Citrus Sinensis ID: 041642

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MSLQVSASPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccEEccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
mslqvsasptkIIQRnaekdytrrsanfhpsiwgdrflsytsdsmekddgsaKHQELKEEIRRMLKAYInkptqnnlDLIDAIQRLGVSYHFESEIDEILGKLHEAhqdcglgdnendELYYISLQFRLLRQHGCKISADVFkrfkdsdgnfktslaKDVGGMLSLYEAthlgvheenILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEArhyipiyqeqsshnEALLTFAKLDFNKLQKLHQKELGDISR
mslqvsasptkiiqrnaekdytrrsanfhpsiwgdRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVfkrfkdsdgnfKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKlhqkelgdisr
MSLQVSASPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
***************************FHPSIWGDRFLSY**********************RMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKL*************
***************************FHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
*********TKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTS**************LKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
**********************RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLQVSASPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.954 0.454 0.582 5e-76
F6M8H4 559 Probable sesquiterpene sy N/A no 0.913 0.432 0.521 2e-68
F6M8H7 562 Probable sesquiterpene sy N/A no 0.898 0.423 0.522 4e-67
O49853 554 (+)-delta-cadinene syntha N/A no 0.958 0.458 0.518 2e-66
Q39760 554 (+)-delta-cadinene syntha N/A no 0.962 0.460 0.505 5e-66
Q39761 554 (+)-delta-cadinene syntha N/A no 0.962 0.460 0.505 1e-65
E3W207 559 Sesquiterpene synthase OS N/A no 0.913 0.432 0.521 1e-65
F6M8H6 562 Probable sesquiterpene sy N/A no 0.901 0.425 0.520 8e-65
E3W208 562 Sesquiterpene synthase OS N/A no 0.901 0.425 0.520 9e-65
F6M8H5 562 Probable sesquiterpene sy N/A no 0.898 0.423 0.510 3e-64
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 188/268 (70%), Gaps = 15/268 (5%)

Query: 1   MSLQVSA---SPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKH-QE 56
           MS+Q S    +P+K    N   +  RR ANFHPSIWGD FLSY S+    DD   +H Q+
Sbjct: 1   MSVQSSGVLLAPSK----NLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQ 56

Query: 57  LKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNE 116
           LKEE+R+ML A  +   Q  L LIDAIQRLGV+YHFESEIDE+L  + +     G   + 
Sbjct: 57  LKEEVRKMLMAADDDSAQKLL-LIDAIQRLGVAYHFESEIDEVLKHMFD-----GSVVSA 110

Query: 117 NDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHE 176
            +++Y  SL+FRLLRQ G  +S D+F  FKD++GNFK SL+ DV GMLSLYEATH  VH 
Sbjct: 111 EEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHG 170

Query: 177 ENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSS 236
           E+ILDEALAFTT+HL+S   H   +PLAE+V HAL QPI +GL RLEARHY  +YQ   S
Sbjct: 171 EDILDEALAFTTTHLQSATKHS-SNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS 229

Query: 237 HNEALLTFAKLDFNKLQKLHQKELGDIS 264
           HN+ALL  AKLDFN LQKLHQKEL DIS
Sbjct: 230 HNKALLKLAKLDFNLLQKLHQKELSDIS 257
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
322424205 541 germacrene D synthase [Citrus hystrix] 0.898 0.439 0.788 1e-102
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.954 0.454 0.582 2e-74
75223414 557 RecName: Full=(-)-germacrene D synthase 0.954 0.454 0.582 3e-74
147856860 557 hypothetical protein VITISV_030783 [Viti 0.954 0.454 0.578 7e-74
147828675 557 hypothetical protein VITISV_013313 [Viti 0.954 0.454 0.578 8e-74
302143187 725 unnamed protein product [Vitis vinifera] 0.954 0.348 0.589 1e-73
225461172 557 PREDICTED: (-)-germacrene D synthase [Vi 0.954 0.454 0.589 1e-73
41058926 561 (-)-germacrene D synthase [Populus trich 0.928 0.438 0.587 1e-73
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.954 0.454 0.574 7e-73
336318889 561 terpene synthase 1 [Populus trichocarpa] 0.932 0.440 0.573 5e-72
>gi|322424205|gb|ADX01384.1| germacrene D synthase [Citrus hystrix] Back     alignment and taxonomy information
 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/241 (78%), Positives = 207/241 (85%), Gaps = 3/241 (1%)

Query: 25  SANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQ 84
           SANFHPSIWGD FL YT D  E  D S KH ELK+EIRRMLKA +NK T + L+LIDAIQ
Sbjct: 6   SANFHPSIWGDHFLQYTRDFQETGDRSVKHLELKKEIRRMLKA-VNK-TSHTLELIDAIQ 63

Query: 85  RLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKR 144
           RLGVSYHFESEIDEILGK+H+ ++DC L DNENDELYYISLQFRL RQ+G +ISADVF  
Sbjct: 64  RLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNT 123

Query: 145 FKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLA 204
           FK SDG FK SLAKDV GMLSLYEATHL VH ENILDEALAFTTSHLES+A  Q+ SPL 
Sbjct: 124 FKGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAK-QVCSPLV 182

Query: 205 ERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDIS 264
           E+VKHAL+QPIH+GL+RLEARHYIPIYQ +SSHNEALLTFAKL FN LQKLHQKELGDIS
Sbjct: 183 EQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLGFNGLQKLHQKELGDIS 242

Query: 265 R 265
           R
Sbjct: 243 R 243

Source: Citrus hystrix

Species: Citrus hystrix

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|336318889|gb|AEI52901.1| terpene synthase 1 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.913 0.432 0.517 4.3e-61
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.996 0.462 0.485 2.4e-60
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.935 0.450 0.478 1.1e-57
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.905 0.432 0.479 6.8e-56
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.969 0.454 0.450 2.6e-54
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.954 0.448 0.453 4.4e-52
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.939 0.448 0.452 5.6e-52
UNIPROTKB|Q49SP5 554 Q49SP5 "Germacrene A synthase" 0.913 0.436 0.451 8.3e-51
UNIPROTKB|D0VMR8 547 C4 "Delta-guaiene synthase 3" 0.901 0.436 0.474 1.3e-50
UNIPROTKB|D0VMR6 547 C2 "Delta-guaiene synthase 1" 0.901 0.436 0.470 4.6e-50
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 130/251 (51%), Positives = 174/251 (69%)

Query:    19 KDYTRRSANFHPSIWGDRFLSYT-SDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNL 77
             K+ +R  ANF PSIWGDRF++Y   D  E+     + +ELKE++RR L A ++KP Q  L
Sbjct:    15 KELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAATVDKPLQQ-L 73

Query:    78 DLIDAIQRLGVSYHFESEIDEILGK--LHE-AHQDCGLGDNENDELYYISLQFRLLRQHG 134
             ++IDA QRLG++YHFE+EI+E L    LH     +C  G ++   LY ++L FRLLRQ G
Sbjct:    74 NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHD---LYSVALWFRLLRQDG 130

Query:   135 CKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESI 194
              K+S DVF +F+D + NFK SL +D  G+L LYEATHL VH E +LD+AL F  + LESI
Sbjct:   131 YKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESI 190

Query:   195 AAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQK 254
               H +  PLAE+V+HAL +P+ +GL RLEA ++  IY+   SHN+ALL  AKLDFN LQ 
Sbjct:   191 VNH-LNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQS 249

Query:   255 LHQKELGDISR 265
             LH+KEL D++R
Sbjct:   250 LHKKELSDMAR 260
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-107
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 8e-77
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-26
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 6e-17
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 6e-04
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  321 bits (824), Expect = e-107
 Identities = 131/248 (52%), Positives = 167/248 (67%), Gaps = 8/248 (3%)

Query: 23  RRSANFHPSIWGD-RFLSYTSDSMEKDDGSAKHQELKEEIRRMLKA--YINKPTQNNLDL 79
           R SANF PS+WGD  FLS +SD  E+D+   + +ELKEE+R+ML+   Y     +  L L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFER-LWL 59

Query: 80  IDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISA 139
           ID +QRLG+SYHFE EI EIL  ++    +   G++  D+LY  +L FRLLRQHG  +S+
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTE--RGESNEDDLYTTALGFRLLRQHGYNVSS 117

Query: 140 DVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQ- 198
           DVFK+FKD DG FK SL +DV GMLSLYEA+HL    E+ILDEAL+FTT HLE       
Sbjct: 118 DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNW 177

Query: 199 -IGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQ 257
            I   L+  +++AL  P+H  L RLEAR YI  Y+++  HNE LL  AKLDFN LQ LHQ
Sbjct: 178 IIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ 237

Query: 258 KELGDISR 265
           +EL  +SR
Sbjct: 238 EELKILSR 245

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.5e-80  Score=614.96  Aligned_cols=239  Identities=54%  Similarity=0.818  Sum_probs=220.7

Q ss_pred             ccCCCCCCCCCcc-CccccCCCCcchhhHHHHHHHHHHHHHHHHHhc--cCCccccchhHHHHHHHhCcccccHHHHHHH
Q 041642           23 RRSANFHPSIWGD-RFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAY--INKPTQNNLDLIDAIQRLGVSYHFESEIDEI   99 (265)
Q Consensus        23 r~~a~~~ps~W~~-~fl~~~~~~~~~~~~~~~~e~LkeeVr~~l~~~--~~d~~~~~L~lID~lqRLGI~~hFe~EI~~~   99 (265)
                      ||+++|+||+||+ .|+++++++.....+.+++++||++||+||...  +.|++ ++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~-~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLF-ERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 666666655433368899999999999999864  67999 9999999999999999999999999


Q ss_pred             HHHHHhhhccCCCCCCCCCchhhHHHHHHHHhhcCccccccccccccccccccccccchhhHHHHHHHHhhccCCCCchH
Q 041642          100 LGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENI  179 (265)
Q Consensus       100 L~~i~~~~~~~g~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~i  179 (265)
                      |++||++|...|  .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||||+++||+|
T Consensus        80 L~~i~~~~~~~~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~i  157 (542)
T cd00684          80 LDYIYRYWTERG--ESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDI  157 (542)
T ss_pred             HHHHHHhhcccc--cccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHH
Confidence            999999864322  113579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh---cCCCChHHHHHHhccCCcccCchhhHHhhcccccccCCcccHHHHHHHHhhhHHHHHHH
Q 041642          180 LDEALAFTTSHLESIAAH---QIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLH  256 (265)
Q Consensus       180 LdeA~~Fs~~~L~~~~~~---~~~~~l~~~V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~h  256 (265)
                      ||||+.||+++|++.+++   ++ ++|+++|++||++|||+++||+|||+||+.|+++.++|++||||||+|||+||++|
T Consensus       158 LdeA~~ft~~~L~~~~~~~~~~~-~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~h  236 (542)
T cd00684         158 LDEALSFTTKHLEEKLESNWIID-PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALH  236 (542)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhH
Confidence            999999999999999986   77 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q 041642          257 QKELGDISR  265 (265)
Q Consensus       257 q~EL~~lsr  265 (265)
                      |+||++++|
T Consensus       237 q~El~~~~r  245 (542)
T cd00684         237 QEELKILSR  245 (542)
T ss_pred             HHHHHHHhH
Confidence            999999875

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-66
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-62
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-62
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 8e-62
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 8e-62
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 8e-62
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 9e-62
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-61
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 7e-61
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 7e-60
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 6e-43
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-37
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 6e-32
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 2e-28
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-27
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 2e-23
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-22
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-20
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 182/265 (68%), Gaps = 10/265 (3%)
Query: 1   MSLQVSASPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEE 60
           M+ QVS  P+     ++ KD  R  A+F PSIWGD FL+    +++ +    +HQ+LKEE
Sbjct: 1   MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAE-TEKRHQQLKEE 58
Query: 61  IRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDEL 120
           +R+M+ A +   TQ  L  ID++QRLGVSYHF  EI++ L  ++  + D      END L
Sbjct: 59  VRKMIVAPMANSTQK-LAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-L 111
Query: 121 YYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENIL 180
           Y  S++FRLLR+HG  +S DVF +FKD  GNFK+S+  DV G+L LY+A++L VH E+IL
Sbjct: 112 YTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDIL 171
Query: 181 DEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEA 240
           DEA++FTT HL S+A   +  PL+E V HAL Q I RGL R+EARHY+ +YQ+  SHN+A
Sbjct: 172 DEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA 230
Query: 241 LLTFAKLDFNKLQKLHQKELGDISR 265
           LL FAK+DFN LQ LH+KEL +I R
Sbjct: 231 LLEFAKIDFNMLQFLHRKELSEICR 255
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 3e-84
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-83
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 7e-83
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 6e-82
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 3e-81
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 3e-81
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-57
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-54
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-53
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 2e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
 Score =  260 bits (666), Expect = 3e-84
 Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 4/245 (1%)

Query: 23  RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDA 82
           RRS N++PS W   F+       ++D    +  EL   ++  L+   +      L+LID 
Sbjct: 2   RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETD--QIRQLELIDD 59

Query: 83  IQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDE-LYYISLQFRLLRQHGCKISADV 141
           +QR+G+S HF++E  EIL  ++  H        + +  LY  SL FRLLR+HG +++ +V
Sbjct: 60  LQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEV 119

Query: 142 FKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAH-QIG 200
           F  FK+ +G FK SL+ D  G+L LYEA+ L    E  L+ A  F T  LE       + 
Sbjct: 120 FDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVD 179

Query: 201 SPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKEL 260
             L  R+ ++L  P+H  ++R  A  +I  Y+++   N  +L  A LD N +Q   Q+EL
Sbjct: 180 GDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239

Query: 261 GDISR 265
            +  R
Sbjct: 240 KESFR 244
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.62
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-83  Score=634.14  Aligned_cols=240  Identities=52%  Similarity=0.859  Sum_probs=214.3

Q ss_pred             ccccccccCCCCCCCCCccCccccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHhCcccccHHHH
Q 041642           17 AEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEI   96 (265)
Q Consensus        17 ~~~~~~r~~a~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~LkeeVr~~l~~~~~d~~~~~L~lID~lqRLGI~~hFe~EI   96 (265)
                      .+.++.||+|||+||+|||+||++ +.....+.+.+|+++||++||+||.....|++ ++|+|||+||||||+|||++||
T Consensus        16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~-~~l~lID~lqrLGi~~hF~~EI   93 (554)
T 3g4d_A           16 SNKDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANST-QKLAFIDSVQRLGVSYHFTKEI   93 (554)
T ss_dssp             ---------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHH-HHHHHHHHHHHTTCGGGCHHHH
T ss_pred             ccCCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHcCchhhhHHHH
Confidence            345668999999999999999997 43223457899999999999999974346899 9999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCchhhHHHHHHHHhhcCccccccccccccccccccccccchhhHHHHHHHHhhccCCCC
Q 041642           97 DEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHE  176 (265)
Q Consensus        97 ~~~L~~i~~~~~~~g~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~g  176 (265)
                      +++|++||++ .     .....|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||||++||
T Consensus        94 ~~~L~~i~~~-~-----~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~g  167 (554)
T 3g4d_A           94 EDELENIYHN-N-----NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHG  167 (554)
T ss_dssp             HHHHHHHHHS-C-----CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhc-c-----CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCC
Confidence            9999999975 1     112379999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHhccCCcccCchhhHHhhcccccccCCcccHHHHHHHHhhhHHHHHHH
Q 041642          177 ENILDEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLH  256 (265)
Q Consensus       177 E~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~h  256 (265)
                      |+|||+|+.||+++|++.+++++ ++|+++|+|||++|||++|||+||||||+.|++++++|++||||||+|||+||++|
T Consensus       168 E~iLdeA~~fs~~~L~~~~~~~~-~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h  246 (554)
T 3g4d_A          168 EDILDEAISFTTHHLSLAVASLD-HPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLH  246 (554)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCC-TTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988777 88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q 041642          257 QKELGDISR  265 (265)
Q Consensus       257 q~EL~~lsr  265 (265)
                      |+||++++|
T Consensus       247 q~El~~l~r  255 (554)
T 3g4d_A          247 RKELSEICR  255 (554)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 5e-72
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-71
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 6e-08
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 7e-08
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  217 bits (554), Expect = 5e-72
 Identities = 97/206 (47%), Positives = 141/206 (68%), Gaps = 10/206 (4%)

Query: 32  IWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYH 91
           +WGD+FLS++ D+   +  + + + LKE+ R ML A   K     L+LID I+RLG+SYH
Sbjct: 1   LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADT-LNLIDIIERLGISYH 59

Query: 92  FESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGN 151
           FE EIDEIL +++  +       +  ++L   +LQFRLLRQHG  IS ++F +F+D +G 
Sbjct: 60  FEKEIDEILDQIYNQN-------SNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGK 112

Query: 152 FKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGSPLAERVKHAL 211
           FK SLA DV G+L+LYEA+H+  H ++IL++ALAF+T HLES A H + SPL E+V HAL
Sbjct: 113 FKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH-LKSPLREQVTHAL 171

Query: 212 IQPIHRGLQRLEARHYI-PIYQEQSS 236
            Q +H+G+ R+E R +I  IY ++ S
Sbjct: 172 EQCLHKGVPRVETRFFISSIYDKEQS 197
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.1e-73  Score=493.99  Aligned_cols=195  Identities=49%  Similarity=0.827  Sum_probs=182.0

Q ss_pred             CCccCccccCCCCcchhhHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhhccCC
Q 041642           32 IWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG  111 (265)
Q Consensus        32 ~W~~~fl~~~~~~~~~~~~~~~~e~LkeeVr~~l~~~~~d~~~~~L~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~g  111 (265)
                      +|||+||++.+.....+.+.+++++||++||+||.+...++. ++|+|||+||||||+|||++||+++|+.||++|.   
T Consensus         1 iWgd~Fl~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~-~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~---   76 (197)
T d5easa1           1 LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLA-DTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS---   76 (197)
T ss_dssp             CCGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTCCHH-HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC---
T ss_pred             CCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHcccCHH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC---
Confidence            799999997665434468899999999999999986556888 9999999999999999999999999999998752   


Q ss_pred             CCCCCCCchhhHHHHHHHHhhcCccccccccccccccccccccccchhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 041642          112 LGDNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHL  191 (265)
Q Consensus       112 ~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L  191 (265)
                          ...|||+|||+|||||||||+||||||++|+|++|+|++++++||+|||+||||||++++||+|||+|+.||+++|
T Consensus        77 ----~~~dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L  152 (197)
T d5easa1          77 ----NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHL  152 (197)
T ss_dssp             ----CCCSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence                3569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCChHHHHHHhccCCcccCchhhHHhhccc-ccccCC
Q 041642          192 ESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIP-IYQEQS  235 (265)
Q Consensus       192 ~~~~~~~~~~~l~~~V~~aL~~P~h~~l~Rlear~yI~-~Y~~~~  235 (265)
                      ++.+++++ ++|+++|.|||++|+||+|+||||||||+ +|+++.
T Consensus       153 ~~~~~~~~-~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye~e~  196 (197)
T d5easa1         153 ESAAPHLK-SPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ  196 (197)
T ss_dssp             HHHGGGCC-TTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCT
T ss_pred             HHHHhhcC-ccHHHHHHHHhCCCccCCCcHHHHHHHHHHHhcccC
Confidence            99999888 99999999999999999999999999995 798874
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure