Citrus Sinensis ID: 041715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGSDKGSGNHSFVSYN
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEHHEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
pafflgtvgfgigirlgdlspgvvyglhRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRRegliggsdkgsgnhsfvsyn
Flexible Loop (DISEMBL)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEeklrregliggsdkgsgnhsfvsyn
Low Complexity Region (SEG)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGSDKGSGNHSFVSYN
Disordered region (IsUnstruct)
**FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK****************************
Disordered Region (DISOPRED)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVI********************************
Disordered Region (DISEMBL)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGSDKGSGNHSFVSYN
Disordered Region (DISPRO)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEE*****************HS***YN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGSDKGSGNHSFVSYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224131728	402	predicted protein [Populus trichocarpa]	0.953	0.355	0.902	9e-69
224068855	400	predicted protein [Populus trichocarpa]	0.953	0.357	0.888	1e-68
296084991	478	unnamed protein product [Vitis vinifera]	0.933	0.292	0.885	4e-68
359485809	400	PREDICTED: uncharacterized protein LOC10	0.933	0.35	0.885	5e-68
255582443	399	dopamine beta-monooxygenase, putative [R	0.96	0.360	0.861	8e-67
388497076	403	unknown [Lotus japonicus]	0.926	0.344	0.827	4e-63
357495381	442	Auxin-induced in root cultures protein [	0.933	0.316	0.836	7e-63
388507436	442	unknown [Medicago truncatula]	0.933	0.316	0.836	7e-63
449506930	458	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.96	0.314	0.770	4e-62
388522027	401	unknown [Medicago truncatula]	0.94	0.351	0.829	4e-62

>gi|224131728|ref|XP_002321163.1| predicted protein [Populus trichocarpa] gi|222861936|gb|EEE99478.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 130/144 (90%), Positives = 133/144 (92%), Gaps = 1/144 (0%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           AF +GTVGF IGIRLG+LSPGVVYGLHRKLGF AF  GALQTLALLFRPKTTNKFRKYWK
Sbjct: 258 AFIIGTVGFAIGIRLGELSPGVVYGLHRKLGFAAFSFGALQTLALLFRPKTTNKFRKYWK 317

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGYACVVLGVVNVFQGFEVMGE RSYAKL YCLCLSTLIGVCIALEVNSWV+FCR
Sbjct: 318 SYHHFVGYACVVLGVVNVFQGFEVMGESRSYAKLGYCLCLSTLIGVCIALEVNSWVVFCR 377

Query: 122 KSKEEKLRREGLIG-GSDKGSGNH 144
           KSKEEKLRREGLI  GS KGSG H
Sbjct: 378 KSKEEKLRREGLISCGSGKGSGIH 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068855|ref|XP_002302842.1| predicted protein [Populus trichocarpa] gi|222844568|gb|EEE82115.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 132/144 (91%), Gaps = 1/144 (0%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           A F+GTVGF IGIRLG+LSPGVVYGLHRKLGF AF  GALQTLALLFRPKTTNKFRKYWK
Sbjct: 256 ALFIGTVGFAIGIRLGELSPGVVYGLHRKLGFAAFSFGALQTLALLFRPKTTNKFRKYWK 315

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGYACVVLGVVNVFQG EVMGE RSYAKL YCLCLSTLIG CIALEVNSWV+FCR
Sbjct: 316 SYHHFVGYACVVLGVVNVFQGLEVMGESRSYAKLGYCLCLSTLIGACIALEVNSWVVFCR 375

Query: 122 KSKEEKLRREGLI-GGSDKGSGNH 144
           KSKEEKLRRE LI GGSDK SG+H
Sbjct: 376 KSKEEKLRRERLIGGGSDKDSGSH 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084991|emb|CBI28406.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 132/140 (94%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           FFLGTVGF IGI+LG++SPGVVYGLHRKLGF AFCLG LQTLALLFRPKTTNKFRKYWKS
Sbjct: 76  FFLGTVGFAIGIKLGEMSPGVVYGLHRKLGFGAFCLGGLQTLALLFRPKTTNKFRKYWKS 135

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGYACVVLGVVNVFQGFEVMG  RSYAKLAYCL L+TLIG+CIA EVNSWVIFCRK
Sbjct: 136 YHHFVGYACVVLGVVNVFQGFEVMGSSRSYAKLAYCLSLATLIGICIASEVNSWVIFCRK 195

Query: 123 SKEEKLRREGLIGGSDKGSG 142
           +KEE +RREGLIGGS+KGSG
Sbjct: 196 AKEETMRREGLIGGSEKGSG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485809|ref|XP_002262661.2| PREDICTED: uncharacterized protein LOC100253083 [Vitis vinifera]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 132/140 (94%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           FFLGTVGF IGI+LG++SPGVVYGLHRKLGF AFCLG LQTLALLFRPKTTNKFRKYWKS
Sbjct: 258 FFLGTVGFAIGIKLGEMSPGVVYGLHRKLGFGAFCLGGLQTLALLFRPKTTNKFRKYWKS 317

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGYACVVLGVVNVFQGFEVMG  RSYAKLAYCL L+TLIG+CIA EVNSWVIFCRK
Sbjct: 318 YHHFVGYACVVLGVVNVFQGFEVMGSSRSYAKLAYCLSLATLIGICIASEVNSWVIFCRK 377

Query: 123 SKEEKLRREGLIGGSDKGSG 142
           +KEE +RREGLIGGS+KGSG
Sbjct: 378 AKEETMRREGLIGGSEKGSG 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582443|ref|XP_002532009.1| dopamine beta-monooxygenase, putative [Ricinus communis] gi|223528340|gb|EEF30382.1| dopamine beta-monooxygenase, putative [Ricinus communis]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 124/144 (86%), Positives = 130/144 (90%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           AF LGTVGF IGIRLG+ SPGVVY LHRKLGF  FCLGALQTLALLFRPKTTNK+RKYWK
Sbjct: 256 AFLLGTVGFAIGIRLGESSPGVVYSLHRKLGFAVFCLGALQTLALLFRPKTTNKYRKYWK 315

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGYACVVLGVVNVFQGFEV+GEGRSYAKL YCLCLSTL+G  IALEVNSWVIFCR
Sbjct: 316 SYHHFVGYACVVLGVVNVFQGFEVLGEGRSYAKLGYCLCLSTLVGASIALEVNSWVIFCR 375

Query: 122 KSKEEKLRREGLIGGSDKGSGNHS 145
           KSKEEK+RREGLI  SDK S  H+
Sbjct: 376 KSKEEKMRREGLISVSDKVSVIHN 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497076|gb|AFK36604.1| unknown [Lotus japonicus]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 124/139 (89%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGF IGIRLG+LSPGV Y LHRKLG   FCLGA+QTLALLFRP   N+FRKYWKS
Sbjct: 260 FILGTVGFAIGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKS 319

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEVMG  RSYAKL+YCL LST+IGVCIALEVNSWV+FCRK
Sbjct: 320 YHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRK 379

Query: 123 SKEEKLRREGLIGGSDKGS 141
           SKE+K+RREGLIG SDKGS
Sbjct: 380 SKEDKMRREGLIGSSDKGS 398

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495381|ref|XP_003617979.1| Auxin-induced in root cultures protein [Medicago truncatula] gi|355519314|gb|AET00938.1| Auxin-induced in root cultures protein [Medicago truncatula]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGFGIGI+LG ++PGV YGLHRKLG   FCLGALQTLALLFRP TTNKFRKYWKS
Sbjct: 298 FILGTVGFGIGIQLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWKS 357

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEV+G  RSYAKL+YCL LSTLIGV IALEVNSWVIFCRK
Sbjct: 358 YHHFVGYSCVVLGFVNVFQGFEVIGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCRK 417

Query: 123 SKEEKLRREGLIG-GSDKGSG 142
           SKEEK+R+EGLIG  SDKGS 
Sbjct: 418 SKEEKMRKEGLIGTSSDKGSS 438

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507436|gb|AFK41784.1| unknown [Medicago truncatula]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGFGIGI+LG ++PGV YGLHRKLG   FCLGALQTLALLFRP TTNKFRKYWKS
Sbjct: 298 FILGTVGFGIGIQLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWKS 357

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEV+G  RSYAKL+YCL LSTLIGV IALEVNSWVIFCRK
Sbjct: 358 YHHFVGYSCVVLGFVNVFQGFEVIGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCRK 417

Query: 123 SKEEKLRREGLIG-GSDKGSG 142
           SKEEK+R+EGLIG  SDKGS 
Sbjct: 418 SKEEKMRKEGLIGTSSDKGSS 438

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506930|ref|XP_004162887.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101209946 [Cucumis sativus]

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 111/144 (77%), Positives = 126/144 (87%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
            F LGT+GF IGIRLG+LSPGV Y LHRKLG   F LG +QTLALLFRPKTTNKFRKYWK
Sbjct: 315 GFALGTIGFVIGIRLGELSPGVEYSLHRKLGIGVFALGGIQTLALLFRPKTTNKFRKYWK 374

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGYACVV+G VNVFQGFE MG   SYAKLAYCL LSTL+G+C++LEVNSWV+FCR
Sbjct: 375 SYHHFVGYACVVMGAVNVFQGFEAMGASGSYAKLAYCLGLSTLVGICVSLEVNSWVVFCR 434

Query: 122 KSKEEKLRREGLIGGSDKGSGNHS 145
           KS+EEK+RREGLIG ++K SG+H+
Sbjct: 435 KSQEEKMRREGLIGVAEKDSGSHN 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522027|gb|AFK49075.1| unknown [Medicago truncatula]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 122/141 (86%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           AF LGTVGF IGI LG LSPGV Y LHRKLG   FCLGALQTLALLFRP   NKFRKYWK
Sbjct: 257 AFILGTVGFAIGIHLGQLSPGVEYSLHRKLGVAVFCLGALQTLALLFRPNARNKFRKYWK 316

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGY+CVVLG VNVFQGFEVMG  RSYAKL+YCL LSTLIGV IALEVNSWV+FCR
Sbjct: 317 SYHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTLIGVSIALEVNSWVMFCR 376

Query: 122 KSKEEKLRREGLIGGSDKGSG 142
           KSKEEK+RREGLIG SDKG+ 
Sbjct: 377 KSKEEKMRREGLIGTSDKGNN 397

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.946	0.351	0.769	7.3e-59
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.806	0.307	0.414	8.7e-24
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.846	0.323	0.359	2.3e-23
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.906	0.344	0.343	2e-22
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.9	0.335	0.372	2.3e-22
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.8	0.297	0.395	4.1e-22
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.806	0.259	0.333	7.5e-15
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.76	0.308	0.347	3.9e-13
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.726	0.273	0.312	9.4e-11

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 110/143 (76%), Positives = 124/143 (86%)

Query:     3 FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
             F LGT+GF IGI LG  SPGV YGLHR LG   F   ALQTLALLFRPKTTNKFR+YWKS
Sbjct:   263 FLLGTIGFSIGIVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKS 322

Query:    63 YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
             YHHFVGYACVV+GVVNVFQGFEV+ EGRSYAKL YCLCLSTL+GVC+A+EVNSWV+FCRK
Sbjct:   323 YHHFVGYACVVMGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFCRK 382

Query:   123 SKEEKLRREGLIGGSDKGSGNHS 145
             +KEEK++R+GL G  D+ SG+HS
Sbjct:   383 AKEEKMKRDGLTG-VDRCSGSHS 404

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/123 (41%), Positives = 75/123 (60%)

Query:     2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             A+ +G  G+  G++LG  S G+ Y  HR +G   F +  LQ  A+L RP+  +KFR  W 
Sbjct:   264 AYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWN 323

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC- 120
              YHH VGY+ ++LG++NVF+G  ++    +Y K AY   + TL G+ + LEV +WVI   
Sbjct:   324 IYHHGVGYSILILGIINVFKGLSILNPKHTY-KTAYIAVIGTLGGITLLLEVVTWVIVLK 382

Query:   121 RKS 123
             RKS
Sbjct:   383 RKS 385

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 46/128 (35%), Positives = 76/128 (59%)

Query:     2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             A+ +G  G+  G++LG+ S G+ +  HR +G   F L  +Q  A+L RPK  +K+R YW 
Sbjct:   263 AYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWN 322

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
              YHH VGYA + LG++NVF+G  ++    +Y K AY   ++ L G+ + LE  +WV+  +
Sbjct:   323 IYHHGVGYAILTLGIINVFKGLNILKPQDTY-KTAYIAVIAVLGGIALLLEAITWVVVLK 381

Query:   122 KSKEEKLR 129
             +     ++
Sbjct:   382 RKSNNSMK 389

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 47/137 (34%), Positives = 77/137 (56%)

Query:     2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             A+ +G  G+  G++LG+ S G+ +  HR +G   FCL  +Q  A+  RPK  +K+R YW 
Sbjct:   254 AYIIGVAGWATGLKLGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWN 313

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
              YHH VGY+ ++L VVNVF+G +++   + +   AY   +  L  V + LE  +W +  +
Sbjct:   314 IYHHTVGYSVIILAVVNVFKGLDILSPEKQWRN-AYTAIIVVLGIVAVVLEGFTWYVVIK 372

Query:   122 KSKEEKLRREGLIGGSD 138
             + K E   +     G+D
Sbjct:   373 RGKAEASAKTSQRVGND 389

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 51/137 (37%), Positives = 75/137 (54%)

Query:     2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             A+ +G  G+  G++LG  SPG+ Y  HR +G   F L  +Q  A+  RPK  +K R YW 
Sbjct:   262 AYIIGVAGWATGLKLGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWN 321

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSW-VIFC 120
              YHH +GY  ++LGVVNVF+G  ++   + + K AY   +  L  V   LE  +W V+  
Sbjct:   322 IYHHTIGYTIIILGVVNVFKGLGILSPKKQW-KNAYIGIIVVLAIVATLLEAFTWYVVIK 380

Query:   121 RKSKEEKLRREGLIGGS 137
             R+  E K  + G   G+
Sbjct:   381 RRKLEAKTAQHGASNGT 397

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 49/124 (39%), Positives = 74/124 (59%)

Query:     3 FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
             + +G  G+  GI+LG+ SPG  Y  HR LG   F    LQ  ALL RPK  +K+R YW  
Sbjct:   253 YVIGVAGWATGIKLGNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYWNV 312

Query:    63 YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA-LEVNSW-VIFC 120
             YHH VGY  ++L +VN+F+GF+++     + + AY + +   +G C+  LE  +W ++  
Sbjct:   313 YHHTVGYTTIILSIVNIFKGFDILDPEDKW-RWAY-IGILIFLGACVLILEPLTWFIVLR 370

Query:   121 RKSK 124
             RKS+
Sbjct:   371 RKSR 374

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 7.5e-15, P = 7.5e-15
 Identities = 43/129 (33%), Positives = 69/129 (53%)

Query:     3 FFLGTVGFGIGIRLGDLS-PGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             +F G +G G+G  +      G+   LH  +G   F LG LQ L+L  RP   +K+RKYW 
Sbjct:   264 YFSGLIG-GLGTAIYMARHTGMRTTLHTVIGLLLFALGFLQILSLKARPNKDHKYRKYWN 322

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEV----NSWV 117
              YHH +GY  +VL + N+++G  ++  G S  K+AY   +  +    + +E+      W 
Sbjct:   323 WYHHTMGYIVIVLSIYNIYKGLSILQPG-SIWKIAYTTIICCIAAFAVVMEILQFKKRWA 381

Query:   118 -IFCRKSKE 125
              +F +KSK+
Sbjct:   382 RLFFKKSKD 390

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 40/115 (34%), Positives = 57/115 (49%)

Query:     3 FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
             F LG  G   G+ L +         H+ LG T   +G LQ LALL RP   +K+RKYW  
Sbjct:   254 FLLGLTGVICGLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPDKQSKYRKYWNW 313

Query:    63 YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWV 117
             YHH +G   ++L + N+F G  +   G S+    Y   ++ L    I LEV  ++
Sbjct:   314 YHHNIGRLLIILAISNIFYGIHLAKAGTSWNG-GYGFAVAVLALTAIGLEVRKFL 367

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query:     3 FFLGTVGFGIGIRLGD-LSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
             F  G     +GI+L + + P +    HR +G     L  LQ LA   RP+   K R+YW 
Sbjct:   261 FIFGLAAVILGIQLYNRIQPDIP--AHRGIGIFLLVLSTLQVLAFFARPQKETKMRRYWN 318

Query:    62 SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEV 113
              YHH++G   +  G VN+  G  +   G    K+ Y   LS  +   + LE+
Sbjct:   319 WYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLLAFVVLEI 370


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.145   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       150   0.00087  104 3  11 22  0.40    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.14u 0.08s 14.22t   Elapsed:  00:00:01
  Total cpu time:  14.14u 0.08s 14.22t   Elapsed:  00:00:01
  Start:  Sat May 11 01:53:51 2013   End:  Sat May 11 01:53:52 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	3e-28
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	8e-19
pfam03188	137	pfam03188, Cytochrom_B561, Eukaryotic cytochrome b	0.001

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  102 bits (256), Expect = 3e-28
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           A  L   GF +GI L     G +   H  LG     L  LQ L  L RP   +K R  W 
Sbjct: 79  AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWN 138

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEG-RSYAKLAYCLCLSTLIGVCIALEV 113
             H ++G A ++L +VN+F G ++ G G     K+AY + ++ L  V + LE+
Sbjct: 139 WAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score = 76.5 bits (189), Expect = 8e-19
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVV-YGLHRKLGFTAFCLGALQTLALLFR---PKTTNKFR 57
           A  LG +G        + S     Y LH  LG  AF L  LQ L+   R   P   +K+R
Sbjct: 44  ALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYR 103

Query: 58  KYWKSYHHFVGYACVVLGVVNVFQGF 83
            Y   YH FVG A  +L +V +F G 
Sbjct: 104 SYLNPYHRFVGLAAFILAIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL---ALLFRPKTTNKFR 57
           A  LG VG     +  +       Y LH  LG T   L  LQ L   AL   P  +   R
Sbjct: 45  ALILGVVGLLAVFKFHNELGIPHFYSLHSWLGLTTVILFLLQWLSGFALFLFPGLSRSIR 104

Query: 58  KYWKSYHHFVGYACVVLGVVNVFQGF 83
                +H F G    VL +V    G 
Sbjct: 105 SLLLPWHVFFGLVIFVLAIVTALLGL 130

Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a eukaryotic family. Members of the 'prokaryotic cytochrome b561' family can be found in Pfam: PF01292. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	99.8
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.78
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.53
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.28
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.2
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.01
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	98.35
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	98.2
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	98.11
PLN02680	232	carbon-monoxide oxygenase	98.03
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	98.0
PLN02351	242	cytochromes b561 family protein	97.99
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	97.84
PLN02810	231	carbon-monoxide oxygenase	97.43
KOG1619	245	consensus Cytochrome b [Energy production and conv	96.57
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	96.47
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	89.98
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	87.88
PRK09546	324	zntB zinc transporter; Reviewed	87.09
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	85.99
COG5658	204	Predicted integral membrane protein [Function unkn	85.78
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	85.72
PF10951	347	DUF2776: Protein of unknown function (DUF2776); In	84.13
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	82.68
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	81.27
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	81.2
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	80.68
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	80.5

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=99.80  E-value=4.6e-20  Score=144.80  Aligned_cols=112  Identities=34%  Similarity=0.567  Sum_probs=97.7

Q ss_pred             eeeehhhhhhhhheeccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeeeeehHHHHHHHHHHHHHhh
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQ   81 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~~~~~H~~iGiiv~~l~~lQ~l~~~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~l   81 (150)
                      +++++++|+++++...++......+.|+++|++++++.++||+.+++||.+.+++|.+|++.|+++||++.++|++|+++
T Consensus        79 ~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~  158 (191)
T cd08760          79 AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL  158 (191)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999851222234689999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccc-cCceehhhHHHHHHHHHHHHHHH
Q 041715           82 GFEVMGEGR-SYAKLAYCLCLSTLIGVCIALEV  113 (150)
Q Consensus        82 Gl~l~~~~~-~~w~i~y~~~v~~~~~~~i~lEi  113 (150)
                      |+++..++. +.|.++|.++++++.++++++|.
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (191)
T cd08760         159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI  191 (191)
T ss_pred             HHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence            999995441 46889999999999999999873

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.78  E-value=1.3e-20  Score=163.88  Aligned_cols=131  Identities=37%  Similarity=0.672  Sum_probs=118.6

Q ss_pred             CeeeehhhhhhhhheeccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeeeeehHHHHHHHHHHHHHh
Q 041715            1 PAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVF   80 (150)
Q Consensus         1 ~~~~l~~aGf~lGi~l~~~s~~~~~~~H~~iGiiv~~l~~lQ~l~~~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~   80 (150)
                      ++|+++++|+..|.++.+++.+.....|+.+|+..++++++||++.++||.|++|.|++|||+||..||..+++|++|++
T Consensus       257 ~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~  336 (403)
T KOG4293|consen  257 TGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIF  336 (403)
T ss_pred             eEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHh
Confidence            36889999999999999988777789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccCce-ehhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 041715           81 QGFEVMGEGRSYAK-LAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREG  132 (150)
Q Consensus        81 lGl~l~~~~~~~w~-i~y~~~v~~~~~~~i~lEi~~~~~~~r~~~~~~~~~~~  132 (150)
                      .|+++. .+...|. .+|+.+.+....+.+.+|+.+|....++.+++++++..
T Consensus       337 ~~~~l~-~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~  388 (403)
T KOG4293|consen  337 DGLELL-YPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPSSMSRTS  388 (403)
T ss_pred             hhHhhh-cCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCcccccccc
Confidence            999999 6666787 89999999999999999999988777776665555443

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.53  E-value=2.5e-15  Score=111.41  Aligned_cols=82  Identities=38%  Similarity=0.648  Sum_probs=71.7

Q ss_pred             eeeehhhhhhhhheeccCCC-CcccccchhHHHHHHHHHHHHHHHhhhccCCC---CCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFRPKTT---NKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~-~~~~~~H~~iGiiv~~l~~lQ~l~~~~Rp~k~---~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+++++...++++ ....+.|+.+|++++++.++|++.+++||.++   ++.|..|+++|++.||++.++|++
T Consensus        44 a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~  123 (129)
T smart00665       44 ALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIV  123 (129)
T ss_pred             HHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999998866532 23468999999999999999999888888776   788999999999999999999999


Q ss_pred             HHhhhc
Q 041715           78 NVFQGF   83 (150)
Q Consensus        78 Ni~lGl   83 (150)
                      |+++|+
T Consensus       124 ~~~lG~  129 (129)
T smart00665      124 TIFLGL  129 (129)
T ss_pred             HHHccC
Confidence            999996

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.28  E-value=1.6e-12  Score=96.31  Aligned_cols=83  Identities=29%  Similarity=0.518  Sum_probs=68.3

Q ss_pred             eeeehhhhhhhhheeccCCC-CcccccchhHHHHHHHHHHHHHHHhhhc---cCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFR---PKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~-~~~~~~H~~iGiiv~~l~~lQ~l~~~~R---p~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      ++++.++|+++.+...++.+ ....+.|..+|++++++.++|++.++++   |.++.+.|+.|+..|+++|+++.++|++
T Consensus        45 ~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~  124 (137)
T PF03188_consen   45 ALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIA  124 (137)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778899999888765432 2235899999999999999999855443   5566778899999999999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      |+++|+.
T Consensus       125 ~i~~G~~  131 (137)
T PF03188_consen  125 TIFLGLT  131 (137)
T ss_pred             HHHHHHH
Confidence            9999994

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.20  E-value=7.1e-12  Score=92.84  Aligned_cols=82  Identities=29%  Similarity=0.417  Sum_probs=66.7

Q ss_pred             eeeehhhhhhhhheeccCCCC-cccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~-~~~~~H~~iGiiv~~l~~lQ~l~~~~---Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+++++...++.+. ...+.|..+|++++++.++|++.++.   .|.+..++|..++++|++.|+++.+++++
T Consensus        46 ~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~  125 (131)
T cd08554          46 AFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIA  125 (131)
T ss_pred             HHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999987644321 23589999999999999999975443   45555556999999999999999999999


Q ss_pred             HHhhhc
Q 041715           78 NVFQGF   83 (150)
Q Consensus        78 Ni~lGl   83 (150)
                      |+++|.
T Consensus       126 t~~~G~  131 (131)
T cd08554         126 TILLGI  131 (131)
T ss_pred             HHHhcC
Confidence            999984

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.01  E-value=1.5e-10  Score=90.55  Aligned_cols=84  Identities=25%  Similarity=0.316  Sum_probs=65.8

Q ss_pred             eeeehhhhhhhhheeccCCC-CcccccchhHHHHHHHHHHHHHHHhh---hccCCC--CCcceeeeeeeehHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALL---FRPKTT--NKFRKYWKSYHHFVGYACVVLG   75 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~-~~~~~~H~~iGiiv~~l~~lQ~l~~~---~Rp~k~--~k~R~~w~~~H~~~Gr~~iiLg   75 (150)
                      +.+++++|+++.+...++.+ ....+.|..+|++++++.++|++.++   ++|.+.  .++|+.++++|++.|+++.++|
T Consensus        68 a~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~  147 (183)
T cd08761          68 ALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLG  147 (183)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            45677888888776644322 12358999999999999999997543   344333  2678999999999999999999


Q ss_pred             HHHHhhhccc
Q 041715           76 VVNVFQGFEV   85 (150)
Q Consensus        76 ivNi~lGl~l   85 (150)
                      ++|+.+|++.
T Consensus       148 ~~t~~lGl~~  157 (183)
T cd08761         148 LATLVLGLET  157 (183)
T ss_pred             HHHHHHhcCc
Confidence            9999999977

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=98.35  E-value=2.3e-07  Score=70.98  Aligned_cols=83  Identities=27%  Similarity=0.386  Sum_probs=62.3

Q ss_pred             eeeehhhhhhhhheeccCCCCc-ccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~-~~~~H~~iGiiv~~l~~lQ~l-~~--~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+..-+..-++.+.. .++.|.++|++++++..+|.+ ++  ++.|......|.---.+|++.|+++.+++++
T Consensus        51 a~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~  130 (144)
T cd08766          51 ALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIA  130 (144)
T ss_pred             HHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778887776665543221 258899999999999999986 43  3477644444544455899999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      ++.+|+.
T Consensus       131 t~~lGl~  137 (144)
T cd08766         131 TAETGLL  137 (144)
T ss_pred             HHHHHHH
Confidence            9999985

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=98.20  E-value=1.8e-06  Score=70.07  Aligned_cols=84  Identities=30%  Similarity=0.481  Sum_probs=60.6

Q ss_pred             eeeehhhhhhhhheeccCC-CCc--ccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeeeeehHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLS-PGV--VYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLG   75 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s-~~~--~~~~H~~iGiiv~~l~~lQ~l-~~--~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLg   75 (150)
                      +++++++|+...+..-++. .+.  .++.|..+|++++++..+|.+ ++  ++.|.-....|..--.+|...|+++.+++
T Consensus        68 Al~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLa  147 (214)
T cd08764          68 AFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLA  147 (214)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHH
Confidence            5667777776666554443 111  248899999999999999986 43  24675443345444447999999999999


Q ss_pred             HHHHhhhccc
Q 041715           76 VVNVFQGFEV   85 (150)
Q Consensus        76 ivNi~lGl~l   85 (150)
                      ++++.+|+.-
T Consensus       148 iaT~~lGl~e  157 (214)
T cd08764         148 VATALLGITE  157 (214)
T ss_pred             HHHHHHHHHH
Confidence            9999999954

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=98.11  E-value=1.7e-06  Score=66.11  Aligned_cols=83  Identities=25%  Similarity=0.313  Sum_probs=62.9

Q ss_pred             eeeehhhhhhhhheeccCCCC-cccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~-~~~~~H~~iGiiv~~l~~lQ~l~~---~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|...-+..-++.+. -.++.|..+|++++++..+|-+.+   ++-|....+.|..+-.+|++.|++..+++++
T Consensus        51 a~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~  130 (143)
T cd08763          51 ALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVG  130 (143)
T ss_pred             HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            456667776666554443221 125899999999999999997632   2467655667888888899999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      +..+|+.
T Consensus       131 t~~lG~~  137 (143)
T cd08763         131 TSLLGLT  137 (143)
T ss_pred             HHHHHHH
Confidence            9999984

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=98.03  E-value=3.2e-06  Score=69.37  Aligned_cols=83  Identities=24%  Similarity=0.341  Sum_probs=62.4

Q ss_pred             eeeehhhhhhhhheeccCCCCc-ccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~-~~~~H~~iGiiv~~l~~lQ~l-~~--~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+..-++..++++.. .++.|.++|++++++..+|.+ ++  ++-|......|...--+|.+.|+++.+|+++
T Consensus        90 A~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~Laia  169 (232)
T PLN02680         90 AFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVA  169 (232)
T ss_pred             HHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888877766653322 248999999999999999976 33  2467644334443346799999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      +..+|+.
T Consensus       170 T~~lG~~  176 (232)
T PLN02680        170 TATTGIL  176 (232)
T ss_pred             HHHHHHH
Confidence            9999984

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=98.00  E-value=3.6e-06  Score=65.10  Aligned_cols=83  Identities=19%  Similarity=0.275  Sum_probs=61.5

Q ss_pred             eeeehhhhhhhhheeccCCCC-cccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~-~~~~~H~~iGiiv~~l~~lQ~l-~~--~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+..-+..-++.+. ..++.|.++|++++++..+|-+ ++  ++-|......|.-.-.+|.+.|+++.+|+++
T Consensus        58 a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~  137 (153)
T cd08765          58 AFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIA  137 (153)
T ss_pred             HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667776666665444322 1358999999999999999976 33  2456544455666677899999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      +..+|+.
T Consensus       138 t~~lG~~  144 (153)
T cd08765         138 TALMGIT  144 (153)
T ss_pred             HHHHHHH
Confidence            9999984

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PLN02351 cytochromes b561 family protein

Probab=97.99  E-value=1.5e-05  Score=65.77  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=59.3

Q ss_pred             eeeehhhhhhhhheeccCCCCcccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeeeeehHHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVVN   78 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~~~~~H~~iGiiv~~l~~lQ~l-~~~--~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivN   78 (150)
                      +++++++|+..-+...++.....++.|..+|++++++..+|-+ ++.  +-|......|.-.-.+|...|+...+|++++
T Consensus        94 Ali~~vvGl~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaT  173 (242)
T PLN02351         94 ALASGVFGIWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVAT  173 (242)
T ss_pred             HHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHH
Confidence            4566777777733322211111358999999999999999965 432  3454444456555678999999999999999


Q ss_pred             Hhhhccc
Q 041715           79 VFQGFEV   85 (150)
Q Consensus        79 i~lGl~l   85 (150)
                      ..+|+.-
T Consensus       174 a~lGl~E  180 (242)
T PLN02351        174 AETGLLE  180 (242)
T ss_pred             HHHHHHH
Confidence            9999853

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=97.84  E-value=1.2e-05  Score=63.69  Aligned_cols=83  Identities=23%  Similarity=0.369  Sum_probs=63.6

Q ss_pred             eeeehhhhhhhhheeccCCCCc-ccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~-~~~~H~~iGiiv~~l~~lQ~l-~~~--~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|+..-+..-++++-. .++.|..+|++++++..+|-+ ++.  +-|......|..--.+|...|+.+.+++++
T Consensus        81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia  160 (179)
T cd08762          81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA  160 (179)
T ss_pred             HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            5677888888888876664311 247899999999999999975 432  345433345666688899999999999999


Q ss_pred             HHhhhcc
Q 041715           78 NVFQGFE   84 (150)
Q Consensus        78 Ni~lGl~   84 (150)
                      +..+|+.
T Consensus       161 t~~lGl~  167 (179)
T cd08762         161 SCISGIN  167 (179)
T ss_pred             HHHHHHH
Confidence            9999985

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02810 carbon-monoxide oxygenase

Probab=97.43  E-value=0.0001  Score=60.51  Aligned_cols=84  Identities=26%  Similarity=0.359  Sum_probs=65.1

Q ss_pred             eeeehhhhhhhhheeccCCCC-cccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~-~~~~~H~~iGiiv~~l~~lQ~l-~~--~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      +++++++|...-+.-.++++- ..++.|..+|++++++-.+|-+ ++  ++-|......|...-.+|...|....+++++
T Consensus        90 Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAia  169 (231)
T PLN02810         90 ALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVG  169 (231)
T ss_pred             HHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            566788888877776665431 1259999999999999999975 44  2467655556666668899999999999999


Q ss_pred             HHhhhccc
Q 041715           78 NVFQGFEV   85 (150)
Q Consensus        78 Ni~lGl~l   85 (150)
                      +..+|+.-
T Consensus       170 ta~lGi~E  177 (231)
T PLN02810        170 NAALGFLE  177 (231)
T ss_pred             HHHHHHHH
Confidence            99999853

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=96.57  E-value=0.0031  Score=52.15  Aligned_cols=85  Identities=25%  Similarity=0.424  Sum_probs=63.6

Q ss_pred             eeeehhhhhhhhheeccCCC-CcccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~-~~~~~~H~~iGiiv~~l~~lQ~l-~~~--~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      ++++++.|+..-|...++.. ...++.|..+|+.++.+-.+|-+ +++  +-|--..+.|.--=..|..+|....+++++
T Consensus        99 Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~  178 (245)
T KOG1619|consen   99 ALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIV  178 (245)
T ss_pred             HHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHH
Confidence            45567777777676665533 11358999999999999999964 543  345544566777777899999999999999


Q ss_pred             HHhhhcccc
Q 041715           78 NVFQGFEVM   86 (150)
Q Consensus        78 Ni~lGl~l~   86 (150)
                      +.-+|+...
T Consensus       179 ta~~Gl~ek  187 (245)
T KOG1619|consen  179 TALTGLLEK  187 (245)
T ss_pred             HHHHHHHHH
Confidence            999999433

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=96.47  E-value=0.0017  Score=47.11  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             eeeehhhhhhhhheeccCCCCc-ccccchhHHHHHHHHHHHHHHHhhh
Q 041715            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALLF   48 (150)
Q Consensus         2 ~~~l~~aGf~lGi~l~~~s~~~-~~~~H~~iGiiv~~l~~lQ~l~~~~   48 (150)
                      ++++.++|+.+|....++.+++ ..+.|.++|.++++++++|++.+++
T Consensus        54 ~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~  101 (105)
T PF10348_consen   54 FLVLMILGLFLGSVYNGSTPDLYPNNAHGKMGWILFVLMIVQVILGVI  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999887765443 5799999999999999999975543

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=89.98  E-value=1.7  Score=31.71  Aligned_cols=30  Identities=23%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             ceeeeeeeehHHHHHHHHHHHHHhhhcccc
Q 041715           57 RKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (150)
Q Consensus        57 R~~w~~~H~~~Gr~~iiLgivNi~lGl~l~   86 (150)
                      ++.|..+|+...-++.+++++.+..++..-
T Consensus        30 ~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~   59 (129)
T smart00665       30 KPTWFLLHVVLQILALVLGVIGLLAIFISH   59 (129)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455666666666666666666666655444

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=87.88  E-value=3.6  Score=29.96  Aligned_cols=58  Identities=24%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHhh-hccCCCCCcceeeeeeeehHHHHHHHHHHHHHhhhcccc
Q 041715           26 GLHRKLGFTAFCLGALQTLALL-FRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (150)
Q Consensus        26 ~~H~~iGiiv~~l~~lQ~l~~~-~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~l~   86 (150)
                      +.|+.+=.  +++.+++|.+.+ .|+.+.. .|+.|.+.|+.+.-.+.+++++-...++...
T Consensus         3 ~~H~~lm~--~g~~~l~~~~il~~r~~~~~-~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~   61 (131)
T cd08554           3 NWHPLLMV--IGFVFLMGEALLVYRVFRLL-TKRALKLLHAILHLLAFVLGLVGLLAVFLFH   61 (131)
T ss_pred             CccHHHHH--HHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56776533  334456666443 4664332 3567778888888888888887777777655

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PRK09546 zntB zinc transporter; Reviewed

Probab=87.09  E-value=1.7  Score=36.66  Aligned_cols=43  Identities=7%  Similarity=0.016  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715           69 YACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL  111 (150)
Q Consensus        69 r~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l  111 (150)
                      .+.+.+.+++++.||+..+-|...|.++|..++++++++.+++
T Consensus       272 ~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~  314 (324)
T PRK09546        272 MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGV  314 (324)
T ss_pred             HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence            4566678899999999876666678888887777777766654

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=85.99  E-value=2  Score=35.65  Aligned_cols=42  Identities=12%  Similarity=0.057  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHH
Q 041715           69 YACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA  110 (150)
Q Consensus        69 r~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~  110 (150)
                      -+.+.+.+++++.||+..+-|...|.++|..++++++++.++
T Consensus       266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~  307 (318)
T TIGR00383       266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG  307 (318)
T ss_pred             HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence            455667888899999987666667888998888888777765

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=85.78  E-value=1.7  Score=35.26  Aligned_cols=67  Identities=12%  Similarity=0.064  Sum_probs=40.4

Q ss_pred             CcceeeeeeeehHHHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 041715           55 KFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK  122 (150)
Q Consensus        55 k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~lEi~~~~~~~r~  122 (150)
                      +.+..|+..|...|-.+++-+.+...-++... .+..-+...+...++......+.+-++.+.+..++
T Consensus        40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~-~~~~~~~~v~~~~~~~Il~li~~ls~~l~~~g~d~  106 (204)
T COG5658          40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAG-GQGQMLLAVALFAAVLILFLILLLSAILVALGYDI  106 (204)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            55678999999999999999998888887555 33323334444333333333333333444444333

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=85.72  E-value=1.2  Score=35.15  Aligned_cols=64  Identities=25%  Similarity=0.312  Sum_probs=44.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeeeeehHHHHHHHHHHHHHhhhcccccccccCce
Q 041715           26 GLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAK   94 (150)
Q Consensus        26 ~~H~~iGiiv~~l~~lQ~l~~~~---Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~l~~~~~~~w~   94 (150)
                      ..|+.+|.+++++..+-.++...   +..  +   ++|.-.|.|.|-.+..|-.+|..+.-++..++++.|+
T Consensus        81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~--~---~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R  147 (175)
T PF13301_consen   81 DRHYRLGFALLAFMGLGALGGQLGTYRQN--G---KLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWAR  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHcC--C---CCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHH
Confidence            57889998888888777764432   221  1   1666669999988888888888888888754443454

>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function

Probab=84.13  E-value=1.5  Score=37.73  Aligned_cols=114  Identities=16%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             eehhhhhhhhheeccCCC---CcccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeeeeehHHHHHHHHHHH
Q 041715            4 FLGTVGFGIGIRLGDLSP---GVVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (150)
Q Consensus         4 ~l~~aGf~lGi~l~~~s~---~~~~~~H~~iGiiv~~l~~lQ~l~~~~---Rp~k~~k~R~~w~~~H~~~Gr~~iiLgiv   77 (150)
                      ++.+.||+-++.+-.+++   .+..--|.-.|+.+.|-.++-..+-+.   |..-++|.|+.|.+.-...|.+.+++|+.
T Consensus       163 ~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lVl~mGsi~~l~Gl~  242 (347)
T PF10951_consen  163 LCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKLVLVMGSISILWGLY  242 (347)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHHHHHHhhHHHHhhhh
Confidence            456788888888754322   211245888888888866655544443   45555678888876554444444444433


Q ss_pred             HHhhhcccccccccCceehhhHHHHHHHHHHHHHHHHHhhh
Q 041715           78 NVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVI  118 (150)
Q Consensus        78 Ni~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~lEi~~~~~  118 (150)
                      -++..-+-. ...+++.-.-.+.++.-...=++|-..-|+.
T Consensus       243 vl~~~~~~~-~~~~G~ilIGLGlvCySIsSKViLLA~vWr~  282 (347)
T PF10951_consen  243 VLLASSGPA-NNAPGYILIGLGLVCYSISSKVILLAKVWRR  282 (347)
T ss_pred             eEEecCCcc-cCCcceeeeehhhHHHHHHHHHHHHHHHHHh
Confidence            222211111 1113454333344555555445554445643

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=82.68  E-value=3.5  Score=32.51  Aligned_cols=60  Identities=13%  Similarity=0.259  Sum_probs=45.4

Q ss_pred             cccccchhHHHHHHHHHHHHHH-HhhhccCCCCCcceeeeeeeehHHHHHHHHHHHHHhhhcccc
Q 041715           23 VVYGLHRKLGFTAFCLGALQTL-ALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (150)
Q Consensus        23 ~~~~~H~~iGiiv~~l~~lQ~l-~~~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~l~   86 (150)
                      ...++|-.-|+++..|..++.. .-...+.+    +.-|...|...+-+++.+=.....+|.++.
T Consensus       112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRIL  172 (175)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468899999999999988864 33333332    234455799999999999999999998765

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=81.27  E-value=3.3  Score=35.01  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715           66 FVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL  111 (150)
Q Consensus        66 ~~Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l  111 (150)
                      .+..+.+.+-+++++.||+..+-|.-.|.++|-.++++++++.+++
T Consensus       267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~  312 (322)
T COG0598         267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLL  312 (322)
T ss_pred             HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHH
Confidence            3456677788899999999996576678889888888888877775

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=81.20  E-value=9  Score=27.76  Aligned_cols=29  Identities=31%  Similarity=0.548  Sum_probs=16.9

Q ss_pred             eeeeeeeehHHHHHHHHHHHHHhhhcccc
Q 041715           58 KYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (150)
Q Consensus        58 ~~w~~~H~~~Gr~~iiLgivNi~lGl~l~   86 (150)
                      +-++-.|-++|-+++++.+.+...|+-..
T Consensus        66 ~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~   94 (137)
T PF03188_consen   66 PHFKSWHSILGLATFVLALLQPLLGFFRF   94 (137)
T ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666665543

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=80.68  E-value=13  Score=28.42  Aligned_cols=59  Identities=22%  Similarity=0.448  Sum_probs=37.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeeeeehHHHHHHHHHHHHHhhhcc
Q 041715           23 VVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (150)
Q Consensus        23 ~~~~~H~~iGiiv~~l~~lQ~l~~~~Rp~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~   84 (150)
                      ..++.||.+=.+-+++..-|.+ +.+|+.|.+  |+.+..+|+.+--.+++++++-+..=++
T Consensus         6 ~~Fn~HP~lM~~gfi~l~~eAi-L~~r~~~~~--k~~~k~iH~~l~~la~~~~vvGl~avf~   64 (144)
T cd08766           6 LIFNVHPVLMVIGFIFLAGEAI-LAYKTVPGS--REVQKAVHLTLHLVALVLGIVGIYAAFK   64 (144)
T ss_pred             ceeeccHHHHHHHHHHHHHHHH-HHhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999876655544444443 234665543  4456678998888888887776655443

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=80.50  E-value=1.8  Score=32.44  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhc--------------------cCCCCCcceeeeeeeehHHHHHHHHHHHHHhhhcc
Q 041715           25 YGLHRKLGFTAFCLGALQTLALLFR--------------------PKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (150)
Q Consensus        25 ~~~H~~iGiiv~~l~~lQ~l~~~~R--------------------p~k~~k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~   84 (150)
                      ...|..+|++.+++..+..+..+.+                    +.++.+.+.-+|....+.-.+...+.++-...|+-
T Consensus        47 ~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~  126 (188)
T PF00033_consen   47 RWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLI  126 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998866655                    22222334455777777888888888888888888


Q ss_pred             c
Q 041715           85 V   85 (150)
Q Consensus        85 l   85 (150)
                      +
T Consensus       127 ~  127 (188)
T PF00033_consen  127 M  127 (188)
T ss_dssp             C
T ss_pred             H
Confidence            8

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4ev6_A	339	Magnesium transport protein CORA; membrane protein	83.5
2iub_A	363	CORA, divalent cation transport-related protein; m	82.16

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=83.50  E-value=1.3  Score=36.32  Aligned_cols=41  Identities=7%  Similarity=0.066  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715           71 CVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL  111 (150)
Q Consensus        71 ~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l  111 (150)
                      .+.+.+++++.||+..+-|...|.++|-.++++++++.+++
T Consensus       289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~  329 (339)
T 4ev6_A          289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIF  329 (339)
T ss_dssp             SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHH
Confidence            34577788999999875566668888888777777666554

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=82.16  E-value=0.94  Score=37.49  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715           68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL  111 (150)
Q Consensus        68 Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l  111 (150)
                      ..+.+.+.+++++.||+..+-|.-.|.++|.+++++++++.+++
T Consensus       310 t~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~  353 (363)
T 2iub_A          310 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIM  353 (363)
T ss_dssp             HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence            34556677788889998765565568899988887777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2iuba2	64	Magnesium transport protein CorA {Thermotoga marit	80.39

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=80.39  E-value=0.78  Score=27.48  Aligned_cols=43  Identities=12%  Similarity=0.053  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHH
Q 041715           68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA  110 (150)
Q Consensus        68 Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~  110 (150)
                      .-+.+.+.+++.+.|++..+-|...|.++|-.++++.+...++
T Consensus        13 t~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~   55 (64)
T d2iuba2          13 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI   55 (64)
T ss_dssp             HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            4456677888888999887555555666665555555554444