Citrus Sinensis ID: 041684

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
AIAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNASAR
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccEccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
aiapklpntdlfvglnkghvvtkkellprpanrkgktskrvHFERNVirevagftpyEKTITELLKVDEDKRALKAAKRKLsthegtktKCEEMSNASAR
Flexible Loop (DISEMBL)
aiapklpntdlfvglnkghvvtkkellprpanrkgktskrvhfernvirevagftpyekTITEllkvdedkRALKAAkrklsthegtktkceemsnasar
Low Complexity Region (SEG)
AIAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDkralkaakrklSTHEGTKTKCEEMSNASAR
Disordered region (IsUnstruct)
*********DLFVGLNKGHVVT******************VHFERNVIREVAGFTPYEKTITELLKV*********************************
Disordered Region (DISOPRED)
******P*TDLFVGLNKGHVV**********************ERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNA***
Disordered Region (DISEMBL)
AIAPKLPNTDLFVGLNKGHVVTKKELLPRPA********RVHFERNVIREVAGFTPYEKTITELLKVDEDKRALK*************************
Disordered Region (DISPRO)
*******NTDLFVGLNKGHVVTK*************TSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTKTKCEE*S*AS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AIAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNASAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
P52866	106	60S ribosomal protein L36	N/A	no	0.87	0.820	0.712	2e-29
O80929	113	60S ribosomal protein L36	yes	no	0.88	0.778	0.727	6e-29
Q9M352	112	60S ribosomal protein L36	no	no	0.88	0.785	0.727	1e-28
Q9LZ57	108	60S ribosomal protein L36	no	no	0.88	0.814	0.738	1e-28
Q9LRB8	101	60S ribosomal protein L36	N/A	no	0.87	0.861	0.597	3e-21
Q92365	99	60S ribosomal protein L36	yes	no	0.86	0.868	0.523	1e-19
Q4PM12	110	60S ribosomal protein L36	N/A	no	0.86	0.781	0.569	3e-19
O94658	99	60S ribosomal protein L36	yes	no	0.86	0.868	0.511	2e-18
Q6DER2	105	60S ribosomal protein L36	yes	no	0.87	0.828	0.528	8e-18
Q66KU4	105	60S ribosomal protein L36	N/A	no	0.87	0.828	0.528	8e-18

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK PNT LFVGLNKGH+VTKKEL PRP++RKGKTSKR HF RN+IREVAGF PYEK I
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTK 88
          TELLKV +DKRALK  + K+   + +K
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESK 87

Daucus carota (taxid: 4039)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 71/88 (80%)

Query: 9  TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
          T LFVGLNKGHVVT++EL PRP +RKGKTSKR  F R +IREVAG  PYEK ITELLKV 
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 69 EDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          +DKRALK AKRKL TH+  K K EEMS+
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSS 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 72/88 (81%)

Query: 9  TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
          T LFVGLNKGHVVT++EL PRP +RKGKTSKR  F RN+I+EVAG  PYEK ITELLKV 
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 67

Query: 69 EDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          +DKRALK AKRKL TH+  K K EEMS+
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSS 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 71/88 (80%)

Query: 9  TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
          T LFVGLNKGHVVTK+E  PRP NRKGKTSKR  F RN+I+EVAG  PYEK ITELLKV 
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 69 EDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          +DKRALK AKRKL TH+  K K EEMS+
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSS 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 62/87 (71%)

Query: 10 DLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDE 69
          ++ VGLNKGH VTKK   PRP+ RKG  S+RV   R V+REVAG+ PYE+ + ELLKV +
Sbjct: 3  EIAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGK 62

Query: 70 DKRALKAAKRKLSTHEGTKTKCEEMSN 96
          DKRALK  KRKL TH   K K EEM+ 
Sbjct: 63 DKRALKMCKRKLGTHMRGKKKREEMAG 89

Enteromorpha compressa (taxid: 63659)

>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36a PE=3 SV=2

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 64/86 (74%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          L VGLNKG V+TK++L  RP+ RKG+ SKR  F R+++REVAGF PYE+ + EL++  +D
Sbjct: 5  LVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQD 64

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSN 96
          KRA K AK++L T +  K K EE+++
Sbjct: 65 KRARKLAKKRLGTLKRAKGKIEELTS 90

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 59/86 (68%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          L VGL KGH VTK E  PRP+ RKG  SK   F R++IREV GF P+E+   ELLKV +D
Sbjct: 7  LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKD 66

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSN 96
          KRALK  K++L TH   K K +E+SN
Sbjct: 67 KRALKFIKKRLGTHLRGKRKRDELSN 92

Ixodes scapularis (taxid: 6945)

>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36b PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 62/86 (72%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          L VGLNKG  +TK++L  RP+ RKG  SKR  F R+++REVAGF PYE+ + EL++  +D
Sbjct: 5  LVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQD 64

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSN 96
          KRA K AK++L T +  K K EE+++
Sbjct: 65 KRARKLAKKRLGTLKRAKGKIEELTS 90

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 58/87 (66%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          + VGLNKGH VTK    PR   R+G+ +K   F R++IREV GF PYE+   ELLKV +D
Sbjct: 7  MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSNA 97
          KRALK  K+++ TH   K K EE+SN 
Sbjct: 67 KRALKFIKKRIGTHIRAKRKREELSNV 93

Xenopus tropicalis (taxid: 8364)

>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 58/87 (66%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          + VGLNKGH VTK    PR   R+G+ +K   F R++IREV GF PYE+   ELLKV +D
Sbjct: 7  MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSNA 97
          KRALK  K+++ TH   K K EE+SN 
Sbjct: 67 KRALKFIKKRIGTHIRAKRKREELSNV 93

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
297745282	145	unnamed protein product [Vitis vinifera]	0.97	0.668	0.773	8e-35
225454218	110	PREDICTED: 60S ribosomal protein L36-3 [	0.96	0.872	0.781	8e-35
357443979	111	60S ribosomal protein L36 [Medicago trun	0.95	0.855	0.778	2e-34
225464487	110	PREDICTED: 60S ribosomal protein L36-3 i	0.96	0.872	0.770	2e-34
356574026	110	PREDICTED: 60S ribosomal protein L36-3 [	0.95	0.863	0.789	2e-34
388500776	110	unknown [Lotus japonicus]	0.95	0.863	0.778	2e-34
356535863	110	PREDICTED: 60S ribosomal protein L36-3-l	0.95	0.863	0.789	2e-34
374096129	110	60S ribosomal protein L36 [Wolffia austr	0.95	0.863	0.778	3e-34
388509878	111	unknown [Lotus japonicus]	0.95	0.855	0.778	3e-34
357443981	147	60S ribosomal protein L36 [Medicago trun	0.95	0.646	0.778	3e-34

>gi|297745282|emb|CBI40362.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/97 (77%), Positives = 82/97 (84%)

Query: 1   AIAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKT 60
            +APK PNT LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF RN+IREVAGF PYEK 
Sbjct: 35  VMAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKR 94

Query: 61  ITELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNA 97
           ITELLKV +DKRALK AKRKL TH+  K K EEMS+ 
Sbjct: 95  ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454218|ref|XP_002273507.1| PREDICTED: 60S ribosomal protein L36-3 [Vitis vinifera] gi|147820141|emb|CAN64895.1| hypothetical protein VITISV_013224 [Vitis vinifera]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 82/96 (85%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK PNT LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNA 97
          TELLKV +DKRALK AKRKL TH+  K K EEMS+ 
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443979|ref|XP_003592267.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481315|gb|AES62518.1| 60S ribosomal protein L36 [Medicago truncatula] gi|388508142|gb|AFK42137.1| unknown [Medicago truncatula]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 81/95 (85%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK P+T LFVGLNKGH+VTKKEL PRP+ RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPKQPSTGLFVGLNKGHIVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464487|ref|XP_002268801.1| PREDICTED: 60S ribosomal protein L36-3 isoform 2 [Vitis vinifera] gi|225464489|ref|XP_002268754.1| PREDICTED: 60S ribosomal protein L36-3 isoform 1 [Vitis vinifera] gi|302143845|emb|CBI22706.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 82/96 (85%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK PNT LFVGLNKGH+VTKKEL PRP++RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSNA 97
          TELLKV +DKRALK AKRKL TH+  K K EEMS+ 
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574026|ref|XP_003555154.1| PREDICTED: 60S ribosomal protein L36-3 [Glycine max]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 82/95 (86%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK P+T LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPKHPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500776|gb|AFK38454.1| unknown [Lotus japonicus]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 82/95 (86%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK P+T LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF R++IREVAGF PYEK I
Sbjct: 1  MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSN 95

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535863|ref|XP_003536462.1| PREDICTED: 60S ribosomal protein L36-3-like [Glycine max]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 82/95 (86%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK P+T LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPKPPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096129|gb|AEY84977.1| 60S ribosomal protein L36 [Wolffia australiana]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 82/95 (86%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK PNT LFVGLNKGH+VTK+EL PRP++RKGKTSKRVHF RNVIREVAGF PYEK I
Sbjct: 1  MAPKPPNTGLFVGLNKGHIVTKRELPPRPSDRKGKTSKRVHFVRNVIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEM+N
Sbjct: 61 TELLKVGKDKRALKLAKRKLGTHKRAKKKREEMAN 95

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509878|gb|AFK43005.1| unknown [Lotus japonicus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 82/95 (86%)

Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +APK P+T LFVGLNKGHVVTKKEL PRP++RKGKTSKRVHF R++IREVAGF PYEK I
Sbjct: 1  MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSN 95

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443981|ref|XP_003592268.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481316|gb|AES62519.1| 60S ribosomal protein L36 [Medicago truncatula]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 81/95 (85%)

Query: 2   IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
           +APK P+T LFVGLNKGH+VTKKEL PRP+ RKGKTSKRVHF RN+IREVAGF PYEK I
Sbjct: 37  MAPKQPSTGLFVGLNKGHIVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRI 96

Query: 62  TELLKVDEDKRALKAAKRKLSTHEGTKTKCEEMSN 96
           TELLKV +DKRALK AKRKL TH+  K K EEMSN
Sbjct: 97  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	0.88	0.785	0.613	2.1e-22
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.88	0.778	0.613	2.6e-22
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	0.88	0.814	0.625	2.6e-22
POMBASE|SPCC970.05	99	rpl3601 "60S ribosomal protein	0.86	0.868	0.441	2.6e-15
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.87	0.828	0.471	4.2e-15
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.87	0.828	0.471	4.2e-15
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.87	0.828	0.471	6.9e-15
ZFIN|ZDB-GENE-040622-2	105	rpl36 "ribosomal protein L36"	0.87	0.828	0.459	6.9e-15
RGD|2319728	104	LOC100361644 "ribosomal protei	0.87	0.836	0.459	8.8e-15
RGD|2320881	104	LOC100361079 "ribosomal protei	0.87	0.836	0.459	8.8e-15

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/88 (61%), Positives = 62/88 (70%)

Query:     9 TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
             T LFVGLNKGHVVT++EL PRP +RKGKTSKR  F RN+I+EVAG  PYEK ITELLKV 
Sbjct:     8 TGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 67

Query:    69 EDXXXXXXXXXXXSTHEGTKTKCEEMSN 96
             +D            TH+  K K EEMS+
Sbjct:    68 KDKRALKVAKRKLGTHKRAKRKREEMSS 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 54/88 (61%), Positives = 61/88 (69%)

Query:     9 TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
             T LFVGLNKGHVVT++EL PRP +RKGKTSKR  F R +IREVAG  PYEK ITELLKV 
Sbjct:     8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query:    69 EDXXXXXXXXXXXSTHEGTKTKCEEMSN 96
             +D            TH+  K K EEMS+
Sbjct:    68 KDKRALKVAKRKLGTHKRAKRKREEMSS 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/88 (62%), Positives = 61/88 (69%)

Query:     9 TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
             T LFVGLNKGHVVTK+E  PRP NRKGKTSKR  F RN+I+EVAG  PYEK ITELLKV 
Sbjct:     4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query:    69 EDXXXXXXXXXXXSTHEGTKTKCEEMSN 96
             +D            TH+  K K EEMS+
Sbjct:    64 KDKRALKVAKRKLGTHKRAKRKREEMSS 91

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

POMBASE|SPCC970.05 rpl3601 "60S ribosomal protein L36" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query:    11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
             L VGLNKG V+TK++L  RP+ RKG+ SKR  F R+++REVAGF PYE+ + EL++  +D
Sbjct:     5 LVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQD 64

Query:    71 XXXXXXXXXXXSTHEGTKTKCEEMSN 96
                         T +  K K EE+++
Sbjct:    65 KRARKLAKKRLGTLKRAKGKIEELTS 90

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/87 (47%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    PR + R+G+ +K   F R++IREV GF PYE+   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNVLA 95

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/87 (47%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    PR + R+G+ +K   F R++IREV GF PYE+   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNVLA 95

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 41/87 (47%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    PR + R+G+ +K   F R++IREV GF PYE+   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNVLA 95

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040622-2 rpl36 "ribosomal protein L36" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/87 (45%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    P+ + R+G+ +K   F R++IREV GF PYE+   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNTLA 95

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/87 (45%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    PR + R+G+ +K   F R++IREV GF PY++   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNVLA 95

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2320881 LOC100361079 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/87 (45%), Positives = 50/87 (57%)

Query:    13 VGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDXX 72
             VGLNKGH VTK    PR + R+G+ +K   F R++IREV GF PY++   ELLKV +D  
Sbjct:     9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKR 68

Query:    73 XXXXXXXXXSTHEGTKTKCEEMSNASA 99
                       TH   K K EE+SN  A
Sbjct:    69 ALKFIKKRVGTHIRAKRKREELSNVLA 95

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.5232	0.86	0.8190	yes	no
Q3T171	RL36_BOVIN	No assigned EC number	0.5287	0.87	0.8285	yes	no
Q92365	RL36A_SCHPO	No assigned EC number	0.5232	0.86	0.8686	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.5287	0.87	0.8285	yes	no
P39032	RL36_RAT	No assigned EC number	0.5172	0.87	0.8285	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.5287	0.87	0.8285	yes	no
Q8UW19	RL36_LAPHA	No assigned EC number	0.5287	0.87	0.8285	N/A	no
Q55AQ9	RL36_DICDI	No assigned EC number	0.4204	0.86	0.8190	yes	no
O80929	RL361_ARATH	No assigned EC number	0.7272	0.88	0.7787	yes	no
P52866	RL36_DAUCA	No assigned EC number	0.7126	0.87	0.8207	N/A	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5172	0.87	0.8285	yes	no
Q66KU4	RL36_XENLA	No assigned EC number	0.5287	0.87	0.8285	N/A	no
Q90YT2	RL36_ICTPU	No assigned EC number	0.5116	0.86	0.8190	N/A	no
Q9LRB8	RL36_ENTCP	No assigned EC number	0.5977	0.87	0.8613	N/A	no
P47964	RL36_MOUSE	No assigned EC number	0.4942	0.87	0.8285	yes	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.5287	0.87	0.8285	yes	no
O94658	RL36B_SCHPO	No assigned EC number	0.5116	0.86	0.8686	yes	no
P49181	RL36_CAEEL	No assigned EC number	0.4534	0.86	0.8269	yes	no
P05745	RL36A_YEAST	No assigned EC number	0.4065	0.91	0.91	yes	no
Q9LZ57	RL363_ARATH	No assigned EC number	0.7386	0.88	0.8148	no	no
O14455	RL36B_YEAST	No assigned EC number	0.4065	0.91	0.91	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	2e-33
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	4e-26
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	4e-17

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score =  110 bits (278), Expect = 2e-33
 Identities = 55/87 (63%), Positives = 65/87 (74%)

Query: 11 LFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDED 70
          + VGLNKGH VTK+   PRP+ RKGK SKR  F R++IREVAGF PYEK + ELLKV +D
Sbjct: 2  IAVGLNKGHKVTKRPRKPRPSRRKGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGKD 61

Query: 71 KRALKAAKRKLSTHEGTKTKCEEMSNA 97
          KRALK AK++L TH   K K EE+SN 
Sbjct: 62 KRALKFAKKRLGTHRRAKRKREELSNV 88

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score = 92.4 bits (230), Expect = 4e-26
 Identities = 50/91 (54%), Positives = 65/91 (71%)

Query: 7  PNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLK 66
          P T + VGLNKGH+VTK+   P P+ RKG  SKR    ++VIREV GF+PYE+ + ELLK
Sbjct: 1  PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLK 60

Query: 67 VDEDKRALKAAKRKLSTHEGTKTKCEEMSNA 97
          V +DKRALK AK++L TH+  K K +E+  A
Sbjct: 61 VGKDKRALKYAKKRLGTHKRAKAKRDEIQEA 91

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 69.6 bits (170), Expect = 4e-17
 Identities = 40/88 (45%), Positives = 62/88 (70%)

Query: 9  TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
            L VGLNKG  VTK++   RP+ +KG+ SKR  F R+++RE+AG +PYE+ + EL++  
Sbjct: 5  PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNS 64

Query: 69 EDKRALKAAKRKLSTHEGTKTKCEEMSN 96
          +DKRA K AK++L + +  K K EE+++
Sbjct: 65 QDKRARKLAKKRLGSLKRAKAKVEELTS 92

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	100.0

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=4.1e-54  Score=299.21  Aligned_cols=93  Identities=54%  Similarity=0.838  Sum_probs=91.1

Q ss_pred             CCCcceeeecCCceecccCCCCCCCcccCCCCcchhHHHHHHhhhhccchhHHHHHHHhhcchhhHHHHHHHHhhchhhh
Q 041684            7 PNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEG   86 (100)
Q Consensus         7 ~~~g~avGlnkGh~vtk~~~k~r~s~~kg~~tkr~kfvr~vIrEv~GfaPYErr~mELlk~skdKrAlKf~KKRlGth~R   86 (100)
                      +++||||||||||+||+++++++||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|
T Consensus         1 ~~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~R   80 (98)
T PTZ00196          1 PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKR   80 (98)
T ss_pred             CCCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHhhhhh
Q 041684           87 TKTKCEEMSNASA   99 (100)
Q Consensus        87 AKrK~eel~~vl~   99 (100)
                      ||+|+|||++||+
T Consensus        81 aK~Kreel~~vl~   93 (98)
T PTZ00196         81 AKAKRDEIQEALR   93 (98)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999986

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3e-54  Score=299.69  Aligned_cols=93  Identities=59%  Similarity=0.849  Sum_probs=80.2

Q ss_pred             CCCcceeeecCCceecccCCCCCCCcccCCCCcchhHHHHHHhhhhccchhHHHHHHHhhcchhhHHHHHHHHhhchhhh
Q 041684            7 PNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEG   86 (100)
Q Consensus         7 ~~~g~avGlnkGh~vtk~~~k~r~s~~kg~~tkr~kfvr~vIrEv~GfaPYErr~mELlk~skdKrAlKf~KKRlGth~R   86 (100)
                      |++||||||||||+||+++++++||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|||||||+|
T Consensus         1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R   80 (98)
T PF01158_consen    1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR   80 (98)
T ss_dssp             --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred             CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHhhhhh
Q 041684           87 TKTKCEEMSNASA   99 (100)
Q Consensus        87 AKrK~eel~~vl~   99 (100)
                      ||+|+|||+|||+
T Consensus        81 AKrKrEel~~vl~   93 (98)
T PF01158_consen   81 AKRKREELSNVLA   93 (98)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-50  Score=280.57  Aligned_cols=92  Identities=59%  Similarity=0.821  Sum_probs=90.5

Q ss_pred             CCcceeeecCCceecccCCCCCCCcccCCCCcchhHHHHHHhhhhccchhHHHHHHHhhcchhhHHHHHHHHhhchhhhh
Q 041684            8 NTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGT   87 (100)
Q Consensus         8 ~~g~avGlnkGh~vtk~~~k~r~s~~kg~~tkr~kfvr~vIrEv~GfaPYErr~mELlk~skdKrAlKf~KKRlGth~RA   87 (100)
                      .+|++|||||||++|+++++||+|+++|.+|+|++||||||+|||||||||+++||||++|+||||+||+|+|||||+||
T Consensus         4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA   83 (102)
T KOG3452|consen    4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA   83 (102)
T ss_pred             ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhhh
Q 041684           88 KTKCEEMSNASA   99 (100)
Q Consensus        88 KrK~eel~~vl~   99 (100)
                      |+|+|||+|||+
T Consensus        84 k~KrEELsnvl~   95 (102)
T KOG3452|consen   84 KRKREELSNVLA   95 (102)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999986

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.4e-37  Score=210.62  Aligned_cols=91  Identities=44%  Similarity=0.740  Sum_probs=89.4

Q ss_pred             CcceeeecCCceecccCCCCCCCcccCCCCcchhHHHHHHhhhhccchhHHHHHHHhhcchhhHHHHHHHHhhchhhhhH
Q 041684            9 TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDEDKRALKAAKRKLSTHEGTK   88 (100)
Q Consensus         9 ~g~avGlnkGh~vtk~~~k~r~s~~kg~~tkr~kfvr~vIrEv~GfaPYErr~mELlk~skdKrAlKf~KKRlGth~RAK   88 (100)
                      .|+++|||+|-+||++.+.+|||+++|.+|+|+.||+++++|++||+|||+++||||++|.||+|.|++|||||||+||+
T Consensus         5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk   84 (97)
T COG5051           5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK   84 (97)
T ss_pred             cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhh
Q 041684           89 TKCEEMSNASA   99 (100)
Q Consensus        89 rK~eel~~vl~   99 (100)
                      .|.|||.++|+
T Consensus        85 aKvEel~~~i~   95 (97)
T COG5051          85 AKVEELTSVIQ   95 (97)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		3e-28
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		5e-10
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-09
3zf7_m	109	High-resolution Cryo-electron Microscopy Structure		4e-06

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 69/95 (72%)
Query: 2  IAPKLPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTI 61
          +AP  P + LFVG+NKGHVVTK+EL PRP++RKGK +KRVHF RN+IREVAGF PYEK I
Sbjct: 1  MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 62 TELLKVDEDXXXXXXXXXXXSTHEGTKTKCEEMSN 96
          TELLKV +D            TH+  K K EEMS+
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSS 95

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 9  TDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVD 68
          T + +GLNKG  VT     P+ + +KG  S R  F R+++RE+AG +PYE+ + +L++  
Sbjct: 5  TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 69 EDXXXXXXXXXXXSTHEGTKTKCEEMSNASA 99
           +            +    K K EEM+N  A
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNIIA 95

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 13 VGLNKGHVVTK--KELLPRPA-NRKGKTSKRVHFERNVIREVAGFTPYEKTITELLK 66
          VG+NKG + T+  K+L    A  RKGK  KRV   R VIREV GF PYEK I EL+K
Sbjct: 7  VGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63

>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 109

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 6  LPNTDLFVGLNKGHVVTKKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELL 65
          +P T +  G NKG+  T++   P   +R     K++   + +I ++ GF+P E+ + ELL
Sbjct: 10 VPRTGIIAGFNKGYKTTRRARRPSSNDRYALPHKKLRAVKAIISDLVGFSPMERRVQELL 69
Query: 66 KVDED 70
          +V +D
Sbjct: 70 RVGKD 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	1e-27
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	1e-27
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	1e-22

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 83.1 bits (205), Expect = 1e-22
 Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 9  TDLFVGLNKGHVVTKKELL---PRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELL 65
              VG+NKG + T+ E          RKGK  KRV   R VIREV GF PYEK I EL+
Sbjct: 3  KGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELI 62

Query: 66 KV---DEDKRALKAAKRKLSTHEGTKTKCEEMSNASA 99
          K     + K+A K A+++L TH   K K   +  A  
Sbjct: 63 KAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVR 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=3.6e-54  Score=301.06  Aligned_cols=92  Identities=45%  Similarity=0.625  Sum_probs=90.3

Q ss_pred             CCcceeeecCCceec---ccCCCCCCCcccCCCCcchhHHHHHHhhhhccchhHHHHHHHhhcch---hhHHHHHHHHhh
Q 041684            8 NTDLFVGLNKGHVVT---KKELLPRPANRKGKTSKRVHFERNVIREVAGFTPYEKTITELLKVDE---DKRALKAAKRKL   81 (100)
Q Consensus         8 ~~g~avGlnkGh~vt---k~~~k~r~s~~kg~~tkr~kfvr~vIrEv~GfaPYErr~mELlk~sk---dKrAlKf~KKRl   81 (100)
                      ++||||||||||+||   +++++||||+++|.+|||++||||||+|||||||||+|+||||++|+   |||||||+|+||
T Consensus         2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl   81 (104)
T 4a18_Q            2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL   81 (104)
T ss_dssp             CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence            478999999999999   99999999999999999999999999999999999999999999999   999999999999


Q ss_pred             chhhhhHhHHHHHhhhhh
Q 041684           82 STHEGTKTKCEEMSNASA   99 (100)
Q Consensus        82 Gth~RAKrK~eel~~vl~   99 (100)
                      |||+|||+|+|||+|||+
T Consensus        82 Gth~RAKrKreel~~vl~   99 (104)
T 4a18_Q           82 GTHRRAKVKKALLEEAVR   99 (104)
T ss_dssp             CSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00