++.++.+.+.+.........++|.+++|++..|+.  .|..+....+...+..+.   .
T Consensus       315 ~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~  394 (539)
T PF03137_consen  315 VFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPL  394 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566678889999999985 89999988888877777778999999999999874  344443333333322222   1


Q ss_pred             HHHH------------H-----------------------------------------HHHHHHHHHHHhcccccccchh
Q 041627           78 SWAF------------I-----------------------------------------SVIGLALYITFFAPGMGPVPWT  104 (204)
Q Consensus        78 ~~~~------------~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~  104 (204)
                      .+..            .                                         .+++..++..+...........
T Consensus       395 ~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~  474 (539)
T PF03137_consen  395 FFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL  474 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe
Confidence            1100            0                                         0001111111111122222334


Q ss_pred             hcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 041627          105 VNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLV  144 (204)
Q Consensus       105 ~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~  144 (204)
                      ..-...|+++|+.+.|+.....++ |.+-+|.++|.+.|..
T Consensus       475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------------------
T ss_pred             eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            445778899999999988877665 4566888888887754

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.46  E-value=0.021  Score=44.65  Aligned_cols=124  Identities=15%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhh
Q 041627           42 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGG  120 (204)
Q Consensus        42 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  120 (204)
                      .+.+..+...+..+|+.-+.=......+..++.+..++.. ...-++.........+.+-+...-.+..+|+.    +.+
T Consensus        71 P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~----~l~  146 (402)
T PF02487_consen   71 PSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS----SLS  146 (402)
T ss_pred             HHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc----ccc
Confidence            3567778889999987633323344445555555555543 22222333333334444444433344456543    344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCc--chhhhHHHHHHHHHHHHHHhhccC
Q 041627          121 MSATVNWISNLIVAQNFLTVADLVGT--GSTFLILAGIAVLAVVFVILFVPE  170 (204)
Q Consensus       121 ~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~e  170 (204)
                      -...+...++.+|+...-.+.. .++  +..+.....++++..+..++.+|+
T Consensus       147 ~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  147 AWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             cccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4444445567777776655554 554  446666666665544444444543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.08  E-value=0.21  Score=40.29  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=27.7

Q ss_pred             hhhHHHHHH--cCCCchhhhhhH--HHHHHHHHHHHHHH-hhhhhccccchHhHHHhh
Q 041627           15 YYSPTIVQM--AGFQSNQLALLP--SLVVAGTNAVGTIV-GIYLIDHFGRKKLALSSL   67 (204)
Q Consensus        15 ~~~~~~~~~--~g~~~~~~~~~~--~~~~~~~~~~~~~~-~g~l~dr~grr~~~~~~~   67 (204)
                      --.|.++++  .+.+-++.+...  +..... -.+-+++ =...+.|+||||..++-.
T Consensus        21 gsiPflL~~~~~~~sy~q~~~fSla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWiiP~   77 (544)
T PF13000_consen   21 GSIPFLLQSMAKKVSYSQQAIFSLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWIIPI   77 (544)
T ss_pred             ccchhhhccccCCCChhHheeeeeeechhHH-HHhhhhhhhhhcccccCCcchhhhHH
Confidence            346777777  566655544322  222222 2332222 244455899999876643

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.04  E-value=0.24  Score=38.68  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             hHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhc-----cccchHhHHHh
Q 041627           12 TVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLID-----HFGRKKLALSS   66 (204)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~grr~~~~~~   66 (204)
                      +...-.|.+++.-|.|-++.+.......   -.--.+++.++.|     |+||||..++-
T Consensus        48 GL~~~iP~lL~ak~vSyt~~a~fS~ay~---P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   48 GLIGAIPLLLQAKGVSYTSQAIFSFAYW---PFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hHhhhhHHHhcCCCcchhhhhhhhhhhh---HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            3344778888877777666454322222   1335778888889     99999986653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.58  E-value=1.9  Score=34.84  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH----------------------------
Q 041627           30 QLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF----------------------------   81 (204)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------------------------   81 (204)
                      ....+=+....=.+++..++..++.+++.|++++-+.........+++++..                            
T Consensus        62 ~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~  141 (509)
T COG3202          62 SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWF  141 (509)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceee
Confidence            3334333333323677888889999999999987766655555444443321                            


Q ss_pred             ------HHHHHHHHHHHHhcccccc-cchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041627           82 ------ISVIGLALYITFFAPGMGP-VPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD  142 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (204)
                            |.........-..+....+ ..|....|++..++-.+-+++.+..++++..+++.+..++..
T Consensus       142 ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         142 ILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             eEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  1222222333333333333 567888999999998899999999999999988888776654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.33  E-value=0.74  Score=37.13  Aligned_cols=82  Identities=10%  Similarity=-0.017  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHH------HHHhhCcchhhhHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLT------VADLVGTGSTFLILAG  155 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~  155 (204)
                      ++++...++..++.....|+...++....|++..+..+++.......+..++..+.+.      ..+.......|+..+.
T Consensus       395 ~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~  474 (498)
T COG3104         395 WWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGV  474 (498)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHH
Confidence            5667777888888888999999999999999999999998888777777777776662      2223333445666555


Q ss_pred             HHHHHHHH
Q 041627          156 IAVLAVVF  163 (204)
Q Consensus       156 ~~~i~~~~  163 (204)
                      ...+..+.
T Consensus       475 v~i~~~~~  482 (498)
T COG3104         475 VAIVIGIL  482 (498)
T ss_pred             HHHHHHHH
Confidence            55544443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.75  E-value=0.54  Score=37.07  Aligned_cols=60  Identities=15%  Similarity=0.038  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA  141 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  141 (204)
                      +..+.+.+..|..++..+...+..+.|-.|+++|-.++|.....-.+|..+++.+.-.+.
T Consensus       336 ~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  336 WIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            555566777788888888888888888889999999999999988888777777665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.09  E-value=0.46  Score=38.40  Aligned_cols=125  Identities=9%  Similarity=-0.020  Sum_probs=65.6

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCc-hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhH--HHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQS-NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLA--GVIISLVLLSWA   80 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~--~~~~~~~~~~~~   80 (204)
                      ....++++-+..|.-.+-++..-++ ...|..-.+.... +++.++..|++-.++.|-.-+.++..  +.....+++...
T Consensus       272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tll-ga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t  350 (511)
T TIGR00806       272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLL-GAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS  350 (511)
T ss_pred             HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHH-HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc
Confidence            3455677777777777766654432 2334444555555 78999999999777744333333332  223333333333


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWIS  129 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  129 (204)
                      .  +.-.+..++....-....++...-+++....+.-|..+|+......+-
T Consensus       351 ~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~L  401 (511)
T TIGR00806       351 HDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATAL  401 (511)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHH
Confidence            2  222222233333233333444455555565665677777766644333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.24  E-value=5.1  Score=32.20  Aligned_cols=29  Identities=10%  Similarity=0.125  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcc
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQY  114 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  114 (204)
                      +....+.+.+.+...+....+.+ .+|++.
T Consensus       110 ~~~v~~~g~~~~~~q~s~~gla~-~fp~~~  138 (437)
T TIGR00939       110 MASVVIINSGMALLQGSLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHhhhhhhcccchhhcc-cCCHHH
Confidence            33344445555555556666666 566543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.63  E-value=5.7  Score=31.47  Aligned_cols=19  Identities=11%  Similarity=-0.314  Sum_probs=11.2

Q ss_pred             hhhhHHhhhHHHHHHcCCC
Q 041627            9 GINTVMYYSPTIVQMAGFQ   27 (204)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~   27 (204)
                      .++.+.+-.+++.+++-.+
T Consensus        33 pWN~fiTa~~y~~~~~~~~   51 (406)
T KOG1479|consen   33 PWNMFITASDYYYYRFPGY   51 (406)
T ss_pred             chHhhhccHHHHHhhcCCC
Confidence            3556666667776665333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=87.60  E-value=0.42  Score=38.60  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             ccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHH
Q 041627          100 PVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVL  159 (204)
Q Consensus       100 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (204)
                      ....++-+|+..++++++..++.......+..++|..........|.++...+.....++
T Consensus       407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  407 TALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV  466 (488)
T ss_pred             chHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999888888888877655554444433

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=87.26  E-value=2.4  Score=28.57  Aligned_cols=81  Identities=10%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             hhhccccchHhHHHhhHHH-HHHHHHHHHHH--------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHH
Q 041627           52 YLIDHFGRKKLALSSLAGV-IISLVLLSWAF--------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMS  122 (204)
Q Consensus        52 ~l~dr~grr~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  122 (204)
                      ..+||.-||-.+..+.-.. .++.+......        ...+.+..-..+++.+..++.|..++-...+++.|...|+-
T Consensus        56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~  135 (153)
T PF11947_consen   56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE  135 (153)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence            3568887776655543222 22222211111        11222233334444555667788888888888899999988


Q ss_pred             HHHHHHHHHH
Q 041627          123 ATVNWISNLI  132 (204)
Q Consensus       123 ~~~~~~g~~~  132 (204)
                      ..-.+++-+.
T Consensus       136 e~~~N~~r~~  145 (153)
T PF11947_consen  136 EFKRNWGRMW  145 (153)
T ss_pred             HHHHhHHHHH
Confidence            8877766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=87.21  E-value=10  Score=30.20  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=39.9

Q ss_pred             hhhhhhhhhHHhhhHHHHHHc---CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhh
Q 041627            4 FQQFTGINTVMYYSPTIVQMA---GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSL   67 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   67 (204)
                      ....+|++-+..|...+-++.   +-.....|..-...... +.++.+..|++..++.+-.-+.++.
T Consensus       257 a~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tll-gA~~al~~g~v~~~w~~~~~l~l~~  322 (412)
T PF01770_consen  257 AFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLL-GAIAALLAGYVKVNWDRWGELALGV  322 (412)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHH-HHHHHHHHhHhhcchHHHHHHHHHH
Confidence            345667777777777777766   22333335555555555 7889999999977777655444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.71  E-value=19  Score=28.30  Aligned_cols=122  Identities=10%  Similarity=-0.013  Sum_probs=62.7

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCc--hhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhH--HHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQS--NQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLA--GVIISLVLLSW   79 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~--~~~~~~~~~~~   79 (204)
                      ....+|++-+..|.-.+-++..-++  ...|..-...... ++++.+..|++.-++.|..-++++..  ..+...+.+..
T Consensus       244 Al~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlL-Ga~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~  322 (433)
T KOG3810|consen  244 ALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLL-GAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ  322 (433)
T ss_pred             HHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHH-HHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc
Confidence            3455677777777776666653111  1223333444445 78999999999888877754444333  23333333333


Q ss_pred             HH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHH
Q 041627           80 AF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVN  126 (204)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  126 (204)
                      ..  +...+...+....-....+++..-+++....+.-|..+|+.....
T Consensus       323 t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvA  371 (433)
T KOG3810|consen  323 TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVA  371 (433)
T ss_pred             ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHH
Confidence            22  222222222222222233444455556666666666777665543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=80.01  E-value=3.2  Score=33.44  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhH
Q 041627           34 LPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLA   68 (204)
Q Consensus        34 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   68 (204)
                      +-.+.......+-+...-++.||+|-|+.++.+..
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~  370 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN  370 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence            33444444467788888999999995555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		7e-17

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 14/199 (7%)
Query: 1   MQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRK 60
           +  FQQF GIN V+YY+P + +  G  S  +ALL +++V   N   T++ I  +D FGRK
Sbjct: 284 LSIFQQFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342
Query: 61  KLALSSLAGVIISLVLLSWAF-------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQ 113
            L +    G+ I +  L  AF       ++++ +  Y+  FA   GPV W + SE++   
Sbjct: 343 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402
Query: 114 YRGICGGMSATVNWISNLIVAQNFLTVAD---LVG---TGSTXXXXXXXXXXXXXXXXXX 167
            RG    ++    W++N  V+  F  +     LV     G +                  
Sbjct: 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462
Query: 168 XPETQGLTFLEVEQRWKER 186
            PET+G T  E+E  W+  
Sbjct: 463 VPETKGKTLEELEALWEPE 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 20  IVQMAGFQSNQLALLPSLV-VAGTNAVGTIVGIYLIDHF---GRKKLALSSLAGVIISLV 75
           + ++  F  ++ +    L   AG    GT++  ++ D      R    +  +  V I+ +
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGI--PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 76  LLSWAFIS----VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNL 131
           +            +   + I F   G   +      E+  ++  G   G +    ++   
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 132 IVAQNFL-TVADLVGTGSTFLILAGIAVLAVVFVILFVP 169
           + A   +    D  G    F+++ G ++LAV+ +I+ + 
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.9
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.81
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.78
2xut_A	524	Proton/peptide symporter family protein; transport	99.74
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.72
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.59
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.55
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.48
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.02
2xut_A	524	Proton/peptide symporter family protein; transport	98.94

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.90  E-value=2.6e-22  Score=158.36  Aligned_cols=184  Identities=32%  Similarity=0.613  Sum_probs=143.6

Q ss_pred             hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      .++++.+++.+..|.|.+.++.+.+...... .+........++.++.+++.||+|||+.++.+.....++.+.+.... 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~  364 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGASTDIALL-QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY  364 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCCccchhh-HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence            4677888899999999999998888776444 44444444899999999999999999999888887777766655432 


Q ss_pred             ------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------hhCcchh
Q 041627           82 ------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD------LVGTGST  149 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~  149 (204)
                            ............+..+..++.+.+.+|++|++.|+++.|+....+++++++++.+.+.+.+      ..++...
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~  444 (491)
T 4gc0_A          365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS  444 (491)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred             cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence                  2233333444455666778889999999999999999999999999999999988876543      3456677


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHhchh
Q 041627          150 FLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERA  187 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~  187 (204)
                      +++++++++++.++.++++||||+++.||.++.++++.
T Consensus       445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            88888888888888889999999999999887765543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.84  E-value=3.8e-21  Score=150.03  Aligned_cols=167  Identities=12%  Similarity=0.077  Sum_probs=144.0

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH----H
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW----A   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~   80 (204)
                      ......+.+..++|.+.+++ .++.+.++..+....+ ..++.++.|+++||+|||+++..+..+..++.+...+    .
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~  116 (451)
T 1pw4_A           39 AYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT  116 (451)
T ss_dssp             HHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHH-HHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            34445556778889998889 9999988888888777 8999999999999999999999999999988888777    5


Q ss_pred             H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHH
Q 041627           81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIA  157 (204)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  157 (204)
                      .  +.+.+.+++.+.+.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+ |++.|++.+++.
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~  196 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA  196 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4  5677778888888888888899999999999999999999999999999999999999888898 999999988888


Q ss_pred             HHHHHHHHhhccCCCC
Q 041627          158 VLAVVFVILFVPETQG  173 (204)
Q Consensus       158 ~i~~~~~~~~~~e~~~  173 (204)
                      ++..++..+.+||+++
T Consensus       197 ~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          197 ILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHhhccCCHh
Confidence            7776666677787643

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.83  E-value=6.1e-21  Score=145.80  Aligned_cols=169  Identities=9%  Similarity=0.038  Sum_probs=143.5

Q ss_pred             hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627            4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--   81 (204)
                      +....+.....+..|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T 2gfp_A           10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLT-YGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL   88 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHH-HHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence            44555667778888999999999999988888888777 899999999999999999999999988888887776655  


Q ss_pred             HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627           82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (204)
                      +.+...+++.+.+.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+|+..+++.+...++..
T Consensus        89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A           89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            56667778888888888888899999999999999999999999999999999999998888899999988777776665


Q ss_pred             HHHHhhccCCCC
Q 041627          162 VFVILFVPETQG  173 (204)
Q Consensus       162 ~~~~~~~~e~~~  173 (204)
                      +...+..||+++
T Consensus       169 ~~~~~~~~~~~~  180 (375)
T 2gfp_A          169 FSMARWMPETRP  180 (375)
T ss_dssp             CCCCCSSCCCST
T ss_pred             HHHHHHCcccCC
Confidence            545566777643

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.81  E-value=9.8e-20  Score=141.60  Aligned_cols=167  Identities=14%  Similarity=0.065  Sum_probs=136.5

Q ss_pred             hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH---HHHH
Q 041627            5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL---SWAF   81 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~   81 (204)
                      ......+...+..|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++.+..   ....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~  115 (438)
T 3o7q_A           37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFG-YFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM  115 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHH-HHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc
Confidence            3444456777889999999999999999988888877 89999999999999999999999999998888777   3333


Q ss_pred             --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhC-------------
Q 041627           82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA-DLVG-------------  145 (204)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~-------------  145 (204)
                        +.+.+.+++.+.+.+...+....+++|++|+++|+++.++......+|..+++.+.+.+. +..+             
T Consensus       116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  195 (438)
T 3o7q_A          116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE  195 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred             cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence              667778888888888888889999999999999999999999999999999999999887 4444             


Q ss_pred             ------------cchhhhHHHHHHHHHHHHHHh-hccCCC
Q 041627          146 ------------TGSTFLILAGIAVLAVVFVIL-FVPETQ  172 (204)
Q Consensus       146 ------------~~~~~~~~~~~~~i~~~~~~~-~~~e~~  172 (204)
                                  |++.+++.+.+..+..+...+ ..||++
T Consensus       196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence                        788887766666555443333 245543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.78  E-value=2.4e-18  Score=135.75  Aligned_cols=162  Identities=10%  Similarity=0.064  Sum_probs=135.1

Q ss_pred             hhhhhhhhhHHhhhHHHHHH------cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM------AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVL   76 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~   76 (204)
                      +....+++.+..+++.+.++      +|.+..+.++..+....+ ..+++++.|+++|| +|||+++..+..+..++.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (491)
T 4aps_A           23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASM-VYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV  101 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            44556677777888887765      899999988888888777 89999999999999 89999999999888888777


Q ss_pred             HHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627           77 LSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQY--RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI  152 (204)
Q Consensus        77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  152 (204)
                      .....  ..+.+.+++.+.+.+...+....+++|++|+++  |+++.++.+....+|..++|.+.+.+.+..+|++.|++
T Consensus       102 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          102 LALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             HHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            66544  566777888888888888889999999999988  77788888899999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh
Q 041627          153 LAGIAVLAVVFVIL  166 (204)
Q Consensus       153 ~~~~~~i~~~~~~~  166 (204)
                      .+...+++.+...+
T Consensus       182 ~~~~~~~~~~~~~~  195 (491)
T 4aps_A          182 AAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666665544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.74  E-value=3.3e-17  Score=130.28  Aligned_cols=160  Identities=11%  Similarity=0.054  Sum_probs=131.2

Q ss_pred             hhhhhhhhhHHhhhHHHHH-HcC------CCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-cchHhHHHhhHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQ-MAG------FQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLV   75 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~   75 (204)
                      +....+++....++|.+.+ ++|      .+..+.++..+..... ..++.++.|+++||+ |||+++..+.++..++.+
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~  100 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIG-VYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA  100 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHH-HHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4455667778888888765 478      8999988888888777 899999999999999 999999998888888777


Q ss_pred             HHHHHH---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627           76 LLSWAF---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM---SATVNWISNLIVAQNFLTVADLVGTGST  149 (204)
Q Consensus        76 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~  149 (204)
                      ......   ..+.+.+++.+.+.+...+....++.|.+|+++|+++.+.   .....++|..++|.+.+.+.+..+|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  180 (524)
T 2xut_A          101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA  180 (524)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            766542   5566677788888888888889999999999999876666   8888999999999999998888899999


Q ss_pred             hhHHHHHHHHHHHHH
Q 041627          150 FLILAGIAVLAVVFV  164 (204)
Q Consensus       150 ~~~~~~~~~i~~~~~  164 (204)
                      |++.+.+.++..+..
T Consensus       181 f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          181 FGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988777766554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.72  E-value=1.8e-17  Score=130.73  Aligned_cols=157  Identities=16%  Similarity=0.068  Sum_probs=115.5

Q ss_pred             HhhhHHHHHHcCCC--------chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH------
Q 041627           14 MYYSPTIVQMAGFQ--------SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW------   79 (204)
Q Consensus        14 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------   79 (204)
                      ...+|.+.++++.+        +.+.++..+....+ .++|++++|+++||+|||+++.++.++..++.+..++      
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G-~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~  110 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIG-CIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT  110 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTS
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34556666555322        23345566666666 7999999999999999999999999999988887763      


Q ss_pred             ------------HH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-
Q 041627           80 ------------AF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-  144 (204)
Q Consensus        80 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  144 (204)
                                  ..  ..+++.|++.|.+.++..+..+.+++|..|+++|++..++.......|..+++.......... 
T Consensus       111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  190 (491)
T 4gc0_A          111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD  190 (491)
T ss_dssp             CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence                        22  678888999999999999999999999999999999999999988888887777766554432 


Q ss_pred             -------CcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627          145 -------GTGSTFLILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       145 -------~~~~~~~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                             +|+..+...... .+..+...++.||++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~peSp  224 (491)
T 4gc0_A          191 ASWLNTDGWRYMFASECIP-ALLFLMLLYTVPESP  224 (491)
T ss_dssp             TTTTTTTHHHHHHHTTHHH-HHHHHHHGGGSCCCH
T ss_pred             cccccchhhHHHhhhhhhh-hhhhhhhhhcCCCCh
Confidence                   233333333333 333345566789973

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=7e-17  Score=125.87  Aligned_cols=162  Identities=15%  Similarity=0.189  Sum_probs=126.4

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhHHHhhHHHH-HHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVI-ISLVLLSW   79 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~   79 (204)
                      ++...+.+.+..+.|.+.++ +|.++.+.+...+....+ ..++.++.|++.||+  |||+.+..+..+.. ++.+.+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA-GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM  340 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            44556667888999999988 899998878777777666 899999999999999  99998877766555 44443332


Q ss_pred             H---H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           80 A---F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        80 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                      .   . ........+.+.+.....+....+..|.+|+++|+++.|+.+....+ ++.++|.+.+.+.+..+++..+++.+
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  420 (451)
T 1pw4_A          341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  420 (451)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            2   1 33444445556656666677778999999999999999999999999 99999999999999999988888877


Q ss_pred             HHHHHHHHHHHh
Q 041627          155 GIAVLAVVFVIL  166 (204)
Q Consensus       155 ~~~~i~~~~~~~  166 (204)
                      ++.+++.+...+
T Consensus       421 ~~~~~~~~~~~~  432 (451)
T 1pw4_A          421 GGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777776555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.59  E-value=2.7e-14  Score=110.90  Aligned_cols=152  Identities=15%  Similarity=0.080  Sum_probs=116.5

Q ss_pred             hhhhhhhhhHHhhhHHH-HHHc-CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            4 FQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      ++.....+....+.|.+ .++. |.++.+.+...+....+ ..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T 3o7q_A          268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC-FFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence            34445566778899999 8875 99998878777776666 899999999999999999998888877776665554433


Q ss_pred             -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHH
Q 041627           82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAV  158 (204)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  158 (204)
                       ........+.+.+.+...+....+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..+++.+...+
T Consensus       347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          347 GHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence             22333345556666677788888889999976 888888877 667999999999999999998 8888776544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.55  E-value=7.9e-15  Score=113.70  Aligned_cols=161  Identities=10%  Similarity=0.061  Sum_probs=106.5

Q ss_pred             hhHHhhhHHHHHHc-CCC---chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH
Q 041627           11 NTVMYYSPTIVQMA-GFQ---SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV   84 (204)
Q Consensus        11 ~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   84 (204)
                      +.+..+.|.+.++. +..   ....+...+..... ..++.++.|+++||+|||+.+..+..+..+.........  ...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T 2cfq_A          237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELL-NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34445567776653 221   22223333333333 678899999999999999988877766665544433221  222


Q ss_pred             HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627           85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMS-ATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF  163 (204)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  163 (204)
                      .....+.+.......+..+.+.+|.+|++.|+++.+.. +....+|+.++|.+.+.+.+..++...|.+.+++.+++.+.
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~  395 (417)
T 2cfq_A          316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            22222233333333344568999999999999999984 77788999999999999988888777787777777777665


Q ss_pred             HHhhccCCC
Q 041627          164 VILFVPETQ  172 (204)
Q Consensus       164 ~~~~~~e~~  172 (204)
                      .++..||++
T Consensus       396 ~~~~~~~~~  404 (417)
T 2cfq_A          396 SVFTLSGPG  404 (417)
T ss_dssp             HTTSSCCSC
T ss_pred             HHhhhcCCC
Confidence            555566654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.48  E-value=1e-13  Score=109.33  Aligned_cols=163  Identities=11%  Similarity=0.002  Sum_probs=110.6

Q ss_pred             hhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHH-----HhhHHHHHHHHHHHHH-
Q 041627            8 TGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWA-   80 (204)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~-   80 (204)
                      ..+.....+.|.+.++ .+.+..+.+......... ..++.++.+++.||+|||+...     .+..+..++...+... 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (491)
T 4aps_A          297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF-IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG  375 (491)
T ss_dssp             HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH-HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHhhccHHHHHHHHHHhccCccCHHHHhccchHH-HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667777776 566545556666666555 7888999999999999987644     4555555554444332 


Q ss_pred             ---------H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627           81 ---------F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTF  150 (204)
Q Consensus        81 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  150 (204)
                               . ........+.+.+.+...+....+..|..|++.|+++.|+.+....+|+.+++.+.+.+.+ .++...+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~  454 (491)
T 4aps_A          376 ALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYF  454 (491)
T ss_dssp             HHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHH
T ss_pred             HhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHH
Confidence                     1 3344455566666667778888999999999999999999999999999999998876644 4556677


Q ss_pred             hHHHHHHHHHHHHHHhhccCCC
Q 041627          151 LILAGIAVLAVVFVILFVPETQ  172 (204)
Q Consensus       151 ~~~~~~~~i~~~~~~~~~~e~~  172 (204)
                      ...+.+.++..+..++..++.+
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          455 SYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HHTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776666555555543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.41  E-value=1.4e-14  Score=112.24  Aligned_cols=154  Identities=8%  Similarity=0.031  Sum_probs=96.7

Q ss_pred             hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH---HHH
Q 041627            5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL---SWA   80 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~   80 (204)
                      ..+.++....+++|.++++ +|.++.+.+...+..... ..+++++.|+++||+|||+++..+..+..+.....   ...
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T 2cfq_A           18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLF-SLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHH-HHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667889988875 899999988888888777 89999999999999999999888776654422111   111


Q ss_pred             HH---HHHHHHHHHHHhcccccccchhhcccccCC--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627           81 FI---SVIGLALYITFFAPGMGPVPWTVNSEVYRE--QYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAG  155 (204)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (204)
                      ..   .......+.+...+...+.......+..++  ++|+...+.......+|..++|.+.+.+.+ .+|+..|++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~  175 (417)
T 2cfq_A           97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence            10   011111111111111112222333333332  355666777777778888899999888776 578888877655


Q ss_pred             HHHHH
Q 041627          156 IAVLA  160 (204)
Q Consensus       156 ~~~i~  160 (204)
                      ..++.
T Consensus       176 ~~~~~  180 (417)
T 2cfq_A          176 CALIL  180 (417)
T ss_dssp             TTTTH
T ss_pred             HHHHH
Confidence            54333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.02  E-value=2.2e-11  Score=92.79  Aligned_cols=145  Identities=15%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHH-HHHHHH--HHHH
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLV--LLSW   79 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~~~~~--~~~~   79 (204)
                      +....+.+.+..+.|.+.++ +|.++.+.+...+....+ ..++.++.+++.||+|||..  .+... ...+..  ....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~  285 (375)
T 2gfp_A          209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPA-AFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDW  285 (375)
T ss_dssp             HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence            34455667777888888776 788888877777766665 79999999999999988332  22222 111111  1111


Q ss_pred             H---H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627           80 A---F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI  152 (204)
Q Consensus        80 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  152 (204)
                      .   . +.......+.+.+.+...+....+..|..| ++|+++.|+.+....+++.+++.+.+.+.+..++...+..
T Consensus       286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            1   1 333344555566666777888899999998 8999999999999999999999999888777666544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.94  E-value=3.6e-10  Score=89.78  Aligned_cols=130  Identities=15%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             HHHHHHhhhhh----ccccch----HhHHHhhHHHHHHHHHHHHH----------H-HHHHHHHHHHHHhcccccccchh
Q 041627           44 AVGTIVGIYLI----DHFGRK----KLALSSLAGVIISLVLLSWA----------F-ISVIGLALYITFFAPGMGPVPWT  104 (204)
Q Consensus        44 ~~~~~~~g~l~----dr~grr----~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~  104 (204)
                      .++.++.+++.    ||.|||    +.+..+..+..++.+.+...          . +.......+.+.+.+...+....
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  428 (524)
T 2xut_A          349 MLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLE  428 (524)
T ss_dssp             HHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555543    444332    34555555555555444331          1 33444555666666667788889


Q ss_pred             hcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--Cc---------chhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627          105 VNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV--GT---------GSTFLILAGIAVLAVVFVILFVPETQG  173 (204)
Q Consensus       105 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~i~~~~~~~~~~e~~~  173 (204)
                      +..|..|+++|+++.|+.+....+|+.+++.+.+.+.+..  +|         +..+++.+++.+++.++.+++.++.++
T Consensus       429 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (524)
T 2xut_A          429 FAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQM  508 (524)
T ss_dssp             THHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998876532  12         122555666666665555455555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.82
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.6
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.2e-20  Score=144.90  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             HHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH------HHHHH
Q 041627           13 VMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------ISVIG   86 (204)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------~~~~~   86 (204)
                      +....|. .++.|+++.+.++..+....+ ..+++++.|+++||+|||+++..+.++..++.+......      ..+.+
T Consensus        44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (447)
T d1pw4a_          44 FALAMPY-LVEQGFSRGDLGFALSGISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV  121 (447)
T ss_dssp             HHHHHHH-TTSSTTCSSCHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred             HHHHHHH-HHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence            4444554 456899999999999988888 899999999999999999999999988888877765532      45677


Q ss_pred             HHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhHHHHHHHHHHHHHH
Q 041627           87 LALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV-GTGSTFLILAGIAVLAVVFVI  165 (204)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  165 (204)
                      .+++.+.+.+...+....++.|++|+++|+++.++......+|..+++.+.+...... +|++.+++.+.+..+..++.+
T Consensus       122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHH
Confidence            7788888888888888899999999999999999999999999999998888766655 688888888877777766666


Q ss_pred             hhccCCC
Q 041627          166 LFVPETQ  172 (204)
Q Consensus       166 ~~~~e~~  172 (204)
                      +..+|++
T Consensus       202 ~~~~~~~  208 (447)
T d1pw4a_         202 AMMRDTP  208 (447)
T ss_dssp             HHCCCSS
T ss_pred             Hhcccch
Confidence            6666653

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.8e-15  Score=115.62  Aligned_cols=164  Identities=14%  Similarity=0.161  Sum_probs=115.8

Q ss_pred             hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627            4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-   81 (204)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-   81 (204)
                      ++.....+....+.|.+.++ .+.+..+.+......... ..++.++.|++.||++||+..........+......... 
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (447)
T d1pw4a_         259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA-GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM  337 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhh-hhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh
Confidence            34445566778888888766 678888877766666666 899999999999999987654443333222222221111 


Q ss_pred             ------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhCcchhhhHHH
Q 041627           82 ------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWIS-NLIVAQNFLTVADLVGTGSTFLILA  154 (204)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (204)
                            .......+..+....+..+....+..|.+|++.|+++.|+.+..++++ .+++|.+.+.+.+..||+..+++..
T Consensus       338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~  417 (447)
T d1pw4a_         338 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  417 (447)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence                  333344445555566666777889999999999999999999888875 4667888999999999988888877


Q ss_pred             HHHHHHHHHHHhhc
Q 041627          155 GIAVLAVVFVILFV  168 (204)
Q Consensus       155 ~~~~i~~~~~~~~~  168 (204)
                      +..+++.++..+..
T Consensus       418 ~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         418 GGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77766655544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.1e-15  Score=113.37  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccchhhcccccCC
Q 041627           35 PSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYRE  112 (204)
Q Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  112 (204)
                      ....... ..++..+.+++.||+|||+.+..+..+..++.+......  +.......+.+.+.+...+....++.|.+|+
T Consensus       265 ~~~~~~~-~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  343 (417)
T d1pv7a_         265 TTMGELL-NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHHHH-HHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred             ccccccc-cccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3333334 788899999999999999999888888777766655543  4455555666666667778888999999999


Q ss_pred             cchhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHHHHhhccCCCCcCHH
Q 041627          113 QYRGICGGMSA-TVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVFVILFVPETQGLTFL  177 (204)
Q Consensus       113 ~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~  177 (204)
                      +.|+++.++.. ....+|..++|.+.+.+.+..|++..+++.+++.++..++..+.++++++...+
T Consensus       344 ~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  409 (417)
T d1pv7a_         344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL  409 (417)
T ss_dssp             GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence            99999999865 456789999999999999999999999888888877777777777766554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.5e-14  Score=108.52  Aligned_cols=170  Identities=9%  Similarity=0.022  Sum_probs=106.7

Q ss_pred             hhhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627            3 AFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF   81 (204)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .|..+.+.....+++|.++++ .|.++.+.+++.+..... ..+++++.|+++||+|||+.++.+.....++........
T Consensus        16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~-~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T d1pv7a_          16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLF-SLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh
Confidence            345556666777888887654 899999999998888877 899999999999999999999888777777666555433


Q ss_pred             --HHH----HHHHHHHHHhcccccccchhhcccccC--CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHH
Q 041627           82 --ISV----IGLALYITFFAPGMGPVPWTVNSEVYR--EQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLIL  153 (204)
Q Consensus        82 --~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  153 (204)
                        ...    .......+...............+..+  .+++....+........+..+++.+.+.+.+. +|+..+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  173 (417)
T d1pv7a_          95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLG  173 (417)
T ss_dssp             HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccch
Confidence              111    112222222222222222222222222  23344556666677777778888888766554 444555555


Q ss_pred             HHHHHHHHHHHHhhccCCCCc
Q 041627          154 AGIAVLAVVFVILFVPETQGL  174 (204)
Q Consensus       154 ~~~~~i~~~~~~~~~~e~~~~  174 (204)
                      .....+..+...+..+|++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         174 SGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHHHHHHSSCCCSCSS
T ss_pred             hhHHHHHHHHHHHHhcccccc
Confidence            555555555556666666443