Citrus Sinensis ID: 041723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MWHHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Secondary Structure (PSIPRED)
cEEcccccccccHHHHHHHHHccccccccccHHHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHcccccccccEEcccccccccccHHHHcccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccHHHHHHHHHHHcccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccccHHHcccccccEEEcccccccccccHHHHHHccEEEcccccccccccHHHccccccc
Coil and Loop (DISEMBL)
mwhhgtrkkkiATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLgqvntastvpyaSANLSSLFSLLSLIAYCKEnflpslgnltklndlylfgndfsgkvpdslgdllqlnylTGEILVEIRKLTQLHILRLAEnqlegsvpssiFELRNlraldlsdnnlsgtgdlNMVLLNLESLTALVLSSnklsllagttvntnlpnftIIGSVHETLASSHIFCTTKIN
Flexible Loop (DISEMBL)
mwhhgtrkkkiataayGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAenqlegsvpSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Low Complexity Region (SEG)
MWHHGTRKKKIATAAYGTASNAMKTLLQSPSlanlaeklanlkvlHLGQVNTASTVPYAsanlsslfsllslIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Disordered region (IsUnstruct)
**********************************LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTT***
Disordered Region (DISOPRED)
MWHHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Disordered Region (DISEMBL)
**********IATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Disordered Region (DISPRO)
****GTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWHHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.763	0.155	0.367	6e-16
P93194	1109	Receptor-like protein kin	N/A	no	0.482	0.099	0.45	1e-14
O49318	1124	Probable leucine-rich rep	no	no	0.662	0.134	0.370	9e-14
Q9C9H7	847	Receptor-like protein 12	no	no	0.473	0.127	0.444	2e-13
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.820	0.181	0.327	2e-13
O82318	960	Probably inactive leucine	no	no	0.666	0.158	0.329	4e-13
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.75	0.136	0.338	9e-13
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.671	0.126	0.364	1e-12
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.671	0.126	0.364	1e-12
Q42371	976	LRR receptor-like serine/	no	no	0.473	0.110	0.410	3e-12

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 108/212 (50%), Gaps = 38/212 (17%)

Query: 29  SPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSL-LS---------------- 71
           SPSL NL     NL VL+L Q    S +P    N+ S+  L LS                
Sbjct: 143 SPSLGNLK----NLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLK 198

Query: 72  --LIAYCKENFL-----PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYL 117
             ++ Y  EN+L     P LGN+  + DL L  N  +G +P +LG+L  L       NYL
Sbjct: 199 NLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYL 258

Query: 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN 177
           TG I  EI  +  +  L L++N+L GS+PSS+  L+NL  L L  N L  TG +   L N
Sbjct: 259 TGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYL--TGGIPPKLGN 316

Query: 178 LESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
           +ES+  L LS+NKL+    +++  NL N TI+
Sbjct: 317 IESMIDLELSNNKLTGSIPSSLG-NLKNLTIL 347

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 10/120 (8%)

Query: 81  LPS-LGNLTKLNDLYLFGNDFSGKVPDSLG------DL-LQLNYLTGEILVEIRKLTQLH 132
           +PS  G LTKL+ LYL GN FSG++P  LG      DL LQ N L GEI  E+  L+QL 
Sbjct: 300 IPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQ 359

Query: 133 ILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L L  N L G VP SI+++++L++L L  NNLS  G+L + +  L+ L +L L  N  +
Sbjct: 360 YLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLS--GELPVDMTELKQLVSLALYENHFT 417

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-LGNLTKLNDLYLFG 97
           L  L+ + L Q   +  +P    NL+SL   L+L        +PS +GN+  L  LYL+ 
Sbjct: 252 LVKLQEVILWQNKFSGFIPKDIGNLTSL-ETLALYGNSLVGPIPSEIGNMKSLKKLYLYQ 310

Query: 98  NDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
           N  +G +P  LG L ++       N L+GEI VE+ K+++L +L L +N+L G +P+ + 
Sbjct: 311 NQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS 370

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           +LRNL  LDLS N+L  TG +     NL S+  L L  N LS
Sbjct: 371 KLRNLAKLDLSINSL--TGPIPPGFQNLTSMRQLQLFHNSLS 410

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 9/117 (7%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
           SLGNL++L +L LF N   GK+PDS+GDL QL       N L GEI   +  L+ L  L 
Sbjct: 177 SLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLV 236

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           L  NQL G VP+SI  L  LR +   +N+LS  G++ +   NL  L+  VLSSN  +
Sbjct: 237 LTHNQLVGEVPASIGNLIELRVMSFENNSLS--GNIPISFANLTKLSIFVLSSNNFT 291

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 101/223 (45%), Gaps = 36/223 (16%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLL----SLIAYCKENF------------ 80
           + L NLK L L   N    VP     LSSL +++      +    E F            
Sbjct: 194 KNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLA 253

Query: 81  -------LPS-LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI 125
                  +PS LG L +L  +YL+ N  +GK+P  LG +  L       N +TGEI +E+
Sbjct: 254 VGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEV 313

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALV 185
            +L  L +L L  NQL G +PS I EL NL  L+L  N+L G+  L + L     L  L 
Sbjct: 314 GELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGS--LPVHLGKNSPLKWLD 371

Query: 186 LSSNKLS--LLAGTTVNTNLPNFTIIGSVHETLASSHIF-CTT 225
           +SSNKLS  + +G   + NL    +  +         IF C T
Sbjct: 372 VSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPT 414

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 33/185 (17%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG 97
           K+ NLK ++LG  N +  +PY    LSSL  L  +         PSLG+L KL  ++L+ 
Sbjct: 215 KMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQ 274

Query: 98  NDFSGKVPDSL-----------------GDLLQL--------------NYLTGEILVEIR 126
           N  SG++P S+                 G++ +L              N LTG+I   + 
Sbjct: 275 NKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVT 334

Query: 127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVL 186
            L +L +L+L  N+  G +P+++ +  NL  LDLS NNL  TG L   L +   LT L+L
Sbjct: 335 SLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNL--TGKLPDTLCDSGHLTKLIL 392

Query: 187 SSNKL 191
            SN L
Sbjct: 393 FSNSL 397

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
           L NL++L L        +P     L  + SL+    Y +      LGN + L       N
Sbjct: 166 LVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAEN 225

Query: 99  DFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
             +G +P  LG L  L       N LTGEI  ++ +++QL  L L  NQL+G +P S+ +
Sbjct: 226 MLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLAD 285

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV---NTNLPNFTI 208
           L NL+ LDLS NNL  TG++     N+  L  LVL++N LS     ++   NTNL    +
Sbjct: 286 LGNLQTLDLSANNL--TGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVL 343

Query: 209 IGS 211
            G+
Sbjct: 344 SGT 346

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF 96
           + + NLKVL+L        +P + +N S L SL     Y   +   SLG+L+KL DL L+
Sbjct: 424 DPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILW 483

Query: 97  GNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149
            N  SG++P  L  L       L  N LTG I   +   T+L+ + L+ NQL G +P+S+
Sbjct: 484 LNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASL 543

Query: 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
             L NL  L L +N++S  G++   L N +SL  L L++N L
Sbjct: 544 GRLSNLAILKLGNNSIS--GNIPAELGNCQSLIWLDLNTNFL 583

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF 96
           + + NLKVL+L        +P + +N S L SL     Y   +   SLG+L+KL DL L+
Sbjct: 424 DPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILW 483

Query: 97  GNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149
            N  SG++P  L  L       L  N LTG I   +   T+L+ + L+ NQL G +P+S+
Sbjct: 484 LNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASL 543

Query: 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
             L NL  L L +N++S  G++   L N +SL  L L++N L
Sbjct: 544 GRLSNLAILKLGNNSIS--GNIPAELGNCQSLIWLDLNTNFL 583

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 9/117 (7%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHIL 134
           P LGNLT    LYL  N  +G +P  LG++ +L+YL       TG I  E+ KLT L  L
Sbjct: 301 PILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDL 360

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
            +A N LEG +P  +    NL +L++  N  SGT  +      LES+T L LSSN +
Sbjct: 361 NVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGT--IPRAFQKLESMTYLNLSSNNI 415

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
359490156	886	PREDICTED: receptor-like protein 12-like	0.732	0.188	0.347	3e-18
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.732	0.166	0.387	1e-16
359485822	993	PREDICTED: receptor-like protein 12-like	0.552	0.126	0.462	1e-16
359485824	973	PREDICTED: receptor-like protein 12-like	0.741	0.173	0.363	2e-15
224140511	894	predicted protein [Populus trichocarpa]	0.640	0.163	0.372	2e-15
390979602	743	hypothetical protein [Cryptomeria japoni	0.649	0.199	0.415	1e-14
225429912	967	PREDICTED: probably inactive leucine-ric	0.671	0.158	0.369	2e-14
147790309	838	hypothetical protein VITISV_009745 [Viti	0.662	0.180	0.382	2e-14
296085003	566	unnamed protein product [Vitis vinifera]	0.75	0.302	0.379	3e-14
224128143	923	predicted protein [Populus trichocarpa]	0.828	0.204	0.342	3e-14

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 111/239 (46%), Gaps = 72/239 (30%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSL------------------FS 68
           LQ P L  L + L +LK LHL QVN +ST+P+  ANLSSL                  F 
Sbjct: 163 LQKPGLRYLVQNLTHLKELHLRQVNISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQ 222

Query: 69  LLSL----IAYCKE--NFLPSLGNLTKLNDLYLFGNDFSGK------------------- 103
           L SL    + Y  +   +LP     + L  LYL G  FSG+                   
Sbjct: 223 LPSLQFLSVRYNPDLIGYLPEFQETSPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSC 282

Query: 104 -----VPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
                VP  LG L QL+YL       +G+I   +  LT+L  L L+ N LEG +P+S+FE
Sbjct: 283 NFTGLVPSPLGHLSQLSYLDLSNNFFSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFE 342

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG 210
           L NL+ L ++DN+L+GT +L                 N+LSLL  T  N  LP F ++G
Sbjct: 343 LVNLQYLSVADNSLNGTVEL-----------------NRLSLLGYTRTNVTLPKFKLLG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 105/183 (57%), Gaps = 16/183 (8%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF----LPSLGNLTKLNDLY 94
           +  L +L L   + +  +P   ANL+ L    + +     +F    L  +G  TKL  LY
Sbjct: 318 IPQLSLLDLSNNSFSGQIPSFMANLTQL----TYLDLSSNDFSVGTLAWVGKQTKLTYLY 373

Query: 95  LFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPS 147
           L   + +G++P SL ++ +L       N L G+I   +  LTQL  L L EN+LEG +PS
Sbjct: 374 LDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLEGPIPS 433

Query: 148 SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFT 207
           S+FEL NL++L L  N L+GT +L+M L  L++LT L+LS N+LSLL+ T  N  LP F 
Sbjct: 434 SLFELVNLQSLYLHSNYLTGTVELHM-LSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFK 492

Query: 208 IIG 210
           ++G
Sbjct: 493 LLG 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 8/134 (5%)

Query: 84  LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRL 136
           LG  TKL  LYL   + +G++P SL ++ +L       N L G+I   +  LTQL  L L
Sbjct: 360 LGEQTKLTILYLDQINLNGEIPSSLVNMSELTILNLSKNQLIGQIPSWLMNLTQLTELYL 419

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196
            EN+LEG +PSS+FEL NL+ L L  N L+GT +L+M L NL++LT L LS N++SLL+ 
Sbjct: 420 QENKLEGPIPSSLFELVNLQYLYLHSNYLTGTVELHM-LSNLKNLTDLQLSYNRISLLSY 478

Query: 197 TTVNTNLPNFTIIG 210
           T+ N  LP F ++G
Sbjct: 479 TSTNATLPKFKLLG 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 40/209 (19%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF---LPS-LGNLTKLND 92
           ++ + LK+L L   + +  +P +   L SL  L   I+ C  NF   +PS LG+LT+L  
Sbjct: 268 QETSPLKMLDLAGTSFSGELPTSIGRLGSLTELD--ISSC--NFTGSVPSSLGHLTQLYY 323

Query: 93  LYLFGNDFSGKVPDSLGDLLQLNYLT-------------------------------GEI 121
           L L  N FSG++P S+ +L QL YL+                               GEI
Sbjct: 324 LDLSNNHFSGQIPSSMANLTQLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEI 383

Query: 122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL 181
              +  ++QL+IL L++NQL G +PSS+FEL NL+ L L  N L+GT +L + L  L++L
Sbjct: 384 PFSLVNMSQLNILSLSDNQLSGQIPSSLFELVNLQGLYLLSNYLNGTVELQL-LSKLKNL 442

Query: 182 TALVLSSNKLSLLAGTTVNTNLPNFTIIG 210
             L LS N+LS L+ T  N  LP F  +G
Sbjct: 443 IYLQLSDNRLSFLSYTRTNATLPKFKHLG 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 95/177 (53%), Gaps = 31/177 (17%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLS------------------SLFS 68
           LQ+P L +L E L NL+VLHL  VN ++ +P    NLS                   +F 
Sbjct: 181 LQNPGLQHLVEALTNLEVLHLSGVNISAKIPQIMTNLSSLSSLSLRNCRLQGEFPMGIFQ 240

Query: 69  LLSL----IAYCK--ENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN------- 115
           L +L    I Y      +LP   + +KL  L L G +FSG++P+SLG+L  L        
Sbjct: 241 LPNLRLFSIRYNPYLTGYLPEFRSGSKLETLMLTGTNFSGQLPESLGNLKSLKEFHVAKC 300

Query: 116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172
           Y +G +   +  LTQL  L L++N+L G++P SI+ L+NL  LDLS+N  SG+ +LN
Sbjct: 301 YFSGVVPSSLGNLTQLFALFLSDNKLHGAIPESIYRLQNLEILDLSNNFFSGSLELN 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390979602|dbj|BAM21552.1| hypothetical protein [Cryptomeria japonica]

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 91/166 (54%), Gaps = 18/166 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN-----FLPSLGNLTKLNDL 93
           L +LK L+LG+ +    +P +  NLSSL  L     Y ++N      LP LG LT L++L
Sbjct: 167 LTSLKNLYLGRNSLTGKIPRSFKNLSSLVGL-----YLEDNDLTGTILPELGMLTHLHEL 221

Query: 94  YLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
           YL+GN  SG +P  LG+L  L       N   G I  E+  LT LH LRL EN L GS+P
Sbjct: 222 YLWGNRLSGSIPSFLGNLSSLTSLHLSTNQFQGLIPPELGMLTHLHELRLFENHLSGSIP 281

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           SS+  L  L  LDL  N LSG    + +   L +LT L L +N+L+
Sbjct: 282 SSLTNLSKLNILDLYSNQLSGHVPWD-IGTKLSNLTYLSLWANQLT 326

Source: Cryptomeria japonica

Species: Cryptomeria japonica

Genus: Cryptomeria

Family: Cupressaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429912|ref|XP_002281133.1| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera] gi|296081832|emb|CBI20837.3| unnamed protein product [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 94/184 (51%), Gaps = 31/184 (16%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFG 97
            + LKVL LG       +P + AN++SL   L+L +      +P  LG +  L  +YL  
Sbjct: 162 FSRLKVLDLGGNFLVGKIPNSIANITSL-EFLTLASNQLVGEIPRELGRMKSLKWIYLGY 220

Query: 98  NDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
           N+ SG +P  +G+L  LN+L       TGEI   +  L+ LH L L +N+L GS+P SIF
Sbjct: 221 NNLSGGIPKEIGELTSLNHLDLVYNNLTGEIPSSLGNLSDLHFLFLYQNKLSGSIPPSIF 280

Query: 151 ELRNLRALDLSDNNLSG----------------------TGDLNMVLLNLESLTALVLSS 188
           +L+ L +LDLSDN+LSG                      TG +   L +L  L  L L S
Sbjct: 281 DLKKLISLDLSDNSLSGEIPELVIQLQNLEILHLFANDFTGKIPRALASLPRLQILQLWS 340

Query: 189 NKLS 192
           NKLS
Sbjct: 341 NKLS 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790309|emb|CAN61202.1| hypothetical protein VITISV_009745 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 11/162 (6%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFG 97
            + LKVL LG       +P + AN++SL   L+L +      +P  +G +  L  +YL  
Sbjct: 163 FSRLKVLDLGGNFLVGKIPNSIANITSL-EFLTLASNQLVGEIPREIGRMKSLKWIYLGY 221

Query: 98  NDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
           N+ SG +P  +G+L  LN+L       TGEI   +  L+ LH L L +N+L GS+P SIF
Sbjct: 222 NNLSGGIPKEIGELTSLNHLDLVYNNLTGEIPSSLGNLSDLHFLFLYQNKLSGSIPPSIF 281

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           +L+ L +LDLSDN+LS  G++   L +  SL  + L SN  S
Sbjct: 282 DLKKLISLDLSDNSLS--GEVPKSLSDCRSLRRVRLQSNHFS 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085003|emb|CBI28418.3| unnamed protein product [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 97/182 (53%), Gaps = 11/182 (6%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLTKLNDLYLF 96
           +L+ L+ L+L     +  +P     LS L SL LS         LP   N + L  L L+
Sbjct: 71  QLSRLRSLNLSNSQFSGQIPSKLLALSKLVSLDLSSNPTYLTGHLPEFHNASHLKYLDLY 130

Query: 97  GNDFSGKVPDSLG--------DLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
              FSG++P S+G        D+   N+ +G +   +  LTQL  L L+ N  +G +PSS
Sbjct: 131 WTSFSGQLPASIGFLSSLKELDICSCNF-SGMVPTALGNLTQLTHLDLSSNSFKGPIPSS 189

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTI 208
           IFEL NL  L L  N LSGT +LNM L+ L++L  L LS N LSLL   ++N +LP   +
Sbjct: 190 IFELMNLDTLILRANKLSGTVELNM-LVKLKNLHKLGLSHNDLSLLTNNSLNGSLPRLRL 248

Query: 209 IG 210
           +G
Sbjct: 249 LG 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 117/248 (47%), Gaps = 59/248 (23%)

Query: 20  SNAMKTL-LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78
           S+A K L L S  L  LA+    L+ L L  VN +STVP A ANLSSL + L+L     +
Sbjct: 173 SSARKLLELGSFDLRRLAQNFTGLEQLDLSSVNISSTVPDALANLSSL-TFLNLEDCNLQ 231

Query: 79  NFLPS-LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------------------- 118
             +PS  G+LTKL  L L  N+FSG+VP SL +L QL  L+                   
Sbjct: 232 GLIPSSFGDLTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNK 291

Query: 119 ------------GEILVEIR------------------------KLTQLHILRLAENQLE 142
                       GEI + +R                         LTQL ++ L  N+L+
Sbjct: 292 IRALHLSDINLVGEIPLSLRNMTRIIQLHLSNNRLTGKIPLWISNLTQLTLVHLRHNELQ 351

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN 202
           G +P S+ +L NL  L L  N+LSGT + +M   +L+ LT L +  N L++L   + NT 
Sbjct: 352 GPIPESMSKLVNLEELKLEYNHLSGTIEFSM-FASLKHLTMLQIRRNNLTVLTNISDNTT 410

Query: 203 LPNFTIIG 210
           LP F  + 
Sbjct: 411 LPKFKYLA 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.587	0.119	0.395	3.9e-16
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.469	0.096	0.461	1.7e-15
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.473	0.127	0.444	1.7e-14
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.482	0.097	0.408	3.2e-14
TAIR|locus:2009288	966	AT1G34420 [Arabidopsis thalian	0.5	0.118	0.428	3.4e-14
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.526	0.147	0.426	3.4e-14
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.627	0.138	0.367	3.7e-14
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.600	0.143	0.385	5.4e-14
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.473	0.110	0.410	5.6e-14
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.587	0.142	0.36	1.8e-13

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 59/149 (39%), Positives = 84/149 (56%)

Query:    73 IAYCKENFL-----PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGE 120
             + Y  EN+L     P LGN+  + DL L  N  +G +P +LG+L  L       NYLTG 
Sbjct:   202 VLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGV 261

Query:   121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLES 180
             I  EI  +  +  L L++N+L GS+PSS+  L+NL  L L  N L  TG +   L N+ES
Sbjct:   262 IPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYL--TGGIPPKLGNIES 319

Query:   181 LTALVLSSNKLSLLAGTTVNTNLPNFTII 209
             +  L LS+NKL+    +++  NL N TI+
Sbjct:   320 MIDLELSNNKLTGSIPSSLG-NLKNLTIL 347

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 208 (78.3 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 54/117 (46%), Positives = 72/117 (61%)

Query:    81 LPS-LGNLTKLNDLYLFGNDFSGKVPDSLG------DL-LQLNYLTGEILVEIRKLTQLH 132
             +PS  G LTKL+ LYL GN FSG++P  LG      DL LQ N L GEI  E+  L+QL 
Sbjct:   300 IPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQ 359

Query:   133 ILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
              L L  N L G VP SI+++++L++L L  NNLSG  +L + +  L+ L +L L  N
Sbjct:   360 YLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSG--ELPVDMTELKQLVSLALYEN 414

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 52/117 (44%), Positives = 68/117 (58%)

Query:    83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
             SLGNL++L +L LF N   GK+PDS+GDL QL       N L GEI   +  L+ L  L 
Sbjct:   177 SLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLV 236

Query:   136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             L  NQL G VP+SI  L  LR +   +N+LSG  ++ +   NL  L+  VLSSN  +
Sbjct:   237 LTHNQLVGEVPASIGNLIELRVMSFENNSLSG--NIPISFANLTKLSIFVLSSNNFT 291

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 49/120 (40%), Positives = 72/120 (60%)

Query:    81 LPS-LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLH 132
             +PS +GN+  L  LYL+ N  +G +P  LG L ++       N L+GEI VE+ K+++L 
Sbjct:   293 IPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELR 352

Query:   133 ILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             +L L +N+L G +P+ + +LRNL  LDLS N+L  TG +     NL S+  L L  N LS
Sbjct:   353 LLYLFQNKLTGIIPNELSKLRNLAKLDLSINSL--TGPIPPGFQNLTSMRQLQLFHNSLS 410

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2009288 AT1G34420 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 57/133 (42%), Positives = 81/133 (60%)

Query:    82 PSLGNLTKLNDLYLFGNDFSGKVPDS---LGDLLQL----NYLTGEILVEIRKLTQLHIL 134
             PSL  L +L+++ L GN+ +G +PD+   L DL++L    N L G I V  RKL Q+  L
Sbjct:   458 PSLSQLKRLSNMNLQGNNLNGTIPDNIQNLEDLIELQLGQNQLRGRIPVMPRKL-QIS-L 515

Query:   135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
              L+ N  EGS+P+++ EL  L  LDLS+NN SG  ++   L  L SLT L+LS+N+L+  
Sbjct:   516 NLSYNLFEGSIPTTLSELDRLEVLDLSNNNFSG--EIPNFLSRLMSLTQLILSNNQLT-- 571

Query:   195 AGTTVNTNLPNFT 207
              G     N+P FT
Sbjct:   572 -G-----NIPRFT 578

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 194 (73.4 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 55/129 (42%), Positives = 72/129 (55%)

Query:    84 LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRL 136
             L  L++L  L L  N  SG++P +LG+L  L       N L+G I   + KLT L  L L
Sbjct:   122 LSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLAL 181

Query:   137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196
             AEN L GS+PSS  +LR L  L L+ NNLSG   +   + N+ SLT   + SNKLS    
Sbjct:   182 AENTLSGSIPSSFGQLRRLSFLSLAFNNLSGA--IPDPIWNISSLTIFEVISNKLSGTLP 239

Query:   197 TTVNTNLPN 205
             T   +NLP+
Sbjct:   240 TNAFSNLPS 248

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 57/155 (36%), Positives = 80/155 (51%)

Query:    83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
             SLG L +L  +YL+ N  +GK+P  LG +  L       N +TGEI +E+ +L  L +L 
Sbjct:   264 SLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLN 323

Query:   136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS--L 193
             L  NQL G +PS I EL NL  L+L  N+L G+  L + L     L  L +SSNKLS  +
Sbjct:   324 LMRNQLTGIIPSKIAELPNLEVLELWQNSLMGS--LPVHLGKNSPLKWLDVSSNKLSGDI 381

Query:   194 LAGTTVNTNLPNFTIIGSVHETLASSHIF-CTTKI 227
              +G   + NL    +  +         IF C T +
Sbjct:   382 PSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLV 416

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 59/153 (38%), Positives = 79/153 (51%)

Query:    80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLH 132
             F  S+G L+ L  L LF N FSG++P S+G+L  L       N  +G+I   I  L+QL 
Sbjct:   209 FPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLT 268

Query:   133 ILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
              L L  N   G +PSS   L  L  L + DN LSG  +   VLLNL  L+ L LS+NK +
Sbjct:   269 FLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSG--NFPNVLLNLTGLSLLSLSNNKFT 326

Query:   193 LLAGTTVNTNLPNFTIIGSVHETLASSHIFCTT 225
                GT      PN T + ++ +  AS + F  T
Sbjct:   327 ---GTLP----PNITSLSNLMDFDASDNAFTGT 352

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 48/117 (41%), Positives = 64/117 (54%)

Query:    82 PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHIL 134
             P LGNLT    LYL  N  +G +P  LG++ +L+YL       TG I  E+ KLT L  L
Sbjct:   301 PILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDL 360

Query:   135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
              +A N LEG +P  +    NL +L++  N  SGT  +      LES+T L LSSN +
Sbjct:   361 NVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGT--IPRAFQKLESMTYLNLSSNNI 415

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 54/150 (36%), Positives = 81/150 (54%)

Query:    83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-------GEILVEIRKLTQLHILR 135
             S+GNL+ L  L L  N FSG++P S+G+L  L +L+       G+I   I  L +L  L 
Sbjct:   192 SIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLY 251

Query:   136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
             L+ N   G +PSS   L  L  L +  N LSG   ++  LLNL  L+AL+LS N+ +   
Sbjct:   252 LSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPIS--LLNLTRLSALLLSHNQFT--- 306

Query:   196 GTTVNTNLPNFTIIGSVHETLASSHIFCTT 225
             GT  N    N +++ ++ +  AS++ F  T
Sbjct:   307 GTIPN----NISLLSNLMDFEASNNAFTGT 332

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 11/161 (6%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-LGNLTKLNDLYLFGN 98
           ++LKVL LG       +P +  NL+SL   L+L +      +P  LG +  L  +YL  N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSL-EFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 99  DFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
           + SG++P  +G L  LN+L       TG I   +  L  L  L L +N+L G +P SIF 
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           L+ L +LDLSDN+LS  G++  +++ L++L  L L SN  +
Sbjct: 283 LQKLISLDLSDNSLS--GEIPELVIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 33/185 (17%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG 97
           ++ +LK ++LG  N +  +PY    L+SL  L  +          SLGNL  L  L+L+ 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 98  NDFSGKVPDSLGDLLQL-------------------------------NYLTGEILVEIR 126
           N  SG +P S+  L +L                               N  TG+I V + 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVL 186
            L +L +L+L  N+  G +P ++ +  NL  LDLS NNL  TG++   L +  +L  L+L
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL--TGEIPEGLCSSGNLFKLIL 387

Query: 187 SSNKL 191
            SN L
Sbjct: 388 FSNSL 392

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 49/118 (41%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHI 133
           LP      +L +L L  N FSG VP  LG L +L       N L+GEI  E+    +L  
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 134 LRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
           L L+ NQL G +P+S  E+  L  LDLS N LSG    N  L N+ESL  + +S N L
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN--LGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 34/186 (18%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL--GNLTKLNDLYL 95
           +L  ++ ++L     +  +P      SS    L+L      NF  S+  G++  L  L L
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL---SNNNFTGSIPRGSIPNLETLDL 147

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
             N  SG++P+ +G    L       N L G+I   +  LT L  L LA NQL G +P  
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 149 IFELRNLRALDLSDNNLSG----------------------TGDLNMVLLNLESLTALVL 186
           + ++++L+ + L  NNLSG                      TG +   L NL++L  L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 187 SSNKLS 192
             NKLS
Sbjct: 268 YQNKLS 273

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 29  SPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-LGNL 87
           S  +  L  +L NL++LHL   N    +P A  +L  L  +L L +      +P  LG  
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL-QVLQLWSNKFSGEIPKNLGKH 355

Query: 88  TKLNDLYLFGNDFSGKVPDSL---GDLLQL----NYLTGEILVEIRKLTQLHILRLAENQ 140
             L  L L  N+ +G++P+ L   G+L +L    N L GEI   +     L  +RL +N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 141 LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             G +PS   +L  +  LD+S+NNL   G +N    ++ SL  L L+ NK  
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQ--GRINSRKWDMPSLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 63/200 (31%), Positives = 87/200 (43%), Gaps = 49/200 (24%)

Query: 30  PSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY-CKENFL----PSL 84
            SL NL     NL+ L L Q   +  +P       S+FSL  LI+    +N L    P L
Sbjct: 254 SSLGNLK----NLQYLFLYQNKLSGPIP------PSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 85  -GNLTKLNDLYLFGNDFSGKVPDSLGDL-----LQL--NYLTGEILVEIRKLTQLHILRL 136
              L  L  L+LF N+F+GK+P +L  L     LQL  N  +GEI   + K   L +L L
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 137 AENQL------------------------EGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172
           + N L                        EG +P S+   R+LR + L DN+ S  G+L 
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS--GELP 421

Query: 173 MVLLNLESLTALVLSSNKLS 192
                L  +  L +S+N L 
Sbjct: 422 SEFTKLPLVYFLDISNNNLQ 441

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 17/147 (11%)

Query: 60  SANLSSLFSLLSLIAY---CKENFLPSLG----NLTKLNDLYLFGNDFSGKVPDSLG--- 109
           S  L S F+ L L+ +      N    +     ++  L  L L  N F G +PDS G   
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

Query: 110 ----DLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165
               DL + N  +G +  ++  L++L  L+L+EN+L G +P  +   + L +LDLS N L
Sbjct: 477 LENLDLSR-NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 166 SGTGDLNMVLLNLESLTALVLSSNKLS 192
           S  G +      +  L+ L LS N+LS
Sbjct: 536 S--GQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 18/89 (20%)

Query: 80  FLPS-LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAE 138
           F+P+ +  L  L  + L GN   G +P SLG +                 T L +L L+ 
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-----------------TSLEVLDLSY 475

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLSG 167
           N   GS+P S+ +L +LR L+L+ N+LSG
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
            LG+L++L  L L  N  SG++PD L    +L       N L+G+I     ++  L  L 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGT 168
           L++NQL G +P ++  + +L  +++S N+L G+
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 17/68 (25%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQL 141
           PSLG++T L  L L  N F+G +P+SLG                 +LT L IL L  N L
Sbjct: 460 PSLGSITSLEVLDLSYNSFNGSIPESLG-----------------QLTSLRILNLNGNSL 502

Query: 142 EGSVPSSI 149
            G VP+++
Sbjct: 503 SGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 117 LTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL 176
           L G I  +I KL  L  + L+ N + G++P S+  + +L  LDLS N+ +G+  +   L 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLG 487

Query: 177 NLESLTALVLSSNKLS 192
            L SL  L L+ N LS
Sbjct: 488 QLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 117 LTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL-RNLRALDLSDNNLSGTGDLNMVL 175
           ++G+I   I +L  +  + L+ NQL G +P  IF    +LR L+LS+NN +G+    +  
Sbjct: 81  ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS----IPR 136

Query: 176 LNLESLTALVLSSNKLS 192
            ++ +L  L LS+N LS
Sbjct: 137 GSIPNLETLDLSNNMLS 153

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 138 ENQ-LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           +NQ L G +P+ I +LR+L++++LS N++   G++   L ++ SL  L LS N  +
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFN 479

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PLN03150	623	hypothetical protein; Provisional	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PLN03150	623	hypothetical protein; Provisional	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
PRK15386	426	type III secretion protein GogB; Provisional	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.77
KOG4308	478	consensus LRR-containing protein [Function unknown	95.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.57
KOG4308	478	consensus LRR-containing protein [Function unknown	93.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.68
smart00370	26	LRR Leucine-rich repeats, outliers.	91.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.38
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.59
KOG4341	483	consensus F-box protein containing LRR [General fu	89.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	88.85
KOG4341	483	consensus F-box protein containing LRR [General fu	88.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.43
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=5.6e-25  Score=204.57  Aligned_cols=211  Identities=29%  Similarity=0.388  Sum_probs=150.4

Q ss_pred             CcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      +++|.+....+..++.+++|++|++++|.    +|+.+.++++|++|++++|.+.+..|..+..+++|++|+  +++|.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l  224 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY--LGYNNL  224 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE--CcCCcc
Confidence            44555555566667777777777777765    466677777777777777777766777777777777777  777777


Q ss_pred             -CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCcccc
Q 041723           79 -NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI  149 (228)
Q Consensus        79 -~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  149 (228)
                       +.+| .++.+++|++|++++|.+++.+|..++.++.+       +.+.+.+|..++.+++|+.|++++|.+.+.+|..+
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence             4566 67777777777777777776777766666553       23445667777777777777777777776677777


Q ss_pred             ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      ..+++|+.|++++|.+++  .+|..+..+++|+.|++++|.+++..|.. +..+++|+.+++++|++++
T Consensus       305 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             cCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEe
Confidence            777777777777777776  66777777777777777777777776766 6777777777777777764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=6.2e-24  Score=197.64  Aligned_cols=210  Identities=29%  Similarity=0.357  Sum_probs=143.2

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.+....+..++.+++|++|++++|.    +|+.+.++++|++|++++|.+.+..|..+..+++|++|+  +++|.
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~  247 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD--LVYNN  247 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE--CcCce
Confidence            456777776777778888888888888876    567778888888888888888777787788888888888  88887


Q ss_pred             C-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 E-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      + +.+| .++.+++|+.|++++|.+.+.+|..++.++++       +.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus       248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            7 5666 77777888888888887777777776665553       3334566666666677777777777666666666


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                      +..+++|+.|++++|.+++  .+|..+..+.+|+.+++++|.+++..|.. ++.+++|+.+++++|.+
T Consensus       328 ~~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l  392 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSL  392 (968)
T ss_pred             HhcCCCCCEEECcCCCCcC--cCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEe
Confidence            6666666666666666665  55666666666666666666655544444 44444444444444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=4.5e-22  Score=167.48  Aligned_cols=214  Identities=21%  Similarity=0.191  Sum_probs=165.7

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh-----------H-----------------HHHhccCCCCeeecCCccCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL-----------A-----------------NLAEKLANLKVLHLGQVNTAS   54 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l-----------~-----------------~~~~~l~~L~~L~l~~n~~~~   54 (228)
                      ++.|++.+++..+|.++++|+.|+|..|.+           |                 ..|..+.++++|++..|+++.
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            456777777777777777777777777752           1                 134556677788888888777


Q ss_pred             CcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhh
Q 041723           55 TVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI  125 (228)
Q Consensus        55 ~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~  125 (228)
                      .-...+.++++|+.|+  +++|.+..+.  .+...++|++|++++|+++..-+..+..|.++       |+++...-..|
T Consensus       284 vn~g~lfgLt~L~~L~--lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLD--LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhcccccccchhhhhc--cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            7677778899999999  9999996665  78888999999999999984444556655553       33333333456


Q ss_pred             hcCCCCCEEeccCCcccccCc---cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723          126 RKLTQLHILRLAENQLEGSVP---SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN  202 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  202 (228)
                      ..+++|+.||++.|.+++.+.   ..|.++++|+.|.+.+|++..  .-..+|.++.+|++|+|.+|.+...-+.. |..
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~NaiaSIq~nA-Fe~  438 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGDNAIASIQPNA-FEP  438 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee--cchhhhccCcccceecCCCCcceeecccc-ccc
Confidence            788899999999999886654   357789999999999999984  33457889999999999999998887777 777


Q ss_pred             CCCcccccccccccccCccccccCC
Q 041723          203 LPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       203 l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      + .|.+|-     +.+..+.|+|.|
T Consensus       439 m-~Lk~Lv-----~nSssflCDCql  457 (873)
T KOG4194|consen  439 M-ELKELV-----MNSSSFLCDCQL  457 (873)
T ss_pred             c-hhhhhh-----hcccceEEeccH
Confidence            7 788888     888999999976

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.82  E-value=8.6e-21  Score=159.85  Aligned_cols=214  Identities=17%  Similarity=0.160  Sum_probs=146.5

Q ss_pred             CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +.+++|++..+....|.++++|++.++.+|.   +|.......+++.|++.+|.+.....++++.++.|++|+  ++.|.
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD--LSrN~  160 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD--LSRNL  160 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh--hhhch
Confidence            3578999999999999999999999999998   677777778899999999999988888999999999999  99999


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhhcCCCCCEEeccCC---------
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAEN---------  139 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n---------  139 (228)
                      ++.+|  .+..-.+++.|++++|.++..-...|.++.+       .|+++..-+..|.++++|+.|++..|         
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence            98887  7777788999999999887433334444333       12222111222223444444444333         


Q ss_pred             ---------------cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC
Q 041723          140 ---------------QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP  204 (228)
Q Consensus       140 ---------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  204 (228)
                                     .+...-.+.|..+.++++|++..|+++.  .-..|+.++..|++|+++.|.+...-+.. ++.++
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Wsftq  317 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--VNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQ  317 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--hhcccccccchhhhhccchhhhheeecch-hhhcc
Confidence                           3332233445566666666666666654  33445566666666666666666655555 66666


Q ss_pred             CcccccccccccccC
Q 041723          205 NFTIIGSVHETLASS  219 (228)
Q Consensus       205 ~L~~l~l~~n~~~~~  219 (228)
                      +|++|+|++|+++..
T Consensus       318 kL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  318 KLKELDLSSNRITRL  332 (873)
T ss_pred             cceeEeccccccccC
Confidence            666666666666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.80  E-value=1e-20  Score=152.65  Aligned_cols=215  Identities=21%  Similarity=0.218  Sum_probs=171.4

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCC-ccCCCCcchhccCCcchHHHHHhhhhc
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQ-VNTASTVPYASANLSSLFSLLSLIAYC   76 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~~~l~~~   76 (228)
                      .+..|.|+.+++.+|+.+.+|+.++|++|.|    |++|..+..+..|-+.+ |+++....++|.++..++.|.  +.-|
T Consensus        73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl--lNan  150 (498)
T KOG4237|consen   73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL--LNAN  150 (498)
T ss_pred             EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh--cChh
Confidence            3567899999999999999999999999984    67888888877766544 888887778888888888888  8888


Q ss_pred             CCCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhcccc----------------------------------------
Q 041723           77 KENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQ----------------------------------------  113 (228)
Q Consensus        77 ~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~----------------------------------------  113 (228)
                      .+.-++  .+..++++..|.+..|.+. .+++ .+..+..                                        
T Consensus       151 ~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~  229 (498)
T KOG4237|consen  151 HINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY  229 (498)
T ss_pred             hhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence            876665  7777788877777777665 4443 2222222                                        


Q ss_pred             ------ccc----------------------cccccc-hhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCc
Q 041723          114 ------LNY----------------------LTGEIL-VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN  164 (228)
Q Consensus       114 ------~~~----------------------l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (228)
                            .+.                      .++.-| ..|+++++|+.+++++|.++..-+.+|.+...+++|.+..|.
T Consensus       230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence                  000                      011222 357889999999999999997778899999999999999999


Q ss_pred             cccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          165 LSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       165 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      +..  .-...|.++..|+.|+|.+|+++...|.. |..+..|.++.     +-.+|+-|.|+|
T Consensus       310 l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~-----l~~Np~~CnC~l  364 (498)
T KOG4237|consen  310 LEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLN-----LLSNPFNCNCRL  364 (498)
T ss_pred             HHH--HHHHhhhccccceeeeecCCeeEEEeccc-ccccceeeeee-----hccCcccCccch
Confidence            985  44567899999999999999999988888 99999999999     788899999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=3.4e-21  Score=163.74  Aligned_cols=211  Identities=21%  Similarity=0.241  Sum_probs=161.1

Q ss_pred             CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +++++|.|.+++...+-+++.|-+|+++.|.   +|+.+..+.+|+.|++++|.+...-.+.+..+++|++|.  +++.+
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh--ms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH--MSNTQ  208 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh--ccccc
Confidence            4678999999999999999999999999997   799999999999999999987643334455566777777  88877


Q ss_pred             C--CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 E--NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~--~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      -  ..+| .+.++.+|..+|++.|.+. .+|+.+..+.++.++.      ..+-...+.+.+|++|++|.|+++ .+|..
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH
Confidence            6  6777 8888889999999999887 8888887777755442      122234456677888888888887 67888


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +.++++|+.|.+.+|.++- +-+|..++.+..|+++...+|.+. .+|.- ++.|++|+.|.|++|++-.
T Consensus       287 vcKL~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN~LE-lVPEg-lcRC~kL~kL~L~~NrLiT  353 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANNKLE-LVPEG-LCRCVKLQKLKLDHNRLIT  353 (1255)
T ss_pred             HhhhHHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhccccc-cCchh-hhhhHHHHHhcccccceee
Confidence            8888888888887777663 256777777777777777777775 34555 7777777777777777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=2.8e-19  Score=152.23  Aligned_cols=214  Identities=25%  Similarity=0.278  Sum_probs=153.3

Q ss_pred             CCcCCccc-ccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKK-KIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~-~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|..+ ...|.....+++++-|.+....   +|+.++.+++|+.|.+++|+++. +...++.++.|+.+.  +..|+
T Consensus        13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~--~R~N~   89 (1255)
T KOG0444|consen   13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI--VRDNN   89 (1255)
T ss_pred             cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh--hhccc
Confidence            46777777 6778888888889888888876   78999999999999999998875 566678889999999  99998


Q ss_pred             C--CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------------------------------ccccccccch
Q 041723           78 E--NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------------------------------LNYLTGEILV  123 (228)
Q Consensus        78 ~--~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------------------------------~~~l~~~~~~  123 (228)
                      +  +.+| ++..+..|.+||++.|+++ ..|..+..-+.                               .|++ ..+|.
T Consensus        90 LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPP  167 (1255)
T KOG0444|consen   90 LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPP  167 (1255)
T ss_pred             cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCH
Confidence            8  7788 8888999999999998887 67766544333                               1111 34555


Q ss_pred             hhhcCCCCCEEeccCCccc-------------------------ccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723          124 EIRKLTQLHILRLAENQLE-------------------------GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus       124 ~~~~l~~L~~L~ls~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .+..+..|++|.+++|.+.                         ..+|..+..+.+|..+|++.|.+.   .+|.-+..+
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---~vPecly~l  244 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---IVPECLYKL  244 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC---cchHHHhhh
Confidence            5666666666666666532                         124556667777777777777776   667777777


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      ++|+.|+|++|+++.....  .....+|++|++|+|.++..| .|.|+
T Consensus       245 ~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP-~avcK  289 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLP-DAVCK  289 (1255)
T ss_pred             hhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccch-HHHhh
Confidence            7777777777777654332  344556666677777666655 44444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=4.8e-20  Score=149.29  Aligned_cols=196  Identities=23%  Similarity=0.267  Sum_probs=137.3

Q ss_pred             hcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCc
Q 041723           16 YGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLN   91 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~   91 (228)
                      +.++.-++.+...+|+   +|++++.+..++.++.++|++. .+|+.+..++.+..++  .++|.+..+| +++.+..++
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~--~s~n~~~el~~~i~~~~~l~  140 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD--CSSNELKELPDSIGRLLDLE  140 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh--ccccceeecCchHHHHhhhh
Confidence            4455556666666665   5666666666666666666654 3556666666666666  6666665555 666666666


Q ss_pred             EEEeeCCcCCCCCCChhhcccc-----------------------cccc------ccccchhhhcCCCCCEEeccCCccc
Q 041723           92 DLYLFGNDFSGKVPDSLGDLLQ-----------------------LNYL------TGEILVEIRKLTQLHILRLAENQLE  142 (228)
Q Consensus        92 ~L~l~~n~l~~~~p~~~~~l~~-----------------------~~~l------~~~~~~~~~~l~~L~~L~ls~n~l~  142 (228)
                      .++..+|++. .+|.+++++..                       +.++      -+++|.+++.+.+|+.|++..|.+.
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence            6666666665 55555544433                       3332      2678888888888888888888887


Q ss_pred             ccCccccccCCCCCEEEccCCccccCCCcchhhh-cCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL-NLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                       .+| .|+++..|+++++..|.+.   .+|.... .+.++.+||+++|+++.. |.. ++-+.+|.+||+|+|.+++-|.
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~---~lpae~~~~L~~l~vLDLRdNklke~-Pde-~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE---MLPAEHLKHLNSLLVLDLRDNKLKEV-PDE-ICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH---hhHHHHhcccccceeeeccccccccC-chH-HHHhhhhhhhcccCCccccCCc
Confidence             566 6888888888888888887   5676655 788899999999999865 666 7888889999999999988765


Q ss_pred             c
Q 041723          222 F  222 (228)
Q Consensus       222 ~  222 (228)
                      .
T Consensus       293 s  293 (565)
T KOG0472|consen  293 S  293 (565)
T ss_pred             c
Confidence            4

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1e-19  Score=132.26  Aligned_cols=158  Identities=28%  Similarity=0.382  Sum_probs=112.6

Q ss_pred             hhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCC
Q 041723           15 AYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKL   90 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L   90 (228)
                      .+.++++++.+.+++|.   +|+.+..+.+|++|++++|+++ ..|.+++.+++|+.|+  ++-|++..+| .|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~ln--vgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILN--VGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhhee--cchhhhhcCccccCCCchh
Confidence            34455677778888886   5777888888888888888775 3677788888888888  8878877777 77888888


Q ss_pred             cEEEeeCCcCCC-CCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723           91 NDLYLFGNDFSG-KVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG  169 (228)
Q Consensus        91 ~~L~l~~n~l~~-~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  169 (228)
                      +.||+.+|++.. .+|                 ..|..|..|..|+++.|.+. .+|...+++.+|+.|.+.+|.+-   
T Consensus       105 evldltynnl~e~~lp-----------------gnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll---  163 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLP-----------------GNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL---  163 (264)
T ss_pred             hhhhccccccccccCC-----------------cchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh---
Confidence            888888877763 334                 34455666667777777775 56666777777777777777665   


Q ss_pred             CcchhhhcCCCCCEEEccCCccccccC
Q 041723          170 DLNMVLLNLESLTALVLSSNKLSLLAG  196 (228)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~  196 (228)
                      .+|..++.+..|+.|.+.+|+++..+|
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceeeecCh
Confidence            567777777777777777777765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=7.8e-19  Score=142.37  Aligned_cols=206  Identities=25%  Similarity=0.272  Sum_probs=151.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHh-ccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAE-KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +++.|++..++  .|++++.+.+++.+.|.   +|++.. ++.++.+||+++|++. +.|+.+..+++|+.|+  +++|.
T Consensus       212 yL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD--lSNN~  286 (565)
T KOG0472|consen  212 YLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD--LSNND  286 (565)
T ss_pred             HhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc--ccCCc
Confidence            45666666665  67777777777777776   566555 7888888888888885 4788888888888888  88888


Q ss_pred             CCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhc------------------cc-------------c------------
Q 041723           78 ENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD------------------LL-------------Q------------  113 (228)
Q Consensus        78 ~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~------------------l~-------------~------------  113 (228)
                      ++.+| .++++ .|+.|-+.+|.+. .+-..+-+                  +.             +            
T Consensus       287 is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t  364 (565)
T KOG0472|consen  287 ISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT  364 (565)
T ss_pred             cccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence            88888 88888 7888888887763 11100000                  00             0            


Q ss_pred             -------------------------------------------------------ccccccccchhhhcCCCCCEEeccC
Q 041723          114 -------------------------------------------------------LNYLTGEILVEIRKLTQLHILRLAE  138 (228)
Q Consensus       114 -------------------------------------------------------~~~l~~~~~~~~~~l~~L~~L~ls~  138 (228)
                                                                             .+...+.+|..+..+++|..|++++
T Consensus       365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N  444 (565)
T KOG0472|consen  365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN  444 (565)
T ss_pred             hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence                                                                   1111234556677888999999999


Q ss_pred             CcccccCccccccCCCCCEEEccCCccccC--------------------CCc-chhhhcCCCCCEEEccCCccccccCc
Q 041723          139 NQLEGSVPSSIFELRNLRALDLSDNNLSGT--------------------GDL-NMVLLNLESLTALVLSSNKLSLLAGT  197 (228)
Q Consensus       139 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~  197 (228)
                      |.+. .+|..++.+..|+.++++.|++...                    ..+ |..+.++.+|.+|+|..|.+... |.
T Consensus       445 N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp  522 (565)
T KOG0472|consen  445 NLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PP  522 (565)
T ss_pred             chhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Ch
Confidence            9998 6899999999999999999887642                    123 23477788999999999999865 55


Q ss_pred             cccCCCCCcccccccccccc
Q 041723          198 TVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       198 ~~~~~l~~L~~l~l~~n~~~  217 (228)
                      . ++++.+|++|++.+|.+.
T Consensus       523 ~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  523 I-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             h-hccccceeEEEecCCccC
Confidence            5 899999999998888876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.5e-19  Score=128.86  Aligned_cols=159  Identities=26%  Similarity=0.296  Sum_probs=141.0

Q ss_pred             HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723           36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL  114 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  114 (228)
                      +.++.+++.|.+++|.++. .|+.++.+.+|+.|+  +++|+++.+| .+.++++|++|++..|++. .+|.+|      
T Consensus        29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln--~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgf------   98 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLN--LSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGF------   98 (264)
T ss_pred             ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhh--cccchhhhcChhhhhchhhhheecchhhhh-cCcccc------
Confidence            4456788899999999975 677899999999999  9999999999 9999999999999999997 667664      


Q ss_pred             cccccccchhhhcCCCCCEEeccCCcccc-cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723          115 NYLTGEILVEIRKLTQLHILRLAENQLEG-SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       115 ~~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~  193 (228)
                                 +.++.|+.||+++|.+.. .+|+.|..|..|+.|.+++|.+.   .+|+.++.+.+|+.|.+.+|.+-.
T Consensus        99 -----------gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen   99 -----------GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             -----------CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhh
Confidence                       567789999999999864 46889999999999999999998   789999999999999999999875


Q ss_pred             ccCccccCCCCCcccccccccccccCc
Q 041723          194 LAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       194 ~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                       .|.. ++.+..|++|.+.+|+++..|
T Consensus       165 -lpke-ig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  165 -LPKE-IGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             -CcHH-HHHHHHHHHHhcccceeeecC
Confidence             4777 899999999999999998655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=5.4e-17  Score=143.07  Aligned_cols=186  Identities=27%  Similarity=0.381  Sum_probs=137.9

Q ss_pred             ccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEe
Q 041723           20 SNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYL   95 (228)
Q Consensus        20 ~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l   95 (228)
                      .++++++++++.   +|++++.+.+|+.++..+|+++ ..|..+....+|+.++  +.+|.++.+| ....++.|++|++
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~--~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS--AAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH--hhhhhhhhCCCcccccceeeeeee
Confidence            489999999997   7999999999999999999995 4788899999999999  9999999999 6667999999999


Q ss_pred             eCCcCCCCCCChhhcccc---------------------------------ccccccccchhhhcCCCCCEEeccCCccc
Q 041723           96 FGNDFSGKVPDSLGDLLQ---------------------------------LNYLTGEILVEIRKLTQLHILRLAENQLE  142 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~---------------------------------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~  142 (228)
                      ..|.+. .+|+.+.....                                 .|++++....-+..+.+|+.|++++|++.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            999997 77764332111                                 44554444445678889999999999998


Q ss_pred             ccCcc-ccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          143 GSVPS-SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       143 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                       .+|. .+.++..|++|++++|+++   .+|..+-.+..|++|...+|++... | + +..++.|+.+|++.|.+
T Consensus       397 -~fpas~~~kle~LeeL~LSGNkL~---~Lp~tva~~~~L~tL~ahsN~l~~f-P-e-~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  397 -SFPASKLRKLEELEELNLSGNKLT---TLPDTVANLGRLHTLRAHSNQLLSF-P-E-LAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             -cCCHHHHhchHHhHHHhcccchhh---hhhHHHHhhhhhHHHhhcCCceeec-h-h-hhhcCcceEEecccchh
Confidence             6665 4678899999999999998   4555554444444444444444432 2 2 34444444444444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.52  E-value=5.1e-16  Score=125.79  Aligned_cols=195  Identities=26%  Similarity=0.337  Sum_probs=150.3

Q ss_pred             cccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcEE
Q 041723           21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLNDL   93 (228)
Q Consensus        21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~L   93 (228)
                      ..+.++|..|.   +| .+|..+.+|++||+++|.++..-|++|.++..+.+|-  +.+ |+|..+|  .|.++..++-|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv--lyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLV--LYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHH--hhcCCchhhhhhhHhhhHHHHHHH
Confidence            66888999997   44 5899999999999999999999999999999998887  666 8999999  89999999999


Q ss_pred             EeeCCcCCCCCCChhhcccccccc------ccccch-hhhcCCCCCEEeccCCc--------------------------
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYL------TGEILV-EIRKLTQLHILRLAENQ--------------------------  140 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l------~~~~~~-~~~~l~~L~~L~ls~n~--------------------------  140 (228)
                      .+.-|.+.-...+.+..++..+-+      ...+++ .++.+..++++.+..|.                          
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            999999873344556666664222      112222 23333333333333332                          


Q ss_pred             -----------------------------------ccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEE
Q 041723          141 -----------------------------------LEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL  184 (228)
Q Consensus       141 -----------------------------------l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L  184 (228)
                                                         ..+..| ..|.++++|+.+++++|.+++  .-+.+|.+...++.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQEL  303 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhh
Confidence                                               001112 247899999999999999996  567899999999999


Q ss_pred             EccCCccccccCccccCCCCCcccccccccccccCc
Q 041723          185 VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      .|..|++....... |.++..|++|+|++|+|+...
T Consensus       304 ~L~~N~l~~v~~~~-f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGM-FQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             hcCcchHHHHHHHh-hhccccceeeeecCCeeEEEe
Confidence            99999998877777 999999999999999998643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.51  E-value=7.9e-16  Score=129.72  Aligned_cols=179  Identities=27%  Similarity=0.331  Sum_probs=125.0

Q ss_pred             cccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723           17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND   92 (228)
Q Consensus        17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~   92 (228)
                      -.+.....++++.|.   +|..++.+-.|+.+.+..|.+. .+|..+..+..|.+++  ++.|+++.+| .++.|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~--ls~NqlS~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLD--LSSNQLSHLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhh--hccchhhcCChhhhcCc-cee
Confidence            344555666677665   5667777777777777776664 3666777777777777  7777777777 666666 777


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN  172 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p  172 (228)
                      |.+++|+++ .+|..                 ++...+|..++.+.|.+. .+|..++.+.+|+.+++..|.+.   .+|
T Consensus       148 li~sNNkl~-~lp~~-----------------ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~---~lp  205 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEE-----------------IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE---DLP  205 (722)
T ss_pred             EEEecCccc-cCCcc-----------------cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh---hCC
Confidence            777777776 55554                 445566777777777777 66777777777777777777776   566


Q ss_pred             hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc-cc
Q 041723          173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF-CT  224 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~  224 (228)
                      +.+.. -.|..||+++|+++.. |-. |.++..|++|.|.+|.+.+.|.. |+
T Consensus       206 ~El~~-LpLi~lDfScNkis~i-Pv~-fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  206 EELCS-LPLIRLDFSCNKISYL-PVD-FRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             HHHhC-CceeeeecccCceeec-chh-hhhhhhheeeeeccCCCCCChHHHHh
Confidence            66663 3477777777777754 555 67777777777777777776655 44

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=3.4e-14  Score=127.25  Aligned_cols=158  Identities=25%  Similarity=0.283  Sum_probs=105.4

Q ss_pred             CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----cc
Q 041723           40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LN  115 (228)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~  115 (228)
                      ++|++|++++|.+.+ +|..   ..+|+.|+  +++|.+..+|.+.  .+|+.|++++|+++ .+|.....+..    .|
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~--Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N  372 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPAL---PSELCKLW--AYNNQLTSLPTLP--SGLQELSVSDNQLA-SLPTLPSELYKLWAYNN  372 (788)
T ss_pred             cccceeECCCCcccc-CCCC---cccccccc--cccCccccccccc--cccceEecCCCccC-CCCCCCcccceehhhcc
Confidence            345555555555543 2221   12355555  6666665555221  46889999999988 56654433333    23


Q ss_pred             ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc
Q 041723          116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA  195 (228)
Q Consensus       116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  195 (228)
                      .+. .+|..   ..+|+.|++++|.+. .+|..   +.+|+.|++++|.++   .+|...   .+|+.|++++|+++. +
T Consensus       373 ~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls---sIP~l~---~~L~~L~Ls~NqLt~-L  437 (788)
T PRK15387        373 RLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT---SLPMLP---SGLLSLSVYRNQLTR-L  437 (788)
T ss_pred             ccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC---CCCcch---hhhhhhhhccCcccc-c
Confidence            333 34432   357899999999998 46653   467999999999998   466532   467889999999985 5


Q ss_pred             CccccCCCCCcccccccccccccCccc
Q 041723          196 GTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       196 ~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      |.. ++++++|+.+++++|++++....
T Consensus       438 P~s-l~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        438 PES-LIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ChH-HhhccCCCeEECCCCCCCchHHH
Confidence            777 88999999999999999865443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=2.8e-14  Score=128.13  Aligned_cols=188  Identities=23%  Similarity=0.286  Sum_probs=105.3

Q ss_pred             CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      +++|+++.++....   .+|++|++++|.   +|..+.  ..|+.|++++|.+.. +|..+.  .+|+.|+  +++|++.
T Consensus       206 Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~--Ls~N~L~  275 (754)
T PRK15370        206 LDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLD--LFHNKIS  275 (754)
T ss_pred             ecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEE--CcCCccC
Confidence            34555555543322   256666666665   344333  356666666666653 444332  3567777  7777776


Q ss_pred             CCc-cccCCCCCcEEEeeCCcCCCCCCChhhc-ccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCC
Q 041723           80 FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD-LLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR  153 (228)
Q Consensus        80 ~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  153 (228)
                      .+| .+.  .+|+.|++++|.++ .+|..+.. +..    .|.+. .+|..+  .++|+.|++++|.++ .+|..+.  +
T Consensus       276 ~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~  346 (754)
T PRK15370        276 CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP--P  346 (754)
T ss_pred             ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cCChhhc--C
Confidence            666 443  46777788777776 45543221 111    22332 233322  246777777777776 4565442  5


Q ss_pred             CCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +|+.|++++|.++   .+|..+.  +.|++|++++|.++..++ . +.  ..|+.|++++|+++.
T Consensus       347 sL~~L~Ls~N~L~---~LP~~lp--~~L~~LdLs~N~Lt~LP~-~-l~--~sL~~LdLs~N~L~~  402 (754)
T PRK15370        347 ELQVLDVSKNQIT---VLPETLP--PTITTLDVSRNALTNLPE-N-LP--AALQIMQASRNNLVR  402 (754)
T ss_pred             cccEEECCCCCCC---cCChhhc--CCcCEEECCCCcCCCCCH-h-HH--HHHHHHhhccCCccc
Confidence            7777777777776   4555442  467777777777765432 2 21  246666666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.51  E-value=1.3e-15  Score=124.96  Aligned_cols=203  Identities=19%  Similarity=0.132  Sum_probs=119.4

Q ss_pred             hcccccccccccCCCCh----------HHHHhccCCCCeeecCCccCCCCcchhccCCcc---hHHHHHhhhhcCCCC--
Q 041723           16 YGTASNAMKTLLQSPSL----------ANLAEKLANLKVLHLGQVNTASTVPYASANLSS---LFSLLSLIAYCKENF--   80 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~~~l~~~~~~~--   80 (228)
                      +...+++++++++++.+          +..+.++.+|++|++++|.+....+..+..+.+   |++|+  +++|.++.  
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~--ls~~~~~~~~  124 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK--LNNNGLGDRG  124 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEE--eeCCccchHH
Confidence            33444566666665532          234555667777777776665544444444444   66666  66666631  


Q ss_pred             ---Cc-cccCC-CCCcEEEeeCCcCCCCCCC----hhhccccc-------ccccc----ccchhhhcCCCCCEEeccCCc
Q 041723           81 ---LP-SLGNL-TKLNDLYLFGNDFSGKVPD----SLGDLLQL-------NYLTG----EILVEIRKLTQLHILRLAENQ  140 (228)
Q Consensus        81 ---~p-~~~~l-~~L~~L~l~~n~l~~~~p~----~~~~l~~~-------~~l~~----~~~~~~~~l~~L~~L~ls~n~  140 (228)
                         +. .+..+ ++|+.|++++|.+++....    .+..+...       +.+.+    .++..+...++|++|++++|.
T Consensus       125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence               11 33444 6667777777766532111    12111111       11221    223345566789999999998


Q ss_pred             ccccC----ccccccCCCCCEEEccCCccccCCCcchhh-hc----CCCCCEEEccCCccccc----cCccccCCCCCcc
Q 041723          141 LEGSV----PSSIFELRNLRALDLSDNNLSGTGDLNMVL-LN----LESLTALVLSSNKLSLL----AGTTVNTNLPNFT  207 (228)
Q Consensus       141 l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~-~~----l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~  207 (228)
                      +.+..    ...+..+++|+.|++++|.+++  .....+ ..    ...|+++++++|.+++.    .... +..+++|+
T Consensus       205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~  281 (319)
T cd00116         205 LTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLL  281 (319)
T ss_pred             cChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCcc
Confidence            76432    3345677889999999998875  222222 12    36899999999988632    2223 45668899


Q ss_pred             cccccccccccCcccc
Q 041723          208 IIGSVHETLASSHIFC  223 (228)
Q Consensus       208 ~l~l~~n~~~~~~~~~  223 (228)
                      ++++++|.+++.+..+
T Consensus       282 ~l~l~~N~l~~~~~~~  297 (319)
T cd00116         282 ELDLRGNKFGEEGAQL  297 (319)
T ss_pred             EEECCCCCCcHHHHHH
Confidence            9999999998775443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.50  E-value=9.1e-14  Score=131.40  Aligned_cols=93  Identities=22%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             CcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      +.+++++.+. ..+..+++|+.++++++.    +| .+..+++|+.|++++|.....+|..+..+++|+.|+  +++|..
T Consensus       618 L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~--L~~c~~  693 (1153)
T PLN03210        618 MQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD--MSRCEN  693 (1153)
T ss_pred             CcCccccccc-cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe--CCCCCC
Confidence            3444444442 234566777777776653    33 355667777777777655556666677777777777  776643


Q ss_pred             -CCCccccCCCCCcEEEeeCCc
Q 041723           79 -NFLPSLGNLTKLNDLYLFGND   99 (228)
Q Consensus        79 -~~~p~~~~l~~L~~L~l~~n~   99 (228)
                       ..+|...++++|+.|++++|.
T Consensus       694 L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        694 LEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             cCccCCcCCCCCCCEEeCCCCC
Confidence             666622255666666666554

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.47  E-value=8.2e-15  Score=129.52  Aligned_cols=177  Identities=27%  Similarity=0.300  Sum_probs=122.0

Q ss_pred             hhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhcc-------------------------CCcc
Q 041723           14 AAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASA-------------------------NLSS   65 (228)
Q Consensus        14 ~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~l~~   65 (228)
                      ..+...++++++....|+   +|+....++.|+.||+..|.+....+..+.                         .+..
T Consensus       281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~  360 (1081)
T KOG0618|consen  281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA  360 (1081)
T ss_pred             HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence            334444556666666665   455666677888888888776542221111                         1245


Q ss_pred             hHHHHHhhhhcCC--CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccc
Q 041723           66 LFSLLSLIAYCKE--NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEG  143 (228)
Q Consensus        66 L~~L~~~l~~~~~--~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~  143 (228)
                      |+.|+  +.+|.+  ..+|.+.++..|+.|++++|++. .+|+.                .+.+++.|++|++|||.++ 
T Consensus       361 Lq~Ly--lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas----------------~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  361 LQELY--LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPAS----------------KLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             HHHHH--HhcCcccccchhhhccccceeeeeecccccc-cCCHH----------------HHhchHHhHHHhcccchhh-
Confidence            77777  777777  56666777777888888888776 56644                3567788888888888888 


Q ss_pred             cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccc
Q 041723          144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET  215 (228)
Q Consensus       144 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~  215 (228)
                      .+|.....+..|+.|....|.+.   .+| .+..++.|+.+|++.|.++...... ..--++|++||+++|.
T Consensus       421 ~Lp~tva~~~~L~tL~ahsN~l~---~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  421 TLPDTVANLGRLHTLRAHSNQLL---SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHHhhhhhHHHhhcCCcee---ech-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence            67888888888888888888887   566 5777888888888888887643322 2222678888888877

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=6.1e-15  Score=120.98  Aligned_cols=199  Identities=21%  Similarity=0.237  Sum_probs=131.2

Q ss_pred             hhhcccccccccccCCCCh----HHHHhccCC---CCeeecCCccCCCC----cchhccCC-cchHHHHHhhhhcCCC--
Q 041723           14 AAYGTASNAMKTLLQSPSL----ANLAEKLAN---LKVLHLGQVNTAST----VPYASANL-SSLFSLLSLIAYCKEN--   79 (228)
Q Consensus        14 ~~~~~l~~l~~l~l~~~~l----~~~~~~l~~---L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~~~l~~~~~~--   79 (228)
                      ..++.++++++++++++.+    +..+..+..   |++|++++|.+.+.    +...+..+ ++|+.|+  +++|.+.  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~--L~~n~l~~~  152 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV--LGRNRLEGA  152 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE--cCCCcCCch
Confidence            4566677888888888873    344555554   88888888877632    33455666 7888888  8888874  


Q ss_pred             ---CCc-cccCCCCCcEEEeeCCcCCCC----CCChhhcccccc-------ccc----cccchhhhcCCCCCEEeccCCc
Q 041723           80 ---FLP-SLGNLTKLNDLYLFGNDFSGK----VPDSLGDLLQLN-------YLT----GEILVEIRKLTQLHILRLAENQ  140 (228)
Q Consensus        80 ---~~p-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~~~-------~l~----~~~~~~~~~l~~L~~L~ls~n~  140 (228)
                         .++ .+..+++|+.|++++|.+++.    ++..+...+.+.       .+.    ..++..+..+++|++|++++|.
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence               223 455667888888888887742    122222112222       222    1233455678899999999999


Q ss_pred             ccccCccccc-----cCCCCCEEEccCCcccc--CCCcchhhhcCCCCCEEEccCCccccc----cCccccCCC-CCccc
Q 041723          141 LEGSVPSSIF-----ELRNLRALDLSDNNLSG--TGDLNMVLLNLESLTALVLSSNKLSLL----AGTTVNTNL-PNFTI  208 (228)
Q Consensus       141 l~~~~~~~~~-----~l~~L~~L~l~~n~~~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~  208 (228)
                      +.+.....+.     ..+.|+.+++++|.+++  ...+...+..++.|+.+++++|.++..    .+.. +... +.+++
T Consensus       233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~~  311 (319)
T cd00116         233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES-LLEPGNELES  311 (319)
T ss_pred             CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH-HhhcCCchhh
Confidence            8753332222     24799999999999873  123445566778999999999999865    3333 3334 77888


Q ss_pred             ccccccc
Q 041723          209 IGSVHET  215 (228)
Q Consensus       209 l~l~~n~  215 (228)
                      +++.+|.
T Consensus       312 ~~~~~~~  318 (319)
T cd00116         312 LWVKDDS  318 (319)
T ss_pred             cccCCCC
Confidence            8865553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.45  E-value=4.3e-13  Score=126.86  Aligned_cols=188  Identities=21%  Similarity=0.279  Sum_probs=117.8

Q ss_pred             hhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCccccCCCC
Q 041723           15 AYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLPSLGNLTK   89 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p~~~~l~~   89 (228)
                      .++.+++|+.|++++|.    +|..+..+++|+.|++++|.....+|..+ .+++|+.|+  +++|.. ..+|.+  ..+
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~--Lsgc~~L~~~p~~--~~n  726 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN--LSGCSRLKSFPDI--STN  726 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe--CCCCCCccccccc--cCC
Confidence            47788899999999875    78899999999999999986556666654 678888888  888765 555522  245


Q ss_pred             CcEEEeeCCcCCCCCCChh--hccc----------------------------cc-------cccccccchhhhcCCCCC
Q 041723           90 LNDLYLFGNDFSGKVPDSL--GDLL----------------------------QL-------NYLTGEILVEIRKLTQLH  132 (228)
Q Consensus        90 L~~L~l~~n~l~~~~p~~~--~~l~----------------------------~~-------~~l~~~~~~~~~~l~~L~  132 (228)
                      |+.|++++|.+. .+|..+  .++.                            .+       +...+.+|..++.+++|+
T Consensus       727 L~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~  805 (1153)
T PLN03210        727 ISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE  805 (1153)
T ss_pred             cCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence            677777777765 455432  0110                            00       111234677777888888


Q ss_pred             EEeccCCcccccCccccccCCCCCEEEcc---------------------CCccccCCCcchhhhcCCCCCEEEccCC-c
Q 041723          133 ILRLAENQLEGSVPSSIFELRNLRALDLS---------------------DNNLSGTGDLNMVLLNLESLTALVLSSN-K  190 (228)
Q Consensus       133 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~~~~~~~~p~~~~~l~~L~~L~L~~n-~  190 (228)
                      .|++++|...+.+|..+ .+++|+.|+++                     +|.++   .+|.++..+++|+.|++++| .
T Consensus       806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~---~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE---EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc---cChHHHhcCCCCCEEECCCCCC
Confidence            88888775433555433 34455555554                     44444   45666666667777777653 3


Q ss_pred             cccccCccccCCCCCccccccccc
Q 041723          191 LSLLAGTTVNTNLPNFTIIGSVHE  214 (228)
Q Consensus       191 l~~~~~~~~~~~l~~L~~l~l~~n  214 (228)
                      +.. ++.. ...++.|+.++++++
T Consensus       882 L~~-l~~~-~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        882 LQR-VSLN-ISKLKHLETVDFSDC  903 (1153)
T ss_pred             cCc-cCcc-cccccCCCeeecCCC
Confidence            333 3333 445555555555443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.42  E-value=2.7e-13  Score=121.81  Aligned_cols=191  Identities=21%  Similarity=0.260  Sum_probs=121.8

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++|.++.++. .+.  .+|+.+++++|.   +|..+.  ..|+.|++++|++.. +|..+.  ++|+.|+  +++|.+
T Consensus       226 ~Ls~N~LtsLP~-~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~--Ls~N~L  295 (754)
T PRK15370        226 YANSNQLTSIPA-TLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLS--VYDNSI  295 (754)
T ss_pred             ECCCCccccCCh-hhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEE--CCCCcc
Confidence            455666666543 232  267777787776   444443  467777777777764 454332  3677777  777777


Q ss_pred             CCCc-cccCCCCCcEEEeeCCcCCCCCCChhh-cccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccC
Q 041723           79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLG-DLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL  152 (228)
Q Consensus        79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  152 (228)
                      ..+| .+.  ++|+.|++++|.++ .+|..+. .|..    .+.+. .+|..+.  ++|+.|++++|.+. .+|..+  .
T Consensus       296 t~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p  366 (754)
T PRK15370        296 RTLPAHLP--SGITHLNVQSNSLT-ALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--P  366 (754)
T ss_pred             ccCcccch--hhHHHHHhcCCccc-cCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--c
Confidence            6666 332  35666777777666 3443221 1111    12222 2444332  68999999999998 577655  3


Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc---ccCCCCCcccccccccccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~  217 (228)
                      ++|+.|++++|.++   .+|+.+.  ..|+.|++++|++... |..   ....++.+..+++.+|.++
T Consensus       367 ~~L~~LdLs~N~Lt---~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 PTITTLDVSRNALT---NLPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCcCEEECCCCcCC---CCCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence            68999999999988   5676654  3688899999999854 332   1445688889998888875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.37  E-value=1.1e-12  Score=117.74  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=76.3

Q ss_pred             CcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHH------------
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLL------------   70 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~------------   70 (228)
                      ++++.++.++. .+.  .+++.|++.+|.+.......++|++|++++|.++.. |..   .++|+.|+            
T Consensus       208 Ls~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~~Lp~l  280 (788)
T PRK15387        208 VGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLTHLPAL  280 (788)
T ss_pred             cCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchhhhhhc
Confidence            45556665543 333  267778888777433222356788888888877643 322   23344444            


Q ss_pred             ------HhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCc
Q 041723           71 ------SLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQ  140 (228)
Q Consensus        71 ------~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~  140 (228)
                            +.+++|++..+|.  ..++|+.|++++|.++ .+|.....+..    .|.+. .+|.   ...+|+.|++++|.
T Consensus       281 p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~  353 (788)
T PRK15387        281 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQ  353 (788)
T ss_pred             hhhcCEEECcCCccccccc--cccccceeECCCCccc-cCCCCcccccccccccCccc-cccc---cccccceEecCCCc
Confidence                  0045555544442  1356788888888777 44443222222    12222 2332   11367888888888


Q ss_pred             ccccCccccccCCCCCEEEccCCccc
Q 041723          141 LEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus       141 l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      ++ .+|..   ..+|+.|++++|.++
T Consensus       354 Ls-~LP~l---p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        354 LA-SLPTL---PSELYKLWAYNNRLT  375 (788)
T ss_pred             cC-CCCCC---Ccccceehhhccccc
Confidence            77 45532   233444444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.9e-13  Score=115.57  Aligned_cols=187  Identities=26%  Similarity=0.274  Sum_probs=153.8

Q ss_pred             cchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCC
Q 041723           11 IATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTK   89 (228)
Q Consensus        11 ~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~   89 (228)
                      .+.+.+.+--.|.-..++..+.+.+-..+..-...|++.|++. ++|..++.+-.|+.+.  ++.|.+..+| .++.+..
T Consensus        46 leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~li--Ly~n~~r~ip~~i~~L~~  122 (722)
T KOG0532|consen   46 LEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLI--LYHNCIRTIPEAICNLEA  122 (722)
T ss_pred             HHHHhhhcccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHH--HHhccceecchhhhhhhH
Confidence            3444555544555555555555555577888888999999985 5788888889999999  9999998999 9999999


Q ss_pred             CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723           90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG  169 (228)
Q Consensus        90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  169 (228)
                      |++++++.|++. .+|..+..+                 + |+.+-+++|.++ .+|..++...+|..+|.+.|.+.   
T Consensus       123 lt~l~ls~NqlS-~lp~~lC~l-----------------p-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~---  179 (722)
T KOG0532|consen  123 LTFLDLSSNQLS-HLPDGLCDL-----------------P-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ---  179 (722)
T ss_pred             HHHhhhccchhh-cCChhhhcC-----------------c-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---
Confidence            999999999998 778765433                 3 889999999998 78999999999999999999998   


Q ss_pred             CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      .+|..++++.+|+.+.+..|.+... |.+ ++.++ |..||+|.|++...| .|.++|
T Consensus       180 slpsql~~l~slr~l~vrRn~l~~l-p~E-l~~Lp-Li~lDfScNkis~iP-v~fr~m  233 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRRNHLEDL-PEE-LCSLP-LIRLDFSCNKISYLP-VDFRKM  233 (722)
T ss_pred             hchHHhhhHHHHHHHHHhhhhhhhC-CHH-HhCCc-eeeeecccCceeecc-hhhhhh
Confidence            6899999999999999999999866 445 56555 999999999999988 566554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=4.7e-12  Score=94.51  Aligned_cols=125  Identities=28%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             CcchHHHHHhhhhcCCCCCcccc-CCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcc
Q 041723           63 LSSLFSLLSLIAYCKENFLPSLG-NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQL  141 (228)
Q Consensus        63 l~~L~~L~~~l~~~~~~~~p~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l  141 (228)
                      ..+++.|+  +++|.+..+..++ .+.+|+.|++++|.++ .++                  .+..++.|+.|++++|.+
T Consensus        18 ~~~~~~L~--L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~------------------~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   18 PVKLRELN--LRGNQISTIENLGATLDKLEVLDLSNNQIT-KLE------------------GLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T------------------T----TT--EEE--SS--
T ss_pred             cccccccc--ccccccccccchhhhhcCCCEEECCCCCCc-ccc------------------CccChhhhhhcccCCCCC
Confidence            34567777  7777776666444 4677777888887776 332                  234567777888888887


Q ss_pred             cccCcccc-ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc--cccCCCCCccccc
Q 041723          142 EGSVPSSI-FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT--TVNTNLPNFTIIG  210 (228)
Q Consensus       142 ~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~l~  210 (228)
                      + .+...+ ..+++|+.|++++|.+.++..+ ..+..+++|+.|++.+|+++...--  .++..+|+|+.||
T Consensus        77 ~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   77 S-SISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             C-ccccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            7 344333 3577788888888877765444 3466777788888888887654210  1255677777777

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.1e-11  Score=104.96  Aligned_cols=172  Identities=33%  Similarity=0.425  Sum_probs=94.1

Q ss_pred             ccccccccccCCCC---hHHHHhccC-CCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723           18 TASNAMKTLLQSPS---LANLAEKLA-NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND   92 (228)
Q Consensus        18 ~l~~l~~l~l~~~~---l~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~   92 (228)
                      .++.+..+++.++.   +|+....+. +|++|++++|.+.. +|..+..+++|+.|+  ++.|++..+| ..+..+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~--l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLD--LSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccc--cCCchhhhhhhhhhhhhhhhh
Confidence            33455555555554   444555553 66666666665543 334455566666666  6666665555 3335566666


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN  172 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p  172 (228)
                      |++++|.+. .+|..                 +.....|+.+.+++|.+. ..+..+..+.++..+.+.+|.+.   .++
T Consensus       191 L~ls~N~i~-~l~~~-----------------~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~---~~~  248 (394)
T COG4886         191 LDLSGNKIS-DLPPE-----------------IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE---DLP  248 (394)
T ss_pred             eeccCCccc-cCchh-----------------hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee---ecc
Confidence            666666665 44432                 223344666666666433 34444555566666666666554   234


Q ss_pred             hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ..+..+..++.+++++|+++....   +....+++.+++++|.+.
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence            555556666666666666655433   445666666666665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=4.1e-11  Score=89.42  Aligned_cols=122  Identities=29%  Similarity=0.420  Sum_probs=43.7

Q ss_pred             hhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhh-cCCCCCEEeccCCcccccCcccccc
Q 041723           73 IAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIR-KLTQLHILRLAENQLEGSVPSSIFE  151 (228)
Q Consensus        73 l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~  151 (228)
                      +..+.+...+.+.+..++++|++.+|.++ .+. .                 ++ .+.+|+.|++++|.++ .++ .+..
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~-----------------L~~~l~~L~~L~Ls~N~I~-~l~-~l~~   62 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQIS-TIE-N-----------------LGATLDKLEVLDLSNNQIT-KLE-GLPG   62 (175)
T ss_dssp             ----------------------------------S-------------------TT-TT--EEE-TTS--S---T-T---
T ss_pred             ccccccccccccccccccccccccccccc-ccc-c-----------------hhhhhcCCCEEECCCCCCc-ccc-CccC
Confidence            33445566666667778999999999997 332 2                 22 4678999999999998 454 5888


Q ss_pred             CCCCCEEEccCCccccCCCcchhh-hcCCCCCEEEccCCccccccC-ccccCCCCCcccccccccccccC
Q 041723          152 LRNLRALDLSDNNLSGTGDLNMVL-LNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       152 l~~L~~L~l~~n~~~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      +++|+.|++++|.++   .+.+.+ ..+++|++|++++|++..... .. +..+++|++|++.+|.+...
T Consensus        63 L~~L~~L~L~~N~I~---~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   63 LPRLKTLDLSNNRIS---SISEGLDKNLPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TT--EEE--SS------S-CHHHHHH-TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-GGGGS
T ss_pred             hhhhhhcccCCCCCC---ccccchHHhCCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCcccch
Confidence            999999999999999   455444 468999999999999986533 33 77899999999999988754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=5.4e-12  Score=99.75  Aligned_cols=130  Identities=29%  Similarity=0.302  Sum_probs=105.6

Q ss_pred             cchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc
Q 041723           64 SSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE  142 (228)
Q Consensus        64 ~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~  142 (228)
                      ..|+.++  +++|.+..+. ++.-.|+++.|++++|++. .+.                  .++.+++|++||+|+|.++
T Consensus       284 q~LtelD--LS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~------------------nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELD--LSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQ------------------NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhcc--ccccchhhhhhhhhhccceeEEecccccee-eeh------------------hhhhcccceEeecccchhH
Confidence            4688888  8888888777 7777888888999888886 222                  3567889999999999998


Q ss_pred             ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                       ...++-.++-+++.|.+++|.+.+   + ..++.+-+|..|++++|++.....-..++++|+|+++.+.+|.+...
T Consensus       343 -~~~Gwh~KLGNIKtL~La~N~iE~---L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  343 -ECVGWHLKLGNIKTLKLAQNKIET---L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             -hhhhhHhhhcCEeeeehhhhhHhh---h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence             677888899999999999999863   3 44788889999999999997654322389999999999888888653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=9.7e-12  Score=102.33  Aligned_cols=84  Identities=18%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             hcccccccccccCCCChH-----HHHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCc---ccc
Q 041723           16 YGTASNAMKTLLQSPSLA-----NLAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLP---SLG   85 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l~-----~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~   85 (228)
                      -.++++|+.+.+..+++.     .....|++++.||++.|-+...  +..-...+|+|+.|+  ++.|.+..+.   .-.
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN--ls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN--LSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc--cccccccCCccccchh
Confidence            345677888888887632     2456788888888888865543  335567788888888  8888883332   333


Q ss_pred             CCCCCcEEEeeCCcCC
Q 041723           86 NLTKLNDLYLFGNDFS  101 (228)
Q Consensus        86 ~l~~L~~L~l~~n~l~  101 (228)
                      .++.|+.|.++.|+++
T Consensus       195 ~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLS  210 (505)
T ss_pred             hhhhhheEEeccCCCC
Confidence            5778888888888886

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=2.7e-10  Score=101.60  Aligned_cols=94  Identities=30%  Similarity=0.364  Sum_probs=79.5

Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                      +.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++  .+|..+..+++|+.|+|++|.+++.+|..
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCCcccccCChH
Confidence            3444556788899999999999998999899999999999999999998  89999999999999999999999998887


Q ss_pred             ccCC-CCCcccccccccc
Q 041723          199 VNTN-LPNFTIIGSVHET  215 (228)
Q Consensus       199 ~~~~-l~~L~~l~l~~n~  215 (228)
                       +.. ..++..+++.+|.
T Consensus       510 -l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        510 -LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             -HhhccccCceEEecCCc
Confidence             554 3456677766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=5.2e-12  Score=99.83  Aligned_cols=132  Identities=26%  Similarity=0.266  Sum_probs=108.6

Q ss_pred             cCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723           39 LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT  118 (228)
Q Consensus        39 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~  118 (228)
                      -+.|+++|+++|.++ .+..+..-.|+++.|+  +++|++..+..++.+++|+.||+++|.++ .+.             
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~--lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~-------------  345 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLI--LSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECV-------------  345 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEe--ccccceeeehhhhhcccceEeecccchhH-hhh-------------
Confidence            357999999999886 4777888899999999  99999987777889999999999999887 222             


Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                          .+-.++.++++|.+++|.+. . -..++++.+|..||+++|++...++. ..+++++.|+++.|.+|++.+.
T Consensus       346 ----Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  346 ----GWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ----hhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCcccc
Confidence                12346678899999999986 3 34588999999999999999854232 4578899999999999999865

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.2e-10  Score=98.57  Aligned_cols=171  Identities=32%  Similarity=0.376  Sum_probs=137.2

Q ss_pred             ccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCc-chHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCC
Q 041723           24 KTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLS-SLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGN   98 (228)
Q Consensus        24 ~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n   98 (228)
                      .+....+.+   ...+..+..++.+++.+|.+.. +++....+. +|+.|+  +++|.+..+| .++.++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~--l~~N~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELD--LSDNKIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhccccc--ccccchhhhhhhhhccccccccccCCc
Confidence            355666654   3455566789999999988875 555566664 899999  9999998887 8888999999999999


Q ss_pred             cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723           99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .++ .+|..                 .+..+.|+.+++++|.+. .+|.....+..|+++.+++|...   ..+..+..+
T Consensus       174 ~l~-~l~~~-----------------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~---~~~~~~~~~  231 (394)
T COG4886         174 DLS-DLPKL-----------------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII---ELLSSLSNL  231 (394)
T ss_pred             hhh-hhhhh-----------------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce---ecchhhhhc
Confidence            998 55533                 236778999999999999 67877777888999999999644   567778889


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      ..+..+.+.+|++... +.. ++.+++++.+++++|.+++.+.
T Consensus       232 ~~l~~l~l~~n~~~~~-~~~-~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         232 KNLSGLELSNNKLEDL-PES-IGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             ccccccccCCceeeec-cch-hccccccceecccccccccccc
Confidence            9999999999999754 445 7789999999999999998764

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=7.6e-10  Score=98.71  Aligned_cols=107  Identities=28%  Similarity=0.436  Sum_probs=79.4

Q ss_pred             hHHHHHhhhhcCC-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccc
Q 041723           66 LFSLLSLIAYCKE-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEG  143 (228)
Q Consensus        66 L~~L~~~l~~~~~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~  143 (228)
                      ++.|+  +++|.+ +.+| .++.+++|+.|++++|.+.|.+|                 ..++.+++|+.|++++|.+++
T Consensus       420 v~~L~--L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-----------------~~~~~l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        420 IDGLG--LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-----------------PSLGSITSLEVLDLSYNSFNG  480 (623)
T ss_pred             EEEEE--CCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-----------------hHHhCCCCCCEEECCCCCCCC
Confidence            44556  666666 5566 66667777777777776665555                 345677888999999999988


Q ss_pred             cCccccccCCCCCEEEccCCccccCCCcchhhhcC-CCCCEEEccCCcccc
Q 041723          144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL-ESLTALVLSSNKLSL  193 (228)
Q Consensus       144 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l-~~L~~L~L~~n~l~~  193 (228)
                      .+|..++.+++|+.|++++|.+++  .+|..+... .++..+++.+|....
T Consensus       481 ~iP~~l~~L~~L~~L~Ls~N~l~g--~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        481 SIPESLGQLTSLRILNLNGNSLSG--RVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCchHHhcCCCCCEEECcCCcccc--cCChHHhhccccCceEEecCCcccc
Confidence            888888899999999999998887  888877653 466778888886543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=9e-11  Score=96.73  Aligned_cols=182  Identities=21%  Similarity=0.207  Sum_probs=128.7

Q ss_pred             hhcccccccccccCCCChH------HHHhccCCCCeeecCCccCCCCcch-hccCCcchHHHHHhhhhcCCC--CCc-cc
Q 041723           15 AYGTASNAMKTLLQSPSLA------NLAEKLANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKEN--FLP-SL   84 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~------~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~~l~~~~~~--~~p-~~   84 (228)
                      ....+++.+.|++++|-+.      .....+++|+.|+++.|++..-... .-..+++|+.|.  ++.|.++  .+- ..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~--l~~CGls~k~V~~~~  218 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV--LNSCGLSWKDVQWIL  218 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE--eccCCCCHHHHHHHH
Confidence            4567889999999999743      4567899999999999987643221 123568899999  9999994  333 56


Q ss_pred             cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccC
Q 041723           85 GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSD  162 (228)
Q Consensus        85 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~  162 (228)
                      ..+|+|+.|++.+|..-  .....               ...-++.|+.|++++|.+. ..+  ...+.++.|+.|+++.
T Consensus       219 ~~fPsl~~L~L~~N~~~--~~~~~---------------~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEII--LIKAT---------------STKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             HhCCcHHHhhhhccccc--ceecc---------------hhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence            67899999999999521  11111               1223456888999999886 344  4567888899999999


Q ss_pred             CccccCCCcchh-----hhcCCCCCEEEccCCccccccC-ccccCCCCCccccccccccccc
Q 041723          163 NNLSGTGDLNMV-----LLNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       163 n~~~~~~~~p~~-----~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +.+.+. ..|+.     ...+++|++|+++.|++.+... .. +..+++|..+.+..|+++.
T Consensus       281 tgi~si-~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  281 TGIASI-AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cCcchh-cCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhcccccccc
Confidence            888864 33442     3456889999999999865432 22 4556777777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=1.6e-10  Score=92.80  Aligned_cols=199  Identities=17%  Similarity=0.153  Sum_probs=122.9

Q ss_pred             hhhcccccccccccCCCC-------hH-------HHHhccCCCCeeecCCccCCCCcchhc----cCCcchHHHHHhhhh
Q 041723           14 AAYGTASNAMKTLLQSPS-------LA-------NLAEKLANLKVLHLGQVNTASTVPYAS----ANLSSLFSLLSLIAY   75 (228)
Q Consensus        14 ~~~~~l~~l~~l~l~~~~-------l~-------~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~~~l~~   75 (228)
                      ..+.+.++|+..++++--       +|       +++..+++|++|||++|.+....++.+    ..+..|++|+  +.+
T Consensus        52 ~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~--L~N  129 (382)
T KOG1909|consen   52 KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY--LNN  129 (382)
T ss_pred             HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh--hhc
Confidence            445566677777776541       44       355567799999999998765544433    4567899999  999


Q ss_pred             cCCCCCc---------------cccCCCCCcEEEeeCCcCCCCCCCh-----hhccccc-------ccc--cc--ccchh
Q 041723           76 CKENFLP---------------SLGNLTKLNDLYLFGNDFSGKVPDS-----LGDLLQL-------NYL--TG--EILVE  124 (228)
Q Consensus        76 ~~~~~~p---------------~~~~l~~L~~L~l~~n~l~~~~p~~-----~~~l~~~-------~~l--~~--~~~~~  124 (228)
                      |.++..-               ..++-+.|+++...+|++. ..+..     +...+..       |.+  .|  .+...
T Consensus       130 ~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea  208 (382)
T KOG1909|consen  130 CGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA  208 (382)
T ss_pred             CCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence            9883221               3345678999999999886 33321     1111111       111  01  22344


Q ss_pred             hhcCCCCCEEeccCCcccccC----ccccccCCCCCEEEccCCccccCC--Ccchhh-hcCCCCCEEEccCCcccccc--
Q 041723          125 IRKLTQLHILRLAENQLEGSV----PSSIFELRNLRALDLSDNNLSGTG--DLNMVL-LNLESLTALVLSSNKLSLLA--  195 (228)
Q Consensus       125 ~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~--~~p~~~-~~l~~L~~L~L~~n~l~~~~--  195 (228)
                      +..+++|+.||+..|.++...    ...+..+++|+.+++++|.+..-+  .+-..+ ...++|+++.+.+|-++..-  
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            567778888888888775322    234566777888888888776511  111222 23567888888888776431  


Q ss_pred             --CccccCCCCCccccccccccc
Q 041723          196 --GTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       196 --~~~~~~~l~~L~~l~l~~n~~  216 (228)
                        ... ....+.|..|++++|++
T Consensus       289 ~la~~-~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  289 ALAAC-MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHH-HhcchhhHHhcCCcccc
Confidence              112 34577788888888887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.88  E-value=1.7e-09  Score=86.97  Aligned_cols=204  Identities=18%  Similarity=0.205  Sum_probs=143.3

Q ss_pred             hhcccccccccccCCCC--------hHHHHhccCCCCeeecCCc---cCCCCcch-------hccCCcchHHHHHhhhhc
Q 041723           15 AYGTASNAMKTLLQSPS--------LANLAEKLANLKVLHLGQV---NTASTVPY-------ASANLSSLFSLLSLIAYC   76 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~--------l~~~~~~l~~L~~L~l~~n---~~~~~~~~-------~~~~l~~L~~L~~~l~~~   76 (228)
                      .......++++++++|.        +.+.+...++|++.++++-   +....+|+       ++...++|++++  +++|
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld--LSDN  102 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD--LSDN  102 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee--cccc
Confidence            34556688999999996        6678888899999999874   33333443       344668999999  9999


Q ss_pred             CC--CCCc----cccCCCCCcEEEeeCCcCCCCCCChhhc----ccc----------------ccccc----cccchhhh
Q 041723           77 KE--NFLP----SLGNLTKLNDLYLFGNDFSGKVPDSLGD----LLQ----------------LNYLT----GEILVEIR  126 (228)
Q Consensus        77 ~~--~~~p----~~~~l~~L~~L~l~~n~l~~~~p~~~~~----l~~----------------~~~l~----~~~~~~~~  126 (228)
                      .+  ..++    .+.++..|++|++.+|++...--..++.    +..                .|++.    ..+...++
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            99  3333    5567899999999999986211111111    111                22332    12344567


Q ss_pred             cCCCCCEEeccCCcccccC----ccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc--
Q 041723          127 KLTQLHILRLAENQLEGSV----PSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT--  198 (228)
Q Consensus       127 ~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--  198 (228)
                      ..+.|+.+.+..|.|....    ...+..+++|+.||+.+|.++..  ..+-..+..+++|+.+++++|.++......  
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            7789999999999986332    24578999999999999998841  123345667789999999999997654332  


Q ss_pred             --ccCCCCCcccccccccccccCc
Q 041723          199 --VNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       199 --~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                        +-...|.|+++.+.+|.++...
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHH
Confidence              1245789999999999987543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.4e-09  Score=67.06  Aligned_cols=59  Identities=41%  Similarity=0.466  Sum_probs=27.1

Q ss_pred             CCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCc
Q 041723          130 QLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK  190 (228)
Q Consensus       130 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~  190 (228)
                      +|++|++++|.++...+..|..+++|+.+++++|.++.  ..+..|.++++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555543222344445555555555555442  223344444445555544443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=2.7e-09  Score=65.81  Aligned_cols=61  Identities=34%  Similarity=0.437  Sum_probs=54.3

Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                      ++|+.|++++|.++.  ..+.+|.++++|+++++++|.++...+.. +.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCcC
Confidence            578999999999994  33468899999999999999999888888 99999999999999875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.4e-09  Score=92.69  Aligned_cols=83  Identities=19%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             hhcccccccccccCCCChHH--H-HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCc
Q 041723           15 AYGTASNAMKTLLQSPSLAN--L-AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLN   91 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~   91 (228)
                      .++.++++..+++.+|.+..  . +..+.+|++|++++|.++...+  +..++.|+.|+  +.+|.+..++.+..+..|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~--l~~N~i~~~~~~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN--LSGNLISDISGLESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhe--eccCcchhccCCccchhhh
Confidence            36666777777777777432  3 6667777777777777765432  45566677777  7777777777666677777


Q ss_pred             EEEeeCCcCC
Q 041723           92 DLYLFGNDFS  101 (228)
Q Consensus        92 ~L~l~~n~l~  101 (228)
                      .+++++|.+.
T Consensus       166 ~l~l~~n~i~  175 (414)
T KOG0531|consen  166 LLDLSYNRIV  175 (414)
T ss_pred             cccCCcchhh
Confidence            7777777776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=7.4e-09  Score=88.30  Aligned_cols=175  Identities=26%  Similarity=0.324  Sum_probs=108.1

Q ss_pred             ccccccccccCCCChH---HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEE
Q 041723           18 TASNAMKTLLQSPSLA---NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLY   94 (228)
Q Consensus        18 ~l~~l~~l~l~~~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~   94 (228)
                      .+..+..+.+..|.+.   ..+..+++|..|++.+|.+... ...+..+++|++|+  +++|.++.+..+..+..|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~--ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLD--LSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchhee--ccccccccccchhhccchhhhe
Confidence            4456666667777654   3477889999999999988763 33367789999999  9999998888777888899999


Q ss_pred             eeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccc-cccCCCCCEEEccCCccccCC----
Q 041723           95 LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS-IFELRNLRALDLSDNNLSGTG----  169 (228)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~----  169 (228)
                      +.+|.+. .+..                  +..+..|+.+++++|.+.. +... ...+.+++.+.+.+|.+....    
T Consensus       147 l~~N~i~-~~~~------------------~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~  206 (414)
T KOG0531|consen  147 LSGNLIS-DISG------------------LESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDL  206 (414)
T ss_pred             eccCcch-hccC------------------CccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHH
Confidence            9999987 3331                  1223444555555555542 2111 234444455555554443210    


Q ss_pred             ---------------CcchhhhcCC--CCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          170 ---------------DLNMVLLNLE--SLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       170 ---------------~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                                     .+-+ +..+.  .|+.+++++|++.... .. +..+..+..++++.|++..
T Consensus       207 ~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~-~~-~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  207 LKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSP-EG-LENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             HHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccc-cc-ccccccccccchhhccccc
Confidence                           1111 11112  2667777777776432 23 4566777777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.43  E-value=1.7e-07  Score=86.21  Aligned_cols=84  Identities=23%  Similarity=0.235  Sum_probs=40.7

Q ss_pred             ccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc-c
Q 041723           10 KIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP-S   83 (228)
Q Consensus        10 ~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p-~   83 (228)
                      .+....|..++.|+.|++++|.    +|+.++.+-+|++|++++..+. .+|..+.++..|.+|+  +..+.. ..+| .
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln--l~~~~~l~~~~~i  637 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN--LEVTGRLESIPGI  637 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec--cccccccccccch
Confidence            3333444455555555555443    4555555555555555554443 3455555555555555  544443 3333 3


Q ss_pred             ccCCCCCcEEEee
Q 041723           84 LGNLTKLNDLYLF   96 (228)
Q Consensus        84 ~~~l~~L~~L~l~   96 (228)
                      ...+.+|++|.+.
T Consensus       638 ~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  638 LLELQSLRVLRLP  650 (889)
T ss_pred             hhhcccccEEEee
Confidence            3335555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=7.2e-09  Score=90.72  Aligned_cols=20  Identities=10%  Similarity=-0.137  Sum_probs=15.1

Q ss_pred             hhhhcccccccccccCCCCh
Q 041723           13 TAAYGTASNAMKTLLQSPSL   32 (228)
Q Consensus        13 ~~~~~~l~~l~~l~l~~~~l   32 (228)
                      +..+..+..|+.|.+.++++
T Consensus       102 pi~ifpF~sLr~LElrg~~L  121 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDL  121 (1096)
T ss_pred             CceeccccceeeEEecCcch
Confidence            55666777888888888874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=9.4e-09  Score=90.03  Aligned_cols=170  Identities=26%  Similarity=0.248  Sum_probs=91.4

Q ss_pred             HHHhccCCCCeeecCCccCCCCcchhccCC----------cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCC
Q 041723           34 NLAEKLANLKVLHLGQVNTASTVPYASANL----------SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGK  103 (228)
Q Consensus        34 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l----------~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~  103 (228)
                      -.+..+..|++|.+.++.+...  ..+.++          .+++.|.-.++.|.- .+..--.+..|.+.+.++|.+. .
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascgg-d~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGG-DISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             ceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhcc-ccccchhhhhHhhhhcchhhHH-h
Confidence            3566788999999999877531  111111          112211101222221 1110011234556666666665 4


Q ss_pred             CCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccc-cccCCCCCEEEccCCccccCCCcchhh
Q 041723          104 VPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS-IFELRNLRALDLSDNNLSGTGDLNMVL  175 (228)
Q Consensus       104 ~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~p~~~  175 (228)
                      +...+.-++..       |++..  .+.+..+++|++||+++|.++ .+|.. ..++. |+.|.+++|.++.   + ..+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L-~gi  250 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---L-RGI  250 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---h-hhH
Confidence            44333333321       22211  125667788888888888887 55542 22333 8888888888773   3 236


Q ss_pred             hcCCCCCEEEccCCccccccCccccCCCCCcccccccccc
Q 041723          176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET  215 (228)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~  215 (228)
                      .++.+|+.||++.|-+.+-..-..+..+..|+.|.|.+|.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            6777888888888877654322214456777778843333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.4e-08  Score=79.17  Aligned_cols=164  Identities=20%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             cccccccCCCCh-----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCC--c-cccCCCCCc
Q 041723           21 NAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFL--P-SLGNLTKLN   91 (228)
Q Consensus        21 ~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~--p-~~~~l~~L~   91 (228)
                      .+++++++...+     ...+..|++|+.|.+.++++...+...+++-.+|+.|+  ++.|.- ...  . .+.++..|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ln--lsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLN--LSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeec--cccccccchhHHHHHHHhhhhHh
Confidence            578888887763     45678899999999999999888888899999999999  988865 333  3 778899999


Q ss_pred             EEEeeCCcCCCCCCC-hhh----cccccc------ccc-cccchhhhcCCCCCEEeccCCcc-cccCccccccCCCCCEE
Q 041723           92 DLYLFGNDFSGKVPD-SLG----DLLQLN------YLT-GEILVEIRKLTQLHILRLAENQL-EGSVPSSIFELRNLRAL  158 (228)
Q Consensus        92 ~L~l~~n~l~~~~p~-~~~----~l~~~~------~l~-~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~L  158 (228)
                      .|++++|.+...... .+.    .++++|      .+. .-+..-..+++++.+||+|.|.. +......|.+++.|+++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            999999987632211 111    111111      110 11111124566777777776543 22222345566677777


Q ss_pred             EccCCccccCCCcchh---hhcCCCCCEEEccCCc
Q 041723          159 DLSDNNLSGTGDLNMV---LLNLESLTALVLSSNK  190 (228)
Q Consensus       159 ~l~~n~~~~~~~~p~~---~~~l~~L~~L~L~~n~  190 (228)
                      .++.|..    .+|..   +...+.|.+|++-++-
T Consensus       344 SlsRCY~----i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYD----IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcC----CChHHeeeeccCcceEEEEecccc
Confidence            7776653    23332   3455667777665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=1e-07  Score=67.41  Aligned_cols=103  Identities=19%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             ccccccccCCCC---hHHH---HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723           20 SNAMKTLLQSPS---LANL---AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND   92 (228)
Q Consensus        20 ~~l~~l~l~~~~---l~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~   92 (228)
                      ..+..++|+.++   +++.   +....+|+..++++|.+....+..-...+.+++++  +++|.++.+| .+..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lN--l~~neisdvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLN--LANNEISDVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhh--cchhhhhhchHHHhhhHHhhh
Confidence            356677777886   4444   44555677778888887654444444556788888  8888888888 8888888888


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE  142 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~  142 (228)
                      ++++.|.+. ..|..+                 ..+.++..|+..+|.+-
T Consensus       105 lNl~~N~l~-~~p~vi-----------------~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVI-----------------APLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHH-----------------HHHHhHHHhcCCCCccc
Confidence            888888776 444433                 33445555666566554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=9.2e-08  Score=67.65  Aligned_cols=86  Identities=28%  Similarity=0.361  Sum_probs=47.9

Q ss_pred             CCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723           88 TKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus        88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                      ..|..+++++|.+. .+|+.+.                .+.+.++.+++++|.++ .+|..+..|+.|+.++++.|.+. 
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft----------------~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFT----------------IKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-  113 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHh----------------hccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-
Confidence            34455566666665 4444331                23344556666666666 45555666666666666666665 


Q ss_pred             CCCcchhhhcCCCCCEEEccCCccccc
Q 041723          168 TGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                        ..|..+-.+.++.+|+...|.....
T Consensus       114 --~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  114 --AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             --cchHHHHHHHhHHHhcCCCCccccC
Confidence              4455555556666666666655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=3.5e-07  Score=72.68  Aligned_cols=188  Identities=18%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             ccccccccCCCChHH------HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC--CCCc-cccCCCCC
Q 041723           20 SNAMKTLLQSPSLAN------LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE--NFLP-SLGNLTKL   90 (228)
Q Consensus        20 ~~l~~l~l~~~~l~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~--~~~p-~~~~l~~L   90 (228)
                      ++.+.+++..|.+.+      .+.++++|++|+++.|++...+-.....+.+|+++.  +.+..+  .... .+..+|.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV--LNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV--LNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE--EcCCCCChhhhhhhhhcchhh
Confidence            355566666665432      344566666666666655443222213444555555  555555  2222 44455555


Q ss_pred             cEEEeeCCcCCCC--CCChhhcccc-cccc--c-------cccchhhhcCCCCCEEeccCCcccccC-ccccccCCCCCE
Q 041723           91 NDLYLFGNDFSGK--VPDSLGDLLQ-LNYL--T-------GEILVEIRKLTQLHILRLAENQLEGSV-PSSIFELRNLRA  157 (228)
Q Consensus        91 ~~L~l~~n~l~~~--~p~~~~~l~~-~~~l--~-------~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~  157 (228)
                      +.|.++.|.+...  -......... ...+  .       ..+..--...+++..+-+..|.+.... -..+...+.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            5665555533210  0001100000 0000  0       000011123467777777777775332 234566777788


Q ss_pred             EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc-----ccCCCCCccccc
Q 041723          158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT-----VNTNLPNFTIIG  210 (228)
Q Consensus       158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~l~~L~~l~  210 (228)
                      |+++.+++.+|.. .+.+.+++.|+.+.+..+++.+.....     +++++++++.|+
T Consensus       229 LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  229 LNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            9999999987633 355788999999999999987643321     367788888876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.20  E-value=6.7e-07  Score=82.39  Aligned_cols=95  Identities=31%  Similarity=0.313  Sum_probs=75.8

Q ss_pred             cccccccCCCC-----hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEE
Q 041723           21 NAMKTLLQSPS-----LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDL   93 (228)
Q Consensus        21 ~l~~l~l~~~~-----l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L   93 (228)
                      .++.|-+.++.     ++ +.|..++.|++||+++|.-.+.+|..++.+-+|++|+  ++++.+..+| .++.+..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~--L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD--LSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc--ccCCCccccchHHHHHHhhhee
Confidence            57777777763     23 3477899999999999877788999999999999999  9999999999 99999999999


Q ss_pred             EeeCCcCCCCCCChhhcccccccc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      ++..+.-...+|.....|.+++.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             ccccccccccccchhhhcccccEE
Confidence            999887654455544445554433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=4.7e-06  Score=47.52  Aligned_cols=35  Identities=40%  Similarity=0.633  Sum_probs=14.6

Q ss_pred             CCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723          131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus       131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      |+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444444

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=1.4e-06  Score=68.61  Aligned_cols=94  Identities=20%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             hcCCCCCEEeccCCcccccCc-----cccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          126 RKLTQLHILRLAENQLEGSVP-----SSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                      ..-..|+.+.+..|.|.....     ..+..+.+|+.||+++|.++..  ..+...+..++.|+.|.+.+|.++......
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence            334567777777777763311     1234567788888888877631  112233444566777777777776543332


Q ss_pred             cc-----CCCCCcccccccccccccC
Q 041723          199 VN-----TNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       199 ~~-----~~l~~L~~l~l~~n~~~~~  219 (228)
                      ++     ...|+|..|...+|.+...
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcCc
Confidence            11     1256677777777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=6.8e-06  Score=46.84  Aligned_cols=39  Identities=46%  Similarity=0.606  Sum_probs=33.5

Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                      ++|++|++++|.++   .+|+.+.++++|++|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc---ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47999999999999   6888899999999999999999864

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=7e-07  Score=71.03  Aligned_cols=61  Identities=23%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             cCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCC-CCCccc-cCCCCCcEEEeeCCcCC
Q 041723           39 LANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKE-NFLPSL-GNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        39 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~-~~~p~~-~~l~~L~~L~l~~n~l~  101 (228)
                      +++++++|+.+|.++..  +..-...+|+|++|+  ++.|++ +.+-.. ....+|+++-+.+..+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LN--ls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLN--LSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEee--ccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            55666666666655431  223334556666666  666665 222211 23445556655555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.1e-06  Score=70.07  Aligned_cols=147  Identities=20%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             hhcccccccccccCCCC----hHHHHhccCCCCeeecCCcc-CCCC-cchhccCCcchHHHHHhhhhcCC--CCCc-ccc
Q 041723           15 AYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVN-TAST-VPYASANLSSLFSLLSLIAYCKE--NFLP-SLG   85 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~~~l~~~~~--~~~p-~~~   85 (228)
                      -+..+.+|..+++.++.    +...+.+-.+|+.|+++.++ ++.. ..--+..+..|+.|+  +++|.+  ..+. .+.
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN--lsWc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN--LSWCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC--chHhhccchhhhHHHh
Confidence            34555666777777766    33455666677777776653 3221 122334555666666  666655  1122 222


Q ss_pred             C-CCCCcEEEeeCCcCCCCCCChhhcc----cccccc--------ccccchhhhcCCCCCEEeccCCcccccCcc---cc
Q 041723           86 N-LTKLNDLYLFGNDFSGKVPDSLGDL----LQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPS---SI  149 (228)
Q Consensus        86 ~-l~~L~~L~l~~n~l~~~~p~~~~~l----~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~---~~  149 (228)
                      + -++|..|+++++.-. .....+..|    ++.-.+        .......+.+++-|+++.++.|...  .|.   .+
T Consensus       283 hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l  359 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL  359 (419)
T ss_pred             hhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee
Confidence            2 133444555444311 001111111    111111        1112234667889999999988753  343   46


Q ss_pred             ccCCCCCEEEccCCccc
Q 041723          150 FELRNLRALDLSDNNLS  166 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~~~  166 (228)
                      ..+++|.+|++.++.-.
T Consensus       360 ~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             ccCcceEEEEeccccCc
Confidence            78999999999887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.96  E-value=1.2e-05  Score=60.54  Aligned_cols=127  Identities=21%  Similarity=0.242  Sum_probs=78.6

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEI  121 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~  121 (228)
                      =+++++.+.++... -.--..+.+...++  +++|.+..++.+..++.|.+|.+.+|+++ .+...+.            
T Consensus        21 e~e~~LR~lkip~i-enlg~~~d~~d~iD--LtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~------------   84 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI-ENLGATLDQFDAID--LTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLD------------   84 (233)
T ss_pred             ccccccccccccch-hhccccccccceec--ccccchhhcccCCCccccceEEecCCcce-eeccchh------------
Confidence            45566665543211 11111234566778  88888877777778888888888888887 3433332            


Q ss_pred             chhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEEccCC
Q 041723          122 LVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALVLSSN  189 (228)
Q Consensus       122 ~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~L~~n  189 (228)
                          .-+++|+.|.+.+|++. .+-  ..+..+++|++|.+-+|.++..... --.+..+++|+.||++.=
T Consensus        85 ----~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   85 ----TFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ----hhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence                23467888888888876 322  2356777888888888887741111 113456677777777554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=2.2e-05  Score=66.09  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             cccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc
Q 041723           19 ASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC   76 (228)
Q Consensus        19 l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~   76 (228)
                      +.++..|++++|.+.....-..+|++|++++|.-....|..+  .++|++|.  +++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~--Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLT--VCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheE--ccCc
Confidence            345555555555421111111235555555443222233222  13455555  5555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.5e-05  Score=60.14  Aligned_cols=126  Identities=19%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             cccccccCCCChHHH--Hhc-cCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-ccc-CCCCCcEEEe
Q 041723           21 NAMKTLLQSPSLANL--AEK-LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLG-NLTKLNDLYL   95 (228)
Q Consensus        21 ~l~~l~l~~~~l~~~--~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~-~l~~L~~L~l   95 (228)
                      .-+++++.+..+|..  ++. ..+...+|+++|.+..  .+.+..++.|.+|.  ++.|.+..+. .+. .+++|+.|.+
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLl--l~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLL--LNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhh--cccCCCccccceEE--ecCCcceeeccchhhhccccceEEe
Confidence            456677777765532  222 4477888888887754  34466777888888  8888885554 443 3677888888


Q ss_pred             eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc---cccccCCCCCEEEccCCccc
Q 041723           96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP---SSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~  166 (228)
                      .+|.+. .+-+-               .-+..+++|+.|.+-+|++...--   ..+..+++|+.||++.-.-.
T Consensus        96 tnNsi~-~l~dl---------------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   96 TNNSIQ-ELGDL---------------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cCcchh-hhhhc---------------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            888876 22110               114567788888888888763211   23567888888888765543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.78  E-value=1.2e-05  Score=63.39  Aligned_cols=180  Identities=17%  Similarity=0.077  Sum_probs=109.7

Q ss_pred             HHHhccCCCCeeecCCccCCCCcc----hhccCCcchHHHHHhhhhcCCCCCc---------------cccCCCCCcEEE
Q 041723           34 NLAEKLANLKVLHLGQVNTASTVP----YASANLSSLFSLLSLIAYCKENFLP---------------SLGNLTKLNDLY   94 (228)
Q Consensus        34 ~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~~~l~~~~~~~~p---------------~~~~l~~L~~L~   94 (228)
                      .++-+|++|+.+++++|.+....|    +.++.-..|.+|.  +++|.++.+-               ..++-+.|+++.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~--l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK--LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE--eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            345567777777777776655444    3344445677777  7777664332               123446677777


Q ss_pred             eeCCcCCCCCCChhh--cccccccc-------ccccch--------hhhcCCCCCEEeccCCcccccC----ccccccCC
Q 041723           95 LFGNDFSGKVPDSLG--DLLQLNYL-------TGEILV--------EIRKLTQLHILRLAENQLEGSV----PSSIFELR  153 (228)
Q Consensus        95 l~~n~l~~~~p~~~~--~l~~~~~l-------~~~~~~--------~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~  153 (228)
                      ...|++. ..+....  .+.+...+       .+.-|.        .++.+.+|+.||+..|.++-..    ...+..++
T Consensus       164 cgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         164 CGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             eccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            7777776 4443221  11111111       122222        3456789999999999987332    23456788


Q ss_pred             CCCEEEccCCccccCCCcchh-hh-----cCCCCCEEEccCCccccccCcc------ccCCCCCccccccccccccc
Q 041723          154 NLRALDLSDNNLSGTGDLNMV-LL-----NLESLTALVLSSNKLSLLAGTT------VNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~p~~-~~-----~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~l~l~~n~~~~  218 (228)
                      .|+.|.+.+|.++.  .-... +.     ..++|..|....|-..+.....      --..+|-|..+.+.+|++.-
T Consensus       243 ~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         243 LLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            89999999999885  32222 22     2478899988888765532221      02457888888888888863

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=2.2e-05  Score=70.76  Aligned_cols=88  Identities=22%  Similarity=0.305  Sum_probs=44.0

Q ss_pred             hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc--C----ccc
Q 041723          126 RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA--G----TTV  199 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~----~~~  199 (228)
                      .++++|..||+|+.+++. + ..++.+++|+.|.+.+-.+...+.+. .+.++.+|++||++........  .    .. 
T Consensus       170 ~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-  245 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-  245 (699)
T ss_pred             hccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHh-
Confidence            355566666666666652 2 34556666666665555444221222 2345566666666555443221  1    11 


Q ss_pred             cCCCCCcccccccccccc
Q 041723          200 NTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       200 ~~~l~~L~~l~l~~n~~~  217 (228)
                      ...+|+|+.||.|++.++
T Consensus       246 ~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccCccccEEecCCcchh
Confidence            234566666666555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=4.5e-05  Score=59.61  Aligned_cols=109  Identities=28%  Similarity=0.282  Sum_probs=59.3

Q ss_pred             hhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcC--CCCCCChhhccccccccccccchhhhcCCCCCEEe
Q 041723           58 YASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDF--SGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR  135 (228)
Q Consensus        58 ~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l--~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~  135 (228)
                      .-...+..|+.++  +.++.+.++..+-.+++|+.|.++.|..  .+.++.                 -...+++|++++
T Consensus        37 gl~d~~~~le~ls--~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-----------------l~e~~P~l~~l~   97 (260)
T KOG2739|consen   37 GLTDEFVELELLS--VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-----------------LAEKAPNLKVLN   97 (260)
T ss_pred             cccccccchhhhh--hhccceeecccCCCcchhhhhcccCCccccccccee-----------------hhhhCCceeEEe
Confidence            3344556667766  6666665555555667777777777733  221111                 112346777777


Q ss_pred             ccCCccccc-CccccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEE
Q 041723          136 LAENQLEGS-VPSSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALV  185 (228)
Q Consensus       136 ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~  185 (228)
                      +++|.++.. .-.....+.+|..|++.+|..+..... -..|.-+++|+.++
T Consensus        98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             ecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            777777621 012244566677777777766642111 12333445555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=0.00036  Score=63.13  Aligned_cols=130  Identities=19%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             ccccccccCCCC-h----HHHHh-ccCCCCeeecCCccCCC-CcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723           20 SNAMKTLLQSPS-L----ANLAE-KLANLKVLHLGQVNTAS-TVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND   92 (228)
Q Consensus        20 ~~l~~l~l~~~~-l----~~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~   92 (228)
                      .+|+.|++++.. +    |..++ .++.|+.|.+++-.+.. ..-.....+++|..||  ++++.++.+..+.++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLD--IS~TnI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLD--ISGTNISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceee--cCCCCccCcHHHhccccHHH
Confidence            467777777765 2    23333 36777777777654432 2334455667777777  77777766666667777777


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccccc--Ccc----ccccCCCCCEEEccCCccc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGS--VPS----SIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~----~~~~l~~L~~L~l~~n~~~  166 (228)
                      |.+.+=.++ .-..               ..++..+++|+.||+|.......  +..    .-..+|.|+.||.+++.+.
T Consensus       200 L~mrnLe~e-~~~~---------------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFE-SYQD---------------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCC-chhh---------------HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777655444 1110               12345677777777776543222  121    1234677778887777766


Q ss_pred             c
Q 041723          167 G  167 (228)
Q Consensus       167 ~  167 (228)
                      .
T Consensus       264 ~  264 (699)
T KOG3665|consen  264 E  264 (699)
T ss_pred             H
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.24  E-value=0.00056  Score=57.75  Aligned_cols=137  Identities=22%  Similarity=0.251  Sum_probs=86.2

Q ss_pred             HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc-cccCCCCCcEEEeeCC-cCCCCCCChhhccc
Q 041723           36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP-SLGNLTKLNDLYLFGN-DFSGKVPDSLGDLL  112 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~  112 (228)
                      +..+.+++.|++++|.+.. +|.   --++|++|.  +++|.- ..+| .+  .++|+.|++++| .+. .+|..+..|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~--Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~  118 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEIT--IENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLE  118 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEE--ccCCCCcccCCchh--hhhhhheEccCccccc-ccccccceEE
Confidence            4557999999999998765 342   123588888  888655 6777 44  267999999998 555 7887766654


Q ss_pred             cccccccccchhhhcC-CCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCc
Q 041723          113 QLNYLTGEILVEIRKL-TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK  190 (228)
Q Consensus       113 ~~~~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~  190 (228)
                      -.    ......++.+ ++|+.|.+.++......+..-.-+++|+.|++++|...   .+|..+.  .+|++|.++.+.
T Consensus       119 L~----~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i---~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        119 IK----GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI---ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eC----CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc---cCccccc--ccCcEEEecccc
Confidence            21    1111123444 36888887544321011100112368999999988865   3444333  578999987763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.00014  Score=57.69  Aligned_cols=86  Identities=24%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             hcccccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc---cccCCCCC
Q 041723           16 YGTASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGNLTKL   90 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~~l~~L   90 (228)
                      -..+.+..+|.+.++.+.+  ...+++.|++|.|+-|.++...  .+..+++|+.|+  +..|.|..+.   .+.++++|
T Consensus        15 ~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElY--LRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   15 CSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELY--LRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             hhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHH--HHhcccccHHHHHHHhcCchh
Confidence            3447788999999999765  4567999999999999998644  478899999999  9999997776   77899999


Q ss_pred             cEEEeeCCcCCCCCC
Q 041723           91 NDLYLFGNDFSGKVP  105 (228)
Q Consensus        91 ~~L~l~~n~l~~~~p  105 (228)
                      +.|-+..|.-.|.-+
T Consensus        91 r~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAG  105 (388)
T ss_pred             hhHhhccCCcccccc
Confidence            999999998776555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00068  Score=53.15  Aligned_cols=84  Identities=27%  Similarity=0.370  Sum_probs=47.3

Q ss_pred             hhcCCCCCEEeccCC--cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc---Cccc
Q 041723          125 IRKLTQLHILRLAEN--QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA---GTTV  199 (228)
Q Consensus       125 ~~~l~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~~  199 (228)
                      +..+++|+.|.++.|  ++.+.++.....+++|+++++++|.+.....+++ +..+.+|..|++..|..+..-   ... 
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~v-  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKV-  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHH-
Confidence            345667777777777  4444444444555777777777777664323333 445566667777666555421   112 


Q ss_pred             cCCCCCccccc
Q 041723          200 NTNLPNFTIIG  210 (228)
Q Consensus       200 ~~~l~~L~~l~  210 (228)
                      +.-+++|++++
T Consensus       139 f~ll~~L~~LD  149 (260)
T KOG2739|consen  139 FLLLPSLKYLD  149 (260)
T ss_pred             HHHhhhhcccc
Confidence            44456666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=2.2e-05  Score=62.11  Aligned_cols=102  Identities=26%  Similarity=0.369  Sum_probs=74.1

Q ss_pred             CCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723           87 LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        87 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      +.+.+.|++.+|.+.+ +.                  -..+|+.|+.|.+|-|.|+. + ..+..+.+|++|.|..|.+.
T Consensus        18 l~~vkKLNcwg~~L~D-Is------------------ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-IS------------------ICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHHhhhhcccCCCccH-HH------------------HHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc
Confidence            4556677777877762 11                  24578899999999999983 3 34788999999999999988


Q ss_pred             cCCCcchhhhcCCCCCEEEccCCccccccCcc----ccCCCCCccccc
Q 041723          167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTT----VNTNLPNFTIIG  210 (228)
Q Consensus       167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~l~  210 (228)
                      +..++ ..+.++++|+.|-|..|+..+..+..    ++..+|+|+.||
T Consensus        77 sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   77 SLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            64333 34788899999999999888765543    245577777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.33  E-value=0.0046  Score=43.48  Aligned_cols=14  Identities=21%  Similarity=0.449  Sum_probs=5.8

Q ss_pred             cccCCCCCEEEccC
Q 041723          149 IFELRNLRALDLSD  162 (228)
Q Consensus       149 ~~~l~~L~~L~l~~  162 (228)
                      |..++.++.+.+..
T Consensus        77 F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   77 FSNCTNLKNIDIPS   90 (129)
T ss_dssp             TTT-TTECEEEETT
T ss_pred             ccccccccccccCc
Confidence            33444444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.25  E-value=0.0029  Score=44.53  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723           36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ  113 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  113 (228)
                      |..+.+|+.+.+.. .+......+|..+++++.+.  +..+ +..++  .+.++++++.+.+.. .+. .++..      
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~--~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~------   75 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSIN--FPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDN------   75 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEE--ESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TT------
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccc--cccc-ccccceeeeecccccccccccc-ccc-ccccc------
Confidence            44455555555553 33333344555555555555  5443 44444  566666677777744 222 12211      


Q ss_pred             ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccC
Q 041723          114 LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSD  162 (228)
Q Consensus       114 ~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  162 (228)
                                .+..+++++.+.+..+ +.......+..+ .++.+.+..
T Consensus        76 ----------~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 ----------AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ----------TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ----------cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence                      2445667777777554 332233445565 677776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.77  E-value=0.0043  Score=29.45  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=16.4

Q ss_pred             CCCeeecCCccCCCCcchhccC
Q 041723           41 NLKVLHLGQVNTASTVPYASAN   62 (228)
Q Consensus        41 ~L~~L~l~~n~~~~~~~~~~~~   62 (228)
                      +|++||+++|.++ .+|..|+.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            5789999999888 57766654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.41  E-value=0.0003  Score=60.98  Aligned_cols=186  Identities=23%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             ccccccCCCC--------hHHHHhccCCCCeeecCCccCCCCcc----hhccCC-cchHHHHHhhhhcCC---C--CCc-
Q 041723           22 AMKTLLQSPS--------LANLAEKLANLKVLHLGQVNTASTVP----YASANL-SSLFSLLSLIAYCKE---N--FLP-   82 (228)
Q Consensus        22 l~~l~l~~~~--------l~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~~~l~~~~~---~--~~p-   82 (228)
                      +..+++..|.        +-..+.....|+.|++++|.+....-    ..+... ..+++|.  +..|.+   +  .+. 
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~--l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLE--LVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHH--hhcccccccchHHHHH
Confidence            5666666665        23456677788888888887764322    222222 4567777  777777   1  222 


Q ss_pred             cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCC-CCE
Q 041723           83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRN-LRA  157 (228)
Q Consensus        83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~-L~~  157 (228)
                      .+.....++.++++.|.+.   +.+..-+      ...++..+....++++|.+++|.++...    ...+...++ +..
T Consensus       167 ~L~~~~~l~~l~l~~n~l~---~~g~~~l------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e  237 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLI---ELGLLVL------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE  237 (478)
T ss_pred             HHhcccchhHHHHHhcccc---hhhhHHH------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence            4445666777777777664   1111000      0011112234567888888888776221    122334444 666


Q ss_pred             EEccCCccccC--CCcchhhhcC-CCCCEEEccCCccccccCcc---ccCCCCCccccccccccccc
Q 041723          158 LDLSDNNLSGT--GDLNMVLLNL-ESLTALVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       158 L~l~~n~~~~~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +++..|.+.+.  ..+.+.+..+ ..+++++++.|.+++.....   ....++.++++.++.|.+.+
T Consensus       238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            88888877641  1233334444 56788888888887653332   14567788888888888765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.29  E-value=0.0081  Score=28.50  Aligned_cols=11  Identities=36%  Similarity=0.489  Sum_probs=4.2

Q ss_pred             CEEeccCCccc
Q 041723          132 HILRLAENQLE  142 (228)
Q Consensus       132 ~~L~ls~n~l~  142 (228)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.57  E-value=0.047  Score=24.05  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=9.9

Q ss_pred             CCCcEEEeeCCcCCCCCC
Q 041723           88 TKLNDLYLFGNDFSGKVP  105 (228)
Q Consensus        88 ~~L~~L~l~~n~l~~~~p  105 (228)
                      ++|+.|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             TT-SEEEETSS--S-SE-
T ss_pred             CccCEEECCCCCCC-CCc
Confidence            46888999999876 443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.04  E-value=0.0036  Score=54.36  Aligned_cols=177  Identities=24%  Similarity=0.171  Sum_probs=104.1

Q ss_pred             CCcCCcccccc----hhhhcccccccccccCCCChH--------HHHhcc-CCCCeeecCCccCCCC----cchhccCCc
Q 041723            2 WHHGTRKKKIA----TAAYGTASNAMKTLLQSPSLA--------NLAEKL-ANLKVLHLGQVNTAST----VPYASANLS   64 (228)
Q Consensus         2 ~~~~~~~~~~~----~~~~~~l~~l~~l~l~~~~l~--------~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~   64 (228)
                      |+.+|++..-.    ...+.....+..+++++|.+-        +.+... ..+++|++..|.+++.    +...+....
T Consensus        93 ~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~  172 (478)
T KOG4308|consen   93 SLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNE  172 (478)
T ss_pred             hhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhccc
Confidence            44555544432    245667788999999999842        223332 4567788888877754    445566678


Q ss_pred             chHHHHHhhhhcCCC-----CCc-ccc----CCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCC-CCE
Q 041723           65 SLFSLLSLIAYCKEN-----FLP-SLG----NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQ-LHI  133 (228)
Q Consensus        65 ~L~~L~~~l~~~~~~-----~~p-~~~----~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~-L~~  133 (228)
                      +++.++  +..|.+.     .++ .+.    ...++++|.+.+|.++   +.....      +    ...+...+. +..
T Consensus       173 ~l~~l~--l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t---~~~c~~------l----~~~l~~~~~~~~e  237 (478)
T KOG4308|consen  173 HLTELD--LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT---SSSCAL------L----DEVLASGESLLRE  237 (478)
T ss_pred             chhHHH--HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC---hHHHHH------H----HHHHhccchhhHH
Confidence            899999  9999871     112 333    4677889999998876   111110      0    011222333 444


Q ss_pred             EeccCCcccccC----ccccccC-CCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCcccc
Q 041723          134 LRLAENQLEGSV----PSSIFEL-RNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       134 L~ls~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~  193 (228)
                      +++..|.+.+..    .+.+..+ .+++.++++.|.+++.  ..+...+..+..++.+.++.|.+..
T Consensus       238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            666777665331    1223444 5667777777777641  1233344455677777777777754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.68  E-value=0.043  Score=47.40  Aligned_cols=14  Identities=14%  Similarity=0.057  Sum_probs=5.8

Q ss_pred             CCCCcccccccccc
Q 041723          202 NLPNFTIIGSVHET  215 (228)
Q Consensus       202 ~l~~L~~l~l~~n~  215 (228)
                      .+++++.+.+.+..
T Consensus       360 ~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  360 SCPKLTDLSLSYCG  373 (482)
T ss_pred             cCCCcchhhhhhhh
Confidence            34444444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.39  E-value=0.19  Score=24.55  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=15.6

Q ss_pred             cCCCCeeecCCccCCCCcchhc
Q 041723           39 LANLKVLHLGQVNTASTVPYAS   60 (228)
Q Consensus        39 l~~L~~L~l~~n~~~~~~~~~~   60 (228)
                      +++|+.|++++|++....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578888888888876554444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.39  E-value=0.19  Score=24.55  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=15.6

Q ss_pred             cCCCCeeecCCccCCCCcchhc
Q 041723           39 LANLKVLHLGQVNTASTVPYAS   60 (228)
Q Consensus        39 l~~L~~L~l~~n~~~~~~~~~~   60 (228)
                      +++|+.|++++|++....+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578888888888876554444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.38  E-value=0.0047  Score=48.07  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR  156 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  156 (228)
                      +.+|  ++......+.||++.|++- .+-+.+..                 ++.+..++++.|.+. ..|..++....++
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~-----------------~t~~~rl~~sknq~~-~~~~d~~q~~e~~   91 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSI-----------------LTRLVRLDLSKNQIK-FLPKDAKQQRETV   91 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHH-hhccchHH-----------------HHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence            3566  6777788888888888765 33333332                 333444455555554 3454455555555


Q ss_pred             EEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723          157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS  192 (228)
Q Consensus       157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~  192 (228)
                      .+++..|..+   ..|..++..+.++.+++.++.+.
T Consensus        92 ~~~~~~n~~~---~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   92 NAASHKNNHS---QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHhhccchh---hCCccccccCCcchhhhccCcch
Confidence            5555555544   34555555555555555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.59  E-value=0.028  Score=27.09  Aligned_cols=18  Identities=11%  Similarity=0.307  Sum_probs=8.1

Q ss_pred             CCcccccccccccccCcc
Q 041723          204 PNFTIIGSVHETLASSHI  221 (228)
Q Consensus       204 ~~L~~l~l~~n~~~~~~~  221 (228)
                      ++|++|++++|++++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            445555555555554443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.14  E-value=0.19  Score=42.51  Aligned_cols=144  Identities=23%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             cCCcchHHHHHhhhhcCC-CCCc--cc-cCCCCCcEEEeeCCc-CCCCCCChhhcc----ccccc---------cccccc
Q 041723           61 ANLSSLFSLLSLIAYCKE-NFLP--SL-GNLTKLNDLYLFGND-FSGKVPDSLGDL----LQLNY---------LTGEIL  122 (228)
Q Consensus        61 ~~l~~L~~L~~~l~~~~~-~~~p--~~-~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~~~~---------l~~~~~  122 (228)
                      .++..|+.|+  .+.|.. ...+  .+ .+.++|+++.+..|+ ++.   ..+..+    +.+..         +++++.
T Consensus       291 ~~c~~lq~l~--~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  291 CGCHALQVLC--YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hhhhHhhhhc--ccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhcCChhhhhhcccccceehhhhHh
Confidence            3456677777  777665 3333  22 357888888888776 221   111111    11111         112222


Q ss_pred             hhhhcCCCCCEEeccCCccc-cc----CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc-cccC
Q 041723          123 VEIRKLTQLHILRLAENQLE-GS----VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS-LLAG  196 (228)
Q Consensus       123 ~~~~~l~~L~~L~ls~n~l~-~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~  196 (228)
                      .-...++.|+.+.++.+... +.    +...-..+..|+.+.++++..... ..-..+..+.+|+.+++-+++-. ....
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-~~Le~l~~c~~Leri~l~~~q~vtk~~i  444 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-ATLEHLSICRNLERIELIDCQDVTKEAI  444 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-HHHHHHhhCcccceeeeechhhhhhhhh
Confidence            22335566677766666532 11    011123455667777777664421 22334556667777777665432 1111


Q ss_pred             ccccCCCCCccccc
Q 041723          197 TTVNTNLPNFTIIG  210 (228)
Q Consensus       197 ~~~~~~l~~L~~l~  210 (228)
                      ..+..++|++++..
T Consensus       445 ~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  445 SRFATHLPNIKVHA  458 (483)
T ss_pred             HHHHhhCccceehh
Confidence            11144566665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=88.85  E-value=0.35  Score=41.70  Aligned_cols=132  Identities=23%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CCcchHHHHHhhhhcCC-CC--C-ccccCCCCCcEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEec
Q 041723           62 NLSSLFSLLSLIAYCKE-NF--L-PSLGNLTKLNDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL  136 (228)
Q Consensus        62 ~l~~L~~L~~~l~~~~~-~~--~-p~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~l  136 (228)
                      ..+.|+.+.  +.++.. ..  + +....++.|+.|+++++ ......+...             ......+++|+++++
T Consensus       186 ~~~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~L~~l~l  250 (482)
T KOG1947|consen  186 SCPLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL-------------LLLLSICRKLKSLDL  250 (482)
T ss_pred             hCchhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-------------hhhhhhcCCcCccch
Confidence            367788887  777754 32  2 35566788888888774 2111111110             011234567777777


Q ss_pred             cCCc-ccccCccccc-cCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccc--cCccccCCCCCccccc
Q 041723          137 AENQ-LEGSVPSSIF-ELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLL--AGTTVNTNLPNFTIIG  210 (228)
Q Consensus       137 s~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~l~  210 (228)
                      +++. +++..-..+. .++.|+.|.+.++. +++. .+-....+++.|+.++++++.....  .... ..++++++.+.
T Consensus       251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~  327 (482)
T KOG1947|consen  251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELK  327 (482)
T ss_pred             hhhhccCchhHHHHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhh
Confidence            7777 4433222222 36778888766666 4431 2333445667788888876655321  1222 33455555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.69  E-value=0.37  Score=40.82  Aligned_cols=152  Identities=18%  Similarity=0.143  Sum_probs=84.5

Q ss_pred             cccccccCCCC-hH-----HHHhccCCCCeeecCCcc-CCCCcchhc-cCCcchHHHHHhhhhcCC---CCCc-cccCCC
Q 041723           21 NAMKTLLQSPS-LA-----NLAEKLANLKVLHLGQVN-TASTVPYAS-ANLSSLFSLLSLIAYCKE---NFLP-SLGNLT   88 (228)
Q Consensus        21 ~l~~l~l~~~~-l~-----~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~~~l~~~~~---~~~p-~~~~l~   88 (228)
                      .++.+..+++. ++     ..-.+..+|+++-+..|+ ++..-...+ .+.++|+.++  +..|..   +++- .-.+++
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~--~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD--LEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc--ccccceehhhhHhhhccCCc
Confidence            44555555443 22     223345667777776664 222111111 3446777777  777766   2233 334577


Q ss_pred             CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc-ccCccccccCCCCCEEEccCCcccc
Q 041723           89 KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE-GSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus        89 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                      .||.+.++.|..-  ..+++..+.          ..-..+..+..+.++++... +..-..+..++.|+.+++.++.-..
T Consensus       373 ~lr~lslshce~i--tD~gi~~l~----------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  373 RLRVLSLSHCELI--TDEGIRHLS----------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             hhccCChhhhhhh--hhhhhhhhh----------hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            7777777766532  222222111          12235677888888888864 2233456788899999998886432


Q ss_pred             CCCcchhhhcCCCCCEEEc
Q 041723          168 TGDLNMVLLNLESLTALVL  186 (228)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L  186 (228)
                      -..+......++++++..+
T Consensus       441 k~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  441 KEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhHHHHhhCccceehhh
Confidence            2234455567777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.43  E-value=0.34  Score=37.06  Aligned_cols=12  Identities=33%  Similarity=0.426  Sum_probs=5.8

Q ss_pred             cchHHHHHhhhhcC
Q 041723           64 SSLFSLLSLIAYCK   77 (228)
Q Consensus        64 ~~L~~L~~~l~~~~   77 (228)
                      ++|+.|+  +++|.
T Consensus       151 ~~L~~L~--lsgC~  162 (221)
T KOG3864|consen  151 PSLQDLD--LSGCP  162 (221)
T ss_pred             cchheee--ccCCC
Confidence            4455555  55443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.47  E-value=0.1  Score=26.29  Aligned_cols=21  Identities=10%  Similarity=0.139  Sum_probs=12.0

Q ss_pred             CCcccccccccccccCccccc
Q 041723          204 PNFTIIGSVHETLASSHIFCT  224 (228)
Q Consensus       204 ~~L~~l~l~~n~~~~~~~~~~  224 (228)
                      ++|++|+|++|.+++......
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            346666666666665554433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.38  E-value=0.073  Score=41.63  Aligned_cols=83  Identities=13%  Similarity=0.011  Sum_probs=49.7

Q ss_pred             hcccccccccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCc
Q 041723           16 YGTASNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLN   91 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~   91 (228)
                      +.....-+.++++.|.+   -..|+.++.+..+|++-|.+. ..|..+...+.++.++  +..|..+..| +++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~--~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAA--SHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHH--hhccchhhCCccccccCCcc
Confidence            34444555566666652   234555566666666665553 3555666666666666  6666666666 666666666


Q ss_pred             EEEeeCCcCC
Q 041723           92 DLYLFGNDFS  101 (228)
Q Consensus        92 ~L~l~~n~l~  101 (228)
                      .++.-++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            6666666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.29  E-value=0.086  Score=40.19  Aligned_cols=79  Identities=16%  Similarity=0.096  Sum_probs=34.9

Q ss_pred             CCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh-cCCCCCEEEccCC-ccccccCccccCCCCCccc
Q 041723          131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL-NLESLTALVLSSN-KLSLLAGTTVNTNLPNFTI  208 (228)
Q Consensus       131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~  208 (228)
                      ++.++-++..|..+.-+.+..++.++.+.+.+|.-.+..-+ ..+. -.++|+.|++++| +|++..... +..+++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHH-HHHhhhhHH
Confidence            45555555555444444455555555555555542220000 0111 2345566666544 344333333 444455555


Q ss_pred             ccc
Q 041723          209 IGS  211 (228)
Q Consensus       209 l~l  211 (228)
                      |.+
T Consensus       181 L~l  183 (221)
T KOG3864|consen  181 LHL  183 (221)
T ss_pred             HHh
Confidence            443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHIL 134
           P+L N ++L  L+L  N  SG +P SLG L       L LN L GEI  E+  +  L  L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L  N L G +PS +    NL  + LS+N L  TG++   +  LE+L  L LS+N  S
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFS 524

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHIL 134
           P+L N ++L  L+L  N  SG +P SLG L       L LN L GEI  E+  +  L  L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L  N L G +PS +    NL  + LS+N L  TG++   +  LE+L  L LS+N  S
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFS 527

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
           SL NL  LN LY+ G                +N L G I   I KLTQLH L +    + 
Sbjct: 71  SLANLPYLNFLYIGG----------------INNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           G++P  + +++ L  LD S N LSGT  L   + +L +L  +    N++S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNRIS 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 99.5 bits (249), Expect = 3e-25
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 26/170 (15%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFL-----PSLGNLTKLN 91
           KL  L  L++   N +  +P   + + +L +L  S       N L     PS+ +L  L 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS------YNALSGTLPPSISSLPNLV 152

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL--------NYLTGEILVEIRKLTQLHILRLAENQLEG 143
            +   GN  SG +PDS G   +L        N LTG+I      L  L  + L+ N LEG
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

Query: 144 SVPSSIFELRNLRALDLSDNNLSGT-GDLNMVLLNLESLTALVLSSNKLS 192
                    +N + + L+ N+L+   G +       ++L  L L +N++ 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVG----LSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 4e-23
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 82  PSLGNLTKLNDLYLFG-NDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHI 133
            SL NL  LN LY+ G N+  G +P ++  L QL         ++G I   + ++  L  
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 134 LRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL-TALVLSSNKLS 192
           L  + N L G++P SI  L NL  +    N +SG   +     +   L T++ +S N+L+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 6e-22
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 22/168 (13%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFL-----PSLGNLTKL- 90
           ++  L  L       + T+P + ++L +L  +          N +      S G+ +KL 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD------GNRISGAIPDSYGSFSKLF 176

Query: 91  NDLYLFGNDFSGKVPDSLGDL------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGS 144
             + +  N  +GK+P +  +L      L  N L G+  V          + LA+N L   
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

Query: 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           +   +   +NL  LDL +N + GT  L   L  L+ L +L +S N L 
Sbjct: 237 LGK-VGLSKNLNGLDLRNNRIYGT--LPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 62  NLSSLFSLLSLIAYCKENFL----PSLGNLTKLNDLYLFGNDFSG--KVPDSLGDLLQL- 114
           N ++L S L     C   +L     +     ++N+L L G +      +P SL +L  L 
Sbjct: 20  NPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79

Query: 115 -------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167
                  N L G I   I KLTQLH L +    + G++P  + +++ L  LD S N LSG
Sbjct: 80  FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 168 TGDLNMVLLNLESLTALVLSSNKLS 192
           T  L   + +L +L  +    N++S
Sbjct: 140 T--LPPSISSLPNLVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.7 bits (213), Expect = 4e-20
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 29/175 (16%)

Query: 30  PSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-----PSL 84
           PS+++L     NL  +       +  +P +  + S LF+ +++      N L     P+ 
Sbjct: 143 PSISSLP----NLVGITFDGNRISGAIPDSYGSFSKLFTSMTI----SRNRLTGKIPPTF 194

Query: 85  GNLTKLNDLYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHILRLA 137
            NL  L  + L  N   G      G         L  N L  ++  ++     L+ L L 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252

Query: 138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV--LLNLESLTALVLSSNK 190
            N++ G++P  + +L+ L +L++S NNL G      +    NL+       ++NK
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-----IPQGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 4e-23
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 23/176 (13%)

Query: 33  ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL------PSLGN 86
             L+     L  L L   +    VP    + S L SL         N         +L  
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL-----ALSSNNFSGELPMDTLLK 341

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDL--------LQLNYLTGEILVEI--RKLTQLHILRL 136
           +  L  L L  N+FSG++P+SL +L        L  N  +G IL  +       L  L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             N   G +P ++     L +L LS N LSGT  +   L +L  L  L L  N L 
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT--IPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 9e-23
 Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHIL 134
           P+L N ++L  L+L  N  SG +P SLG L       L LN L GEI  E+  +  L  L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L  N L G +PS +    NL  + LS+N L+G   +   +  LE+L  L LS+N  S
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 7e-22
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 20/169 (11%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-----PSLGN--LTKL 90
           K+  LKVL L     +  +P +  NLS+    L L      N       P+L       L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL----SSNNFSGPILPNLCQNPKNTL 396

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEG 143
            +LYL  N F+GK+P +L +  +L       NYL+G I   +  L++L  L+L  N LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            +P  +  ++ L  L L  N+L+G   +   L N  +L  + LS+N+L+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.9 bits (229), Expect = 1e-21
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFL-----PSLGNLTKLN 91
           +  NL+ L +   N ++ +P    + S+L  L +S       N L      ++   T+L 
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS------GNKLSGDFSRAISTCTELK 250

Query: 92  DLYLFGNDFSGKVPDS-LGDLLQL----NYLTGEILVEIR-KLTQLHILRLAENQLEGSV 145
            L +  N F G +P   L  L  L    N  TGEI   +      L  L L+ N   G+V
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 146 PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           P        L +L LS NN SG   ++  LL +  L  L LS N+ S
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 35/186 (18%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-----PSLGNLTKLND 92
             + L  LHL     + T+P +  +LS L   L L      N L       L  +  L  
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKL-RDLKL----WLNMLEGEIPQELMYVKTLET 470

Query: 93  LYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSV 145
           L L  ND +G++P  L +   L       N LTGEI   I +L  L IL+L+ N   G++
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 146 PSSIFELRNLRALDLSDNNLSG------------------TGDLNMVLLNLESLTALVLS 187
           P+ + + R+L  LDL+ N  +G                   G   + + N         +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 188 SNKLSL 193
            N L  
Sbjct: 591 GNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 6e-20
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 23/156 (14%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYLF 96
           KL +L+VL L   + +               L  L I+  K +    +     L  L + 
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208

Query: 97  GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR 156
            N+FS  +P                   +   + L  L ++ N+L G    +I     L+
Sbjct: 209 SNNFSTGIP------------------FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L++S N   G     +  L L+SL  L L+ NK +
Sbjct: 251 LLNISSNQFVGP----IPPLPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHIL 134
             L  L+  N   +    + G    +  +   +       N L+G I  EI  +  L IL
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L  N + GS+P  + +LR L  LDLS N L G   +   +  L  LT + LS+N LS
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR--IPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 4e-17
 Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 41  NLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKEN-FLPSLGNLTKLNDLYLFGN 98
            +  + L            S++L SL  L SL ++    N  +        L  L L  N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 99  DFSGKVPD--SLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSS 148
             SG V    SLG    L       N L     V    KL  L +L L+ N + G+    
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 149 IFE---LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
                    L+ L +S N +SG  D++       +L  L +SSN  S
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 41/189 (21%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-----PSLGNLTKLND 92
              NL  + L        +P     L +L ++L L      N         LG+   L  
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKL----SNNSFSGNIPAELGDCRSLIW 542

Query: 93  LYLFGNDFSGKVPDSLGDLLQL-----------------------------NYLTGEILV 123
           L L  N F+G +P ++                                       G    
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 124 EIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTA 183
           ++ +L+  +   +      G    +     ++  LD+S N LS  G +   + ++  L  
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS--GYIPKEIGSMPYLFI 660

Query: 184 LVLSSNKLS 192
           L L  N +S
Sbjct: 661 LNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 9/163 (5%)

Query: 14  AAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLG--QVNTASTVPYASANLSSLFSLLS 71
           AA    S  +     +       +     K  H     +            LS+      
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 72  LIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVE 124
                  +  P+  N   +  L +  N  SG +P  +G +  L       N ++G I  E
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 125 IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167
           +  L  L+IL L+ N+L+G +P ++  L  L  +DLS+NNLSG
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
             LN     +   +  LT L  L L+ + + GSV        +L +LDLS N+LSG    
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT 118

Query: 172 NMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
              L +   L  L +SSN L      +    L +  ++
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 19/124 (15%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFL-----PSLGNLTKLN 91
           +L+     ++              N  S+  L +S       N L       +G++  L 
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS------YNMLSGYIPKEIGSMPYLF 659

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS 144
            L L  ND SG +PD +GDL  L       N L G I   +  LT L  + L+ N L G 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 145 VPSS 148
           +P  
Sbjct: 720 IPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAEN 139
            ++  LTKL   Y+  + F  +      +    +         ++   L  L  + +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV------LLNLESLTALVLSSNKLS 192
                +P+ +  L  ++ ++++ N       L             E +  + +  N L 
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
              +++ ++ +    N+       +             +     K   +  + L+ NQ+ 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFD----------PLDPTPFKGINVSSINLSNNQIS 446

Query: 143 GSVPSSIFELRNLRALDLSDNNLSG-----TGDLNMVLLNLESLTALVLSSNKLSLLAGT 197
                       L +++L  N L+        D N    N   LT++ L  NKL+ L+  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 198 TVNTNLPNFTII 209
              T LP    I
Sbjct: 507 FRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL------LSLIAYCKENF--LPSLGNLTK 89
            L +L  + +      + +P     L  +  +             K+++  L       K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 90  LNDLYLFGNDF-SGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQL 141
           +  +Y+  N+  +  V  SL  + +L       N L G++        +L  L LA NQ+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQI 365

Query: 142 EGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
                +       +  L  + N L    +      ++  ++A+  S N++ 
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 9e-13
 Identities = 23/188 (12%), Positives = 57/188 (30%), Gaps = 33/188 (17%)

Query: 38  KLANLKVLHLG----QVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG--NLTKLN 91
           +L  L+VL LG    +VN     P   +   S      +  + ++ F+      + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 92  DLYLFGNDFSGKVPDSLGDLLQLNYLTG------EILVEIRKLTQLHILRLAENQLEG-- 143
              +  +     +  S    L+   +         +   + +LT+L    +  +      
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 144 -----------------SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVL 186
                            +       L++L  +++ +        L   L  L  +  + +
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINV 280

Query: 187 SSNKLSLL 194
           + N+    
Sbjct: 281 ACNRGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 16/124 (12%)

Query: 82  PSLGNLTKLNDLYLFGNDFSG----KVPDSLGDL-------LQLNYLTGEILVEI--RKL 128
            ++G LT+L  L L  +          P  +              +     +        
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSS 188
           + L    +  +  + S+  S         +    NN++    ++  ++ L  L    + +
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGN 215

Query: 189 NKLS 192
           +   
Sbjct: 216 SPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 34/183 (18%), Positives = 53/183 (28%), Gaps = 31/183 (16%)

Query: 37  EKLANLKVLHLGQ-------VNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGN 86
              + L  ++L          N+         N   L S+   + + K   L        
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID--LRFNKLTKLSDDFRATT 511

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQL-------------NYLTGEILVEIRKLTQLHI 133
           L  L  + L  N FS   P    +   L             N    E    I     L  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 134 LRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193
           L++  N +   V   I    N+  LD+ DN      DL+  +         +L  +K   
Sbjct: 571 LQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISI-DLSY-VCPYIEAGMYMLFYDKTQD 625

Query: 194 LAG 196
           + G
Sbjct: 626 IRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 11/121 (9%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-----------TGEILVEIRKLTQL 131
           SL +  ++  L L G   SG+VPD++G L +L  L                  I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
              +      + +             +    N+      +          T +   SN +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 192 S 192
           +
Sbjct: 196 T 196

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 123 VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV--LLNLES 180
           V +    ++  L L      G VP +I +L  L  L L  +       L     +    S
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 181 LTALVLSSNKLS 192
                       
Sbjct: 135 DEQKQKMRMHYQ 146

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 10/190 (5%)

Query: 26  LLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SL 84
           +       +  ++L    +L           P    +  SL          +  F+  ++
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 85  GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY--LTGEILVEIRKLTQLHILRLAENQLE 142
             LTKL  +Y   + F+        +    +Y        +    L  L  + L      
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNM-------VLLNLESLTALVLSSNKLSLLA 195
             +P  +++L  L++L+++ N       L                +    +  N L    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 196 GTTVNTNLPN 205
            +     +  
Sbjct: 565 ASASLQKMVK 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 26/172 (15%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG 97
           +L  L++++    +  +    A     +            EN   S  NL  L D+ L+ 
Sbjct: 446 RLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQY----ENEELSWSNLKDLTDVELYN 500

Query: 98  NDFSGKVPDSLGDLLQLNYL----------------TGEILVEIRKLTQLHILRLAENQL 141
                ++PD L DL +L  L                   +  +     ++ I  +  N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 142 EGSVPS-SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           E    S S+ ++  L  LD   N +               LT L L  N++ 
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFG----TNVKLTDLKLDYNQIE 608

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 6e-14
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 24/187 (12%)

Query: 26  LLQSPSLANLA-EKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPS 83
           + ++P +  +  +   +LK   +G + N  + +  A   L+ L  +     Y   +    
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII-----YFANSPFTY 462

Query: 84  LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRL 136
                   D              S  +L  L            ++   +  L +L  L +
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 137 AENQLEG---------SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS 187
           A N+             +         ++   +  NNL      +  L  +  L  L   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCV 581

Query: 188 SNKLSLL 194
            NK+  L
Sbjct: 582 HNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 22/177 (12%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGNLTKLNDL 93
                L  L L   N    +P      +     L   ++ K  ++P   +  ++  +  +
Sbjct: 592 GTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGF-SHNKLKYIPNIFNAKSVYVMGSV 649

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153
               N    +  +    +                      + L+ N+++           
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYK------------GINASTVTLSYNEIQKFPTELFATGS 697

Query: 154 NLRALDLSDNNLSG-----TGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
            +  + LS+N ++          +    N   LT + L  NKL+ L+     T LP 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 27/192 (14%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-------LSLIAYCKENFLPSLGNLTKL 90
           K  N   + L             A  S + ++        S+     +    +  N   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 91  NDLYLFGNDFSGKVPDSL--GDLLQLNYLT------GEILVEIRKLTQLHILRLAE---- 138
             + L  N  +  + D      L  L+ +            +    +QL    +      
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 139 --NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196
             N++    P+ I    +L  L +  N++     ++  L     L  L ++ N    +  
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRK---VDEKL--TPQLYILDIADNPNISIDV 844

Query: 197 TTVNTNLPNFTI 208
           T+V   +     
Sbjct: 845 TSVCPYIEAGMY 856

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 14/81 (17%), Positives = 33/81 (40%)

Query: 113 QLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172
           +L+    +  V++    ++  L LA    +G VP +I +L  L+ L    ++ + +G L 
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 173 MVLLNLESLTALVLSSNKLSL 193
                   ++       ++  
Sbjct: 367 GDEELTPDMSEERKHRIRMHY 387

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
            L N  ++  L L G    G+VPD++G                 +LT+L +L    +   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIG-----------------QLTELKVLSFGTHSET 360

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            S      E       +   + +       M L   + L    L  + ++  
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRM-HYKKMFLDYDQRLNLSDLLQDAINRN 411

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 11/134 (8%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 82  PSLGNLTKLNDLYLFGNDFSG--------KVPDSLGDLLQLNYLTGEILVEIRKLTQLHI 133
            ++G LT+L  L    +  +         ++   + +  +         + +    +L++
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 134 LRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGT----GDLNMVLLNLESLTALVLSSN 189
             L ++ +  +    +  ++    + L D  +         ++  +  L  L  +  +++
Sbjct: 401 SDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 190 KLSLLAGTTVNTNL 203
             +         + 
Sbjct: 459 PFTYDNIAVDWEDA 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCK-ENFLPSLGNLTKLNDLYL 95
               L  + L   N  +++       ++L  L ++ ++Y    +F     N ++L    +
Sbjct: 726 NTYLLTTIDLRF-NKLTSLS-DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783

Query: 96  ------FGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEG 143
                  GN    + P  +     L  L        ++  ++    QL+IL +A+N    
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNIS 841

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL 176
              +S+          L  +        + + +
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSL------LSLIAYCKENFLPSLGNLTKLND 92
           L  L+ L++   +           L +L  L       SL     E F+      + L+ 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHI 385

Query: 93  LYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILV-EIRKLTQLHILRLAENQLEGS 144
           L L  N  S    D+   L       L LN +  E+   E R L  +  + L+ N+    
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
             +S   + +L+ L L    L            L +LT L LS+N ++ +
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSL------LSLIAYCKENFLPSLGNLTKL 90
             L N+  ++L           + A + SL  L      L  +    ++       L  L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV----DSSPSPFQPLRNL 482

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQLNYL---------------TGEILVEIRKLTQLHILR 135
             L L  N+ +    D L  L +L  L                G  +  ++ L+ LHIL 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L  N  +        +L  L+ +DL  NNL+       V  N  SL +L L  N ++ + 
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL--PASVFNNQVSLKSLNLQKNLITSVE 600

Query: 196 GTTVNTNLPNFTII 209
                    N T +
Sbjct: 601 KKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 11/163 (6%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF 96
             N+ VL+L                S L SL   + +   + L       L  L  L L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD--VGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 97  GNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149
            N+ S     +      L       N +         K   L  L L+ N L  +   + 
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            +L NL+ L LS+N +       + +    SL  L LSSN++ 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 34/174 (19%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LS--LIAYCKENFLPSLGNLTKLNDLY 94
             ++LK L L         P     +  LF L L+   +       L      T + +L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 95  LFGNDFSGKVPDSLGDL---------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV 145
           L  +  S     +   L         L  N L          L QL    L  N ++   
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 146 PSSIFELRNLRALDLSDNNLSGTGDLN-------MVLLNLESLTALVLSSNKLS 192
             S+  L N+R L+L  +    +  L             L+ L  L +  N + 
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPS--LGNLTKLNDL 93
             + +L+ L L +      V  + +    L +L  L ++      +    L  L KL  L
Sbjct: 451 ALVPSLQRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 94  YLFGN--------DFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAE 138
            L  N           G     L  L  L       N      +   + L +L I+ L  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           N L     S      +L++L+L  N ++   +  +      +LT L +  N   
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSV-EKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 16/174 (9%)

Query: 25  TLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-- 82
           +   + +   L  K  NL +L L   N       + A L  L      + Y     L   
Sbjct: 235 STTSNTTFLGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF--LEYNNIQHLFSH 290

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
           SL  L  +  L L  +             + L  L        + L  L  L + +N + 
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQS--------ISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLE--SLTALVLSSNKLSLL 194
           G   +    L NL+ L LS++  S     N   ++L    L  L L+ NK+S +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHI 133
           +  L  L+ L+ L L  N F     +   DL +L       N L             L  
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 134 LRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGT 168
           L L +N +            RNL  LD+  N    T
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 8/174 (4%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
           E L NL +           +       + L ++ S  +       +           L L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 96  FGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAENQL--EGSVPSSIFE 151
               F       L  L  L      G        L  L  L L+ N L  +G    S F 
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
             +L+ LDLS N +     ++   L LE L  L    + L  ++  +V  +L N
Sbjct: 372 TTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 14/166 (8%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLP--SLGNLTKLNDLY 94
            L  L+ L     +    +   S    SL +L+ L I++             L+ L  L 
Sbjct: 394 GLEQLEHLDFQH-SNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 95  LFGNDFSGKV-PDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
           + GN F     PD   +L  L         L          L+ L +L ++ N       
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
                L +L+ LD S N++  +     +     SL  L L+ N  +
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 71  SLIAYCKENFLPSL--GNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEI 121
           ++   C E     +         +L L  N        S     +L         +    
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL 181
               + L+ L  L L  N ++     +   L +L+ L   + NL+     N  + +L++L
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTL 126

Query: 182 TALVLSSNKLSLLAGTTVNTNLPNFTII 209
             L ++ N +         +NL N   +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFL---- 81
           L S S  +       L+VL L +    +    A  +LS L +L L+       N +    
Sbjct: 43  LGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT------GNPIQSLA 92

Query: 82  -PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLH 132
             +   L+ L  L     + +      +G L  L  L        + ++      LT L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 133 ILRLAENQLEGSVPSSIFELRNLRA----LDLSDNNLSGTGDLNMVLLNLESLTALVLSS 188
            L L+ N+++    + +  L  +      LDLS N ++    +         L  L L +
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLHKLTLRN 209

Query: 189 NKLSLLAGTTVNTNLPNFTI 208
           N  SL    T    L    +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEV 229

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 9/178 (5%)

Query: 26  LLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSL---------LSLIAYC 76
                 +    + LA L+V  L      +       + S+L  L         L+ + Y 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 77  KENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL 136
            ++ +     LT ++   L           S     Q   L      +   L    + RL
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
                +G    S  +L +L  LDLS N LS  G  +       SL  L LS N +  +
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLTKLNDLYLF 96
            L NL  L +   +T          LSSL  L ++  ++ +         L  L  L L 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 97  GNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149
                   P +   L  L       N          + L  L +L  + N +  S    +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 150 FEL-RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
                +L  L+L+ N+ + T +    L  ++    L++   ++ 
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 18/177 (10%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGN 86
                + +L   L N+    L  V             S  F    L              
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHL--ELVNCKFGQFPT 321

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL---------TGEILVEIRKLTQLHILRLA 137
           L   +   L      G    S  DL  L +L          G         T L  L L+
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            N +   + S+   L  L  LD   +NL    + + V L+L +L  L +S     + 
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVA 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
           +    + L +L L     S ++P  L  L  L       N       +       L  L 
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 136 LAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           +  N     + +   E L NLR LDLS +++  +   N+ L NL  L +L LS N+   L
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
           +  +  +L+ L L  N        +L     L         ++    + +     L  L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           L  N +        F    L+ LD  +N +      +M  L   +  +L L+ N ++
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 37/179 (20%), Positives = 52/179 (29%), Gaps = 15/179 (8%)

Query: 39  LANLKVLHLG-QVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGN--LTKLNDLYL 95
           L     L L    N  + +   + + +   SL              L N  +  L     
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 96  FGNDFSGKVPDSLGDLLQL---------NYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
              D     P     L ++         +Y            + L  L L    L   +P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
           S +  L  L+ L LS N       +     N  SLT L +  N   L  GT    NL N
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 18/182 (9%)

Query: 26  LLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-- 83
           +  S         L++L+ L+L      S    A      L  L   +A+ +     +  
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD--LAFTRLKVKDAQS 419

Query: 84  -LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVE---IRKLTQLH 132
              NL  L  L L  +            L  L       N+     + +   ++ L +L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 133 ILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           IL L+   L      +   L+ +  +DLS N L+ +      L +L+ +  L L+SN +S
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS--SIEALSHLKGIY-LNLASNHIS 536

Query: 193 LL 194
           ++
Sbjct: 537 II 538

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 11/140 (7%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSL-LS--LIAYCKENFLPSLGNLTKLNDLYL 95
           L  LKVL+L       +       L +L  L L              SL  L +L  L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
              D S     +   L  +       N LT   +  +  L  ++ L LA N +   +PS 
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 149 IFELRNLRALDLSDNNLSGT 168
           +  L   R ++L  N L  T
Sbjct: 543 LPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 26/165 (15%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-----PSLGNLTKLNDL 93
              LK L   Q   +S       N  +L SL     Y   N +     P      KL  L
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESL-----YLGSNHISSIKLPKGFPTEKLKVL 158

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153
               N       + +  L Q   L+               L L  N +   +    F+  
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLS---------------LNLNGNDIA-GIEPGAFDSA 202

Query: 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198
             ++L+             +    ++SL            ++   
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 18/168 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLP--SLGNLTKLNDLYL 95
           L NL  L L +      +   +    S   L +L +      F+   +L     L  L+ 
Sbjct: 56  LINLTFLDLTR-CQIYWIHEDT--FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
                S      L +   L       N+++   L +     +L +L    N +       
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 149 IFELRNLR--ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           +  L+     +L+L+ N+++G   +     +     +L     +  L+
Sbjct: 173 MSSLQQATNLSLNLNGNDIAG---IEPGAFDSAVFQSLNFGGTQNLLV 217

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 23/176 (13%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL----PSLGNLTKLNDLY 94
              LKVL     N    +     ++SSL    +L      N +    P   +      L 
Sbjct: 152 TEKLKVLDFQN-NAIHYLS--KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 95  LFGNDFSGKVPDSLGDL------------LQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
             G      +   L +             +    ++  +   + ++  +  + L ++   
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFF 267

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198
               ++      L+ LDL+  +LS   +L   L+ L +L  LVLS+NK   L   +
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 21/164 (12%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L +L        N  + +      ++++  L SL I   K   L  L NL++L  L +
Sbjct: 196 ASLTSLHYFTAYV-NQITDIT----PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
             N  S    +++ DL +L       N ++   +  +  L+QL+ L L  NQL       
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           I  L NL  L LS N+++    L     +L  + +   ++  + 
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPLA----SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L  L  L++G  N  + +      L +L +L  L +     + +  L NLTK+  L L
Sbjct: 85  SNLVKLTNLYIGT-NKITDIS----ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
             N         L ++  LNYLT      + +  I  LT L+ L L  NQ+E    S + 
Sbjct: 140 GANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SPLA 196

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            L +L       N ++    +     N+  L +L + +NK++ L+     + L
Sbjct: 197 SLTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKITDLSPLANLSQL 245

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 34/175 (19%), Positives = 74/175 (42%), Gaps = 22/175 (12%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
           E+L ++  L +      +++      +  L +L  L +   +   +  L NL KL +LY+
Sbjct: 41  EELESITKLVVAG-EKVASIQ----GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI 95

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
             N  +     +L +L  L       + ++   +  +  LT+++ L L  N    S  S 
Sbjct: 96  GTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSP 150

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
           +  +  L  L ++++ +     +     NL  L +L L+ N++  ++     T+L
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIA----NLTDLYSLSLNYNQIEDISPLASLTSL 201

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 16/172 (9%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF 96
           + L NL+ L+L + +  S +    ANL+ +   L+L A    + L  L N+T LN L + 
Sbjct: 107 QNLTNLRELYLNE-DNISDIS-PLANLTKM-YSLNLGANHNLSDLSPLSNMTGLNYLTVT 163

Query: 97  GNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
            +         + +L  L  L+      E +  +  LT LH      NQ+     + +  
Sbjct: 164 ESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI--TPVAN 219

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
           +  L +L + +N ++    L     NL  LT L + +N++S +      T L
Sbjct: 220 MTRLNSLKIGNNKITDLSPLA----NLSQLTWLEIGTNQISDINAVKDLTKL 267

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 25/123 (20%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ 140
           +    +L +     L     +                    +V   +L  +  L +A  +
Sbjct: 15  IFPDADLAEGIRAVLQKASVTD-------------------VVTQEELESITKLVVAGEK 55

Query: 141 LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVN 200
           +       I  L NL  L+L+ N ++    L+    NL  LT L + +NK++ ++     
Sbjct: 56  VAS--IQGIEYLTNLEYLNLNGNQITDISPLS----NLVKLTNLYIGTNKITDISALQNL 109

Query: 201 TNL 203
           TNL
Sbjct: 110 TNL 112

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 53/172 (30%), Positives = 71/172 (41%), Gaps = 18/172 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF 96
           + L NL  L L   NT S +      LS L SL  L    +   L  L NLT L  L + 
Sbjct: 131 KNLTNLNRLELSS-NTISDIS----ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 97  GNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
            N  S      L  L  L  L         +  +  LT L  L L  NQL+     ++  
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
           L NL  LDL++N +S    L+     L  LT L L +N++S ++     T L
Sbjct: 242 LTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNISPLAGLTAL 289

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L NL  L L   N  S +      LS L  L  L +   + + +  L  LT L +L L
Sbjct: 240 ASLTNLTDLDLAN-NQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294

Query: 96  FGNDFSGKVPDSLGDLLQLNYLT-----GEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
             N         + +L  L YLT        +  +  LT+L  L    N++     SS+ 
Sbjct: 295 NENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            L N+  L    N +S    L     NL  +T L L+    +  
Sbjct: 351 NLTNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQAWTNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 31/168 (18%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             LA      LG+ N   TV       + L  + +L         +  +  L  L  +  
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF 75

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL 155
             N  +                    +  ++ LT+L  + +  NQ+     + +  L NL
Sbjct: 76  SNNQLTD-------------------ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 114

Query: 156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
             L L +N ++    L     NL +L  L LSSN +S ++  +  T+L
Sbjct: 115 TGLTLFNNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSL 158

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L  L  L LG  N  S +      L+ L +L +L +   +   +  + NL  L  L L
Sbjct: 262 SGLTKLTELKLGA-NQISNIS----PLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316

Query: 96  FGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
           + N+ S   P  +  L +L       N ++   +  +  LT ++ L    NQ+     + 
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTP 370

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           +  L  +  L L+D   +   +  +      S+   V +     + 
Sbjct: 371 LANLTRITQLGLNDQAWT---NAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 25/123 (20%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ 140
           + +   L +     L   + +                     V    L Q+  L+     
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTD-------------------TVSQTDLDQVTTLQADRLG 57

Query: 141 LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVN 200
           +       +  L NL  ++ S+N L+    L     NL  L  +++++N+++ +      
Sbjct: 58  I--KSIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANL 111

Query: 201 TNL 203
           TNL
Sbjct: 112 TNL 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLP--SLGNLTKLNDLYL 95
           L  L+ L     +T   V   SA   SL  LL L I+Y             LT LN L +
Sbjct: 398 LEELQHLDFQH-STLKRVTEFSA-FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 96  FGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPS 147
            GN F      +   +   L         L          L +L +L ++ N L     S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 148 SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
              +L +L  LD S N +  +    ++    +SL    L++N ++
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSK--GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 37/171 (21%), Positives = 56/171 (32%), Gaps = 22/171 (12%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL------PSLGNLTKLN 91
              +L+ L L   N A  +      L  L  L       + + L       +  +L KL 
Sbjct: 374 GTNSLRHLDLSF-NGAIIMSANFMGLEELQHL-----DFQHSTLKRVTEFSAFLSLEKLL 427

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEG 143
            L +   +           L  L       N      L  +    T L  L L++ QLE 
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
                   L  L+ L++S NNL      +     L SL+ L  S N++   
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 68  SLLSLIAYCKENFLPSL--GNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLT 118
            + ++   C +  L  +     +   ++ L  N        S  +  +L         + 
Sbjct: 10  VVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL 178
                    L  L  L L  N ++   P S   L +L  L   +  L+        +  L
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF--PIGQL 127

Query: 179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
            +L  L ++ N +         +NL N   +
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 38/169 (22%), Positives = 54/169 (31%), Gaps = 9/169 (5%)

Query: 41  NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDF 100
            +    L   N  S        L+++ S +SL A     +L  +    K   L +     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANV-SAMSL-AGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 101 SGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS--IFELRNLR 156
                  L  L  L L    G I  +   L  L  L L+ N L  S   S       +LR
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
            LDLS N            + LE L  L    + L  +   +   +L  
Sbjct: 380 HLDLSFNGAIIMSA---NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 36/181 (19%), Positives = 55/181 (30%), Gaps = 12/181 (6%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIA--------YCKE 78
             S  +    + LA L V  L                S +  L  +              
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 79  NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEI--RKLTQLHILRL 136
           + +     L  ++ + L G               Q   +    L +     L  L  L L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL 335

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196
             N+   S+      L +L  LDLS N LS +G  +   L   SL  L LS N   +++ 
Sbjct: 336 TMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393

Query: 197 T 197
            
Sbjct: 394 N 394

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 60  SANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119
           + +L  L SL   +   K +       L  L+ L L  N  S     S  DL        
Sbjct: 324 TLDLPFLKSLT--LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-------- 373

Query: 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLE 179
                      L  L L+ N     + ++   L  L+ LD   + L    + +   L+LE
Sbjct: 374 -------GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLE 424

Query: 180 SLTALVLSSNKLSLL 194
            L  L +S     + 
Sbjct: 425 KLLYLDISYTNTKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 20/190 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSL-LS--LIAYCKENFLPSLGNLTKLNDLYL 95
           L +L+ L   +   AS   +    L +L  L ++   I  CK        NLT L  + L
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDL 160

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL 155
             N       + L  L +   +                L ++ N ++  +    F+   L
Sbjct: 161 SYNYIQTITVNDLQFLRENPQV-------------NLSLDMSLNPID-FIQDQAFQGIKL 206

Query: 156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET 215
             L L  N  S    +   L NL  L    L   +        +        +     + 
Sbjct: 207 HELTLRGNFNSSN-IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 216 LASSHIFCTT 225
              ++    +
Sbjct: 266 FRLTYTNDFS 275

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 68  SLLSLIAYCKENFLPSL-GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL---TGEILV 123
           S    IA+ +   L  +   L     L L  N        S   L QL  L   +    +
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 124 EI-----RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLN 177
            I     R L  L IL L  +++   +    F+ L +L  L L    LS     +    N
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 178 LESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
           L++LT L LS N++  L        L +   I
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 31/194 (15%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLT--------- 88
           L  +  + L + + A         L  L +L L   A    +F+PS+ ++          
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396

Query: 89  -----KLNDLYLFGNDFSG-KVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHIL 134
                  N ++L  N      +   L  +  L  L        +        +   L  L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 135 RLAENQLEGSVPSSIFE-----LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
            L EN L+ +  + +       L +L+ L L+ N L+       V  +L +L  L L+SN
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP--PGVFSHLTALRGLSLNSN 514

Query: 190 KLSLLAGTTVNTNL 203
           +L++L+   +  NL
Sbjct: 515 RLTVLSHNDLPANL 528

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 17/176 (9%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLN 91
           E L +LKVL+L           A   L +L  L         N L  L       L K+ 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL-----NLSYNLLGELYSSNFYGLPKVA 341

Query: 92  DLYLFGNDFSGKVPDSLGDLLQLNYL--TGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149
            + L  N  +     +   L +L  L      L  I  +  +  + L+ N+L  ++P   
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKIN 400

Query: 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
                +    LS+N L     L   LL +  L  L+L+ N+ S  +G    +  P+
Sbjct: 401 LTANLI---HLSENRLENLDILYF-LLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 9/173 (5%)

Query: 25  TLLQSPSLANLAEKLAN--LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP 82
               S           N  L++L +        +    +N  S     SLI         
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA- 245

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDL-LQLNYLTGEILVEIRKLTQLHILRLAENQL 141
                   N      N F+G    S+  L L   ++          L  L +L LA N++
Sbjct: 246 ---GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 142 EGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
                 + + L NL+ L+LS N L            L  +  + L  N ++++
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDLQKNHIAII 353

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 22/170 (12%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
           + ++  + L   N   T+P  +   + +   LS       + L  L  +  L  L L  N
Sbjct: 380 IPSIPDIFLSG-NKLVTLPKINLTANLIH--LSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 99  DFSG-------KVPDSLGDL-LQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSV 145
            FS            SL  L L  N L      E+       L+ L +L L  N L  S+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SL 495

Query: 146 PSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           P  +F  L  LR L L+ N L+     ++      +L  L +S N+L   
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL----PANLEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL--TGEILVEIRK-----LTQLHILR 135
               L  L  L L  N  +    ++   L  L  L  +  +L E+       L ++  + 
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L +N +      +   L  L+ LDL DN L+        +  + S+  + LS NKL  L 
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-------TIHFIPSIPDIFLSGNKLVTLP 397

Query: 196 GTTVNTNLPNF 206
              +  NL + 
Sbjct: 398 KINLTANLIHL 408

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 34/186 (18%), Positives = 52/186 (27%), Gaps = 30/186 (16%)

Query: 39  LANLKVLHLG--QVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLTKLNDLYL 95
           L +L  L L    ++ A        NL +L  L LS          PS G L  L  +  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 96  FGNDFSGKVPDSLGDL---------LQLNYLTGEI------LVEIRKLTQLHILRLAENQ 140
             N         L  L         L  N L   +       +   +   L IL ++ N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 141 LEGSVPS------------SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSS 188
               +              S+    ++       +N+          L   S+  L LS 
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

Query: 189 NKLSLL 194
             +  L
Sbjct: 276 GFVFSL 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 19/184 (10%)

Query: 26  LLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG 85
              S +L    + L+  +  +           +  AN ++           K      L 
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYN-ADRNRWHSAWRQANSNNPQIETRTGRALKA-TADLLE 76

Query: 86  NLT--KLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLA 137
           + T      L L       + PD    L  L ++T       E+   +++   L  L LA
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 138 ENQLEGSVPSSIFELRNLRALDLSDNNLS-------GTGDLNMVLLNLESLTALVLSSNK 190
            N L  ++P+SI  L  LR L +              + D +     L +L +L L    
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 191 LSLL 194
           +  L
Sbjct: 195 IRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 11/148 (7%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLG 85
           L S   +   + L NL+ L L       ++P + ANL +L SL   I     + L  ++ 
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSLK--IRNSPLSALGPAIH 226

Query: 86  NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-------GEILVEIRKLTQLHILRLAE 138
           +L KL +L L G       P   G    L  L          + ++I +LTQL  L L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLS 166
                 +PS I +L     + +  +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILR 135
                L+ L  + +       ++PD++     L  LT        +   I  L +L  L 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156

Query: 136 LAENQLEGSVPSSI---------FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVL 186
           +        +P  +           L NL++L L    +     L   + NL++L +L +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKI 213

Query: 187 SSNKLSLL 194
            ++ LS L
Sbjct: 214 RNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSL-------FSLLSLI--AYCKENFLPSLGNLT 88
           + A L+ L L + N    +P + A+L+ L          L+ +       +       L 
Sbjct: 125 QFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 89  KLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQL 141
            L  L L        +P S+ +L  L       + L+  +   I  L +L  L L     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 142 EGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL-----NLESLTALVLSSNK 190
             + P        L+ L L D +       N++ L      L  L  L L    
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCS-------NLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 21/156 (13%), Positives = 36/156 (23%), Gaps = 24/156 (15%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
            +  + L+              +     ++        + +      N          G 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNAD----RNRWHSAWRQANSNNPQIETRTGR 66

Query: 99  DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRAL 158
                  D L D                       L L    L    P   F L +L+ +
Sbjct: 67  ALK-ATADLLEDA---------------TQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 159 DLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            +    L    +L   +     L  L L+ N L  L
Sbjct: 110 TIDAAGLM---ELPDTMQQFAGLETLTLARNPLRAL 142

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 13/117 (11%), Positives = 29/117 (24%), Gaps = 7/117 (5%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQL 141
               + +   +LY  G+       D L    +             +    +  ++     
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 142 EG--SVPSSIFELR--NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
               +    + +       AL+L    L            L  L  + + +  L  L
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLMEL 119

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 24/155 (15%)

Query: 37  EKLANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYL 95
            ++ +L+ L LG++   S +   +   LS+L  L   +A C    +P+L  L KL++L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN--LAMCNLREIPNLTPLIKLDELDL 214

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LRN 154
            GN  S   P S                  + L  L  L + ++Q++  +  + F+ L++
Sbjct: 215 SGNHLSAIRPGSF-----------------QGLMHLQKLWMIQSQIQ-VIERNAFDNLQS 256

Query: 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           L  ++L+ NNL+       +   L  L  + L  N
Sbjct: 257 LVEINLAHNNLTLLPH--DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 23/184 (12%)

Query: 39  LANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
           LANL  L L   N  +T+P  +   LS L  L     + + N + S+       +  L  
Sbjct: 111 LANLNTLELFD-NRLTTIPNGAFVYLSKLKEL-----WLRNNPIESIPSYAFNRIPSLRR 164

Query: 93  LYLFG-NDFSGKVPDSLGDLLQLNYL--TGEILVEI---RKLTQLHILRLAENQLEGSVP 146
           L L      S     +   L  L YL      L EI     L +L  L L+ N L  ++ 
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS-AIR 223

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
              F+ L +L+ L +  + +           NL+SL  + L+ N L+LL      T L +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHNNLTLLPHDLF-TPLHH 280

Query: 206 FTII 209
              I
Sbjct: 281 LERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 93  LYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSV 145
           L L  N       +S   L  L    L+   +  I       L  L+ L L +N+L  ++
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 146 PSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSS-NKLSLLA 195
           P+  F  L  L+ L L +N +            + SL  L L    +LS ++
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYIS 177

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
           S   L  L  L +        + ++                    L+ L IL+L  NQ  
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFR----------------GLSSLIILKLDYNQFL 92

Query: 143 GSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNT 201
             + +  F  L NL  L L+  NL G          L SL  LVL  N +  +   +   
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 202 NLPNFTII 209
           N+  F ++
Sbjct: 152 NMRRFHVL 159

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 28/179 (15%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGN----------- 86
           K  ++  L L       ++     +  +   + SLI     N   S G+           
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 87  ----LTKLNDLYLFGNDFS---GKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHIL 134
                + +    L  +        V     DL QL  L    + +I       LT L  L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL-TLAQNEINKIDDNAFWGLTHLLKL 328

Query: 135 RLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L++N L GS+ S +FE L  L  LDLS N++   G  +   L L +L  L L +N+L 
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 31/184 (16%)

Query: 25  TLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL 84
             +    + +L    +       G  N      +    L +   + +      ++ + +L
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS-GVKTC--DLSKSKIFAL 290

Query: 85  -----GNLTKLNDLYLFGNDFSGKVP----DSLGDLLQLNYLTGEILVEI-----RKLTQ 130
                 + T L  L L  N+ + K+       L  LL+L  L+   L  I       L +
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL-NLSQNFLGSIDSRMFENLDK 348

Query: 131 LHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALV 185
           L +L L+ N +  ++    F  L NL+ L L  N L     G  D       L SL  + 
Sbjct: 349 LEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD------RLTSLQKIW 401

Query: 186 LSSN 189
           L +N
Sbjct: 402 LHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 40/203 (19%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPY------ASANLSSLFSLLSLIAYCKENF 80
           ++    A+    +    VL L   N   ++           + + L      +    E +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 81  LPSLG-----NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIR--------- 126
           L           T +  L L GN F   +     D +    +   IL             
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 127 -------------KLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDL- 171
                        + + +    L+++++  ++  S+F    +L  L L+ N ++    + 
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN---KID 315

Query: 172 NMVLLNLESLTALVLSSNKLSLL 194
           +     L  L  L LS N L  +
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSI 338

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 43/168 (25%), Positives = 58/168 (34%), Gaps = 14/168 (8%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLYLF 96
             NL +L L     A     A   L+ L   L L    +   +       L +L+ L+L 
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALL-EQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 97  GNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSVPSSI 149
                   P     L  L   YL    L  +     R L  L  L L  N++  SVP   
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172

Query: 150 FE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196
           F  L +L  L L  N ++          +L  L  L L +N LS L  
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT---GEILVEI-----RKLTQLHIL 134
           S      L  L+L  N  +     +   L  L  L       L  +       L +LH L
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 135 RLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193
            L    L+  +   +F  L  L+ L L DN L    D      +L +LT L L  N++S 
Sbjct: 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISS 167

Query: 194 L 194
           +
Sbjct: 168 V 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 46/162 (28%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 39  LANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLYL 95
           LA L+ L L       +V  A+   L  L +L   +  C    L       L  L  LYL
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH--LDRCGLQELGPGLFRGLAALQYLYL 136

Query: 96  FGNDFSGKVPDSLGDLLQLNYLT--GEILVEI-----RKLTQLHILRLAENQLEGSVPSS 148
             N       D+  DL  L +L   G  +  +     R L  L  L L +N++   V   
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 149 IFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
            F  L  L  L L  NNLS        L  L +L  L L+ N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDN 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 26/162 (16%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG---NLTKLNDL 93
               +LK L L   N   T+      L  L  L     +     +       +L  L  L
Sbjct: 75  FGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-L 152
            +                         I      L+ L +L++A N  + +    IF  L
Sbjct: 132 DISHT--------------HTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           RNL  LDLS   L           +L SL  L +S N    L
Sbjct: 175 RNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 37  EKLANLKVLHLG--QVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-LGNLTKLNDL 93
           +KL  L  L L    ++       +    +SL  L   +++     + S    L +L  L
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD--LSFNGVITMSSNFLGLEQLEHL 106

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-L 152
               ++       S+                   L  L  L ++         + IF  L
Sbjct: 107 DFQHSNLKQMSEFSV----------------FLSLRNLIYLDISHTHTR-VAFNGIFNGL 149

Query: 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            +L  L ++ N+      L  +   L +LT L LS  +L  L
Sbjct: 150 SSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 13/131 (9%)

Query: 75  YCKENFLPSL--GNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI 125
            C    L S+  G  +    L L  N            L QL       N L+ +     
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 126 --RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTA 183
                T L  L L+ N +  ++ S+   L  L  LD   +NL    + + V L+L +L  
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIY 130

Query: 184 LVLSSNKLSLL 194
           L +S     + 
Sbjct: 131 LDISHTHTRVA 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 129 TQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS 187
           +    L L  N+L+ S+P  +F+ L  L  L LS N LS  G  +       SL  L LS
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 188 SNKLSLLAGT 197
            N +  ++  
Sbjct: 87  FNGVITMSSN 96

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLL----SLIAYCKENFLPSLGNLTKLNDL 93
            L NL  L +   +T          LSSL  L     S       +    L NLT L   
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--- 180

Query: 94  YLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSVP 146
            L         P +   L  L    ++      +     + L  L +L  + N +  +  
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

Query: 147 SSIFE--LRNLRALDLSDNNLS 166
               +    +L  L+L+ N+ +
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 24/155 (15%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
            ++ +L  L LG++     +   +     LF+L  L +  C    +P+L  L  L +L +
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LRN 154
            GN F    P S                    L+ L  L +  +Q+   +  + F+ L +
Sbjct: 226 SGNHFPEIRPGSF-----------------HGLSSLKKLWVMNSQVS-LIERNAFDGLAS 267

Query: 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           L  L+L+ NNLS       +   L  L  L L  N
Sbjct: 268 LVELNLAHNNLSSLPH--DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 23/184 (12%)

Query: 39  LANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
           LA+L  L L   N  + +P  +   LS L  L     + + N + S+       +  L  
Sbjct: 122 LASLNTLELFD-NWLTVIPSGAFEYLSKLREL-----WLRNNPIESIPSYAFNRVPSLMR 175

Query: 93  LYLFG-NDFSGKVPDSLGDLLQLNYLT--GEILVEI---RKLTQLHILRLAENQLEGSVP 146
           L L            +   L  L YL      + ++     L  L  L ++ N     + 
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP-EIR 234

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
              F  L +L+ L + ++ +S           L SL  L L+ N LS L      T L  
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPHDLF-TPLRY 291

Query: 206 FTII 209
              +
Sbjct: 292 LVEL 295

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 93  LYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSV 145
           L L  N+      D+   L  L    L    + +I       L  L+ L L +N L   +
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 146 PSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSS-NKLSLLA 195
           PS  FE L  LR L L +N +            + SL  L L    KL  ++
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKKLEYIS 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 37  EKLANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLPSL-----GNLTKL 90
             L+NL  L + + N    +      +L +L SL        +N L  +       L  L
Sbjct: 101 TGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSL-----EVGDNDLVYISHRAFSGLNSL 154

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEG 143
             L L   + +    ++L  L  L    L    +  I     ++L +L +L ++      
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           ++  +     NL +L ++  NL+    L   + +L  L  L LS N +S + 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILR 135
              +   L +L L  N  S   P +  +L  L    L    L  I       L+ L  L 
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110

Query: 136 LAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           ++EN++   +   +F+ L NL++L++ DN+L            L SL  L L    L+ +
Sbjct: 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPS--LGNLTKLNDLYL 95
           L +L+ L L +    +++P  +  LS L  L+ L + +   N +       L +L  L +
Sbjct: 151 LNSLEQLTLEK-CNLTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 96  FGNDFSGKVPDSLGDLLQLNYL--TGEILVEI-----RKLTQLHILRLAENQLEGSVPSS 148
               +   +  +    L L  L  T   L  +     R L  L  L L+ N +  ++  S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGS 266

Query: 149 IFE-LRNLRALDLSDNNLSGTGDLNM-VLLNLESLTALVLSSNKLSLLAGTT 198
           +   L  L+ + L    L+    +       L  L  L +S N+L+ L  + 
Sbjct: 267 MLHELLRLQEIQLVGGQLA---VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLY 94
           ++L  LKVL +       T+        +L SL   I +C    +P   + +L  L  L 
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS--ITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 95  LFGNDFSGKVPDSLGDLLQLN--YLTGEILVEIRK-----LTQLHILRLAENQLEGSVPS 147
           L  N  S      L +LL+L    L G  L  +       L  L +L ++ NQL  ++  
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313

Query: 148 SIFE-LRNLRALDLSDNNLS 166
           S+F  + NL  L L  N L+
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL 184
                L  L L EN +  +V    F  L NLR L L  N L        V   L +LT L
Sbjct: 53  ASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPL--GVFTGLSNLTKL 109

Query: 185 VLSSNKLSLLAGTT 198
            +S NK+ +L    
Sbjct: 110 DISENKIVILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSS 188
           T+  +L L +N+++           +L  L+L++N +S          NL +L  L L S
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNLFNLRTLGLRS 89

Query: 189 NKLSLL 194
           N+L L+
Sbjct: 90  NRLKLI 95

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 19/177 (10%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGND 99
            +  +LHL +    +         + L  L   +   +   L   G L  L  L L  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLN--LDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 100 FSG--KVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVPSSIFE- 151
                 +  +L  L  L  ++   L  +     R L +L  L L  N+L+ ++P  +   
Sbjct: 89  LQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 152 LRNLRALDLSDNNLSG--TGDLNMVLLNLESLTALVLSSNKL-SLLAGTTVNTNLPN 205
              L  L L++NNL+    G    +L  LE+L  L+L  N L ++  G   +  LP 
Sbjct: 147 TPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLYL 95
            L  L  L L   N   ++P     L +L ++L + ++ +   LP   L  L +L +LYL
Sbjct: 75  TLPVLGTLDLSH-NQLQSLPLLGQTLPAL-TVLDV-SFNRLTSLPLGALRGLGELQELYL 131

Query: 96  FGNDFS---GKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVPS 147
            GN+       +      L +L  L    L E+       L  L  L L EN L  ++P 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 148 SIFELRNLRALDLSDN 163
             F    L    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLNDLY 94
           A+ + L L     A+        L+ L  L         N L +L      +LT+L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWL-----NLDYNQLQTLSAGVFDDLTELGTLG 89

Query: 95  LFGNDFS---GKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVP 146
           L  N  +     V D L  L +L YL G  L  +      +LT+L  LRL  NQL+ S+P
Sbjct: 90  LANNQLASLPLGVFDHLTQLDKL-YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           +  F+ L NL+ L LS N L            L  L  + L  N
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 27/156 (17%)

Query: 27  LQSPSLANLAEK----LANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKENFL 81
           LQS  LA L++     L  L  L+L   N   T+      +L+ L +L         N L
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTL-----GLANNQL 95

Query: 82  PSL-----GNLTKLNDLYLFGNDFSG---KVPDSLGDLLQLNYLTGEILVEI-----RKL 128
            SL      +LT+L+ LYL GN        V D L  L +L  L    L  I      KL
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-RLNTNQLQSIPAGAFDKL 154

Query: 129 TQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDN 163
           T L  L L+ NQL+ SVP   F+ L  L+ + L  N
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 21  NAMKTLLQSPSLANL-AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKE 78
             +  LL   S AN+   ++ +L  + L  +N           +    ++  L I     
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHA 78

Query: 79  NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQL 131
                +  L+ L  L + G D +     +L  L  L       +     IL +I  L ++
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
           + + L+ N     +   +  L  L++L++  + +     +     +   L  L   S  +
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE----DFPKLNQLYAFSQTI 193

Query: 192 S 192
            
Sbjct: 194 G 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC---KENFLPSLGNLTKLNDL 93
           E   N+K L +     A+        +S L +L  L         + +P+L  LT L  L
Sbjct: 63  EYAHNIKDLTINN-IHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYL----TGEI--LVEIRKLTQLHILRLAENQLEGSVPS 147
            +  +     +   +  L ++N +     G I  ++ ++ L +L  L +  + +      
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--R 175

Query: 148 SIFELRNLRALDLSDNNLSG 167
            I +   L  L      + G
Sbjct: 176 GIEDFPKLNQLYAFSQTIGG 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
             +L+ L L   N  + V    + + SLF           N L +L     + +L    N
Sbjct: 164 TTSLQNLQLSS-NRLTHVD--LSLIPSLFHA-----NVSYNLLSTLAIPIAVEELDASHN 215

Query: 99  DFSGKVPDSLGDLLQLNYLTGEILVEI---RKLTQLHILRLAENQLEGSVPSSIFE-LRN 154
             +        +L  L  L    L +         L  + L+ N+LE  +    F  ++ 
Sbjct: 216 SINVVRGPVNVELTILK-LQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR 273

Query: 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           L  L +S+N L     LN+    + +L  L LS N L  +
Sbjct: 274 LERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHIL 134
              L N   L ++ L  N+    +      + +L  L         + +  + +  L +L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L+ N L   V  +  +   L  L L  N++       + L    +L  L LS N   
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 21/110 (19%)

Query: 86  NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV 145
            L     +    +               +  L   +L       Q+ +L L + Q+E  +
Sbjct: 43  TLNNQKIVTFKNS--------------TMRKLPAALL---DSFRQVELLNLNDLQIE-EI 84

Query: 146 PSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            +  F     ++ L +  N +        V  N+  LT LVL  N LS L
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDLSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 30/179 (16%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLN 91
                ++ L++G        P+   N+  L  L       + N L SL      N  KL 
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-----VLERNDLSSLPRGIFHNTPKLT 144

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS 144
            L +  N+      D+      L       N LT    V++  +  L    ++ N L   
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL--- 198

Query: 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
             S++     +  LD S N+++              LT L L  N L+  A       L
Sbjct: 199 --STLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGL 250

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
           S  +  +L  L L   +       +   L  L       N +    L     L+ L  L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
             E  L       I  L+ L+ L+++ N +  +  L     NL +L  L LSSNK+  +
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 16/169 (9%)

Query: 38  KLANLKVLHLG--QVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-LGNLTKLNDLY 94
            L +L+ L L    ++       +    +SL  L   +++     + S    L +L  L 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD--LSFNGVITMSSNFLGLEQLEHLD 402

Query: 95  LFGNDFS----GKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
              ++        V  SL +L+ L     +           L+ L +L++A N  + +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
             IF  LRNL  LDLS   L           +L SL  L ++SN+L  +
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 18/167 (10%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG---NLTKLNDLY 94
              +LK L L   N   T+      L  L  L     +     +       +L  L  L 
Sbjct: 371 GTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 95  LFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEGSVP 146
           +               L  L       N      L +I  +L  L  L L++ QLE  + 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLS 486

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            + F  L +L+ L+++ N L    D   +   L SL  + L +N   
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDG--IFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 37/175 (21%), Positives = 57/175 (32%), Gaps = 10/175 (5%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL--IAYCKENFLPSLGNLTKLNDLY 94
           E L NL +    ++           +L +  + +S   +       +           L 
Sbjct: 252 EGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 95  LFGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAENQLE--GSVPSSIF 150
           L    F       L  L  L      G        L  L  L L+ N L   G    S F
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
              +L+ LDLS N +     ++   L LE L  L    + L  ++  +V  +L N
Sbjct: 371 GTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 40/151 (26%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 65  SLFSLLSL-IAYCKENFLPSLGNLTKLNDLYLFGND--FSGKVPDSLGDLLQLNYLT--- 118
            L SL  L     K     S  +L  L  L L  N   F G    S      L YL    
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 119 ---GEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNLSGTGDLNMV 174
                +      L QL  L    + L+     S+F  LRNL  LD+S  +       N +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGI 440

Query: 175 LLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
              L SL  L ++ N         + T L N
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 88  TKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQ 140
               +L L  N        S     +L         +        + L+ L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 141 LEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV 199
           ++ S+    F  L +L+ L   + NL+   +    + +L++L  L ++ N +        
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 200 NTNLPNFTII 209
            +NL N   +
Sbjct: 145 FSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 13/180 (7%)

Query: 26  LLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSL---------LSLIAYC 76
                 +    + LA L+V  L      +       + S+L  L         L+ + Y 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 77  KENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIR--KLTQLHIL 134
            ++ +     LT ++   L           S     Q   L      +    KL  L  L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
               N+       S  +L +L  LDLS N LS  G  +       SL  L LS N +  +
Sbjct: 331 TFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLYL 95
               L+VL L +    +    A  +LS L +L+  +       L       L+ L  L  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI--LTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 96  FGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPS 147
              + +      +G L  L  L        + ++      LT L  L L+ N+++    +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 148 SIFELRNLRA----LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            +  L  +      LDLS N ++    +         L  L L +N  SL    T    L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 204 PNFTI 208
               +
Sbjct: 225 AGLEV 229

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 21/153 (13%)

Query: 31  SLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPS--LGNL 87
           ++++    L  L+ L     +    +   S    SL +L+ L I++       +     L
Sbjct: 387 TMSSNFLGLEQLEHLDFQH-SNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 88  TKLNDLYLFGNDFSGKVPDSLGDLL-----------QLNYLTGEILVEIRKLTQLHILRL 136
           + L  L + GN F       +   L           QL  L+         L+ L +L +
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNM 501

Query: 137 AENQLEGSVPSSIFE-LRNLRALDLSDNNLSGT 168
           A NQL+ SVP  IF+ L +L+ + L  N    +
Sbjct: 502 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLPSLGNLTKLNDLYL 95
           +  A     +L + +    V       + L S+  +IA   +   +  +  L  +  L+L
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 72

Query: 96  FGNDFSGKVPDS-LGDLLQLNYLTGEI--LVEIRKLTQLHILRLAENQLEGSVPSSIFEL 152
            GN  +   P + L +L  L     +I  L  ++ L +L  L L  N +  S  + +  L
Sbjct: 73  NGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHL 130

Query: 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
             L +L L +N ++    L+     L  L  L L  N++S +      T L
Sbjct: 131 PQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVPLAGLTKL 177

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
            +L ++  +     +  S        +  L ++  L +   K   +  L NL  L  L+L
Sbjct: 40  NELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFL 94

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
             N         L DL +L  L+        +  +  L QL  L L  N++  +  + + 
Sbjct: 95  DENKIKDLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLS 150

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            L  L  L L DN +S    L      L  L  L LS N +S L       NL
Sbjct: 151 RLTKLDTLSLEDNQISDIVPLA----GLTKLQNLYLSKNHISDLRALAGLKNL 199

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L  + V+ LG  N   +    +     +  L  + IA      +P  G    L +L+L
Sbjct: 142 NGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHL 199

Query: 96  FGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSVPSS 148
            GN  +     SL  L  L    L+   +  +          L  L L  N+L   VP  
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 149 IFELRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALVLSSNKLSL 193
           + + + ++ + L +NN+S                 S + + L SN +  
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEIRK--LTQLHILRLAE 138
              NL  L+ L L  N  S   P +   L++L   YL+   L E+ +     L  LR+ E
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 130

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           N++   V  S+F  L  +  ++L  N L  +G  N     ++ L+ + ++   ++
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG-------NLTKLN 91
              L+ L +   N  + V    +  + L  ++ +      N L S G        + KL+
Sbjct: 120 PKTLQELRV-HENEITKVR--KSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQGMKKLS 174

Query: 92  DLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVP 146
            + +   + +         L +L +L G  + ++     + L  L  L L+ N +     
Sbjct: 175 YIRIADTNITTIPQGLPPSLTEL-HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198
            S+    +LR L L++N L     +   L + + +  + L +N +S +    
Sbjct: 234 GSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 14/121 (11%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRL 136
           SL  L  L  L L  N  S     SL +   L  L        ++   +     + ++ L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270

Query: 137 AENQLEGSVPSSIF-------ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
             N +  ++ S+ F       +  +   + L  N +            +    A+ L + 
Sbjct: 271 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

Query: 190 K 190
           K
Sbjct: 330 K 330

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 26/194 (13%)

Query: 21  NAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF 80
            A+  LL           L  +  +    ++   +      ++  +      + +     
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 81  L---PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLA 137
           L     L  L  +  L L  N                      +   +  L  L +L+ +
Sbjct: 453 LTVLCHLEQLLLVTHLDLSHNRLR------------------ALPPALAALRCLEVLQAS 494

Query: 138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG- 196
           +N LE +V   +  L  L+ L L +N L  +  +   L++   L  L L  N L    G 
Sbjct: 495 DNALE-NVDG-VANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 197 -TTVNTNLPNFTII 209
              +   LP+ + I
Sbjct: 552 QERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 6/143 (4%)

Query: 62  NLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-NYLTGE 120
            L  L              + +L  L    +   + +      P     L  L +    E
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLES 180
             V   +   + +L LA   L  +V   + +L  +  LDLS N L     L   L  L  
Sbjct: 433 NSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR---ALPPALAALRC 487

Query: 181 LTALVLSSNKLSLLAGTTVNTNL 203
           L  L  S N L  + G      L
Sbjct: 488 LEVLQASDNALENVDGVANLPRL 510

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 17/162 (10%)

Query: 31  SLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKL 90
            L +L    + L+ L +   N  +++P   + L  L++        +   LP+L   + L
Sbjct: 172 QLTSLPMLPSGLQELSVSD-NQLASLPTLPSELYKLWAY-----NNRLTSLPAL--PSGL 223

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSSI 149
            +L + GN  +  +P    +L +L  ++G  L  +    + L  L +  NQL   +P S+
Sbjct: 224 KELIVSGNRLTS-LPVLPSELKELM-VSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL 280

Query: 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
             L +   ++L  N LS        L  L  +T+    S  +
Sbjct: 281 IHLSSETTVNLEGNPLS-----ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGN 86
           +   +L +L      L+ L +   N  +++P     L  L              LP+L  
Sbjct: 68  IPDNNLTSLPALPPELRTLEVSG-NQLTSLPVLPPGLLELSIF-----SNPLTHLPAL-- 119

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
            + L  L++FGN  +  +P     L +L+    ++       ++L  L    NQL  S+P
Sbjct: 120 PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLP 177

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
                   L+ L +SDN L+    L         L  L   +N+L+ L
Sbjct: 178 MLP---SGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 29/161 (18%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL----PSLGNLTKLNDLY 94
            A++  L +   N  +++P     L +L            N L         L +L+   
Sbjct: 60  PAHITTLVIPD-NNLTSLPALPPELRTL--------EVSGNQLTSLPVLPPGLLELSIFS 110

Query: 95  LFGNDFSGKVPDSLGDLLQLNYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSSIFELR 153
                    +P  L  L    ++ G  L  +      L  L +++NQL  S+P+   EL 
Sbjct: 111 NPLTHLP-ALPSGLCKL----WIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELC 164

Query: 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            L      +N L+       + +    L  L +S N+L+ L
Sbjct: 165 KL---WAYNNQLT------SLPMLPSGLQELSVSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEI-RKLTQLHILRLAENQLEGSV 145
                 L +  +  +  +PD L   +    +    L  +     +L  L ++ NQL  S+
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SL 96

Query: 146 PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           P     L  L        +L               L  L +  N+L+ L
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPA---------LPSGLCKLWIFGNQLTSL 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
             +L+ L L   N  + V    + + SLF           N L +L     + +L    N
Sbjct: 170 TTSLQNLQLSS-NRLTHVD--LSLIPSLFHA-----NVSYNLLSTLAIPIAVEELDASHN 221

Query: 99  DFSGKVPDSLGDLLQLNYLTGEILVEI---RKLTQLHILRLAENQLEGSVPSSIFE-LRN 154
             +        +L  L  L    L +         L  + L+ N+LE  +    F  ++ 
Sbjct: 222 SINVVRGPVNVELTILK-LQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR 279

Query: 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           L  L +S+N L     LN+    + +L  L LS N L  +
Sbjct: 280 LERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHIL 134
              L N   L ++ L  N+    +      + +L  L         + +  + +  L +L
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            L+ N L   V  +  +   L  L L  N++       + L    +L  L LS N   
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLP--SLGNLTKLNDLYL 95
           L N K++     +T   +P  +A L S   +  L +   +   +   +      +  LY+
Sbjct: 50  LNNQKIVTFKN-STMRKLP--AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 96  FGNDFSGKVPDSLGDLLQLNYLT------GEILVEI-RKLTQLHILRLAENQLEGSVPSS 148
             N      P    ++  L  L         +   I     +L  L ++ N LE  +   
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 149 IFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            F+   +L+ L LS N L+     ++ L  + SL    +S N LS LA       L
Sbjct: 166 TFQATTSLQNLQLSSNRLT-----HVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 86  NLTKLNDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAE 138
            L     +    +         L    Q+    L    + EI          +  L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT 197
           N +   +P  +F+ +  L  L L  N+LS       +  N   LT L +S+N L  +   
Sbjct: 109 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 198 T 198
           T
Sbjct: 166 T 166

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 20/179 (11%)

Query: 33  ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLN 91
           A+L +   N+K L L   N  S +  A   L+    L  L ++         L +L+ L 
Sbjct: 27  ASLRQSAWNVKELDLSG-NPLSQISAAD--LAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS 144
            L L  N         L     +       N ++    V   +      + LA N++   
Sbjct: 84  TLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITML 135

Query: 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
                     ++ LDL  N +  T +   +  + ++L  L L  N +  + G  V   L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
           +  + L   +    +    +  L L+ N L     + +     L  L+LS N L  T DL
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76

Query: 172 NMVLLNLESLTALVLSSNKLSLL 194
                +L +L  L L++N +  L
Sbjct: 77  E----SLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 22/188 (11%)

Query: 36  AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL------GNLTK 89
             +    K ++L                S +  L       K N + ++       +   
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-----DLKLNEIDTVNFAELAASSDT 170

Query: 90  LNDLYLFGNDFSGKVPDS--LGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEG 143
           L  L L  N     V        L  L    N L   +  E +    +  + L  N+L  
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            +  ++   +NL   DL  N     G L       + +  +   + K  L         +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 204 PNFTIIGS 211
           P     G+
Sbjct: 286 PTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILR 135
              +   + +L L GN  S      L    +L       N L     +++  L+ L  L 
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLD 86

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L  N +       +    ++  L  ++NN+S      +     +    + L++NK+++L 
Sbjct: 87  LNNNYV-----QELLVGPSIETLHAANNNIS-----RVSCSRGQGKKNIYLANNKITMLR 136

Query: 196 GTTVNTNLPN 205
                     
Sbjct: 137 DLDE-GCRSR 145

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 125 IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL 184
            +   +  I ++ ++ L+ ++ S      N++ LDLS N LS        L     L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLELL 63

Query: 185 VLSSNKLSLLAGTTVNTNL 203
            LSSN L         + L
Sbjct: 64  NLSSNVLYETLDLESLSTL 82

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAE 138
           LP L N + L  + +  N    K+PD    L  +       E L E++ L  L  +    
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 204

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           N L+  +P       +L ++   +N L    +L     NL  LT +   +N L  L
Sbjct: 205 NSLK-KLPDLPL---SLESIVAGNNILEELPELQ----NLPFLTTIYADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 25/161 (15%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG 97
            L  L  ++    N+   +P    +L S+              LP L NL  L  +Y   
Sbjct: 193 NLPFLTAIYADN-NSLKKLPDLPLSLESIV-----AGNNILEELPELQNLPFLTTIYADN 246

Query: 98  NDFSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153
           N     +PD    L  L    NYLT ++    + LT L +     + L    P       
Sbjct: 247 NLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP------- 297

Query: 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           NL  L+ S N +    DL        SL  L +S+NKL  L
Sbjct: 298 NLYYLNASSNEIRSLCDL------PPSLEELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQL 141
               N+    + Y   +++    P   G+  ++               Q H L L    L
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC----LDRQAHELELNNLGL 83

Query: 142 EGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
             S+P       +L +L  S N+L+   +L  +  +L+SL     +   LS L
Sbjct: 84  S-SLPELPP---HLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKALSDL 129

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----------GN 86
            + +    +          P  +     +   +S +  C +     L             
Sbjct: 32  NVKSKTEYYNAWSEWERNAPPGNGEQREM--AVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
              L  L    N  + ++P+    L  L      +         L  L ++ NQLE  +P
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP 147

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
             +     L+ +D+ +N+L    DL        SL  +   +N+L  L
Sbjct: 148 E-LQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 22/164 (13%)

Query: 32  LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-GNLTKL 90
           + +L +   +L+ L++   N    +P     L  L            N L  +      L
Sbjct: 309 IRSLCDLPPSLEELNVSN-NKLIELPALPPRLERL--------IASFNHLAEVPELPQNL 359

Query: 91  NDLYLFGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
             L++  N    + PD    +  L++N    E+    + L QLH   +  N L    P  
Sbjct: 360 KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLH---VETNPLR-EFPDI 414

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
              + +   L ++   +    +        + L   V   +   
Sbjct: 415 PESVED---LRMNSERVVDPYEF--AHETTDKLEDDVFEHHHHH 453

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 32  LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-GNLTKL 90
           L+ L E  A+LK L +   N  + +P   A L  +            N L  L    T L
Sbjct: 112 LSTLPELPASLKHLDVDN-NQLTMLPELPALLEYI--------NADNNQLTMLPELPTSL 162

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQL----HILRLAENQLE 142
             L +  N  +  +P+    L  L    N L   +     +           R  EN++ 
Sbjct: 163 EVLSVRNNQLT-FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN 202
             +P +I  L     + L DN LS     + +  +L   TA           + +    N
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLS-----SRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 203 LPNFTIIGSVHETLASS 219
             +  +  +V      +
Sbjct: 275 TLHRPLADAVTAWFPEN 291

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142
           +   LT L+ L L  N               LN+++ E       +  L  L L+ N L 
Sbjct: 59  TPTRLTNLHSLLLSHN--------------HLNFISSEAF---VPVPNLRYLDLSSNHLH 101

Query: 143 GSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            ++   +F  L+ L  L L +N++           ++  L  L LS N++S  
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 36/163 (22%)

Query: 38  KLANLKVLHLGQVNTASTVPYAS-ANLSSLFSL-LSLIAYCKENFLPSLG-----NLTKL 90
           +L NL  L L   N  + +   +   + +L  L LS       N L +L      +L  L
Sbjct: 62  RLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLS------SNHLHTLDEFLFSDLQAL 114

Query: 91  NDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
             L L+ N               +  +          + QL  L L++NQ+    P  + 
Sbjct: 115 EVLLLYNN--------------HIVVVDRNAF---EDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 151 E----LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           +    L  L  LDLS N L      ++  L       L L +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 23/183 (12%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
           +  NL+ L L   N  +T+   S   SSL SL  L      N+L +L       L+ L  
Sbjct: 74  RCVNLQALVLTS-NGINTIEEDS--FSSLGSLEHL--DLSYNYLSNLSSSWFKPLSSLTF 128

Query: 93  LYLFGNDFS----GKVPDSLGDLLQLNYLTGEILVEIR-----KLTQLHILRLAENQLEG 143
           L L GN +       +   L  L  L     +   +I+      LT L  L +  + L+ 
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 187

Query: 144 SVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN 202
           S      + ++N+  L L          L + +    S+  L L    L     + ++T 
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 203 LPN 205
             N
Sbjct: 246 ETN 248

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 26/149 (17%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLN 91
             L  L+ L +   +  S  P +  ++ ++  L              L        + + 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-----ILHMKQHILLLEIFVDVTSSVE 225

Query: 92  DLYLFGND--------FSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLA 137
            L L   D         S    +SL        +        +++  + +++ L  L  +
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 138 ENQLEGSVPSSIFE-LRNLRALDLSDNNL 165
            NQL+ SVP  IF+ L +L+ + L  N  
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 27  LQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLP--S 83
            ++    +L   L  L++L +G ++T + +     + + L  L  L I           S
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 84  LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEG 143
           L ++  ++ L L        +   +     +  L         +L    +     ++L  
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL---------ELRDTDLDTFHFSELST 244

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
              +S+ +    R + ++D +L     +  +L  +  L  L  S N+L  +        L
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF---QVMKLLNQISGLLELEFSRNQLKSVPDGIF-DRL 300

Query: 204 PNFTII 209
            +   I
Sbjct: 301 TSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNM-VLLNLESLTA 183
           ++   L  L L  N +  ++    F  L +L  LDLS N LS   +L+      L SLT 
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTF 128

Query: 184 LVLSSNKLSLLAGTTVNTNLPN 205
           L L  N    L  T++ ++L  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTK 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 23/118 (19%)

Query: 86  NLTKLNDLYLFGNDFSGKVP----DSLGDLLQLNYLTGEILVEI-----RKLTQLHILRL 136
            L +L  +    N  +  +     +    + ++  LT   L  +     + L  L  L L
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEI-LLTSNRLENVQHKMFKGLESLKTLML 112

Query: 137 AENQLEGSVPSSIFE-LRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALVLSSN 189
             N++   V +  F  L ++R L L DN ++    G  D       L SL+ L L +N
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD------TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDL-NMVLLNLESLTA 183
           +KL QL  +  + N++   +    FE    +  + L+ N L    ++ + +   LESL  
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE---NVQHKMFKGLESLKT 109

Query: 184 LVLSSNKLSLL 194
           L+L SN+++ +
Sbjct: 110 LMLRSNRITCV 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 16/170 (9%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L N+  + +G  N      +       L  L  L I+  K   +P       LN+L+L
Sbjct: 144 SGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DLPETLNELHL 200

Query: 96  FGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAENQLEGSVPSS 148
             N       + L    +L    L    +  I       L  L  L L  N+L   VP+ 
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

Query: 149 IFELRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALVLSSNKLSLL 194
           + +L+ L+ + L  NN++             +       + L +N +   
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEIRK--LTQLHILRLAE 138
               L  L  L L  N  S     +   L +L   Y++   LVEI     + L  LR+ +
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD 132

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           N++   VP  +F  LRN+  +++  N L  +G        L  L  L +S  KL+
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 20/170 (11%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL--GNLTKLNDLYLF 96
           L +L  L L     +     A + L  L  L     Y  +N L  +     + L +L + 
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKL-----YISKNHLVEIPPNLPSSLVELRIH 131

Query: 97  GNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
            N            L  +N +                    +L+ LR++E +L   +P  
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD 190

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198
           +     L  L L  N +         LL    L  L L  N++ ++   +
Sbjct: 191 LP--ETLNELHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGS 236

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 86  NLTKLNDLYLFGNDFSGKVPDSLGDLLQLN--YLTGEILVEI-----RKLTQLHILRLAE 138
              KL  + L  N  S   PD+   L  LN   L G  + E+       L  L +L L  
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           N++   +    F+ L NL  L L DN L            L ++  + L+ N
Sbjct: 114 NKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNM-VLLNLESLTA 183
               +L  + L+ NQ+   +    F+ LR+L +L L  N ++   +L   +   L SL  
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT---ELPKSLFEGLFSLQL 108

Query: 184 LVLSSNKLSLL 194
           L+L++NK++ L
Sbjct: 109 LLLNANKINCL 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 86  NLTKLNDLYLFGNDFS---GKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLA 137
           +  +L  L L   +          SL  L  L  LTG  +  +       L+ L  L   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 138 ENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           E  L  S+ +     L+ L+ L+++ N +  +  L     NL +L  L LSSNK+  +
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 38  KLANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLY 94
            L++L  L L   N   ++   A + LSSL  L+          L +  +G+L  L +L 
Sbjct: 74  SLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLV--AVETNLASLENFPIGHLKTLKELN 130

Query: 95  LFGNDF-SGKVPDSLGDLLQLNYLT----------GEILVEIRKLTQLHI-LRLAENQLE 142
           +  N   S K+P+   +L  L +L              L  + ++  L++ L L+ N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
             +    F+   L+ L L  N L    D   +   L SL  + L +N
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 126 RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSG--TGDLNMVLLNLESLT 182
               +L +L L+  +++ ++    ++ L +L  L L+ N +     G        L SL 
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQ 103

Query: 183 ALVLSSNKLSLLA 195
            LV     L+ L 
Sbjct: 104 KLVAVETNLASLE 116

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLNDLY 94
           A+ K L L     +S    A   L+ L  L     Y  +N L +L       L  L  L+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLL-----YLNDNKLQTLPAGIFKELKNLETLW 91

Query: 95  LFGNDFS---GKVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVP 146
           +  N        V D L +L +L  L    L  +       LT+L  L L  N+L+ S+P
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAEL-RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             +F+ L +L+ L L +N L            L  L  L L +N+L 
Sbjct: 150 KGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLK 194

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDL-LQLNYLTGEILVEIRKLTQLHILRLAE 138
              L +L+ L  L L  N      V  S+  L    N ++    V   +      + LA 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLAN 129

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198
           N++             ++ LDL  N +  T +   +  + ++L  L L  N +  + G  
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 199 VNTNL 203
           V   L
Sbjct: 189 VFAKL 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
           +  + L   +    +    +  L L+ N L     + +     L  L+LS N L  T DL
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76

Query: 172 NMVLLNLESLTALVLSSNKLSLLAGTT 198
                +L +L  L L++N +  L    
Sbjct: 77  E----SLSTLRTLDLNNNYVQELLVGP 99

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 11/162 (6%)

Query: 36  AEKLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLTKLNDLY 94
             +    K ++L                S +  L L L      NF     +   L  L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 95  LFGNDFSGKVPDS--LGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148
           L  N     V        L  L    N L   +  E +    +  + L  N+L   +  +
Sbjct: 176 LQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK 190
           +   +NL   DL  N     G L       + +  +   + K
Sbjct: 233 LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 23/172 (13%)

Query: 39  LANLKVLHLGQVNTASTVP-YASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
             +L+ + + Q +    +     +NL  L  +       K N L  +      NL  L  
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE----KANNLLYINPEAFQNLPNLQY 108

Query: 93  LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKL---------TQLHILRLAENQLEG 143
           L +                LQ   L  +  + I  +          +  IL L +N ++ 
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 144 SVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            + +S F    L  L+LSDNN L      N V         L +S  ++  L
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELP--NDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 39  LANLKVLHLGQVNTASTVP-YASANLSSLFSLLSLIAYCKENFLPSL--GNLTKLNDLYL 95
           L  L  + + + N    +   A  NL +L  LL  I+      LP +   +  +   L +
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL--ISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 96  FGNDFSGKVP----DSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVP 146
             N     +       L     + +L    + EI            +     N LE  +P
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELP 194

Query: 147 SSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK 190
           + +F        LD+S   +         L NL+ L A    + K
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVP----DSLGDLLQLNYLTGEILVEI-----RKLTQLHI 133
           +      L  + +  ND    +      +L  L ++       L+ I     + L  L  
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 134 LRLAENQLEGSVPSSIF-ELRNLRALDLSDNN 164
           L ++   ++  +P            LD+ DN 
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 79  NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAE 138
           + L  L     L +LY+        +                    +R L +L  L + +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRD----------------LRGLGELRNLTIVK 65

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193
           + L   V    F     L  L+LS N L     L+   +   SL  LVLS N L  
Sbjct: 66  SGLR-FVAPDAFHFTPRLSRLNLSFNALES---LSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 5e-07
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNL 178
           + L  +     L  L +   Q    +       L  LR L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFT 79

Query: 179 ESLTALVLSSNKLSLL-AGTTVNTNLPNFTIIG 210
             L+ L LS N L  L   T    +L    + G
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 29  SPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSL------LSLIAYCKENFLP 82
              L+ +   L  +K + +            S +L SL  L      +            
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK- 357

Query: 83  SLGNLTKLNDLYLFGNDFS--GKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHIL 134
             G    L  L L  N      K  + L  L  L  L         +    +   ++  L
Sbjct: 358 --GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            L+   +   V + I   + L  LD+S+NNL          L L  L  L +S NKL  L
Sbjct: 416 NLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD------SFSLFLPRLQELYISRNKLKTL 466

Query: 195 AGTTVNTNL 203
              ++   L
Sbjct: 467 PDASLFPVL 475

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCK-ENFLPSLGNLTKLNDLYLF 96
             +L+ L L Q N   ++      L +L +L SL I+         S     K+  L L 
Sbjct: 360 WPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418

Query: 97  GNDFSGKVPDSLGDLLQLNYLTGEILVEIRK-LTQLHILRLAENQLEGSVPSSIFELRNL 155
                  V   +   L++  ++   L      L +L  L ++ N+L+ ++P +      L
Sbjct: 419 STGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASL-FPVL 475

Query: 156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
             + +S N L    D   +   L SL  + L +N  
Sbjct: 476 LVMKISRNQLKSVPD--GIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 4/174 (2%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF 96
           + + ++  L L    +A  +   +  LSS+  L              L      + +   
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 97  GNDFSGKVPDSLGDLLQLNYLTGEIL-VEIRKLTQLHILRLAENQLEGSVPSSIFELRNL 155
               S    +S  +LL+L     E+  VE    T   +     ++ +        E   +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
           R L +    L    DL+ V   LE +  + + ++K+ L+  +    +L +   +
Sbjct: 289 RRLHIPQFYL--FYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-QHLKSLEFL 339

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 86  NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEI-RKLTQLHILRLAE 138
               +  L++        +      L ++  +T        +     + L  L  L L+E
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 139 NQLEGSV---PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           N +        +      +L+ L LS N+L        +LL L++LT+L +S N   
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
           L  N +T     ++R    L +L L  +++      + + L +L  LDLSDN+LS     
Sbjct: 33  LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS- 91

Query: 172 NMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG 210
                 L SL  L L  N    L  T++  NL N   + 
Sbjct: 92  -SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPS--LGNLTKLNDLYL 95
            ANL+VL L   +  +T+   +    SL SL  L ++    + L S   G L+ L  L L
Sbjct: 49  CANLQVLILKS-SRINTIEGDA--FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 96  FGNDFS----GKVPDSLGDLLQLNYLTGEILVEIRK-----LTQLHILRLAENQLEGSVP 146
            GN +       +  +L +L  L     E   EIR+     LT L+ L +    L     
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            S+  +R++  L L  +  +   ++      L S+  L L    L+
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEI--FADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 30  PSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL--GNL 87
                +   L NL  L + + NT   +P +      +  L           +  +     
Sbjct: 377 QKTGEILLTLKNLTSLDISR-NTFHPMPDSCQWPEKMRFL-----NLSSTGIRVVKTCIP 430

Query: 88  TKLNDLYLFGNDFSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEG 143
             L  L +  N+        L  L +L    N L    L +      L +++++ NQL+ 
Sbjct: 431 QTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLK- 486

Query: 144 SVPSSIFE-LRNLRALDLSDNNL 165
           SVP  IF+ L +L+ + L  N  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 13/179 (7%)

Query: 38  KLANLKVLHLGQVNTASTVPYASA--NLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDL 93
            L++LK L+L   N   T+   S   NL++L +L  +      + +       LT LN+L
Sbjct: 96  PLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTL-RIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 94  YLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
            +           SL  +       L L+     + +    L+ +  L L +  L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205
           S +        +       S   D +   L       L LS  +        +    P+
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 11/187 (5%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSL-LSLIAYCKENFLPSLGNLTKLNDLYL 95
             L +L+ L L   + +S        LSSL  L L    Y          NLT L  L +
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 96  FGNDFSGKVPDS----LGDL----LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPS 147
              +   ++       L  L    ++   L       ++ +  +H L L  ++    +  
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 148 SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFT 207
               L ++R L+L D NL+        L   E  + +   + + S+L   + N  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSP--LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 208 IIGSVHE 214
            I  + E
Sbjct: 249 YILELSE 255

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 23/166 (13%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGND 99
           A     +L +  + +        L+S+  ++          +  +  L  +  L L GN 
Sbjct: 19  AETIKANL-KKKSVTDAV-TQNELNSIDQII--ANNSDIKSVQGIQYLPNVRYLALGGNK 74

Query: 100 FSG-KVPDSLGDLLQLNYLTGEILVEI-----RKLTQLHILRLAENQLEGSVPSSIF-EL 152
                    L +L  L  LTG  L  +      KLT L  L L ENQL+ S+P  +F +L
Sbjct: 75  LHDISALKELTNLTYL-ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 153 RNLRALDLSDNNL----SGTGDLNMVLLNLESLTALVLSSNKLSLL 194
            NL  L+L+ N L     G  D       L +LT L LS N+L  L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFD------KLTNLTELDLSYNQLQSL 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 52/170 (30%), Positives = 67/170 (39%), Gaps = 33/170 (19%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
            L N++ L LG  N    +  A   L++L  L         N L SL       LT L +
Sbjct: 61  YLPNVRYLALGG-NKLHDIS-ALKELTNLTYL-----ILTGNQLQSLPNGVFDKLTNLKE 113

Query: 93  LYLFGNDFS---GKVPDSLGDLLQLNYLTGEILVEIR-----KLTQLHILRLAENQLEGS 144
           L L  N        V D L +L  L  L    L  +      KLT L  L L+ NQL+ S
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYL-NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-S 171

Query: 145 VPSSIFE-LRNLRALDLSDNNL----SGTGDLNMVLLNLESLTALVLSSN 189
           +P  +F+ L  L+ L L  N L     G  D       L SL  + L  N
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD------RLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 46/133 (34%), Positives = 55/133 (41%), Gaps = 24/133 (18%)

Query: 75  YCKENFLPSLG---NLTKLNDLYLFGNDFS---GKVPDSLGDLLQLNYLTGEILVEI--- 125
               N L  +     LT L  L L GN        V D L +L +L  L    L  +   
Sbjct: 69  ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV-LVENQLQSLPDG 127

Query: 126 --RKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNL----SGTGDLNMVLLNL 178
              KLT L  L LA NQL+ S+P  +F+ L NL  LDLS N L     G  D       L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD------KL 180

Query: 179 ESLTALVLSSNKL 191
             L  L L  N+L
Sbjct: 181 TQLKDLRLYQNQL 193

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 22/111 (19%)

Query: 93  LYLFGNDFSGKVP----DSLGDLLQLNYLTGEILVEIR-----KLTQLHILRLAENQLEG 143
           L L  N+            L  L++L  L    L  I        + +  L+L EN+++ 
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKL-ELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 144 SVPSSIFE-LRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALVLSSN 189
            + + +F  L  L+ L+L DN +S    G+ +      +L SLT+L L+SN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE------HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 127 KLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALV 185
           +L  L  L L  NQL   +  + FE   +++ L L +N +      N + L L  L  L 
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEIS--NKMFLGLHQLKTLN 108

Query: 186 LSSNKLS 192
           L  N++S
Sbjct: 109 LYDNQIS 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
           + L NL  L L   N  + +      L +L  +  L ++      + ++  L  +  L L
Sbjct: 60  QYLNNLIGLELKD-NQITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 96  FGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
                +   P  L  L  L  L         +  +  LT L  L +   Q+     + + 
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLA 170

Query: 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
            L  L  L   DN +S    L     +L +L  + L +N++S ++     +NL
Sbjct: 171 NLSKLTTLKADDNKISDISPLA----SLPNLIEVHLKNNQISDVSPLANTSNL 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQLNYLTGEI--LVEIRKLTQLHILRLA 137
           L  L NLTK+ +L L GN          L  +  L+  + +I  +  +  L+ L +L L 
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT 197
            NQ+  +  S +  L NL+ L + +  +S    L     NL  LT L    NK+S ++  
Sbjct: 138 LNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDNKISDISPL 191

Query: 198 TVNTNLPNFTI 208
               NL    +
Sbjct: 192 ASLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILR 135
             +  +L  +  L  FG   +    + +  L  L  L         L  ++ LT++  L 
Sbjct: 34  TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L+ N L     S+I  L++++ LDL+   ++    L      L +L  L L  N+++ ++
Sbjct: 92  LSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNIS 145

Query: 196 GTTVNTNL 203
                TNL
Sbjct: 146 PLAGLTNL 153

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYL 95
             L ++K L L      + V      L+ L +L  L +   +   +  L  LT L  L +
Sbjct: 104 AGLQSIKTLDLTS-TQITDVT----PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 96  FGNDFSGKVPDSLGDLLQLNYLT-----GEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150
                S      L +L +L  L         +  +  L  L  + L  NQ+  S  S + 
Sbjct: 159 GNAQVSD--LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI--SDVSPLA 214

Query: 151 ELRNLRALDLSDN---NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
              NL  + L++    N     + N+V+ N+    +    +       GT  + NL
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLPSLGNLTKLNDLYL 95
           +  A     +L + +    V       + L S+  +IA   +   +  +  L  +  L+L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 75

Query: 96  FGNDFSG-KVPDSLGDLLQLNYLTGEI--LVEIRKLTQLHILRLAENQLEGSVPSSIFEL 152
            GN  +  K   +L +L  L     ++  L  ++ L +L  L L  N +  S  + +  L
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHL 133

Query: 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
             L +L L +N ++   D+  VL  L  L  L L  N++S +      T L
Sbjct: 134 PQLESLYLGNNKIT---DIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 62  NLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG- 119
            +  L ++  L +   K   +  L NL  L  L+L  N        SL DL +L  L+  
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLE 120

Query: 120 ----EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL 175
                 +  +  L QL  L L  N++  +  + +  L  L  L L DN +S    L    
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLA--- 175

Query: 176 LNLESLTALVLSSNKLSLLAGTTVNTNL 203
             L  L  L LS N +S L       NL
Sbjct: 176 -GLTKLQNLYLSKNHISDLRALAGLKNL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILR 135
           + S     +     L     +  V     +L  ++ +       + +  I+ L  +  L 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 74

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L  N+L  +    +  L+NL  L L +N +     L     +L+ L +L L  N +S + 
Sbjct: 75  LNGNKL--TDIKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDIN 128

Query: 196 GTTVNTNL 203
           G      L
Sbjct: 129 GLVHLPQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 47/160 (29%), Positives = 58/160 (36%), Gaps = 39/160 (24%)

Query: 40  ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLNDLY 94
           A    L L   +  S        L+SL  L     Y   N L SL       LT L  L 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQL-----YLGGNKLQSLPNGVFNKLTSLTYLN 82

Query: 95  LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LR 153
           L  N     +P+ + D                KLTQL  L L  NQL+ S+P  +F+ L 
Sbjct: 83  LSTNQLQ-SLPNGVFD----------------KLTQLKELALNTNQLQ-SLPDGVFDKLT 124

Query: 154 NLRALDLSDNNL----SGTGDLNMVLLNLESLTALVLSSN 189
            L+ L L  N L     G  D       L SL  + L  N
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFD------RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNL----S 166
           L+ N L         +LT L  L L  N+L+ S+P+ +F +L +L  L+LS N L    +
Sbjct: 35  LETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

Query: 167 GTGDLNMVLLNLESLTALVLSSNKLSLL 194
           G  D       L  L  L L++N+L  L
Sbjct: 94  GVFD------KLTQLKELALNTNQLQSL 115

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
             +N+ + +     T        + +S    L         N L        G+LT+L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL-----DFSNNLLTDTVFENCGHLTELET 352

Query: 93  LYLFGNDFS-----GKVPDSLGDLLQL----NYLTGEILVEI-RKLTQLHILRLAENQLE 142
           L L  N         ++   +  L QL    N ++ +           L  L ++ N L 
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
            ++   +     ++ LDL  N +     +   ++ LE+L  L ++SN+L 
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK---SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGN------LTKLN 91
            L  L+ L L Q+N    +   +   + + SL  L     +N +              L 
Sbjct: 346 HLTELETLIL-QMNQLKELSKIAEMTTQMKSLQQL--DISQNSVSYDEKKGDCSWTKSLL 402

Query: 92  DLYLFGNDFSGKVPDSLGDLLQLNYLTG----EILVEIRKLTQLHILRLAENQLEGSVPS 147
            L +  N  +  +   L   +++  L       I  ++ KL  L  L +A NQL+ SVP 
Sbjct: 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPD 461

Query: 148 SIFE-LRNLRALDLSDNNL 165
            IF+ L +L+ + L  N  
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 20  SNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79
           +  ++  L           L  L +  +          Y     S++      ++  +  
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 80  FLPSLGNLTKLNDLYLFGN---DFSGKVPDSLGDL----LQLNYLT--GEILVEIRKLTQ 130
            +     ++    L    N   D   +    L +L    LQ+N L    +I     ++  
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 131 LHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNL-ESLTALVLSS 188
           L  L +++N +            ++L +L++S N L+     + +   L   +  L L S
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-----DTIFRCLPPRIKVLDLHS 430

Query: 189 NKLSLL 194
           NK+  +
Sbjct: 431 NKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 7/151 (4%)

Query: 65  SLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGK---VPDSLGDL----LQLNYL 117
           S+ ++         +F  S  +L  L+   +  + F      + +   ++      ++  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN 177
               ++   K++    L  + N L  +V  +   L  L  L L  N L     +  +   
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 178 LESLTALVLSSNKLSLLAGTTVNTNLPNFTI 208
           ++SL  L +S N +S        +   +   
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 23/166 (13%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG-------NLTKL 90
           K++    L         TV     +L+ L +L       + N L  L         +  L
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETL-----ILQMNQLKELSKIAEMTTQMKSL 376

Query: 91  NDLYLFGNDFSGKVP----DSLGDLLQLNYLTGEILVEI--RKLT-QLHILRLAENQLEG 143
             L +  N  S             LL LN ++  IL +   R L  ++ +L L  N+++ 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLN-MSSNILTDTIFRCLPPRIKVLDLHSNKIK- 434

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           S+P  + +L  L+ L+++ N L    D   +   L SL  + L +N
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGD 170
           +  NY++     +I  L++L IL ++ N+++  +  S+F+  + L  LDLS N L     
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV---- 82

Query: 171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG 210
             +      +L  L LS N    L       N+     +G
Sbjct: 83  -KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL--TGEILVEI--RKLTQLHILRLAE 138
            + +L+KL  L +  N              +L YL  +   LV+I       L  L L+ 
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99

Query: 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT 197
           N  +       F  +  L+ L LS  +L  +  L +  LN+  +  ++  +         
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 198 TVNTNLPNFTII 209
             + N  +  I+
Sbjct: 160 LQDFNTESLHIV 171

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 86  NLTKLNDLYLFGNDF----SGKVPDSLGDLLQLNYLTGEILVEIR-----KLTQLHILRL 136
           +L  L +LYL  N       G V DSL  L  L  L    L  +      +L  L  L +
Sbjct: 62  SLINLKELYLGSNQLGALPVG-VFDSLTQLTVL-DLGTNQLTVLPSAVFDRLVHLKELFM 119

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
             N+L   +P  I  L +L  L L  N L            L SLT   L  N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNL----S 166
           L  N +T         L  L  L L  NQL  ++P  +F  L  L  LDL  N L    S
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

Query: 167 GTGDLNMVLLNLESLTALVLSSNKL-SLLAGTTVNTNL 203
              D       L  L  L +  NKL  L  G    T+L
Sbjct: 106 AVFD------RLVHLKELFMCCNKLTELPRGIERLTHL 137

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-----GNLTKLND 92
             A + +  L   +T         + SS   L        +N            L +L  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL-----NFTQNVFTDSVFQGCSTLKRLQT 381

Query: 93  LYLFGNDFS--GKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLE 142
           L L  N      KV     ++  L  L        +            + +L L+ N L 
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
           GSV   +     ++ LDL +N +     +   + +L++L  L ++SN+L
Sbjct: 442 GSVFRCL--PPKVKVLDLHNNRIM---SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 87  LTKLNDLYLFGND---FSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAEN 139
             ++N   L  +D        P S      L    N  T  +      L +L  L L  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 140 QLEGSVPSSIFELRNLRALDLSDNNLSG--TGDLNMVLLNLESLTALVLSSNKLS 192
            L+ +        +N+ +L+  D +L+   +   +      ES+  L LSSN L+
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGD 170
           L  N ++   + +I  L++L +LRL+ N++  S+   +F   ++L  LD+S N L     
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ---- 113

Query: 171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG 210
            N+    + SL  L LS N   +L       NL   T +G
Sbjct: 114 -NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 29/169 (17%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSL-------GNLTKL 90
             ++   L+  Q     +V    + L  L +L       + N L +         N++ L
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL-----ILQRNGLKNFFKVALMTKNMSSL 405

Query: 91  NDLYLFGNDFSGKVPDSLGDL--------LQLNYLTGEILVEIRKLT-QLHILRLAENQL 141
             L +  N  +    D             L  N LTG +    R L  ++ +L L  N++
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLDLHNNRI 462

Query: 142 EGSVPSSIFELRNLRALDLSDNNLSGTGDLNM-VLLNLESLTALVLSSN 189
             S+P  +  L+ L+ L+++ N L     +   V   L SL  + L  N
Sbjct: 463 M-SIPKDVTHLQALQELNVASNQLK---SVPDGVFDRLTSLQYIWLHDN 507

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 20/109 (18%)

Query: 93  LYLFGNDFSGKVPDSLGDLLQLNYLTGEI--LVEI-----RKLTQLHILRLAENQLEGSV 145
           LYL GN F+  VP  L +   L  +      +  +       +TQL  L L+ N+L   +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 146 PSSIFE-LRNLRALDLSDNNLS----GTGDLNMVLLNLESLTALVLSSN 189
           P   F+ L++LR L L  N++S    G  +      +L +L+ L + +N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFN------DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNLS---- 166
           L  N  T      +     L ++ L+ N++  ++ +  F  +  L  L LS N L     
Sbjct: 38  LDGNQFTLVPKE-LSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 167 GTGDLNMVLLNLESLTALVLSSNKLS 192
            T D       L+SL  L L  N +S
Sbjct: 96  RTFD------GLKSLRLLSLHGNDIS 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 21/171 (12%)

Query: 32  LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLG-----N 86
             +L+  L  + +L+  ++   + +        +L SL  +     ++ +  +      N
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
           L KL       +       +    L   +           +   L  L + + + +  V 
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKD-----------RFPNLKWLGIVDAEEQNVVV 269

Query: 147 SSIFE---LRNLRALDLSDNNLSGTG--DLNMVLLNLESLTALVLSSNKLS 192
               E   L  L  +D+S   L+  G   L   +  ++ L  + +  N LS
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 29/108 (26%)

Query: 87  LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146
           LT+L  L L  N     +PD + D                KLT+L IL L EN+L+ S+P
Sbjct: 51  LTQLTKLSLSQNQIQ-SLPDGVFD----------------KLTKLTILYLHENKLQ-SLP 92

Query: 147 SSIFE-LRNLRALDLSDNNL----SGTGDLNMVLLNLESLTALVLSSN 189
           + +F+ L  L+ L L  N L     G  D       L SL  + L +N
Sbjct: 93  NGVFDKLTQLKELALDTNQLKSVPDGIFD------RLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 127 KLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNL----SGTGDLNMVLLNLESL 181
           KLTQL  L L++NQ++ S+P  +F +L  L  L L +N L    +G  D       L  L
Sbjct: 50  KLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFD------KLTQL 102

Query: 182 TALVLSSNKL 191
             L L +N+L
Sbjct: 103 KELALDTNQL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDL---LQLNYLTGEILVEIR---KLTQLHILR 135
               N  +  +L L G      V ++LG           +   + ++     L +L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 70

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           +  N++          L +L  L L++N+L   GDL+  L +L+SLT L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-PLASLKSLTYLCILRN 123

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 19/171 (11%)

Query: 39  LANLKVLHLGQVNTASTVP-YASANLSSLFSLLSLIAYCKENFLPS--LGNLTKLNDLYL 95
           L N+  +++    T   +  ++  NLS + + + +       ++    L  L  L  L +
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 96  FGNDFSGKVPD-----SLGDLLQLNYLTGEILVEI-----RKLT-QLHILRLAENQLEGS 144
           F        PD     S      L       +  I     + L  +   L+L  N    S
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170

Query: 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLES-LTALVLSSNKLSLL 194
           V    F    L A+ L+ N      D +     + S  + L +S   ++ L
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTSVTAL 220

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 12/68 (17%)

Query: 127 KLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNL----SGTGDLNMVLLNLESL 181
           +LTQL  L L  NQL   +P+ +F+ L  L  L L+DN L     G  D      NL+SL
Sbjct: 52  RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD------NLKSL 104

Query: 182 TALVLSSN 189
           T + L +N
Sbjct: 105 THIWLLNN 112

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 62  NLSSLFSLLSLIAYCKENFLPSL--GNLTKLNDLYLFGNDFSGKVPDSLGDL--LQLNYL 117
           +++ L  L      C  N L  L    L+KL  L+    D           L   Q    
Sbjct: 228 DVTPLTQLTYF--DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285

Query: 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN 177
                +++   TQL++L      +       + +   L  L L++  L+   +L+  + +
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT---ELD--VSH 337

Query: 178 LESLTALVLSSNKLSLLAGTTVNTNLPN 205
              L +L   +  +   +       L N
Sbjct: 338 NTKLKSLSCVNAHIQDFSSVGKIPALNN 365

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 62  NLSSLFSLLSLIAYCKENFLPSL--GNLTKLNDLYLFGNDFSGKVPDSLGDL--LQLNYL 117
           +++ L  L  L   C  N L  L       L  L    N  +         L  L  +  
Sbjct: 101 DVTPLTKLTYL--NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN 177
                +++   TQL  L  + N++       + + + L  L+   NN++      + L  
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-----KLDLNQ 210

Query: 178 LESLTALVLSSNKLS 192
              LT L  SSNKL+
Sbjct: 211 NIQLTFLDCSSNKLT 225

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 127 KLTQLHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNL----SGTGDLNMVLLNLESL 181
            L  L  L    N+L  ++P+ +F+ L  L  LDL+DN+L     G  D      NL+SL
Sbjct: 55  HLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD------NLKSL 107

Query: 182 TALVLSSN 189
           T + L +N
Sbjct: 108 THIYLYNN 115

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 34/168 (20%), Positives = 47/168 (27%), Gaps = 22/168 (13%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSL-------LSLIAYCKENFLPSLGNLTKLN 91
              LKVL + Q ++ +          +L +L       L                L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 92  DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEG 143
                    SG         +QL       N L            +QL+ L L+   L+ 
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266

Query: 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
            VP  +     L  LDLS N L            L  +  L L  N  
Sbjct: 267 QVPKGLP--AKLSVLDLSYNRLDRNPSP----DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDL-------LQLNYLTGEILVEIR------K 127
              +  ++ L +L L   + +G  P  L +        L L  ++               
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 128 LTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALV 185
              L +L +A+          +     L  LDLSDN   G   L   +  L   +L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 186 LSSNKLSLLAGT 197
           L +  +   +G 
Sbjct: 208 LRNAGMETPSGV 219

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 32/172 (18%), Positives = 49/172 (28%), Gaps = 15/172 (8%)

Query: 25  TLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL--IAYCKENFLP 82
            +  +     L     +L +L+L  V+ A+   + +     L   L +  IA        
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 83  --SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ 140
              +     L+ L L  N   G     L   L               L  L +       
Sbjct: 166 CEQVRVFPALSTLDLSDNPELG--ERGLISALCPLKFP--------TLQVLALRNAGMET 215

Query: 141 LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
             G   +       L+ LDLS N+L               L +L LS   L 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSFTGLK 266

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 86  NLTKLNDLYLFGNDFS-GKVPDSLGDLLQLN--YLTGEILVEI---RKLTQLHILRLAEN 139
             + + +L L  +  + GK+     +  +L         L  I    KL +L  L L++N
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           ++ G +     +  NL  L+LS N +     +   L  LE+L +L L + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLFNC 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 37  EKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLPSLGNLTKLNDLYL 95
             LAN    +LG+ +    V         L  + +          L  +   T L +L+L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVS-----QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70

Query: 96  FGNDFSGKVPDSLGDLLQLN--YLTGEILVEIRKL--TQLHILRLAENQLEGSVPSSIFE 151
             N  S      L DL +L    +    L  +  +    L  L L  N+L      S+  
Sbjct: 71  SHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL--RDTDSLIH 126

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203
           L+NL  L + +N L     L      L  L  L L  N+++   G T    +
Sbjct: 127 LKNLEILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGGLTRLKKV 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG-----EILVEIRKLTQLHILR 135
           +     L       L     +  V     +L  +    G     + L  ++  T L  L 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELH 69

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195
           L+ NQ+  S  S + +L  L  L ++ N L      N+  +    L+ L L +N+L    
Sbjct: 70  LSHNQI--SDLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTD 122

Query: 196 GTTVNTNL 203
                 NL
Sbjct: 123 SLIHLKNL 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 86  NLTKLNDLYLFGNDFS-GKVPDSLGDLLQLN--YLTGEILVEI---RKLTQLHILRLAEN 139
               + +L L     + GK+     + + L    L    L+ +    KL +L  L L+EN
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           ++ G +     +L NL  L+LS N L     L   L  LE L +L L + 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE-PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 110 DLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169
            L       G+I     +   L  L L    L     S++ +L  L+ L+LS+N + G  
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGG- 86

Query: 170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209
            L+M+   L +LT L LS NKL  ++       L     +
Sbjct: 87  -LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 78  ENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDL--LQLNYLTGEILVEIRKL----TQL 131
           E    +L  L     L L  N+   K+  SL  +  L++  L   ++ +I  L      L
Sbjct: 38  EKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAVADTL 95

Query: 132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
             L ++ NQ+     S I +L NLR L +S+N ++  G+++  L  L+ L  L+L+ N L
Sbjct: 96  EELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEID-KLAALDKLEDLLLAGNPL 152

Query: 192 S 192
            
Sbjct: 153 Y 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.22

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.9e-28  Score=221.46  Aligned_cols=210  Identities=21%  Similarity=0.193  Sum_probs=147.8

Q ss_pred             cCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-   78 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-   78 (228)
                      ++|++....+..++.+++|+++++++|.    +|..+..+++|++|++++|.+.+..|..+..+++|++|+  +++|.+ 
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~--L~~N~l~  527 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK--LSNNSFS  527 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE--CCSSCCE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE--CCCCccc
Confidence            3444444444445555555555555554    344555555555555555555555555555555555555  555555 


Q ss_pred             CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc--------------------------------------------
Q 041723           79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ--------------------------------------------  113 (228)
Q Consensus        79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~--------------------------------------------  113 (228)
                      +.+| .++.+++|+.|++++|.++|.+|..++....                                            
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence            3455 5555555555555555555555554433211                                            


Q ss_pred             ---------ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEE
Q 041723          114 ---------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL  184 (228)
Q Consensus       114 ---------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L  184 (228)
                               .+.+.+..|..++.+++|+.|++++|.+++.+|..++.++.|+.|++++|.+++  .+|..++.+++|++|
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--SIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEE
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--CCChHHhCCCCCCEE
Confidence                     022334455566677889999999999999999999999999999999999998  899999999999999


Q ss_pred             EccCCccccccCccccCCCCCccccccccccccc
Q 041723          185 VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +|++|++++.+|.. +.+++.|++|++++|++++
T Consensus       686 dLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          686 DLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             ECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEE
T ss_pred             ECCCCcccCcCChH-HhCCCCCCEEECcCCcccc
Confidence            99999999999999 9999999999999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.1e-27  Score=216.56  Aligned_cols=217  Identities=21%  Similarity=0.247  Sum_probs=192.0

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.+....+..++.+++|+++++++|.    +|+.+..+++|++|++++|.+.+..|..+..+++|++|+  +++|.
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~--L~~N~  477 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI--LDFND  477 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE--CCSSC
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE--ecCCc
Confidence            456777777788889999999999999996    578899999999999999999999999999999999999  99999


Q ss_pred             C-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 E-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      + +.+| .+..+++|++|++++|.+++.+|..++.++.       .|.+.+.+|..++.+++|+.|++++|.+.+.+|..
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            9 5778 8899999999999999999999999888877       45566889999999999999999999988776654


Q ss_pred             c----------------------------------------------------------------------ccCCCCCEE
Q 041723          149 I----------------------------------------------------------------------FELRNLRAL  158 (228)
Q Consensus       149 ~----------------------------------------------------------------------~~l~~L~~L  158 (228)
                      +                                                                      +.+++|+.|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence            3                                                                      335779999


Q ss_pred             EccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccc
Q 041723          159 DLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC  223 (228)
Q Consensus       159 ~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  223 (228)
                      ++++|.+++  .+|..++.++.|+.|+|++|.+++.+|.. ++++++|++|++++|++++.....
T Consensus       638 dLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          638 DMSYNMLSG--YIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             ECCSSCCBS--CCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ECcCCcccc--cCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChH
Confidence            999999998  89999999999999999999999999999 999999999999999999755443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.4e-28  Score=200.53  Aligned_cols=209  Identities=23%  Similarity=0.286  Sum_probs=156.9

Q ss_pred             CcCCcccc--cchhhhcccccccccccCC-CC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh
Q 041723            3 HHGTRKKK--IATAAYGTASNAMKTLLQS-PS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY   75 (228)
Q Consensus         3 ~~~~~~~~--~~~~~~~~l~~l~~l~l~~-~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~   75 (228)
                      ++++.+..  ..+..++.+++|++|++++ |.    +|+.+.++++|++|++++|.+++..|..+..+++|++|+  +++
T Consensus        57 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~--Ls~  134 (313)
T 1ogq_A           57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD--FSY  134 (313)
T ss_dssp             EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE--CCS
T ss_pred             CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe--CCC
Confidence            45666665  5667888888999998884 54    677888888999999988888877888888888888888  888


Q ss_pred             cCC-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccc-c-------ccccccccchhhhcCCCCCEEeccCCcccccC
Q 041723           76 CKE-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLL-Q-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSV  145 (228)
Q Consensus        76 ~~~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  145 (228)
                      |.+ +.+| .+..+++|++|++++|.+++.+|..++.++ .       .+.+.+..|..++.++ |+.|++++|.+.+..
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~  213 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA  213 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred             CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence            888 4777 788888888999988888878888887776 3       3445566777777666 777777777777666


Q ss_pred             ccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          146 PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       146 ~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      |..+..+++|+.|++++|.+++  .+|. +..+++|++|++++|.+++..|.. +..+++|++|++++|++++
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAF--DLGK-VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECC--BGGG-CCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred             CHHHhcCCCCCEEECCCCceee--ecCc-ccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccc
Confidence            6667777777777777777764  3333 566677777777777777666666 6667777777777777663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2e-27  Score=193.65  Aligned_cols=208  Identities=21%  Similarity=0.267  Sum_probs=184.4

Q ss_pred             CcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CC
Q 041723            6 TRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NF   80 (228)
Q Consensus         6 ~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~   80 (228)
                      |.+....+..++.+++|++|++++|.    +|+.+..+++|++|++++|.+.+..|..+..+++|++|+  +++|.+ +.
T Consensus        87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~--L~~N~l~~~  164 (313)
T 1ogq_A           87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT--FDGNRISGA  164 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE--CCSSCCEEE
T ss_pred             CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE--CcCCcccCc
Confidence            77777788899999999999999997    578899999999999999999989999999999999999  999999 48


Q ss_pred             Cc-cccCCC-CCcEEEeeCCcCCCCCCChhhcccc------ccccccccchhhhcCCCCCEEeccCCcccccCccccccC
Q 041723           81 LP-SLGNLT-KLNDLYLFGNDFSGKVPDSLGDLLQ------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL  152 (228)
Q Consensus        81 ~p-~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  152 (228)
                      +| .+..++ +|+.|++++|.+++.+|..++.++-      .+.+.+..|..+..+++|+.|++++|.+.+..|. +..+
T Consensus       165 ~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l  243 (313)
T 1ogq_A          165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS  243 (313)
T ss_dssp             CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred             CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence            88 888888 9999999999999888988877651      3445667888899999999999999999865554 8889


Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccc-cccCc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET-LASSH  220 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~  220 (228)
                      ++|++|++++|.+++  .+|.++..+++|++|++++|++++.+|..  ..+++|+.+++++|+ +.+.|
T Consensus       244 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          244 KNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEESTT
T ss_pred             CCCCEEECcCCcccC--cCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccCCC
Confidence            999999999999998  88999999999999999999999887764  789999999988887 44433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.7e-26  Score=189.33  Aligned_cols=208  Identities=22%  Similarity=0.193  Sum_probs=131.8

Q ss_pred             CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-   78 (228)
                      ++++.+..++ ..++.+++|++|++++|.   +|+.+..+++|++|++++|.+. .+|..+..+++|++|+  +++|.+ 
T Consensus        88 L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~--L~~n~~~  163 (328)
T 4fcg_A           88 LRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS--IRACPEL  163 (328)
T ss_dssp             EESSCCSSCC-SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE--EEEETTC
T ss_pred             ccCCCchhcC-hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE--CCCCCCc
Confidence            3455555443 335556677777777665   4566666777777777777666 4566666777777777  777655 


Q ss_pred             CCCc-ccc---------CCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCccc
Q 041723           79 NFLP-SLG---------NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLE  142 (228)
Q Consensus        79 ~~~p-~~~---------~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~  142 (228)
                      +.+| .+.         .+++|++|++++|.++ .+|..++.++.+..+.      ..+|..++.+++|+.|++++|.+.
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence            5555 443         2667777777777766 6666666655533221      134555666667777777776666


Q ss_pred             ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +.+|..++.+++|+.|++++|.+.+  .+|..+..+++|++|++++|.+.+.+|.. +.++++++.+++..+.+..
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGSCC
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHHHH
Confidence            6666666666777777777766665  66666666677777777776666666666 6667777766666555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.2e-26  Score=195.72  Aligned_cols=215  Identities=23%  Similarity=0.224  Sum_probs=172.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|+++.+.+..++.+++|++|++++|.+    +..+..+++|++|++++|.++...+..+..+++|++|+  +++|.
T Consensus        70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~N~  147 (440)
T 3zyj_A           70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW--LRNNP  147 (440)
T ss_dssp             ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE--CCSCC
T ss_pred             EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee--CCCCc
Confidence            4678888888888899999999999999873    46788889999999999988877777888899999999  99999


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      +..++  .+..+++|+.|++++|...+.++. .+..++++..+.      ..+| .+..+++|+.|++++|.+.+..|..
T Consensus       148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred             ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhh
Confidence            87666  688889999999988544334443 455565543332      2333 4677888999999999998777888


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      +..+++|+.|++++|.+++  ..+..+.++++|+.|+|++|++++..+.. +..+++|+.|+     +.++++.|+|++
T Consensus       227 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~Np~~CdC~l  297 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDL-FTPLHHLERIH-----LHHNPWNCNCDI  297 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTT-TSSCTTCCEEE-----CCSSCEECSSTT
T ss_pred             hccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhH-hccccCCCEEE-----cCCCCccCCCCc
Confidence            8899999999999999986  56677888999999999999999877777 88899999999     566677888875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.3e-26  Score=195.22  Aligned_cols=215  Identities=21%  Similarity=0.178  Sum_probs=165.1

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|+++.+.+..|+.+++|++|++++|.+    +..+..+++|++|++++|.++...+..+..+++|++|+  +++|.
T Consensus        81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~N~  158 (452)
T 3zyi_A           81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW--LRNNP  158 (452)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE--CCSCC
T ss_pred             ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE--CCCCC
Confidence            4667888888888888888888888888873    45777888888888888888776667788888888888  88888


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      +..+|  .+..+++|+.|++++|...+.++. .+..++++..+.      ..+| .+..+++|+.|++++|.+.+..|..
T Consensus       159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~  237 (452)
T 3zyi_A          159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGS  237 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred             cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCccc
Confidence            86666  677888888888887543334443 355555533321      1223 4667788899999999988777788


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      +..+++|+.|++++|.+++  ..+..+.++++|+.|+|++|++++.++.. +..+++|+.|+     +.++++.|+|++
T Consensus       238 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~Np~~CdC~~  308 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELH-----LHHNPWNCDCDI  308 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTS-STTCTTCCEEE-----CCSSCEECSTTT
T ss_pred             ccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHH-hccccCCCEEE-----ccCCCcCCCCCc
Confidence            8889999999999999886  56777888899999999999998877776 88889999998     455577888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=3.4e-26  Score=185.54  Aligned_cols=210  Identities=18%  Similarity=0.157  Sum_probs=178.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh------HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL------ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY   75 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~   75 (228)
                      .+++++++.+....++.+++|++|++++|.+      +..+..+++|++|++++|.+.. ++..+..+++|++|+  +++
T Consensus        34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~--l~~  110 (306)
T 2z66_A           34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD--FQH  110 (306)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE--CTT
T ss_pred             ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE--CCC
Confidence            4678889988888899999999999999974      5778889999999999998874 677789999999999  999


Q ss_pred             cCCCCCc---cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------ccc-ccchhhhcCCCCCEEeccCCccccc
Q 041723           76 CKENFLP---SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTG-EILVEIRKLTQLHILRLAENQLEGS  144 (228)
Q Consensus        76 ~~~~~~p---~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~-~~~~~~~~l~~L~~L~ls~n~l~~~  144 (228)
                      |.+..++   .+..+++|++|++++|.+.+..+..+..++.+..       +.+ ..|..+..+++|+.|++++|.+.+.
T Consensus       111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  190 (306)
T ss_dssp             SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence            9995554   6888999999999999998777777777666433       334 4678888999999999999999977


Q ss_pred             CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC-Ccccccccccccc
Q 041723          145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP-NFTIIGSVHETLA  217 (228)
Q Consensus       145 ~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~  217 (228)
                      .|..+..+++|+.|++++|.+++  ..+..+..+++|++|++++|++++..+.. +..++ +|++|++++|.++
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred             CHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence            68889999999999999999986  44557888999999999999999988888 88885 8999997766654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5.4e-26  Score=186.44  Aligned_cols=197  Identities=19%  Similarity=0.219  Sum_probs=174.1

Q ss_pred             cccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEE
Q 041723           19 ASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLY   94 (228)
Q Consensus        19 l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~   94 (228)
                      ..+++.++++++.   +|+.+.++++|++|++++|.+. .+|..+..+++|++|+  +++|.+..+| .+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~--Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT--LARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE--EESCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE--CCCCccccCcHHHhcCcCCCEEE
Confidence            3688999999997   7888999999999999999998 7889999999999999  9999999899 999999999999


Q ss_pred             eeCCcCCCCCCChhhc---------cccccccc------cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEE
Q 041723           95 LFGNDFSGKVPDSLGD---------LLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALD  159 (228)
Q Consensus        95 l~~n~l~~~~p~~~~~---------l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  159 (228)
                      +++|.+.+.+|..++.         ++.+..+.      ..+|..++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence            9999888899987654         55533321      278888999999999999999999 5777899999999999


Q ss_pred             ccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          160 LSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       160 l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      +++|.+.+  .+|..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+....
T Consensus       236 Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          236 LRGCTALR--NYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CcCCcchh--hhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccH
Confidence            99999887  88999999999999999999999999988 89999999999999887664433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=6.9e-26  Score=182.01  Aligned_cols=197  Identities=21%  Similarity=0.177  Sum_probs=143.7

Q ss_pred             ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-CCCC-c-cccCCCCCcE
Q 041723           20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK-ENFL-P-SLGNLTKLND   92 (228)
Q Consensus        20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~-~~~~-p-~~~~l~~L~~   92 (228)
                      ++++++++++|.+    ++.+..+++|++|++++|.+++..+..+..+++|++|+  +++|. +..+ | .+..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD--LSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe--CCCCCCccccCHHHhcCCcCCCE
Confidence            4666777776662    24566667777777777766665566666777777777  77775 5544 3 5666777777


Q ss_pred             EEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL  165 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  165 (228)
                      |++++|.+++..|..+..++++.       .+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            77777776654455555555432       23333344577889999999999999855555688999999999999999


Q ss_pred             ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      ++  ..|..+..+++|++|++++|.+++..+.. +..+++|+++++++|.     +.|+|+
T Consensus       190 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~c~~~  242 (285)
T 1ozn_A          190 AH--VHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP-----WVCDCR  242 (285)
T ss_dssp             CE--ECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCEEECCSSC-----EECSGG
T ss_pred             cc--cCHhHccCcccccEeeCCCCcCCcCCHHH-cccCcccCEEeccCCC-----ccCCCC
Confidence            87  66888999999999999999999887777 8899999999966654     456654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.9e-25  Score=190.20  Aligned_cols=97  Identities=27%  Similarity=0.289  Sum_probs=70.4

Q ss_pred             chhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccC
Q 041723          122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNT  201 (228)
Q Consensus       122 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  201 (228)
                      |..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++  ..|..+.++++|++|++++|.+++..+.. +.
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~  368 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS--IDSRMFENLDKLEVLDLSYNHIRALGDQS-FL  368 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECGGGGTTCTTCCEEECCSSCCCEECTTT-TT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC--cChhHhcCcccCCEEECCCCcccccChhh-cc
Confidence            3445566677777777777775556667777777777777777765  45666777788888888888887776766 77


Q ss_pred             CCCCcccccccccccccCcc
Q 041723          202 NLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       202 ~l~~L~~l~l~~n~~~~~~~  221 (228)
                      .+++|++|++++|++++.+.
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCT
T ss_pred             ccccccEEECCCCccccCCH
Confidence            78888888888888877554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=2.8e-25  Score=189.18  Aligned_cols=99  Identities=23%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc
Q 041723          116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA  195 (228)
Q Consensus       116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  195 (228)
                      .+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++  ..|..+..+++|++|++++|++++.+
T Consensus       310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc--cChhhccccccccEEECCCCccccCC
Confidence            3445667788999999999999999987778889999999999999999986  66888999999999999999999887


Q ss_pred             CccccCCCCCcccccccccccc
Q 041723          196 GTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       196 ~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      +.. +..+++|++|++++|+++
T Consensus       388 ~~~-~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          388 DGI-FDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TTT-TTTCTTCCEEECCSSCBC
T ss_pred             HhH-hccCCcccEEEccCCCcc
Confidence            777 889999999996666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=5.8e-25  Score=193.71  Aligned_cols=98  Identities=18%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---h-HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---L-ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|+++.+.+.+|+++++|++|++++|.   + |++|..+++|++|++++|++++..+.+|.++++|++|+  +++|.
T Consensus        58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~--Ls~N~  135 (635)
T 4g8a_A           58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV--AVETN  135 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE--CTTSC
T ss_pred             EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE--CCCCc
Confidence            455666666666666666666666666665   2 23455566666666666665554445555555555555  55555


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCC
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~  101 (228)
                      +..+|  .++++++|++|++++|.++
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCChhhhhcCcccCeeccccCccc
Confidence            54444  3455555555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.3e-25  Score=191.03  Aligned_cols=215  Identities=20%  Similarity=0.232  Sum_probs=125.0

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.+..+.+..++.+++|++|++++|.   +| ..+..+++|++|++++|.+.+..+..+..+++|++|+  +++|.
T Consensus        62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--l~~n~  139 (477)
T 2id5_A           62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE--VGDND  139 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--ECCTT
T ss_pred             ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE--CCCCc
Confidence            456677777777777777777777777776   33 2456677777777777777666666666666666666  66666


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc------------------------cccc-------ccccc--
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ------------------------LNYL-------TGEIL--  122 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------------------------~~~l-------~~~~~--  122 (228)
                      +..++  .+..+++|+.|++++|.+++..+..+..++.                        +..+       .+.+|  
T Consensus       140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred             cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence            64332  5566666666666666665322222332222                        1111       11111  


Q ss_pred             ----------------------hhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCC
Q 041723          123 ----------------------VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLES  180 (228)
Q Consensus       123 ----------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~  180 (228)
                                            ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++  ..|..+..+++
T Consensus       220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  297 (477)
T 2id5_A          220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNY  297 (477)
T ss_dssp             TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE--ECTTTBTTCTT
T ss_pred             cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce--ECHHHhcCccc
Confidence                                  234455556666666665554444445566666666666666654  44555666666


Q ss_pred             CCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          181 LTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       181 L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      |+.|++++|.+++..+.. +..+++|++|++++|     ++.|+|+
T Consensus       298 L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N-----~l~c~c~  337 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESV-FHSVGNLETLILDSN-----PLACDCR  337 (477)
T ss_dssp             CCEEECCSSCCSCCCGGG-BSCGGGCCEEECCSS-----CEECSGG
T ss_pred             CCEEECCCCcCceeCHhH-cCCCcccCEEEccCC-----CccCccc
Confidence            666666666666655555 566666666664444     4455554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.3e-25  Score=184.16  Aligned_cols=212  Identities=19%  Similarity=0.117  Sum_probs=168.9

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.++.+.+..++.+++|++|++++|.+    |+.+..+++|++|++++|.+++..+..+..+++|++|+  +++|.
T Consensus        58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--L~~n~  135 (353)
T 2z80_A           58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN--LLGNP  135 (353)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE--CTTCC
T ss_pred             ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE--CCCCC
Confidence            5678888888888899999999999999873    45788899999999999999876666788999999999  99999


Q ss_pred             CCCCcc---ccCCCCCcEEEeeCCc-CCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCc
Q 041723           78 ENFLPS---LGNLTKLNDLYLFGND-FSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVP  146 (228)
Q Consensus        78 ~~~~p~---~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  146 (228)
                      +..+|.   +..+++|++|++++|. +++..+..++.++.+       +.+.+..|..++.+++|++|++++|.+. .+|
T Consensus       136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~  214 (353)
T 2z80_A          136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL  214 (353)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THH
T ss_pred             CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cch
Confidence            977763   7789999999999984 654445667666663       3445666888888899999999999987 445


Q ss_pred             cc-cccCCCCCEEEccCCccccCC-----------------------------CcchhhhcCCCCCEEEccCCccccccC
Q 041723          147 SS-IFELRNLRALDLSDNNLSGTG-----------------------------DLNMVLLNLESLTALVLSSNKLSLLAG  196 (228)
Q Consensus       147 ~~-~~~l~~L~~L~l~~n~~~~~~-----------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~~  196 (228)
                      .. +..+++|+.|++++|.+++..                             .+|.++..+++|++|++++|+++..++
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred             hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence            43 456889999999999887521                             145678889999999999999996655


Q ss_pred             ccccCCCCCcccccccccccc
Q 041723          197 TTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       197 ~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      .. +.++++|+++++++|++.
T Consensus       295 ~~-~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          295 GI-FDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TT-TTTCTTCCEEECCSSCBC
T ss_pred             HH-HhcCCCCCEEEeeCCCcc
Confidence            55 689999999997766543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.3e-24  Score=173.74  Aligned_cols=195  Identities=19%  Similarity=0.199  Sum_probs=119.6

Q ss_pred             cccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEE
Q 041723           21 NAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLY   94 (228)
Q Consensus        21 ~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~   94 (228)
                      +++++++++|.+   + ..+..+++|++|++++|.+.+..+..+..+++|++|+  +++|.+..++  .+..+++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI--LTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE--CTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEE--CCCCccCccChhhhcCCccccEEE
Confidence            344555555442   1 2444455555555555544443444444555555555  5555553332  344455555555


Q ss_pred             eeCCcCCCCCCChhhcccccc-------cccc-ccchhhhcCCCCCEEeccCCcccccCccccccCCCCC----EEEccC
Q 041723           95 LFGNDFSGKVPDSLGDLLQLN-------YLTG-EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR----ALDLSD  162 (228)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~~~-------~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~----~L~l~~  162 (228)
                      +++|.+.+..+..++.++.+.       .+.+ .+|..++.+++|++|++++|.+.+..+..+..+.+|+    .+++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            555554432222333333321       1112 2456678889999999999999866666777777776    899999


Q ss_pred             CccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          163 NNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       163 n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      |.+++   ++.......+|+.|++++|.+++.++.. +..+++|+++++++|.     +.|+|+
T Consensus       187 n~l~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~c~c~  241 (276)
T 2z62_A          187 NPMNF---IQPGAFKEIRLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP  241 (276)
T ss_dssp             SCCCE---ECTTSSCSCCEEEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSC-----BCCCTT
T ss_pred             Ccccc---cCccccCCCcccEEECCCCceeecCHhH-hcccccccEEEccCCc-----ccccCC
Confidence            99984   4444445568999999999999887776 8899999999966554     556664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=185.46  Aligned_cols=214  Identities=23%  Similarity=0.177  Sum_probs=167.3

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|+++.+.+..++.+++|++|++++|.+    |..+.++++|++|++++|.+....+..|..+++|++|+  +++|.
T Consensus        38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~  115 (477)
T 2id5_A           38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD--ISENK  115 (477)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE--CTTSC
T ss_pred             ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE--CCCCc
Confidence            5678899999899999999999999999973    67899999999999999999877777789999999999  99999


Q ss_pred             CCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           78 ENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        78 ~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      +..+ | .+..+++|+.|++++|.+++..+..+..++++.       .+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  195 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS  195 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence            9554 4 788999999999999999866677777766643       334444456777888888888888877554545


Q ss_pred             cccCCCCCEEEcc------------------------CCccccCCCcc-hhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723          149 IFELRNLRALDLS------------------------DNNLSGTGDLN-MVLLNLESLTALVLSSNKLSLLAGTTVNTNL  203 (228)
Q Consensus       149 ~~~l~~L~~L~l~------------------------~n~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  203 (228)
                      +..+++|+.|+++                        +|.++   .+| ..+..+++|+.|++++|.+++..+.. +..+
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l  271 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT---AVPYLAVRHLVYLRFLNLSYNPISTIEGSM-LHEL  271 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC---SCCHHHHTTCTTCCEEECCSSCCCEECTTS-CTTC
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc---ccCHHHhcCccccCeeECCCCcCCccChhh-cccc
Confidence            5555555555554                        45555   334 45777888888888888888777777 7888


Q ss_pred             CCcccccccccccccCcc
Q 041723          204 PNFTIIGSVHETLASSHI  221 (228)
Q Consensus       204 ~~L~~l~l~~n~~~~~~~  221 (228)
                      ++|++|++++|++++.+.
T Consensus       272 ~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TTCCEEECCSSCCSEECT
T ss_pred             ccCCEEECCCCccceECH
Confidence            888888888888876543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=3.2e-25  Score=196.62  Aligned_cols=178  Identities=21%  Similarity=0.303  Sum_probs=117.8

Q ss_pred             hHHHHhccCCCCeeecCCccCCCC-----------------cchhcc--CCcchHHHHHhhhhcCC-CCCc-cccCCCCC
Q 041723           32 LANLAEKLANLKVLHLGQVNTAST-----------------VPYASA--NLSSLFSLLSLIAYCKE-NFLP-SLGNLTKL   90 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L   90 (228)
                      +|+.++++++|++|++++|.+++.                 +|..++  .+++|++|+  +++|.+ +.+| .++++++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~--L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE--VYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--EECCTTCSSCCTTTTTCSSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE--ecCCcCCccChHHHhcCCCC
Confidence            455677777777777777777664                 677766  777777777  777776 6666 77777777


Q ss_pred             cEEEeeCCc-CCC-CCCChhhcc------ccc-------cccccccch--hhhcCCCCCEEeccCCcccccCccccccCC
Q 041723           91 NDLYLFGND-FSG-KVPDSLGDL------LQL-------NYLTGEILV--EIRKLTQLHILRLAENQLEGSVPSSIFELR  153 (228)
Q Consensus        91 ~~L~l~~n~-l~~-~~p~~~~~l------~~~-------~~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  153 (228)
                      ++|++++|. ++| .+|..++.+      +++       +.+. .+|.  .++.+++|++|++++|.+.+.+| .++.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            777777776 766 567666655      342       2333 5666  67777777777777777776666 666666


Q ss_pred             CCCEEEccCCccccCCCcchhhhcCCC-CCEEEccCCccccccCccccCCCC--Cccccccccccccc
Q 041723          154 NLRALDLSDNNLSGTGDLNMVLLNLES-LTALVLSSNKLSLLAGTTVNTNLP--NFTIIGSVHETLAS  218 (228)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~l~l~~n~~~~  218 (228)
                      +|+.|++++|.++   .+|..+..+++ |++|++++|.++ .+|.. +..++  +|++|++++|++++
T Consensus       354 ~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          354 KLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             EESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTT
T ss_pred             CCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCC
Confidence            7777777777666   45666666666 777777777666 33443 43332  56666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8.2e-24  Score=168.77  Aligned_cols=179  Identities=23%  Similarity=0.240  Sum_probs=124.1

Q ss_pred             cccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEE
Q 041723           21 NAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLY   94 (228)
Q Consensus        21 ~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~   94 (228)
                      ++++|++++|.+   + ..+..+++|++|++++|.++...+..+..+++|++|+  +++|.+..+|  .+..+++|+.|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW--VTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE--CCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE--CCCCcCCcCCHhHcccccCCCEEE
Confidence            455555555542   2 2455555555555555555544444445555555555  5555554444  445555555555


Q ss_pred             eeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchh
Q 041723           95 LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV  174 (228)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~  174 (228)
                      +++|.++                 +..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  ..+..
T Consensus       116 l~~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~  176 (270)
T 2o6q_A          116 LDRNQLK-----------------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VPEGA  176 (270)
T ss_dssp             CCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTT
T ss_pred             CCCCccC-----------------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eChhH
Confidence            5555555                 2223346788999999999999996555568899999999999999985  44556


Q ss_pred             hhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          175 LLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       175 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      +..+++|++|++++|++++.++.. +..+++|+.+++++     +++.|+|+
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~-----N~~~c~c~  222 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGA-FDSLEKLKMLQLQE-----NPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS-----SCBCCSSS
T ss_pred             hccCCCcCEEECCCCcCCcCCHHH-hccccCCCEEEecC-----CCeeCCCc
Confidence            888999999999999999887777 88999999999554     46677774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=6.3e-24  Score=173.94  Aligned_cols=207  Identities=15%  Similarity=0.155  Sum_probs=120.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|+++.+.+..++.+++|++|++++|.+    |+.+..+++|++|++++|.++. +|..+.  ++|++|+  +++|.
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~--l~~n~  132 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR--VHENE  132 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEE--CCSSC
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEE--CCCCc
Confidence            4567777777777778888888888887762    5667777777777777776653 232221  3444444  44444


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCC--CCCChhhcccc----------------------------ccccccccchhh
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSG--KVPDSLGDLLQ----------------------------LNYLTGEILVEI  125 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~----------------------------~~~l~~~~~~~~  125 (228)
                      +..++  .+..+++|++|++++|.+..  ..+..+..++.                            .+.+.+..|..+
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~  212 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL  212 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh
Confidence            43333  33444444444444444421  22223333222                            223344445566


Q ss_pred             hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC---
Q 041723          126 RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN---  202 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---  202 (228)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++   .+|.++..+++|++|++++|++++..+.. ++.   
T Consensus       213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~i~~~~~~~-f~~~~~  288 (330)
T 1xku_A          213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSND-FCPPGY  288 (330)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCCCCCTTS-SSCSSC
T ss_pred             cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCcCCccChhh-cCCccc
Confidence            66666777777777666544455666667777777777666   46666666667777777777776655544 432   


Q ss_pred             ---CCCcccccccccccc
Q 041723          203 ---LPNFTIIGSVHETLA  217 (228)
Q Consensus       203 ---l~~L~~l~l~~n~~~  217 (228)
                         .+.++.+++++|.+.
T Consensus       289 ~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CTTSCCCSEEECCSSSSC
T ss_pred             ccccccccceEeecCccc
Confidence               255666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=3.5e-24  Score=179.29  Aligned_cols=109  Identities=16%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++.++.++...++.+++|+++++++|.+    +..+..+++|++|++++|.+.+..|..+..+++|++|+  +++|.+
T Consensus        52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l  129 (390)
T 3o6n_A           52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV--LERNDL  129 (390)
T ss_dssp             EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred             ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE--CCCCcc
Confidence            345555666666666666666666666652    23566666666666666666665566666666666666  666666


Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ  113 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  113 (228)
                      ..+|  .+..+++|++|++++|.+++..+..++.+++
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            5555  2456666666666666665444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.9e-24  Score=188.34  Aligned_cols=210  Identities=19%  Similarity=0.174  Sum_probs=119.7

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++.+..+++..++.+++|++|++++|.+    |..+..+++|++|++++|.+.+..|..++.+++|++|+  +++|.+
T Consensus        58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l  135 (597)
T 3oja_B           58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV--LERNDL  135 (597)
T ss_dssp             ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred             eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE--eeCCCC
Confidence            345555666666666667777777776652    33666667777777777766666666666677777776  777766


Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc-------ccc-----------------------------
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGE-----------------------------  120 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~-----------------------------  120 (228)
                      ..+|  .+..+++|++|++++|.+++..|..++.++.+..+       .+.                             
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~  215 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE  215 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred             CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence            5555  34666667777777766665555555554442211       110                             


Q ss_pred             ------------------------------cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCC
Q 041723          121 ------------------------------ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD  170 (228)
Q Consensus       121 ------------------------------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  170 (228)
                                                    -+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++   
T Consensus       216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---  292 (597)
T 3oja_B          216 LDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---  292 (597)
T ss_dssp             EECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE---
T ss_pred             eeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC---
Confidence                                          11234455556666666666655555555566666666666665552   


Q ss_pred             cchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      +|..+..+++|+.|+|++|.+++. |.. +..+++|++|++++|.+++.
T Consensus       293 l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          293 LNLYGQPIPTLKVLDLSHNHLLHV-ERN-QPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             EECSSSCCTTCCEEECCSSCCCCC-GGG-HHHHTTCSEEECCSSCCCCC
T ss_pred             CCcccccCCCCcEEECCCCCCCcc-Ccc-cccCCCCCEEECCCCCCCCc
Confidence            344444455555555555555532 333 34455555555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.4e-24  Score=171.67  Aligned_cols=197  Identities=23%  Similarity=0.198  Sum_probs=118.1

Q ss_pred             cccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723           17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL   93 (228)
Q Consensus        17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L   93 (228)
                      +.+++++.+++.++.   +|..+.  +.+++|++++|.+.+..+..+..+++|++|+  +++|.+..++....+++|++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN--LDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE--CTTSCCCEEECCSCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE--CCCCccCcccCCCCCCcCCEE
Confidence            334444444444443   232222  3445555555554444444445555555555  555555444422444455555


Q ss_pred             EeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      ++++|.++ .+|..+..++.+       |.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            55555544 344433333321       1222223345677888999999999998655566788899999999999988


Q ss_pred             cCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      +  ..+..+..+++|++|++++|+++.. |.. +...++|+.++     +.++++.|.|.+
T Consensus       162 ~--l~~~~~~~l~~L~~L~L~~N~l~~i-p~~-~~~~~~L~~l~-----L~~Np~~C~c~~  213 (290)
T 1p9a_G          162 E--LPAGLLNGLENLDTLLLQENSLYTI-PKG-FFGSHLLPFAF-----LHGNPWLCNCEI  213 (290)
T ss_dssp             C--CCTTTTTTCTTCCEEECCSSCCCCC-CTT-TTTTCCCSEEE-----CCSCCBCCSGGG
T ss_pred             c--cCHHHhcCcCCCCEEECCCCcCCcc-Chh-hcccccCCeEE-----eCCCCccCcCcc
Confidence            4  3334567889999999999999854 555 56677888888     555667788864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=7.6e-24  Score=173.67  Aligned_cols=207  Identities=19%  Similarity=0.202  Sum_probs=130.3

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|.+..+.+..++.+++|++|++++|.    .|+.+..+++|++|++++|.++. +|..+.  ++|++|+  +++|.
T Consensus        60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~--l~~n~  134 (332)
T 2ft3_A           60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR--IHDNR  134 (332)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE--CCSSC
T ss_pred             ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE--CCCCc
Confidence            456777777777788888888888888886    25677788888888888887764 443333  6777777  77777


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCC--CCCChhhcc--cc-------------------------ccccccccchhhh
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSG--KVPDSLGDL--LQ-------------------------LNYLTGEILVEIR  126 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l--~~-------------------------~~~l~~~~~~~~~  126 (228)
                      +..+|  .+..+++|+.|++++|.++.  ..+..+..+  ..                         .+.+.+..+..+.
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~  214 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL  214 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence            76665  46777888888888777742  334333322  00                         1222333344555


Q ss_pred             cCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC----
Q 041723          127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN----  202 (228)
Q Consensus       127 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----  202 (228)
                      .+++|+.|++++|.+.+..+..+..+++|+.|++++|.++   .+|..+..+++|++|++++|++++..+.. ++.    
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~  290 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNITKVGVND-FCPVGFG  290 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC---BCCTTGGGCTTCCEEECCSSCCCBCCTTS-SSCSSCC
T ss_pred             CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe---ecChhhhcCccCCEEECCCCCCCccChhH-ccccccc
Confidence            5666666666666666444445666666666666666665   45555666666666666666666554444 333    


Q ss_pred             --CCCcccccccccccc
Q 041723          203 --LPNFTIIGSVHETLA  217 (228)
Q Consensus       203 --l~~L~~l~l~~n~~~  217 (228)
                        .+.++.+++++|.+.
T Consensus       291 ~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSSCCBSEEECCSSSSC
T ss_pred             cccccccceEeecCccc
Confidence              244566666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=2.4e-24  Score=189.56  Aligned_cols=210  Identities=20%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hH-HHHhccCCCCeeecCCccCCCCc--chhccCCcchHHHHHhhh
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LA-NLAEKLANLKVLHLGQVNTASTV--PYASANLSSLFSLLSLIA   74 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~~~l~   74 (228)
                      ++++|++..+.+..++.+++|+++++++|.    +| ..+..+++|++|++++|.+.+..  +..+..+++|++|+  ++
T Consensus       307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~--l~  384 (606)
T 3t6q_A          307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN--LS  384 (606)
T ss_dssp             ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE--CC
T ss_pred             ECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE--CC
Confidence            456677777767777777777777777774    22 23666666777777666665543  45566666666666  66


Q ss_pred             hcCCC-CCc-cccCCCCCcEEEeeCCcCCCCCCCh-hhccccc-------cccccccchhhhcCCCCCEEeccCCccccc
Q 041723           75 YCKEN-FLP-SLGNLTKLNDLYLFGNDFSGKVPDS-LGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS  144 (228)
Q Consensus        75 ~~~~~-~~p-~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  144 (228)
                      +|.+. ..| .+..+++|+.|++++|.+++..+.. +..++.+       +.+.+..|..++.+++|++|++++|.+.+.
T Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            66663 223 5556666666666666655433322 4444332       223334444555555555555555555431


Q ss_pred             ---CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          145 ---VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       145 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                         .+..+..+++|+.|++++|.+++  ..|..+..+++|++|++++|++++..|.. +.+++.| ++++++|+++
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCC
T ss_pred             ccccchhhccCCCccEEECCCCccCc--cChhhhccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCccc
Confidence               12334555555555555555554  33445555555555555555555555544 5555555 5555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=6.1e-24  Score=187.02  Aligned_cols=218  Identities=24%  Similarity=0.175  Sum_probs=138.0

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      .++++++..+.+..++.+++|+++++++|.   +|+.+..+++|++|++++|.+.+..|..+..+++|++|+  +++|.+
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~~  337 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGNTK  337 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE--CCSCSS
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE--CCCCCc
Confidence            345677777777778888888888888876   566777778888888888877766666777777777777  777766


Q ss_pred             -CCCc--cccCCCCCcEEEeeCCcCCCCC--CChhhcccccc-------ccccccchh----------------------
Q 041723           79 -NFLP--SLGNLTKLNDLYLFGNDFSGKV--PDSLGDLLQLN-------YLTGEILVE----------------------  124 (228)
Q Consensus        79 -~~~p--~~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~~~-------~l~~~~~~~----------------------  124 (228)
                       ..+|  .+..+++|++|++++|.+++..  +..++.++.+.       .+.+..|..                      
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence             3454  4666666666666666665322  33444433311       122222333                      


Q ss_pred             ---hhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC-CcchhhhcCCCCCEEEccCCccccccCcccc
Q 041723          125 ---IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG-DLNMVLLNLESLTALVLSSNKLSLLAGTTVN  200 (228)
Q Consensus       125 ---~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  200 (228)
                         ++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.. ..+..+..+++|++|++++|.+++..|.. +
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~  496 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-F  496 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-T
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-h
Confidence               445555566666666555444555566666666666666665310 11234666677777777777777666666 7


Q ss_pred             CCCCCcccccccccccccCccc
Q 041723          201 TNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       201 ~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ..+++|++|++++|++++.+..
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGG
T ss_pred             ccccCCCEEECCCCccCcCChh
Confidence            7777777777777777765443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=2.2e-23  Score=170.70  Aligned_cols=206  Identities=20%  Similarity=0.186  Sum_probs=149.2

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh---H----------------------HHHhccCCCCeeecCCccCCC--
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL---A----------------------NLAEKLANLKVLHLGQVNTAS--   54 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~----------------------~~~~~l~~L~~L~l~~n~~~~--   54 (228)
                      ++++|++..+.+..++.+++|++|++++|.+   |                      ..+..+++|++|++++|.+..  
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A           82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             ECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence            4677888888888888888888888888752   2                      235556666666666665542  


Q ss_pred             CcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhh
Q 041723           55 TVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIR  126 (228)
Q Consensus        55 ~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~  126 (228)
                      ..+..+..+++|++|+  +++|.+..+| .+.  ++|+.|++++|.+++..|..+..++.+       +.+.+..+..+.
T Consensus       162 ~~~~~~~~l~~L~~L~--l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          162 IENGAFQGMKKLSYIR--IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             BCTTGGGGCTTCCEEE--CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cChhhccCCCCcCEEE--CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            3455566666666666  6666666666 332  677777777777775556677766663       344555666788


Q ss_pred             cCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh------cCCCCCEEEccCCcccc--ccCcc
Q 041723          127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL------NLESLTALVLSSNKLSL--LAGTT  198 (228)
Q Consensus       127 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~------~l~~L~~L~L~~n~l~~--~~~~~  198 (228)
                      .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++  ..+..+.      ....++.+++++|++..  ..|..
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~  314 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST  314 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCccc
Confidence            9999999999999998 788889999999999999999995  3333342      24789999999999964  44566


Q ss_pred             ccCCCCCcccccccccc
Q 041723          199 VNTNLPNFTIIGSVHET  215 (228)
Q Consensus       199 ~~~~l~~L~~l~l~~n~  215 (228)
                       +..+..++.+++++|+
T Consensus       315 -f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          315 -FRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -GTTCCCGGGEEC----
T ss_pred             -cccccceeEEEecccC
Confidence             8889999999999885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=4.3e-24  Score=173.08  Aligned_cols=210  Identities=21%  Similarity=0.205  Sum_probs=173.6

Q ss_pred             cCCcccccchhhhcccccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcC
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +++.++.++.. +  .++++++++++|.   +|+ .+..+++|++|++++|.+...  .+..+..+++|++|+  +++|.
T Consensus        15 ~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--Ls~n~   89 (306)
T 2z66_A           15 NSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD--LSFNG   89 (306)
T ss_dssp             CSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE--CCSCS
T ss_pred             CCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE--CCCCc
Confidence            34455555542 2  2589999999997   454 478999999999999998743  367788899999999  99999


Q ss_pred             CCCCc-cccCCCCCcEEEeeCCcCCCCCC-Chhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccc-cCcc
Q 041723           78 ENFLP-SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEG-SVPS  147 (228)
Q Consensus        78 ~~~~p-~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~  147 (228)
                      +..+| .+..+++|++|++++|.+++..+ ..+..++.+.       .+.+..+..+..+++|++|++++|.+.+ ..|.
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            98888 88999999999999999984333 4566666643       3445667778899999999999999985 4688


Q ss_pred             ccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          148 SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       148 ~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      .+..+++|+.|++++|.+++  ..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++...
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSS
T ss_pred             HHhhCcCCCEEECCCCCcCC--cCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCH
Confidence            89999999999999999996  56788999999999999999999887777 8899999999999999976543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=4.1e-23  Score=184.10  Aligned_cols=213  Identities=21%  Similarity=0.189  Sum_probs=153.9

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|.++.+.+..++.+++|++|++++|.    .|+.+.++++|++|++++|.+.+..+.+|..+++|++|+  +++|.
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--L~~n~  108 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH--LMSNS  108 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSC
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE--CCCCc
Confidence            567888888888889999999999999887    367888999999999999988876666889999999999  99999


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------cccccchhhh--cCCCCCEEeccCCcccccCc
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTGEILVEIR--KLTQLHILRLAENQLEGSVP  146 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~  146 (228)
                      +..++  .++.+++|++|++++|.+++..|..++.++++..       +.+..+..+.  .+++|+.|++++|.+.+..|
T Consensus       109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            96665  7888999999999999988777776766666333       3344444443  34677888888887775555


Q ss_pred             cccccC---------------------------CCCCEEEccCCccccCCCcchhhhcCCC--CCEEEccCCccccccCc
Q 041723          147 SSIFEL---------------------------RNLRALDLSDNNLSGTGDLNMVLLNLES--LTALVLSSNKLSLLAGT  197 (228)
Q Consensus       147 ~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~p~~~~~l~~--L~~L~L~~n~l~~~~~~  197 (228)
                      ..+..+                           ++|+.|++++|.+++  ..|.++..+..  |++|++++|.+++..+.
T Consensus       189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~  266 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGND  266 (680)
T ss_dssp             TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred             hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc--cChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence            444433                           345555555665554  44555555543  77777777776666555


Q ss_pred             cccCCCCCcccccccccccccC
Q 041723          198 TVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       198 ~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      . +.++++|++|++++|.++..
T Consensus       267 ~-~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          267 S-FAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             T-TTTCTTCCEEECCSCCBSEE
T ss_pred             c-ccCcccccEeeCCCCccCcc
Confidence            5 66667777777776666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=2.1e-23  Score=185.96  Aligned_cols=213  Identities=23%  Similarity=0.212  Sum_probs=162.4

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh----H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +++|++..+.+..++.+++|+++++++|.+    | ..+..+++|++|++++|.+.+..+..+..+++|+.|+  +++|.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~--l~~n~  465 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM--LRRVA  465 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE--CTTSC
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch--hcccc
Confidence            466778888888888888999999998873    3 5778888999999999888877788888888899888  88888


Q ss_pred             C---CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------cccc----cc----hhhhcCCCCCEEeccC
Q 041723           78 E---NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTGE----IL----VEIRKLTQLHILRLAE  138 (228)
Q Consensus        78 ~---~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~~----~~----~~~~~l~~L~~L~ls~  138 (228)
                      +   +.+| .+..+++|++|++++|.+++..+..++.++.+..       +.+.    +|    ..++.+++|+.|++++
T Consensus       466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  545 (680)
T 1ziw_A          466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES  545 (680)
T ss_dssp             CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred             ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence            7   4566 7888899999999999988555555666665332       2221    11    2366778888888888


Q ss_pred             CcccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccC-CCCCccccccccccc
Q 041723          139 NQLEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNT-NLPNFTIIGSVHETL  216 (228)
Q Consensus       139 n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~l~l~~n~~  216 (228)
                      |.+. .+| ..|..+++|+.|++++|.+++  ..+..+..+++|+.|++++|++++..+.. +. .+++|++++     +
T Consensus       546 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~l~-----l  616 (680)
T 1ziw_A          546 NGFD-EIPVEVFKDLFELKIIDLGLNNLNT--LPASVFNNQVSLKSLNLQKNLITSVEKKV-FGPAFRNLTELD-----M  616 (680)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECTTSCCCBCCHHH-HHHHHTTCSEEE-----C
T ss_pred             CCCC-CCCHHHcccccCcceeECCCCCCCc--CCHhHhCCCCCCCEEECCCCcCCccChhH-hcccccccCEEE-----c
Confidence            8888 444 457888888888888888884  33445677888888888888888776665 55 677888888     5


Q ss_pred             ccCccccccC
Q 041723          217 ASSHIFCTTK  226 (228)
Q Consensus       217 ~~~~~~~~~~  226 (228)
                      .++++.|+|+
T Consensus       617 ~~N~~~c~c~  626 (680)
T 1ziw_A          617 RFNPFDCTCE  626 (680)
T ss_dssp             TTCCCCBCCC
T ss_pred             cCCCcccCCc
Confidence            6677888887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.4e-24  Score=192.45  Aligned_cols=199  Identities=18%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             chhhhc--ccccccccccCCCC----hHHHHhccCCCCeeecCCcc-CCC-CcchhccCC------cchHHHHHhhhhcC
Q 041723           12 ATAAYG--TASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVN-TAS-TVPYASANL------SSLFSLLSLIAYCK   77 (228)
Q Consensus        12 ~~~~~~--~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~~~l~~~~   77 (228)
                      .|..++  .+++|++|++++|.    +|+.+.++++|++|++++|+ +++ .+|..+..+      ++|++|+  +++|.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~--L~~n~  316 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY--IGYNN  316 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE--CCSSC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE--CCCCc
Confidence            455666  77777777777775    56777777777777777776 666 667666665      7777777  77777


Q ss_pred             CCCCcc---ccCCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCC-CCEEeccCCcccccCcc
Q 041723           78 ENFLPS---LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQ-LHILRLAENQLEGSVPS  147 (228)
Q Consensus        78 ~~~~p~---~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~  147 (228)
                      +..+|.   ++.+++|++|++++|.++|.+| .++.++++..+.      ..+|..++.+++ |++|++++|.+. .+|.
T Consensus       317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            766664   6677777777777777776676 666555533221      155666666666 777777766666 5555


Q ss_pred             ccccCC--CCCEEEccCCccccCCCcchhhh-------cCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          148 SIFELR--NLRALDLSDNNLSGTGDLNMVLL-------NLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       148 ~~~~l~--~L~~L~l~~n~~~~~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      .+..+.  +|+.|++++|.+++  .+|..+.       .+.+|++|++++|.+++.++.. +..+++|++|++++|+++
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTT--TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH-HHTTCCCSEEECCSSCCS
T ss_pred             hhhhcccCccCEEECcCCcCCC--cchhhhcccccccccCCCCCEEECcCCccCcCCHHH-HccCCCCCEEECCCCCCC
Confidence            544433  55566666555554  3444343       3344555555555554332222 333444444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=175.41  Aligned_cols=196  Identities=22%  Similarity=0.233  Sum_probs=169.8

Q ss_pred             ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEE
Q 041723           20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDL   93 (228)
Q Consensus        20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L   93 (228)
                      .+++.|++++|.+    ++.+..+++|++|++++|.+....+..|.++++|++|+  +++|.+..+|  .+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE--LFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE--CCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE--CCCCcCCeeCHhHhhccccCcee
Confidence            4789999999983    46899999999999999999988889999999999999  9999998777  68999999999


Q ss_pred             EeeCCcCCCCCCChhhcccccccc--------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL  165 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  165 (228)
                      ++++|.+++..+..+..++++..+        ....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence            999999985444566666664433        2233346788999999999999998 566 488999999999999999


Q ss_pred             ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++  ..|..+.++++|+.|++++|.+++..+.. +.++++|++|++++|+++..+..
T Consensus       220 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          220 SA--IRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             CE--ECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTT
T ss_pred             Cc--cChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChh
Confidence            97  66888999999999999999999988888 99999999999999999986654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=6.9e-24  Score=192.88  Aligned_cols=177  Identities=18%  Similarity=0.237  Sum_probs=135.0

Q ss_pred             hHHHHhccCCCCeeecCCccCCC-----------------Ccchhcc--CCcchHHHHHhhhhcCC-CCCc-cccCCCCC
Q 041723           32 LANLAEKLANLKVLHLGQVNTAS-----------------TVPYASA--NLSSLFSLLSLIAYCKE-NFLP-SLGNLTKL   90 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L   90 (228)
                      +|+.++++++|++|++++|.+++                 .+|..++  .+++|++|+  +++|.+ +.+| .++++++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~--Ls~N~l~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE--LYNCPNMTQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--EESCTTCCSCCGGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE--CcCCCCCccChHHHhCCCCC
Confidence            56677788888888888888877                 2777766  888888888  888887 7777 78888888


Q ss_pred             cEEEeeCCc-CCC-CCCChhhccc-------c-------ccccccccch--hhhcCCCCCEEeccCCcccccCccccccC
Q 041723           91 NDLYLFGND-FSG-KVPDSLGDLL-------Q-------LNYLTGEILV--EIRKLTQLHILRLAENQLEGSVPSSIFEL  152 (228)
Q Consensus        91 ~~L~l~~n~-l~~-~~p~~~~~l~-------~-------~~~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  152 (228)
                      +.|++++|. +++ .+|..++.++       +       .+.+. .+|.  .++.+++|+.|++++|.+. .+| .++.+
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence            888888887 776 6777777665       3       33344 6777  7888888888888888887 677 77888


Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCC-CCEEEccCCccccccCccccCCCCC--ccccccccccccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLES-LTALVLSSNKLSLLAGTTVNTNLPN--FTIIGSVHETLAS  218 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~--L~~l~l~~n~~~~  218 (228)
                      ++|+.|++++|.++   .+|..+..+++ |+.|++++|.++ .+|.. +..++.  |+.|++++|++++
T Consensus       595 ~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             SEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTT
T ss_pred             CcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCC
Confidence            88888888888887   57777777877 888888888887 44554 555433  7777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=5.5e-23  Score=165.03  Aligned_cols=192  Identities=19%  Similarity=0.132  Sum_probs=160.0

Q ss_pred             cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeC
Q 041723           23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFG   97 (228)
Q Consensus        23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~   97 (228)
                      +.++..++.   +|..+  .+++++|++++|.+.+..+..+..+++|++|+  +++|.+..+ | .+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW--LHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEE--CCCCccceeCHhhcCCccCCCEEeCCC
Confidence            345555554   45433  46999999999999987778899999999999  999999666 5 889999999999999


Q ss_pred             Cc-CCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723           98 ND-FSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG  169 (228)
Q Consensus        98 n~-l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  169 (228)
                      |. ++...|..+..++++.       .+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--  167 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--  167 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--
Confidence            97 7755577777776643       4455667778899999999999999996555668999999999999999985  


Q ss_pred             CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      ..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCH
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCH
Confidence            34446889999999999999999988888 9999999999999999998664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=6.4e-23  Score=171.62  Aligned_cols=210  Identities=20%  Similarity=0.185  Sum_probs=140.9

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .++++.+..+.+..++.+++|++|++++|.+    |..+..+++|++|++++|.+....+..+..+++|++|+  +++|.
T Consensus        75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--L~~n~  152 (390)
T 3o6n_A           75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS--MSNNN  152 (390)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSC
T ss_pred             ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE--CCCCc
Confidence            4678888888888899999999999999873    45688899999999999988865556678899999999  99999


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc------------------------------------------
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ------------------------------------------  113 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------------------------------------------  113 (228)
                      +..++  .+..+++|++|++++|.+++.-...+..+..                                          
T Consensus       153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~  232 (390)
T 3o6n_A          153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK  232 (390)
T ss_dssp             CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEE
T ss_pred             cCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEE
Confidence            86554  6888899999999998887421111111111                                          


Q ss_pred             --ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcc
Q 041723          114 --LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL  191 (228)
Q Consensus       114 --~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l  191 (228)
                        .+.+.+  +..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.++   .+|..+..+++|++|++++|++
T Consensus       233 l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC---EEECSSSCCTTCCEEECCSSCC
T ss_pred             CCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc---ccCcccCCCCCCCEEECCCCcc
Confidence              011111  134556667777777777776555666666677777777776666   3444445556666666666666


Q ss_pred             ccccCccccCCCCCcccccccccccccCc
Q 041723          192 SLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      ++. |.. +..+++|++|++++|++++.+
T Consensus       308 ~~~-~~~-~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          308 LHV-ERN-QPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CCC-GGG-HHHHTTCSEEECCSSCCCCCC
T ss_pred             eec-Ccc-ccccCcCCEEECCCCccceeC
Confidence            543 333 444555566666655555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=6.2e-23  Score=174.99  Aligned_cols=196  Identities=22%  Similarity=0.222  Sum_probs=169.4

Q ss_pred             ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEE
Q 041723           20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDL   93 (228)
Q Consensus        20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L   93 (228)
                      +++++|++++|.+    |+.+..+++|++|++++|.+.+..+..|.++++|++|+  +++|.+..+|  .+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE--LFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE--CCCCcCCccChhhhcccCCCCEE
Confidence            4899999999983    57899999999999999999988889999999999999  9999997777  68899999999


Q ss_pred             EeeCCcCCCCCCChhhcccccccc--------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL  165 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  165 (228)
                      ++++|.+++..+..+..++++..+        ....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence            999999984444566666664433        2223345788999999999999998 455 488999999999999999


Q ss_pred             ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++  ..|..+.++++|+.|++++|.+++..+.. +..+++|+.|++++|+++..+..
T Consensus       231 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          231 PE--IRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             SE--ECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cc--cCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChH
Confidence            97  66888999999999999999999988888 99999999999999999976643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.2e-23  Score=179.40  Aligned_cols=212  Identities=17%  Similarity=0.148  Sum_probs=146.0

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|++..+.+..++.+++|++|++++|.+    |+.+..+++|++||+++|.++. +|..  .+++|++|+  +++|.
T Consensus        27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~--L~~N~  101 (520)
T 2z7x_B           27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD--LSFNA  101 (520)
T ss_dssp             ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE--CCSSC
T ss_pred             ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe--ccCCc
Confidence            4677888888888888888888888888872    6778888888888888888874 5544  778888888  88888


Q ss_pred             CCC--Cc-cccCCCCCcEEEeeCCcCC-------------------------CCCCChhhccc-----------------
Q 041723           78 ENF--LP-SLGNLTKLNDLYLFGNDFS-------------------------GKVPDSLGDLL-----------------  112 (228)
Q Consensus        78 ~~~--~p-~~~~l~~L~~L~l~~n~l~-------------------------~~~p~~~~~l~-----------------  112 (228)
                      +..  +| .++.+++|++|++++|.++                         +..|..+..+.                 
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~  181 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI  181 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred             cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence            843  55 7777777777777777654                         22333333321                 


Q ss_pred             ------------------------------------------------------------------c-------cccccc
Q 041723          113 ------------------------------------------------------------------Q-------LNYLTG  119 (228)
Q Consensus       113 ------------------------------------------------------------------~-------~~~l~~  119 (228)
                                                                                        .       .+.+.+
T Consensus       182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  261 (520)
T 2z7x_B          182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG  261 (520)
T ss_dssp             CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred             hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence                                                                              0       011112


Q ss_pred             ccchhh-----------------------------------------------------hcCCCCCEEeccCCcccccCc
Q 041723          120 EILVEI-----------------------------------------------------RKLTQLHILRLAENQLEGSVP  146 (228)
Q Consensus       120 ~~~~~~-----------------------------------------------------~~l~~L~~L~ls~n~l~~~~~  146 (228)
                      .+|..+                                                     ..+++|++|++++|.+.+..|
T Consensus       262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~  341 (520)
T 2z7x_B          262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF  341 (520)
T ss_dssp             CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT
T ss_pred             ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh
Confidence            333322                                                     456677778888888776667


Q ss_pred             cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC-ccccCCCCCcccccccccccccC
Q 041723          147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       147 ~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      ..++.+++|+.|++++|.+++...+|..+..+++|++|++++|.+++.+| .. +..+++|++|++++|++++.
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILTDT  414 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCCGG
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCCcc
Confidence            77778888888888888877422345667778888888888888877333 33 66677777777777777543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=7.3e-23  Score=167.79  Aligned_cols=206  Identities=17%  Similarity=0.119  Sum_probs=152.1

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++|++..+.+..++.+++|++|++++|.   +|..+.  ++|++|++++|.+.+..+..+..+++|++|+  +++|.+
T Consensus        84 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~--l~~n~l  159 (332)
T 2ft3_A           84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE--MGGNPL  159 (332)
T ss_dssp             ECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE--CCSCCC
T ss_pred             ECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE--CCCCcc
Confidence            567888888888999999999999999987   344333  5777777777777665556666677666666  666666


Q ss_pred             C---CCc-cccCC--------------------CCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhc
Q 041723           79 N---FLP-SLGNL--------------------TKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRK  127 (228)
Q Consensus        79 ~---~~p-~~~~l--------------------~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~  127 (228)
                      .   ..+ .+..+                    ++|+.|++++|.+++..+..+..++.+       +.+.+..+..+..
T Consensus       160 ~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             BGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             ccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            2   222 33222                    567777888888875555667766663       3445666668899


Q ss_pred             CCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhc------CCCCCEEEccCCccc--cccCccc
Q 041723          128 LTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN------LESLTALVLSSNKLS--LLAGTTV  199 (228)
Q Consensus       128 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~------l~~L~~L~L~~n~l~--~~~~~~~  199 (228)
                      +++|+.|++++|.+. .+|..+..+++|+.|++++|.+++  ..+..+..      ...++.+++++|++.  +..+.. 
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~-  315 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT-  315 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB--CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG-
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc--cChhHccccccccccccccceEeecCcccccccCccc-
Confidence            999999999999999 788889999999999999999985  33333433      467899999999997  556666 


Q ss_pred             cCCCCCcccccccccc
Q 041723          200 NTNLPNFTIIGSVHET  215 (228)
Q Consensus       200 ~~~l~~L~~l~l~~n~  215 (228)
                      +..+++|+.+++++|+
T Consensus       316 ~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          316 FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GTTBCCSTTEEC----
T ss_pred             ccccchhhhhhccccc
Confidence            8899999999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=5.8e-23  Score=187.43  Aligned_cols=214  Identities=21%  Similarity=0.218  Sum_probs=121.6

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----h-HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----L-ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC   76 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~   76 (228)
                      ++++|.++.+.+..++.+++|++|++++|.    + |+++.++++|++|++++|.+.+..|..|..+++|++|+  +++|
T Consensus        30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~--Ls~n  107 (844)
T 3j0a_A           30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR--LYFC  107 (844)
T ss_dssp             EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE--CTTC
T ss_pred             ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee--CcCC
Confidence            455666776666666777777777776663    2 45566666666666666666665566666666666666  6666


Q ss_pred             CCC-CCc-c--ccCCCCCcEEEeeCCcCCCCCC-Chhhccccccc-------cccccchhh-------------------
Q 041723           77 KEN-FLP-S--LGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQLNY-------LTGEILVEI-------------------  125 (228)
Q Consensus        77 ~~~-~~p-~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~~~-------l~~~~~~~~-------------------  125 (228)
                      .+. .+| .  ++.+++|++|++++|.+++..+ ..++.++++..       +.+..+..+                   
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            662 233 2  5556666666666666553322 23444433111       111111111                   


Q ss_pred             -------hc--------------------------------------------------------------------CCC
Q 041723          126 -------RK--------------------------------------------------------------------LTQ  130 (228)
Q Consensus       126 -------~~--------------------------------------------------------------------l~~  130 (228)
                             +.                                                                    .++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence                   00                                                                    134


Q ss_pred             CCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccc
Q 041723          131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG  210 (228)
Q Consensus       131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~  210 (228)
                      |+.|++++|.+.+..+..+..+++|+.|++++|.+++  ..|..+.++++|++|++++|.+++..+.. +..+++|++|+
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~  344 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYID  344 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEE
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEE
Confidence            5555555555544444555666666666666666664  44555666666777777766666665555 66666666666


Q ss_pred             ccccccccCc
Q 041723          211 SVHETLASSH  220 (228)
Q Consensus       211 l~~n~~~~~~  220 (228)
                      +++|.++..+
T Consensus       345 L~~N~i~~~~  354 (844)
T 3j0a_A          345 LQKNHIAIIQ  354 (844)
T ss_dssp             CCSCCCCCCC
T ss_pred             CCCCCCCccC
Confidence            6666665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5.8e-23  Score=180.87  Aligned_cols=206  Identities=19%  Similarity=0.163  Sum_probs=158.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.+..+.+..++.+++|++|++++|.+    |..++.+++|++|++++|.+.+..+..|..+++|++|+  +++|.
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--Ls~N~  158 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS--MSNNN  158 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSC
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE--eeCCc
Confidence            4567777777777788888888888887762    34567778888888888877765555667778888887  88887


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCCCC---------------------------------------------------
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSGKV---------------------------------------------------  104 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------------  104 (228)
                      +..++  .++.+++|++|++++|.+++..                                                   
T Consensus       159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~  238 (597)
T 3oja_B          159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK  238 (597)
T ss_dssp             CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEE
T ss_pred             CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEE
Confidence            74444  5777777777777777765321                                                   


Q ss_pred             --------CChhhcccc-------ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723          105 --------PDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG  169 (228)
Q Consensus       105 --------p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  169 (228)
                              +..++.++.       .+.+.+..|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++   
T Consensus       239 L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~---  314 (597)
T 3oja_B          239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---  314 (597)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC---
T ss_pred             CCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC---
Confidence                    112233333       344567778899999999999999999984 6777788999999999999998   


Q ss_pred             CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      .+|..+..+++|++|++++|.+++..    +..+++|+.|++++|.+.
T Consensus       315 ~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          315 HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred             ccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCC
Confidence            68888999999999999999998753    456889999998888865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=3e-23  Score=182.58  Aligned_cols=201  Identities=18%  Similarity=0.096  Sum_probs=169.6

Q ss_pred             hhcccccccccccCCCCh------HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC-CCc--ccc
Q 041723           15 AYGTASNAMKTLLQSPSL------ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN-FLP--SLG   85 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~-~~p--~~~   85 (228)
                      .++.+++|+++++++|.+      |..+..+++|++|++++|.+.+ .|..+..+++|++|+  +++|.+. ..|  .+.
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD--FQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE--CTTSEEESTTTTTTTT
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE--CCCCccCCccChhhhh
Confidence            677889999999999973      6789999999999999998875 568889999999999  9999993 334  678


Q ss_pred             CCCCCcEEEeeCCcCCCCCCChhhccccccc-------ccc-ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723           86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTG-EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA  157 (228)
Q Consensus        86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  157 (228)
                      .+++|++|++++|.+.+..|..++.++++..       +.+ ..|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            8999999999999998778888877777443       344 46778899999999999999999877888999999999


Q ss_pred             EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC-CcccccccccccccCccccccCC
Q 041723          158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP-NFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      |++++|.+++  ..|..+..+++|++|++++|+++. +|.. +..++ +|+++++     .++++.|+|++
T Consensus       502 L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~-~p~~-~~~l~~~L~~l~l-----~~N~~~c~c~~  563 (606)
T 3vq2_A          502 LNMSHNNLLF--LDSSHYNQLYSLSTLDCSFNRIET-SKGI-LQHFPKSLAFFNL-----TNNSVACICEH  563 (606)
T ss_dssp             EECCSSCCSC--EEGGGTTTCTTCCEEECTTSCCCC-EESC-GGGSCTTCCEEEC-----CSCCCCCSSTT
T ss_pred             EECCCCcCCC--cCHHHccCCCcCCEEECCCCcCcc-cCHh-HhhhcccCcEEEc-----cCCCcccCCcc
Confidence            9999999997  668889999999999999999985 4555 77776 5999994     45566677753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=9.8e-24  Score=185.72  Aligned_cols=199  Identities=19%  Similarity=0.173  Sum_probs=165.3

Q ss_pred             ccccccccccCCCC--hHHHHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723           18 TASNAMKTLLQSPS--LANLAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND   92 (228)
Q Consensus        18 ~l~~l~~l~l~~~~--l~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~   92 (228)
                      .+++|+++++++|.  .+..+..+++|++|++++|.+++.  .+..+..+++|++|+  +++|.+..+| .+..+++|+.
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~~~l~~L~~  403 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD--LSFNGAIIMSANFMGLEELQH  403 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE--CCSCSEEEECCCCTTCTTCCE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE--CCCCccccchhhccCCCCCCe
Confidence            55666666666663  122455778888888888887765  378888999999999  9999997777 8889999999


Q ss_pred             EEeeCCcCCCCCC-Chhhccccc-------cccccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCC
Q 041723           93 LYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDN  163 (228)
Q Consensus        93 L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n  163 (228)
                      |++++|.+.+..| ..+..++.+       +.+.+..|..++.+++|++|++++|.+.+. .|..+..+++|+.|++++|
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence            9999999986666 566666663       344566788899999999999999999863 6888999999999999999


Q ss_pred             ccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          164 NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       164 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      .+++  ..|..+.++++|++|++++|++++..|.. +.++++|++|++++|+++..|.
T Consensus       484 ~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          484 QLEQ--ISWGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             CCCE--ECTTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCCCEES
T ss_pred             cCCc--cChhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCcccCH
Confidence            9997  66788999999999999999999988888 9999999999999999986553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=9.7e-23  Score=178.16  Aligned_cols=216  Identities=19%  Similarity=0.132  Sum_probs=154.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++|.+..+.+..++.+++|++|++++|.+    |+.+..+++|++||+++|.++. +|..  .+++|++|+  +++|.
T Consensus        58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~--Ls~N~  132 (562)
T 3a79_B           58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLD--LSFND  132 (562)
T ss_dssp             ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEE--CCSSC
T ss_pred             ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEE--CCCCC
Confidence            5678888888888889999999999998873    5678888888888888888874 5544  788888888  88888


Q ss_pred             CCCC--c-cccCCCCCcEEEeeCCcCCC-------------------------CCCChhhccc-----------------
Q 041723           78 ENFL--P-SLGNLTKLNDLYLFGNDFSG-------------------------KVPDSLGDLL-----------------  112 (228)
Q Consensus        78 ~~~~--p-~~~~l~~L~~L~l~~n~l~~-------------------------~~p~~~~~l~-----------------  112 (228)
                      +..+  | .++++++|++|++++|.+++                         ..|..+..+.                 
T Consensus       133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~  212 (562)
T 3a79_B          133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ  212 (562)
T ss_dssp             CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred             ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence            8543  4 67778888888888877653                         1222222211                 


Q ss_pred             ----------------------------------------------------------------c-------cccccccc
Q 041723          113 ----------------------------------------------------------------Q-------LNYLTGEI  121 (228)
Q Consensus       113 ----------------------------------------------------------------~-------~~~l~~~~  121 (228)
                                                                                      .       .+.+.+.+
T Consensus       213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i  292 (562)
T 3a79_B          213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI  292 (562)
T ss_dssp             CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred             hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence                                                                            0       01112333


Q ss_pred             chhh-----------------------------------------------------hcCCCCCEEeccCCcccccCccc
Q 041723          122 LVEI-----------------------------------------------------RKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus       122 ~~~~-----------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                      |..+                                                     +.+++|++|++++|.+.+..|..
T Consensus       293 p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhh
Confidence            4332                                                     55678888888888888777888


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++.+++|+.|++++|.+++...+|..+.++++|++|++++|.+++.+|...+..+++|++|++++|++++..+.
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence            88888999999999888853334566788888999999999888733432267777778888777777654433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.7e-22  Score=159.35  Aligned_cols=178  Identities=25%  Similarity=0.260  Sum_probs=128.3

Q ss_pred             hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCC
Q 041723           15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKL   90 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L   90 (228)
                      ....+.+++.+++.++.+.  +.+..+++|++|++++|.+.+.  ..+..+++|++|+  +++|.+..++  .+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI--LTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE--CTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE--CCCCccCccChhHhcCCcCC
Confidence            3456667888888887642  3577788888888888887763  4677888888888  8888886665  46778888


Q ss_pred             cEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCC
Q 041723           91 NDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD  170 (228)
Q Consensus        91 ~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  170 (228)
                      ++|++++|.+++..+.                 .++.+++|++|++++|.+++..+..+..+++|+.|++++|.+++  .
T Consensus       112 ~~L~L~~n~l~~~~~~-----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~  172 (272)
T 3rfs_A          112 KELVLVENQLQSLPDG-----------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--L  172 (272)
T ss_dssp             CEEECTTSCCCCCCTT-----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C
T ss_pred             CEEECCCCcCCccCHH-----------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--c
Confidence            8888888888733332                 24566778888888887775545556777888888888887775  4


Q ss_pred             cchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                      .+..+..+++|++|++++|.+++..+.. +..+++|+++++++|.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHH-HhCCcCCCEEEccCCCc
Confidence            4455677778888888888887776666 77778888888666644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.7e-22  Score=158.32  Aligned_cols=173  Identities=24%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEe
Q 041723           21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYL   95 (228)
Q Consensus        21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l   95 (228)
                      +.+.+++.++.   +|..+.  +.++.|++++|.+.+..+..+..+++|++|+  +++|.+..++  .+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLN--LDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEE--CCCCcCCccCHhHhccCCcCCEEEC
Confidence            45667777775   455444  5889999999998888888888899999999  9999996665  5788899999999


Q ss_pred             eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723           96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL  175 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~  175 (228)
                      ++|.++ .++..                .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++  ..+..+
T Consensus        91 ~~n~l~-~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~  151 (251)
T 3m19_A           91 ANNQLA-SLPLG----------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IPAGAF  151 (251)
T ss_dssp             TTSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred             CCCccc-ccChh----------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cCHHHc
Confidence            999887 33322                24567888999999998885545557888899999999998885  344468


Q ss_pred             hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ..+++|++|++++|++++.++.. +..+++|+++++++|+++
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGA-FDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSCCBC
T ss_pred             CcCcCCCEEECCCCcCCccCHHH-HhCCCCCCEEEeeCCcee
Confidence            88889999999999998877767 888888999997776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=9e-23  Score=175.61  Aligned_cols=201  Identities=19%  Similarity=0.113  Sum_probs=155.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      ++++|.+..+.+..++.+++|++|++++|.+.  ..+..+++|++|++++|.+++..     ..++|++|+  +++|.+.
T Consensus        40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~--L~~N~l~  112 (487)
T 3oja_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLH--AANNNIS  112 (487)
T ss_dssp             ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE--CCSSCCC
T ss_pred             EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----CCCCcCEEE--CcCCcCC
Confidence            46677777777778888888888888888732  12777788888888888776532     226777777  8888886


Q ss_pred             CCccccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhh-cCCCCCEEeccCCcccccCcccccc
Q 041723           80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIR-KLTQLHILRLAENQLEGSVPSSIFE  151 (228)
Q Consensus        80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~  151 (228)
                      .++. ..+++|+.|++++|.+++..|..++.++.       .|.+.+..|..+. .+++|+.|++++|.+++. |. ...
T Consensus       113 ~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~  189 (487)
T 3oja_A          113 RVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV  189 (487)
T ss_dssp             CEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred             CCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence            6652 24678999999999998766777777666       3455666777775 789999999999999854 43 446


Q ss_pred             CCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       152 l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      +++|+.|++++|.+++   +|+.+..+++|+.|++++|.+++ +|.. +..+++|+.+++++|.+.
T Consensus       190 l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCBC
T ss_pred             CCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCcCcc-cchh-hccCCCCCEEEcCCCCCc
Confidence            8999999999999984   66668899999999999999997 4656 788999999999988887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=9.6e-23  Score=176.41  Aligned_cols=107  Identities=13%  Similarity=0.024  Sum_probs=92.7

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++++++.++.. +.  ++++++++++|.    .|+.+..+++|++|++++|.+++..|.++..+++|++|+  +++|.
T Consensus         6 ~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--Ls~N~   80 (520)
T 2z7x_B            6 DRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD--LSHNK   80 (520)
T ss_dssp             ECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE--CCSSC
T ss_pred             ecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe--cCCCc
Confidence            5678888877643 33  799999999997    357899999999999999999988899999999999999  99999


Q ss_pred             CCCCccccCCCCCcEEEeeCCcCCC-CCCChhhccccc
Q 041723           78 ENFLPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQL  114 (228)
Q Consensus        78 ~~~~p~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~  114 (228)
                      +..+|.. .+++|++|++++|.+++ .+|..++.++++
T Consensus        81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             eeecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence            9989844 89999999999999986 477888877763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=7.6e-22  Score=160.34  Aligned_cols=191  Identities=21%  Similarity=0.275  Sum_probs=137.8

Q ss_pred             hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723           16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL   93 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L   93 (228)
                      .+.+++++++++.++.+.  +.+..+++|++|++++|.+.+..+  +..+++|++|+  +++|.+..++.+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~--L~~n~l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE--LSGNPLKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE--CCSCCCSCCGGGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE--ccCCcCCCchhhcCCCCCCEE
Confidence            345566777777776531  246667777777777777765433  67777777777  777777666666677777777


Q ss_pred             EeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                      ++++|.+++ ++. +..++++..+.      ..++. ++.+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+++
T Consensus       113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence            777777763 332 44444433221      11222 6788999999999999984 444 8899999999999999984


Q ss_pred             CCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          168 TGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                         ++. +..+++|++|++++|++++..+   +..+++|+.|++++|+++..+..
T Consensus       188 ---~~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          188 ---ISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             ---CGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCEE
T ss_pred             ---Chh-hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCee
Confidence               444 7889999999999999987653   67899999999999999876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=6.6e-22  Score=157.89  Aligned_cols=186  Identities=24%  Similarity=0.223  Sum_probs=155.7

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      ++.++.++.+.  .++.+++|+++++++|.+.  +.+..+++|++|++++|.+++..+..+..+++|++|+  +++|.+.
T Consensus        47 ~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~  122 (272)
T 3rfs_A           47 IANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV--LVENQLQ  122 (272)
T ss_dssp             ECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCCC
T ss_pred             eeCCCCccccc--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE--CCCCcCC
Confidence            35566666654  5788999999999999843  4788999999999999999988888899999999999  9999997


Q ss_pred             CCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723           80 FLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA  157 (228)
Q Consensus        80 ~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  157 (228)
                      .++  .+..+++|++|++++|.++ .++..                .++.+++|+.|++++|.+++..+..++.+++|+.
T Consensus       123 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          123 SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG----------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCHHHhccCCCCCEEECCCCccC-ccCHH----------------HhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            776  5889999999999999998 34422                2467889999999999999666666789999999


Q ss_pred             EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      |++++|.+++  ..+..+..+++|+++++++|++.+        .++.++.++++.|.+++
T Consensus       186 L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          186 LRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             EECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGG
T ss_pred             EECCCCcCCc--cCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCC
Confidence            9999999996  556668899999999999998753        35667888888887765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=2.6e-22  Score=183.11  Aligned_cols=213  Identities=20%  Similarity=0.186  Sum_probs=160.8

Q ss_pred             CcCC-cccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchh--ccCCcchHHHHHhhhh
Q 041723            3 HHGT-RKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYA--SANLSSLFSLLSLIAY   75 (228)
Q Consensus         3 ~~~~-~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~~~l~~   75 (228)
                      +++| .+..+.+.+++.+++|++|++++|.    .|+.+..+++|++|++++|.+.+..+..  +..+++|++|+  +++
T Consensus        55 Ls~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~--Ls~  132 (844)
T 3j0a_A           55 LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD--LSK  132 (844)
T ss_dssp             ECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE--EES
T ss_pred             CCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE--CCC
Confidence            3444 4455667777888888888888776    3667777888888888888777655544  77777888877  888


Q ss_pred             cCCCCC--c-cccCCCCCcEEEeeCCcCCCCCCChhhcc--cc-------------------------------------
Q 041723           76 CKENFL--P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDL--LQ-------------------------------------  113 (228)
Q Consensus        76 ~~~~~~--p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~-------------------------------------  113 (228)
                      |.+..+  + .++++++|++|++++|.+++..+..++.+  +.                                     
T Consensus       133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence            877433  2 56777777777777777765444444332  00                                     


Q ss_pred             --------------------------------------------------------------ccccccccchhhhcCCCC
Q 041723          114 --------------------------------------------------------------LNYLTGEILVEIRKLTQL  131 (228)
Q Consensus       114 --------------------------------------------------------------~~~l~~~~~~~~~~l~~L  131 (228)
                                                                                    .+.+.+..+..+..+++|
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  292 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL  292 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC
T ss_pred             CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC
Confidence                                                                          011112234557788999


Q ss_pred             CEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccc
Q 041723          132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGS  211 (228)
Q Consensus       132 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l  211 (228)
                      +.|++++|.+.+..|..+..+++|+.|++++|.+++  ..|..+..+++|+.|++++|.+.+..+.. +.++++|++|++
T Consensus       293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L  369 (844)
T 3j0a_A          293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDL  369 (844)
T ss_dssp             CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSC-SCSCCCCCEEEE
T ss_pred             CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhh-hcCCCCCCEEEC
Confidence            999999999997778889999999999999999986  66788999999999999999999888777 899999999999


Q ss_pred             cccccccCc
Q 041723          212 VHETLASSH  220 (228)
Q Consensus       212 ~~n~~~~~~  220 (228)
                      ++|.++..+
T Consensus       370 s~N~l~~i~  378 (844)
T 3j0a_A          370 RDNALTTIH  378 (844)
T ss_dssp             ETCCSCCCS
T ss_pred             CCCCCCccc
Confidence            999987643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=2.2e-23  Score=169.65  Aligned_cols=191  Identities=22%  Similarity=0.149  Sum_probs=136.8

Q ss_pred             ccccccccccCCCC----hHHHH--hccCCCCeeecCCccCCCCcchhccCC-----cchHHHHHhhhhcCCCCCc--cc
Q 041723           18 TASNAMKTLLQSPS----LANLA--EKLANLKVLHLGQVNTASTVPYASANL-----SSLFSLLSLIAYCKENFLP--SL   84 (228)
Q Consensus        18 ~l~~l~~l~l~~~~----l~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~~~l~~~~~~~~p--~~   84 (228)
                      .+++|++|++++|.    +|..+  ..+++|++|++++|.+++. |..+..+     ++|++|+  +++|.+..++  .+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~--L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLS--IAQAHSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEE--EESCSCCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEE--eeCCCCccchHHHh
Confidence            57788888888886    34444  6788888888888888776 6667666     7888888  8888885554  77


Q ss_pred             cCCCCCcEEEeeCCcCCCC--CCChh--hccccc-------ccccc--ccc-hhhhcCCCCCEEeccCCcccccCc-ccc
Q 041723           85 GNLTKLNDLYLFGNDFSGK--VPDSL--GDLLQL-------NYLTG--EIL-VEIRKLTQLHILRLAENQLEGSVP-SSI  149 (228)
Q Consensus        85 ~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~~-------~~l~~--~~~-~~~~~l~~L~~L~ls~n~l~~~~~-~~~  149 (228)
                      +.+++|++|++++|.+.+.  ++..+  +.++.+       +.+.+  .++ ..+..+++|+.|++++|.+.+..| ..+
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            7888888888888876543  12222  333332       22221  222 223567889999999999886554 445


Q ss_pred             ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      ..+++|+.|++++|.++   .+|..+.  ++|++|++++|++++. |.  +..+++|+++++++|++++.
T Consensus       250 ~~l~~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCCTTCCEEECTTSCCS---SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTCC
T ss_pred             hhcCCCCEEECCCCccC---hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCCC
Confidence            67888999999999888   5676655  7889999999999876 33  67888999999988888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=3.7e-22  Score=174.50  Aligned_cols=107  Identities=19%  Similarity=0.087  Sum_probs=90.8

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      .+++++++.++... .  +++++|++++|.+    |+.+..+++|++|++++|.+++..|.+|..+++|++|+  +++|.
T Consensus        37 ~ls~~~L~~ip~~~-~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--Ls~N~  111 (562)
T 3a79_B           37 DYSNRNLTHVPKDL-P--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD--VSHNR  111 (562)
T ss_dssp             ECTTSCCCSCCTTS-C--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE--CTTSC
T ss_pred             EcCCCCCccCCCCC-C--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE--CCCCc
Confidence            45677888766533 2  6999999999983    46899999999999999999988899999999999999  99999


Q ss_pred             CCCCccccCCCCCcEEEeeCCcCCC-CCCChhhccccc
Q 041723           78 ENFLPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQL  114 (228)
Q Consensus        78 ~~~~p~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~  114 (228)
                      +..+|.. .+++|++|++++|.+++ .+|..++.++++
T Consensus       112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B          112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            9989944 89999999999999985 345788877763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.5e-21  Score=155.63  Aligned_cols=178  Identities=25%  Similarity=0.217  Sum_probs=151.4

Q ss_pred             cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEe
Q 041723           21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYL   95 (228)
Q Consensus        21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l   95 (228)
                      +.+.++++++.   +|..+.  .++++|++++|.+.+..+..+..+++|++|+  +++|.+..+|  .+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY--LNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE--CCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE--CCCCccCeeChhhhcCCCCCCEEEC
Confidence            45678888776   454443  5899999999999987778999999999999  9999998887  5688999999999


Q ss_pred             eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723           96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL  175 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~  175 (228)
                      ++|.++ .+|..                .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  ..+..+
T Consensus        93 ~~n~l~-~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~  153 (270)
T 2o6q_A           93 TDNKLQ-ALPIG----------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVF  153 (270)
T ss_dssp             CSSCCC-CCCTT----------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred             CCCcCC-cCCHh----------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHc
Confidence            999998 44432                25678899999999999997666778999999999999999985  444558


Q ss_pred             hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ..+++|++|++++|.+++..+.. +..+++|++|++++|+++..+..
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcccceeEecCCcCcEeChhH-hccCCCcCEEECCCCcCCcCCHH
Confidence            89999999999999999888777 88999999999999999876643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=1e-22  Score=177.72  Aligned_cols=199  Identities=20%  Similarity=0.182  Sum_probs=148.8

Q ss_pred             ccccccccccCCCChHHH--HhccCCCCeeecCCccCCCCc--chhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723           18 TASNAMKTLLQSPSLANL--AEKLANLKVLHLGQVNTASTV--PYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND   92 (228)
Q Consensus        18 ~l~~l~~l~l~~~~l~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~   92 (228)
                      .+++|+++++.+|.+...  ...+++|++|++++|.+.+..  +..+..+++|++|+  +++|.+..++ .+..+++|+.
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~--l~~n~l~~~~~~~~~l~~L~~  400 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD--LSFNGVITMSSNFLGLEQLEH  400 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE--CCSCSEEEEEEEEETCTTCCE
T ss_pred             cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEE--CCCCccccccccccccCCCCE
Confidence            445555555555542211  145677777777777776543  56677777788877  8888776666 6777788888


Q ss_pred             EEeeCCcCCCCCC-Chhhccccc-------cccccccchhhhcCCCCCEEeccCCccc-ccCccccccCCCCCEEEccCC
Q 041723           93 LYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLE-GSVPSSIFELRNLRALDLSDN  163 (228)
Q Consensus        93 L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n  163 (228)
                      |++++|.+.+..+ ..+..++.+       +.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            8888877765444 345555543       3334556677888999999999999997 467888999999999999999


Q ss_pred             ccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          164 NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       164 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      .+++  ..|..+..+++|++|++++|.+++.++.. +.++++|+++++++|.     +.|.|+
T Consensus       481 ~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~~~~~  535 (570)
T 2z63_A          481 QLEQ--LSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP  535 (570)
T ss_dssp             CCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC-----BCCCTT
T ss_pred             cccc--CChhhhhcccCCCEEeCCCCcCCCCCHHH-hhcccCCcEEEecCCc-----ccCCCc
Confidence            9996  66888999999999999999999988877 8999999999966665     455554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=9.2e-23  Score=168.55  Aligned_cols=208  Identities=18%  Similarity=0.156  Sum_probs=170.4

Q ss_pred             cCCcccccchhhhcccccccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      ++++++.++.. +.  +++++|++++|.+   + +.+..+++|++|++++|.+++..+.++..+++|++|+  +++|.+.
T Consensus        39 ~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~  113 (353)
T 2z80_A           39 SSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD--LSYNYLS  113 (353)
T ss_dssp             CSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCS
T ss_pred             CCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE--CCCCcCC
Confidence            45566666542 33  4899999999983   4 3789999999999999999987888999999999999  9999998


Q ss_pred             CCc--cccCCCCCcEEEeeCCcCCCCCCC--hhhccccccc--------cccccchhhhcCCCCCEEeccCCcccccCcc
Q 041723           80 FLP--SLGNLTKLNDLYLFGNDFSGKVPD--SLGDLLQLNY--------LTGEILVEIRKLTQLHILRLAENQLEGSVPS  147 (228)
Q Consensus        80 ~~p--~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~~~~--------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  147 (228)
                      .+|  .++.+++|++|++++|.++ .+|.  .+..++.+..        +.+..+..++.+++|++|++++|.+.+..|.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            888  4899999999999999998 5665  5666666333        3444566788999999999999999977788


Q ss_pred             ccccCCCCCEEEccCCccccCCCcchh-hhcCCCCCEEEccCCccccccCc-----------------------------
Q 041723          148 SIFELRNLRALDLSDNNLSGTGDLNMV-LLNLESLTALVLSSNKLSLLAGT-----------------------------  197 (228)
Q Consensus       148 ~~~~l~~L~~L~l~~n~~~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~-----------------------------  197 (228)
                      .+..+++|++|++++|.++   .+|.. +..+++|++|++++|.+++..+.                             
T Consensus       193 ~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             TTTTCSEEEEEEEECSCST---THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             HHhccccCCeecCCCCccc---cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence            9999999999999999987   55554 45689999999999999875332                             


Q ss_pred             --cccCCCCCcccccccccccccCcc
Q 041723          198 --TVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       198 --~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                        . +.++++|++|++++|+++..+.
T Consensus       270 ~~~-l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          270 MKL-LNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             HHH-HHTCTTCCEEECCSSCCCCCCT
T ss_pred             HHH-HhcccCCCEEECCCCCCCccCH
Confidence              3 4578899999999999986554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=8.9e-23  Score=165.86  Aligned_cols=190  Identities=21%  Similarity=0.150  Sum_probs=119.4

Q ss_pred             ccccccccCCCCh----HHHH--hccCCCCeeecCCccCCCCcc----hhccCCcchHHHHHhhhhcCCCCCc--cccCC
Q 041723           20 SNAMKTLLQSPSL----ANLA--EKLANLKVLHLGQVNTASTVP----YASANLSSLFSLLSLIAYCKENFLP--SLGNL   87 (228)
Q Consensus        20 ~~l~~l~l~~~~l----~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l   87 (228)
                      ++++++++++|.+    |..+  ..+++|++|++++|.+.+..+    ..+..+++|++|+  +++|.+..++  .++.+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~--Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS--IAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE--EECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE--eeCCCcchhhHHHhccC
Confidence            3466666666542    3333  555666666666666554322    2334455666666  6666663333  55556


Q ss_pred             CCCcEEEeeCCcCCCC--C--CChhhcccccc-------ccc--cccch-hhhcCCCCCEEeccCCcccccCccccccC-
Q 041723           88 TKLNDLYLFGNDFSGK--V--PDSLGDLLQLN-------YLT--GEILV-EIRKLTQLHILRLAENQLEGSVPSSIFEL-  152 (228)
Q Consensus        88 ~~L~~L~l~~n~l~~~--~--p~~~~~l~~~~-------~l~--~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-  152 (228)
                      ++|++|++++|.+.+.  +  +..++.++++.       .+.  ...+. .++.+++|++|++++|.+.+..|..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            6666666666654321  1  11112222221       111  01111 24678899999999999987667767666 


Q ss_pred             --CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          153 --RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       153 --~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                        ++|+.|++++|.++   .+|..+.  ++|++|++++|++++.+  . +..+++|++|++++|++++.
T Consensus       249 ~~~~L~~L~Ls~N~l~---~lp~~~~--~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE---QVPKGLP--AKLRVLDLSSNRLNRAP--Q-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCTTCCCEECCSSCCC---SCCSCCC--SCCSCEECCSCCCCSCC--C-TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCcCCEEECCCCCCC---chhhhhc--CCCCEEECCCCcCCCCc--h-hhhCCCccEEECcCCCCCCC
Confidence              69999999999998   5676553  78999999999998752  2 56789999999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=3.2e-22  Score=163.11  Aligned_cols=200  Identities=20%  Similarity=0.125  Sum_probs=133.9

Q ss_pred             CcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF   80 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~   80 (228)
                      +++|.+..+.+..++.+++|++|++++|.+.  ..+..+++|++|++++|.+++..     ..++|++|+  +++|.+..
T Consensus        41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~--l~~n~l~~  113 (317)
T 3o53_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLH--AANNNISR  113 (317)
T ss_dssp             CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE--CCSSCCSE
T ss_pred             CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----CCCCcCEEE--CCCCccCC
Confidence            4455555555555555555555555555521  11555555555555555554321     224555555  55555544


Q ss_pred             CccccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhh-hcCCCCCEEeccCCcccccCccccccC
Q 041723           81 LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSSIFEL  152 (228)
Q Consensus        81 ~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~l  152 (228)
                      ++ ...+++|++|++++|.+++..+..++.++.+       +.+.+..+..+ ..+++|++|++++|.+++ ++. ...+
T Consensus       114 ~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l  190 (317)
T 3o53_A          114 VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVF  190 (317)
T ss_dssp             EE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCC
T ss_pred             cC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-cccc
Confidence            44 1235678888888888885555566666553       34445555555 467899999999999884 343 3458


Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ++|+.|++++|.++   .+|+.+..+++|++|++++|++++ +|.. +..+++|+.+++++|.+.
T Consensus       191 ~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          191 AKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECCSSCCC---EECGGGGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCCB
T ss_pred             ccCCEEECCCCcCC---cchhhhcccCcccEEECcCCcccc-hhhH-hhcCCCCCEEEccCCCcc
Confidence            89999999999998   466668889999999999999985 4666 788999999998888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=8.5e-23  Score=166.16  Aligned_cols=192  Identities=19%  Similarity=0.136  Sum_probs=143.7

Q ss_pred             ccccccCCCC-----hHHHHh-------ccCCCCeeecCCccCCCCcchhc--cCCcchHHHHHhhhhcCCCCCc-cccC
Q 041723           22 AMKTLLQSPS-----LANLAE-------KLANLKVLHLGQVNTASTVPYAS--ANLSSLFSLLSLIAYCKENFLP-SLGN   86 (228)
Q Consensus        22 l~~l~l~~~~-----l~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~~~l~~~~~~~~p-~~~~   86 (228)
                      ++.+++++|.     +|+.+.       ++++|++|++++|.+++..|..+  ..+++|++|+  +++|.+..+| .+..
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN--LRNVSWATRDAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE--EESCBCSSSSSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE--ccCCCCcchhHHHHH
Confidence            6777777775     344444       68899999999999988888776  8899999999  9999996667 6666


Q ss_pred             C-----CCCcEEEeeCCcCCCCCCChhhcccccccc-------ccc--cchhh--hcCCCCCEEeccCCccccc--Cc-c
Q 041723           87 L-----TKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGE--ILVEI--RKLTQLHILRLAENQLEGS--VP-S  147 (228)
Q Consensus        87 l-----~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~--~~~~~--~~l~~L~~L~ls~n~l~~~--~~-~  147 (228)
                      +     ++|++|++++|.+++..|..++.++++..+       .+.  .|..+  +.+++|++|++++|.+++.  ++ .
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     889999999999986666777777774433       232  23344  7788899999999988721  12 2


Q ss_pred             ccccCCCCCEEEccCCccccCCCcc-hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          148 SIFELRNLRALDLSDNNLSGTGDLN-MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       148 ~~~~l~~L~~L~l~~n~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      .+..+++|+.|++++|.+++  ..| ..+..+++|++|++++|.++. +|.. +.  ++|++|++++|++++.+.
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRD--AAGAPSCDWPSQLNSLNLSFTGLKQ-VPKG-LP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCS--SCCCSCCCCCTTCCEEECTTSCCSS-CCSS-CC--SEEEEEECCSSCCCSCCC
T ss_pred             HHhcCCCCCEEECCCCcCCc--ccchhhhhhcCCCCEEECCCCccCh-hhhh-cc--CCceEEECCCCCCCCChh
Confidence            34577889999999999886  443 345667889999999999984 4554 43  789999999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=2.5e-22  Score=182.72  Aligned_cols=156  Identities=24%  Similarity=0.313  Sum_probs=137.0

Q ss_pred             cchhccCCcchHHHHHhhhhcCCCC------------------Cc-ccc--CCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723           56 VPYASANLSSLFSLLSLIAYCKENF------------------LP-SLG--NLTKLNDLYLFGNDFSGKVPDSLGDLLQL  114 (228)
Q Consensus        56 ~~~~~~~l~~L~~L~~~l~~~~~~~------------------~p-~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  114 (228)
                      +|..+..+++|++|+  +++|.+..                  +| .++  ++++|+.|++++|.+.+.+|..++.++.+
T Consensus       440 IP~~l~~L~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence            788899999999999  99999965                  88 776  99999999999999999999999888773


Q ss_pred             -------cc-ccc-ccchhhhcCC-------CCCEEeccCCcccccCcc--ccccCCCCCEEEccCCccccCCCcchhhh
Q 041723          115 -------NY-LTG-EILVEIRKLT-------QLHILRLAENQLEGSVPS--SIFELRNLRALDLSDNNLSGTGDLNMVLL  176 (228)
Q Consensus       115 -------~~-l~~-~~~~~~~~l~-------~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~p~~~~  176 (228)
                             +. +.+ .+|..++.++       +|+.|++++|.+. .+|.  .++.+++|+.|++++|.++   .+| .+.
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~  592 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---HLE-AFG  592 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---BCC-CCC
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---cch-hhc
Confidence                   33 556 7888777665       9999999999999 7888  8999999999999999998   677 789


Q ss_pred             cCCCCCEEEccCCccccccCccccCCCCC-cccccccccccccCc
Q 041723          177 NLESLTALVLSSNKLSLLAGTTVNTNLPN-FTIIGSVHETLASSH  220 (228)
Q Consensus       177 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~l~l~~n~~~~~~  220 (228)
                      .+++|+.|++++|.++ .+|.. +.++++ |++|++++|+++..|
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCC
T ss_pred             CCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCc
Confidence            9999999999999999 66777 888998 999999999998644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=3.8e-22  Score=173.58  Aligned_cols=140  Identities=19%  Similarity=0.116  Sum_probs=100.1

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|++..+.+..++.+++|++|++++|.+    |+++..+++|++||+++|.+.+..+..++.+++|++|+  +++|.
T Consensus        32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--Ls~n~  109 (549)
T 2z81_A           32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN--LMGNP  109 (549)
T ss_dssp             ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE--CTTCC
T ss_pred             ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE--CCCCc
Confidence            4677888888778888888888888888873    46788888888888888888877777788888888888  88888


Q ss_pred             CCC--Cc-cccCCCCCcEEEeeCCcCCCCCC-Chhhccccc-------cccccccchhhh--------------------
Q 041723           78 ENF--LP-SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIR--------------------  126 (228)
Q Consensus        78 ~~~--~p-~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~--------------------  126 (228)
                      +..  .| .++.+++|++|++++|.+.+.+| ..++.++++       +.+.+..|..++                    
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  189 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE  189 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence            853  34 67788888888888887443444 455555552       233333443333                    


Q ss_pred             ----cCCCCCEEeccCCcccc
Q 041723          127 ----KLTQLHILRLAENQLEG  143 (228)
Q Consensus       127 ----~l~~L~~L~ls~n~l~~  143 (228)
                          .+++|+.|++++|.+.+
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          190 IFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             HHHHSTTTBSEEEEESCBCTT
T ss_pred             hhHhhcccccEEEccCCcccc
Confidence                46677777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=4.2e-21  Score=157.98  Aligned_cols=205  Identities=22%  Similarity=0.320  Sum_probs=116.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++|++..+.  .++.+++|+++++++|.+   ++ +..+++|++|++++|......+ .+..+++|++|+  +++|.+
T Consensus        94 ~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~--l~~~~~  167 (347)
T 4fmz_A           94 YIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT--VTESKV  167 (347)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE--CCSSCC
T ss_pred             EccCCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE--ecCCCc
Confidence            34556665542  466667777777776652   33 5556666666666664333222 245555555555  555555


Q ss_pred             CCCccccCCCCCcEEEeeCCcCCCCCCC---------------------hhhccccccccc------cccchhhhcCCCC
Q 041723           79 NFLPSLGNLTKLNDLYLFGNDFSGKVPD---------------------SLGDLLQLNYLT------GEILVEIRKLTQL  131 (228)
Q Consensus        79 ~~~p~~~~l~~L~~L~l~~n~l~~~~p~---------------------~~~~l~~~~~l~------~~~~~~~~~l~~L  131 (228)
                      ..++.+..+++|+.|++++|.+. .++.                     .+..++.+..+.      ...+. +..+++|
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L  245 (347)
T 4fmz_A          168 KDVTPIANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQL  245 (347)
T ss_dssp             CCCGGGGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             CCchhhccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCC
Confidence            44444444555555555555444 2221                     022333222111      11222 5566667


Q ss_pred             CEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccc
Q 041723          132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGS  211 (228)
Q Consensus       132 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l  211 (228)
                      ++|++++|.+.+ + ..+..+++|+.|++++|.+++   + +.+..+++|+.|++++|++++..+.. +..+++|++|++
T Consensus       246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L  318 (347)
T 4fmz_A          246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD---I-SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFL  318 (347)
T ss_dssp             CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEEC
T ss_pred             CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC---C-hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEc
Confidence            777777776663 2 346677777777777777763   3 34667777777777777777766666 677777788887


Q ss_pred             cccccccCcc
Q 041723          212 VHETLASSHI  221 (228)
Q Consensus       212 ~~n~~~~~~~  221 (228)
                      ++|++++.+.
T Consensus       319 ~~n~l~~~~~  328 (347)
T 4fmz_A          319 SQNHITDIRP  328 (347)
T ss_dssp             CSSSCCCCGG
T ss_pred             cCCccccccC
Confidence            7777776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=7.5e-21  Score=156.45  Aligned_cols=188  Identities=23%  Similarity=0.313  Sum_probs=150.8

Q ss_pred             hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723           15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND   92 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~   92 (228)
                      .++.+++|++++++++.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.++  +++|.+..++.+..+++|+.
T Consensus       150 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~--l~~n~l~~~~~~~~~~~L~~  225 (347)
T 4fmz_A          150 PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT--AYVNQITDITPVANMTRLNS  225 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE--CCSSCCCCCGGGGGCTTCCE
T ss_pred             chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceee--cccCCCCCCchhhcCCcCCE
Confidence            3788889999999988732  237888999999999998876443  77888888888  88888877766778888999


Q ss_pred             EEeeCCcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL  165 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  165 (228)
                      |++++|.++ .++. +..++.+..+       .+ + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+
T Consensus       226 L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC
T ss_pred             EEccCCccC-CCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcC
Confidence            999999887 4443 5555553333       22 2 457889999999999999984 4 4588999999999999999


Q ss_pred             ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ++  ..+..+..+++|++|++++|++++..|   +..+++|+++++++|.++
T Consensus       300 ~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          300 GN--EDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CG--GGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             CC--cChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            87  678889999999999999999998766   568999999999999886

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.2e-21  Score=169.32  Aligned_cols=159  Identities=22%  Similarity=0.212  Sum_probs=122.1

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      ++++|.++.+.+..++.+++|++|++++|.+    ++.+.++++|++|++++|.+++..+.+|..+++|++|+  +++|.
T Consensus        34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~  111 (570)
T 2z63_A           34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV--AVETN  111 (570)
T ss_dssp             ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE--CTTSC
T ss_pred             EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc--ccccc
Confidence            5678888888888999999999999999973    45788899999999999998887778899999999999  99999


Q ss_pred             CCCCc--cccCCCCCcEEEeeCCcCCC-CCCChhhcccccccc-------ccccchhhhcCCCC----CEEeccCCcccc
Q 041723           78 ENFLP--SLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQLNYL-------TGEILVEIRKLTQL----HILRLAENQLEG  143 (228)
Q Consensus        78 ~~~~p--~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L----~~L~ls~n~l~~  143 (228)
                      +..++  .++.+++|++|++++|.+++ .+|..++.+++++.+       .+..+..++.+++|    ..+++++|.+.+
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence            97776  68889999999999999885 468888877774433       34455666666666    677888777765


Q ss_pred             cCccccccCCCCCEEEccCC
Q 041723          144 SVPSSIFELRNLRALDLSDN  163 (228)
Q Consensus       144 ~~~~~~~~l~~L~~L~l~~n  163 (228)
                      ..|..+... +|+.+++++|
T Consensus       192 ~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          192 IQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             ECTTTTTTC-EEEEEEEESC
T ss_pred             cCHHHhccC-cceeEecccc
Confidence            444444333 4555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.4e-22  Score=154.94  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=123.3

Q ss_pred             cccccccCCCC---hH-HHHhccCCCCeeecCCcc-CCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcE
Q 041723           21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVN-TASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLND   92 (228)
Q Consensus        21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~   92 (228)
                      +++++++++|.   +| ..+..+++|++|++++|. ++...+.+|..+++|++|+  +++ |.+..++  .+..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~--l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE--IRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE--EEEETTCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE--CCCCCCeeEcCHHHhCCCCCCCE
Confidence            78888888887   33 367888899999999886 7666666888889999988  888 8887666  6778888999


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCC---EEeccCC-cccccCccccccCCCCC-EEEccCCcccc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLH---ILRLAEN-QLEGSVPSSIFELRNLR-ALDLSDNNLSG  167 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~  167 (228)
                      |++++|.++ .+|. ++                 .+++|+   +|++++| .+.+..+..|..+++|+ .+++++|.++ 
T Consensus       110 L~l~~n~l~-~lp~-~~-----------------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-  169 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD-LT-----------------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-  169 (239)
T ss_dssp             EEEEEECCC-SCCC-CT-----------------TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred             EeCCCCCCc-cccc-cc-----------------cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence            999998887 3554 32                 334444   7777777 66644344566677777 7777777766 


Q ss_pred             CCCcchhhhcCCCCCEEEccCCc-cccccCccccCCC-CCcccccccccccccCccc
Q 041723          168 TGDLNMVLLNLESLTALVLSSNK-LSLLAGTTVNTNL-PNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~  222 (228)
                        .+|.......+|+++++++|+ +++..+.. +..+ ++|+++++++|+++..+..
T Consensus       170 --~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          170 --SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             --EECTTTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             --ccCHhhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh
Confidence              344433223667777777774 66555555 6666 7777777777777665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=5.1e-21  Score=166.47  Aligned_cols=187  Identities=19%  Similarity=0.129  Sum_probs=133.3

Q ss_pred             cCCcccccchhhhcccccccccccCCCChH----H---HHhccCCCCeeecCCccCCCCcc--hhccCCcchHHHHHhhh
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPSLA----N---LAEKLANLKVLHLGQVNTASTVP--YASANLSSLFSLLSLIA   74 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~----~---~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~~~l~   74 (228)
                      ++|++..++...++.+++|+++++++|.+.    +   .+..+++|++|++++|.+++..+  ..+..+++|++|+  ++
T Consensus       318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~--Ls  395 (549)
T 2z81_A          318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD--IS  395 (549)
T ss_dssp             ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE--CT
T ss_pred             ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE--CC
Confidence            345555555555556677777777777632    1   24556677777777777665432  4466677777777  77


Q ss_pred             hcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCC
Q 041723           75 YCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR  153 (228)
Q Consensus        75 ~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  153 (228)
                      +|.+..+| .+..+++|++|++++|.++ .+|..                 +  .++|+.|++++|.+++. +   ..++
T Consensus       396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-----------------~--~~~L~~L~Ls~N~l~~~-~---~~l~  451 (549)
T 2z81_A          396 RNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-----------------I--PQTLEVLDVSNNNLDSF-S---LFLP  451 (549)
T ss_dssp             TCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-----------------S--CTTCSEEECCSSCCSCC-C---CCCT
T ss_pred             CCCCccCChhhcccccccEEECCCCCcc-cccch-----------------h--cCCceEEECCCCChhhh-c---ccCC
Confidence            77776666 6666777777777777765 33321                 1  25799999999999853 3   5788


Q ss_pred             CCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      +|+.|++++|.++   .+|. ...+++|++|++++|++++.++.. +..+++|+++++++|.     +.|.|+
T Consensus       452 ~L~~L~Ls~N~l~---~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~~~~~  514 (549)
T 2z81_A          452 RLQELYISRNKLK---TLPD-ASLFPVLLVMKISRNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCS---SCCC-GGGCTTCCEEECCSSCCCCCCTTG-GGGCTTCCEEECCSSC-----BCCCHH
T ss_pred             hhcEEECCCCccC---cCCC-cccCccCCEEecCCCccCCcCHHH-HhcCcccCEEEecCCC-----ccCCCc
Confidence            9999999999998   5776 467899999999999999988887 8899999999966665     456664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=3.6e-22  Score=162.83  Aligned_cols=204  Identities=18%  Similarity=0.083  Sum_probs=158.9

Q ss_pred             cCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      +.+.+.......+..++++++|++++|.    .|+.+..+++|++|++++|.+++..+  +..+++|++|+  +++|.+.
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~--Ls~n~l~   93 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD--LNNNYVQ   93 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE--CCSSEEE
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE--CcCCccc
Confidence            3444555555666777799999999997    35688899999999999998876554  88899999999  9999886


Q ss_pred             CCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCcccc-ccCCC
Q 041723           80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI-FELRN  154 (228)
Q Consensus        80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~  154 (228)
                      .++.   .++|++|++++|.+++..+..+..+..    .+.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++
T Consensus        94 ~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           94 ELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             EEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             cccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            6662   378999999999988544444444433    455566666678889999999999999986656655 47899


Q ss_pred             CCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723          155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       155 L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      |+.|++++|.+++   ++. ...+++|++|++++|.+++.++ . +..+++|++|++++|+++..+
T Consensus       171 L~~L~L~~N~l~~---~~~-~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          171 LEHLNLQYNFIYD---VKG-QVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             CCEEECTTSCCCE---EEC-CCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCEEC
T ss_pred             CCEEECCCCcCcc---ccc-ccccccCCEEECCCCcCCcchh-h-hcccCcccEEECcCCcccchh
Confidence            9999999999984   444 3458899999999999987644 4 778999999999999998644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.1e-21  Score=153.70  Aligned_cols=187  Identities=18%  Similarity=0.163  Sum_probs=156.1

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC-h---H-HHHhccCCCCeeecCC-ccCCCCcchhccCCcchHHHHHhhhh
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS-L---A-NLAEKLANLKVLHLGQ-VNTASTVPYASANLSSLFSLLSLIAY   75 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~-l---~-~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~~~l~~   75 (228)
                      ++++|+++.+.+..++.+++|+++++++|. +   + ..+..+++|++|++++ |.+++..+..|..+++|++|+  +++
T Consensus        37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~--l~~  114 (239)
T 2xwt_C           37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG--IFN  114 (239)
T ss_dssp             EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE--EEE
T ss_pred             EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe--CCC
Confidence            467899999999999999999999999995 3   4 4788999999999998 899877778899999999999  999


Q ss_pred             cCCCCCccccCCCCCc---EEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCC-EEeccCCcccccCccccc
Q 041723           76 CKENFLPSLGNLTKLN---DLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLH-ILRLAENQLEGSVPSSIF  150 (228)
Q Consensus        76 ~~~~~~p~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~  150 (228)
                      |.+..+|.+..+++|+   +|++++| .++ .+|..                .+..+++|+ .+++++|.+. .+|....
T Consensus       115 n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~----------------~~~~l~~L~~~L~l~~n~l~-~i~~~~~  176 (239)
T 2xwt_C          115 TGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVN----------------AFQGLCNETLTLKLYNNGFT-SVQGYAF  176 (239)
T ss_dssp             ECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTT----------------TTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred             CCCccccccccccccccccEEECCCCcchh-hcCcc----------------cccchhcceeEEEcCCCCCc-ccCHhhc
Confidence            9998898888888888   9999999 887 33322                356788999 9999999998 5665444


Q ss_pred             cCCCCCEEEccCCc-cccCCCcchhhhcC-CCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723          151 ELRNLRALDLSDNN-LSGTGDLNMVLLNL-ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE  214 (228)
Q Consensus       151 ~l~~L~~L~l~~n~-~~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n  214 (228)
                      ..++|+.|++++|. +++  ..+..+.++ ++|+.+++++|++++.++.    .+++|+.|+++++
T Consensus       177 ~~~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT  236 (239)
T ss_dssp             TTCEEEEEECTTCTTCCE--ECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred             CCCCCCEEEcCCCCCccc--CCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence            44899999999995 884  345678888 9999999999999876443    4777888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=8.9e-21  Score=152.88  Aligned_cols=176  Identities=26%  Similarity=0.300  Sum_probs=147.1

Q ss_pred             hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723           15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND   92 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~   92 (228)
                      .++.++++++++++++.+.  +.+..+++|++|++++|.+.+..+  +..+++|++|+  +++|.+..+|.+..+++|++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~--l~~n~l~~~~~l~~l~~L~~  116 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF--LDENKVKDLSSLKDLKKLKS  116 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE--CCSSCCCCGGGGTTCTTCCE
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE--CCCCcCCCChhhccCCCCCE
Confidence            3456788999999998742  358889999999999999987554  88999999999  99999988888889999999


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN  172 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p  172 (228)
                      |++++|.+++ ++                  .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++   ++
T Consensus       117 L~L~~n~i~~-~~------------------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~---~~  172 (291)
T 1h6t_A          117 LSLEHNGISD-IN------------------GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD---IV  172 (291)
T ss_dssp             EECTTSCCCC-CG------------------GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC---CG
T ss_pred             EECCCCcCCC-Ch------------------hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc---ch
Confidence            9999999873 22                  35678899999999999984 3 568899999999999999985   44


Q ss_pred             hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      + +..+++|++|++++|.+++..  . +..+++|+.|++++|+++..+..
T Consensus       173 ~-l~~l~~L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          173 P-LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             G-GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEEEECCCEE
T ss_pred             h-hcCCCccCEEECCCCcCCCCh--h-hccCCCCCEEECcCCcccCCccc
Confidence            4 888999999999999998752  4 77899999999999998876654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.4e-20  Score=152.94  Aligned_cols=184  Identities=25%  Similarity=0.345  Sum_probs=147.9

Q ss_pred             cccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCC
Q 041723           21 NAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN   98 (228)
Q Consensus        21 ~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n   98 (228)
                      +.....+....+.+  ...++++|++|++++|.+.. ++ .+..+++|++|+  +++|.+..++.+..+++|++|++++|
T Consensus        20 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~--L~~n~i~~~~~~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLE--LKDNQITDLAPLKNLTKITELELSGN   95 (308)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEE--CCSSCCCCCGGGTTCCSCCEEECCSC
T ss_pred             HHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEE--ccCCcCCCChhHccCCCCCEEEccCC
Confidence            34445566665443  45678899999999999876 33 688999999999  99999988877899999999999999


Q ss_pred             cCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCc
Q 041723           99 DFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL  171 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  171 (228)
                      .++ .++ .+..++.+..+       .+ ++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++   +
T Consensus        96 ~l~-~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---~  166 (308)
T 1h6u_A           96 PLK-NVS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD---L  166 (308)
T ss_dssp             CCS-CCG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC---C
T ss_pred             cCC-Cch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC---C
Confidence            998 444 56666664433       33 33 37889999999999999984 443 8899999999999999984   5


Q ss_pred             chhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          172 NMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       172 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      +. +..+++|+.|++++|.+++..+   +..+++|++|++++|++++.+.
T Consensus       167 ~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          167 TP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG
T ss_pred             hh-hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCcccc
Confidence            55 8889999999999999987654   6789999999999999987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=6.2e-21  Score=152.37  Aligned_cols=183  Identities=21%  Similarity=0.198  Sum_probs=148.8

Q ss_pred             hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhh
Q 041723           32 LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLG  109 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~  109 (228)
                      +|..+.  +.+++|++++|.+++..+..+..+++|++|+  +++|.+..++  .+..+++|++|++++|.+++..+..+.
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD--LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEE--CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEE--CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            555443  5799999999999887777899999999999  9999997666  789999999999999999866667777


Q ss_pred             ccccccc-------cccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCCccccCCCcchhhhcCCCC
Q 041723          110 DLLQLNY-------LTGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL  181 (228)
Q Consensus       110 ~l~~~~~-------l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L  181 (228)
                      .++.+..       +.+..+..++.+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++  ..+..+..+.++
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L  175 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQM  175 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECGGGGHHHHTC
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCHHHhhhhhhc
Confidence            7766443       3344444678899999999999999853 58889999999999999999986  445667666666


Q ss_pred             C----EEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          182 T----ALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       182 ~----~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      +    ++++++|.+++..+.. +. ..+|++|++++|++++.+..
T Consensus       176 ~~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             TTCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTT
T ss_pred             cccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHh
Confidence            6    8999999999876655 44 45899999999999987654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.6e-20  Score=148.11  Aligned_cols=168  Identities=27%  Similarity=0.322  Sum_probs=140.5

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      .+++.+..++.. +.  .+++.|++++|.+    +..+..+++|++|++++|.+.+..+..+..+++|++|+  +++|.+
T Consensus        21 ~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l   95 (251)
T 3m19_A           21 CQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG--LANNQL   95 (251)
T ss_dssp             CTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCC
T ss_pred             cCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE--CCCCcc
Confidence            345566665542 22  4889999999983    45788999999999999999998888899999999999  999999


Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR  156 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  156 (228)
                      ..+|  .+..+++|++|++++|.++ .+|..                .+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG----------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccChhHhcccCCCCEEEcCCCcCC-CcChh----------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            7776  7789999999999999998 44432                245788999999999999965555789999999


Q ss_pred             EEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                      .|++++|.+++  ..+..+..+++|+++++++|++...
T Consensus       159 ~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          159 TLSLSTNQLQS--VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999996  5556788899999999999999765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.3e-21  Score=168.50  Aligned_cols=188  Identities=19%  Similarity=0.095  Sum_probs=152.8

Q ss_pred             ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEe
Q 041723           20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYL   95 (228)
Q Consensus        20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l   95 (228)
                      +++++|++++|.+    |..+..+++|++|++++|.+++..|  +..+++|++|+  +++|.+..+|.   .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~--Ls~N~l~~l~~---~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD--LNNNYVQELLV---GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEE--CCSSEEEEEEE---CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEE--ecCCcCCCCCC---CCCcCEEEC
Confidence            3899999999873    5688899999999999998877555  88899999999  99998876662   278999999


Q ss_pred             eCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccc-cCCCCCEEEccCCccccCCC
Q 041723           96 FGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNLSGTGD  170 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~  170 (228)
                      ++|.+++..+..+..+..    .+.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++   
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---  183 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---  183 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---
Confidence            999998654444444443    4566677787888999999999999999977777775 78999999999999985   


Q ss_pred             cchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723          171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      +|. ...+++|+.|++++|.+++.++ . +..+++|+.|++++|.+++.|
T Consensus       184 ~~~-~~~l~~L~~L~Ls~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          184 VKG-QVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             EEC-CCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCEEC
T ss_pred             ccc-cccCCCCCEEECCCCCCCCCCH-h-HcCCCCccEEEecCCcCcccc
Confidence            344 3458999999999999998655 4 778999999999999998744

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=8.5e-20  Score=156.14  Aligned_cols=190  Identities=25%  Similarity=0.266  Sum_probs=106.1

Q ss_pred             hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723           16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL   93 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L   93 (228)
                      ++.+++|+++++++|.+.  ..+..+++|++|++++|.+.+.  ..+..+++|++|+  +++|.+..++.+..+++|+.|
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L  270 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD--LANNQISNLAPLSGLTKLTEL  270 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE--CCSSCCCCCGGGTTCTTCSEE
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE--CCCCccccchhhhcCCCCCEE
Confidence            444445555555544421  0134445555555555554432  2344555555555  555555444445555556666


Q ss_pred             EeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      ++++|.+++ ++. +..++.+.       .+.+..+  ++.+++|+.|++++|.+.+..|  +..+++|+.|++++|.++
T Consensus       271 ~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          271 KLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             ECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            666655552 222 33333322       2222222  5566677777777777664433  566777777777777766


Q ss_pred             cCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      +   + +.+..+++|+.|++++|++++..|   +..+++|++|++++|+++..|..
T Consensus       345 ~---~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          345 D---V-SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             C---C-GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCCBC
T ss_pred             C---c-hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCchh
Confidence            4   2 346677777777777777776655   45677777777777777765543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=2.2e-20  Score=150.44  Aligned_cols=181  Identities=19%  Similarity=0.102  Sum_probs=132.5

Q ss_pred             CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      .+++.++.++... .  ++++.|++++|.+    +..+..+++|++|++++|.+++..+  ...+++|++|+  +++|.+
T Consensus        17 ~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~--Ls~N~l   89 (290)
T 1p9a_G           17 CDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD--LSHNQL   89 (290)
T ss_dssp             CTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE--CCSSCC
T ss_pred             CCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE--CCCCcC
Confidence            3455555554322 1  4677777777763    4567777788888888777765332  26677777777  888877


Q ss_pred             CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccccc
Q 041723           79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF  150 (228)
Q Consensus        79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  150 (228)
                      ..+| .+..+++|++|++++|++++..+..+..++++       |.+.+..+..+..+++|+.|++++|.++...+..+.
T Consensus        90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G           90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence            7777 67777778888888887774444556665553       333444445567899999999999999954445678


Q ss_pred             cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723          151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       151 ~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~  193 (228)
                      .+++|+.|++++|.++   .+|..+.....|+.+++++|++..
T Consensus       170 ~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          170 GLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCCccC
Confidence            8999999999999998   688888888999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=5.7e-20  Score=161.69  Aligned_cols=176  Identities=26%  Similarity=0.292  Sum_probs=145.5

Q ss_pred             hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723           16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL   93 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L   93 (228)
                      +..+.+|+.|+++++.+.  +.+..+++|+.|++++|.+.+..+  +..+++|+.|+  +++|.+..+|.+..+++|+.|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~--Ls~N~l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF--LDENKIKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE--CCSSCCCCCTTSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE--CcCCCCCCChhhccCCCCCEE
Confidence            567788999999988742  368889999999999999987555  88999999999  999999888888899999999


Q ss_pred             EeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcch
Q 041723           94 YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM  173 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~  173 (228)
                      ++++|.+++ ++                  .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++   +++
T Consensus       115 ~Ls~N~l~~-l~------------------~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---~~~  170 (605)
T 1m9s_A          115 SLEHNGISD-IN------------------GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD---IVP  170 (605)
T ss_dssp             ECTTSCCCC-CG------------------GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC---CGG
T ss_pred             EecCCCCCC-Cc------------------cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC---chh
Confidence            999999873 22                  25678889999999999984 3 568889999999999999885   334


Q ss_pred             hhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccc
Q 041723          174 VLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC  223 (228)
Q Consensus       174 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  223 (228)
                       +..+++|+.|+|++|.+++.  .. +..+++|+.|++++|++...++..
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEECCSEEEECCCCCC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEccCCcCcCCcccc
Confidence             88889999999999999875  34 778999999999999988876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=6.8e-20  Score=156.75  Aligned_cols=70  Identities=17%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++++|.+..+.+  ++.+++|+++++++|.   +++ +.++++|++|++++|.+.+..+  +..+++|++|+  +++|.+
T Consensus        74 ~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~--l~~n~l  146 (466)
T 1o6v_A           74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE--LSSNTI  146 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE--EEEEEE
T ss_pred             ECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE--CCCCcc
Confidence            355666666654  6666777777777665   233 6666666666666666655322  55555555555  555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=1.1e-19  Score=155.20  Aligned_cols=194  Identities=21%  Similarity=0.175  Sum_probs=121.2

Q ss_pred             CcCCcccccchhhhcccccccccccCCCChHH-HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLAN-LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL   81 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~   81 (228)
                      ++++.+..++  .++.+++|+++++++|.+.. .++.+++|++|++++|.+++. +  ++.+++|++|+  +++|.+..+
T Consensus        49 Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~--L~~N~l~~l  121 (457)
T 3bz5_A           49 CHNSSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN--CDTNKLTKL  121 (457)
T ss_dssp             CCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE--CCSSCCSCC
T ss_pred             ccCCCcccCh--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE--CCCCcCCee
Confidence            4555565553  46666677777777666321 156666777777777766653 2  66667777777  777777555


Q ss_pred             ccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCC
Q 041723           82 PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRN  154 (228)
Q Consensus        82 p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  154 (228)
                      | ++.+++|++|++++|.+++ ++  ++.++.+..+       .+.+  .++.+++|+.|++++|.+++ +|  +..+++
T Consensus       122 ~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~  192 (457)
T 3bz5_A          122 D-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL  192 (457)
T ss_dssp             C-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred             c-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence            4 5666777777777777764 32  3333332222       1222  25566777777777777774 44  666777


Q ss_pred             CCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       155 L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      |+.|++++|.+++   +  .+..+++|++|++++|++++. |   +..+++|++|++++|++++.++
T Consensus       193 L~~L~l~~N~l~~---~--~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          193 LNRLNCDTNNITK---L--DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CCEEECCSSCCSC---C--CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCEEECcCCcCCe---e--ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCCcCCCcCH
Confidence            7777777777764   2  256667777777777777763 3   4566777777777777766554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=8e-20  Score=141.48  Aligned_cols=144  Identities=21%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccc
Q 041723           43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGE  120 (228)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~  120 (228)
                      +.++.+++.++. +|..+.  ++++.|+  +++|.+..++  .+..+++|+.|++++|.+++..|.              
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~--l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~--------------   74 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIR--LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD--------------   74 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEE--CCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT--------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEE--CCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH--------------
Confidence            345555555443 232221  3455555  5555554444  455556666666666655522222              


Q ss_pred             cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcccc
Q 041723          121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVN  200 (228)
Q Consensus       121 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  200 (228)
                         .+..+++|+.|++++|.++...+..|..+++|+.|++++|.+++  ..|..+..+++|++|++++|.+++..+.. +
T Consensus        75 ---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~  148 (220)
T 2v9t_B           75 ---AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGT-F  148 (220)
T ss_dssp             ---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTT-T
T ss_pred             ---HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHH-H
Confidence               23445556666666666653222334556666666666666654  34455555666666666666666555554 5


Q ss_pred             CCCCCcccccc
Q 041723          201 TNLPNFTIIGS  211 (228)
Q Consensus       201 ~~l~~L~~l~l  211 (228)
                      ..+++|+++++
T Consensus       149 ~~l~~L~~L~L  159 (220)
T 2v9t_B          149 SPLRAIQTMHL  159 (220)
T ss_dssp             TTCTTCCEEEC
T ss_pred             hCCCCCCEEEe
Confidence            55666666663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=4.3e-20  Score=140.52  Aligned_cols=155  Identities=18%  Similarity=0.310  Sum_probs=131.2

Q ss_pred             HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccc
Q 041723           36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN  115 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~  115 (228)
                      ...+++|++|++++|.+.. ++ .+..+++|++|+  +++|.+..++.+..+++|++|++++|.+++..+.         
T Consensus        40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---------  106 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLT--INNIHATNYNPISGLSNLERLRIMGKDVTSDKIP---------  106 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEE--EESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC---------
T ss_pred             hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEE--ccCCCCCcchhhhcCCCCCEEEeECCccCcccCh---------
Confidence            3667899999999999874 45 688999999999  9999888888888999999999999998743343         


Q ss_pred             ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                              .++.+++|++|++++|.+.+..+..+..+++|+.|++++|. ++   .+| .+..+++|++|++++|.+++.
T Consensus       107 --------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          107 --------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---DIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             --------CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             --------hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---ccH-hhcCCCCCCEEECCCCCCcCh
Confidence                    35678899999999999997778889999999999999998 66   556 588999999999999999875


Q ss_pred             cCccccCCCCCccccccccccccc
Q 041723          195 AGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       195 ~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      .  . +..+++|++|++++|++++
T Consensus       175 ~--~-l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          175 R--G-IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             T--T-GGGCSSCCEEEECBC----
T ss_pred             H--H-hccCCCCCEEEeeCcccCC
Confidence            4  4 7889999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.1e-20  Score=156.81  Aligned_cols=175  Identities=24%  Similarity=0.263  Sum_probs=139.7

Q ss_pred             cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhcc-CCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee
Q 041723           23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASA-NLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF   96 (228)
Q Consensus        23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~   96 (228)
                      ..++++++.   +|..+.  ..+++|++++|.+++..+..+. .+++|++|+  +++|.+..++  .+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~--L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL--LSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEE--CCCCcCCccChhhccCCCCCCEEECC
Confidence            456676665   455443  4689999999999887777777 899999999  9999997776  68999999999999


Q ss_pred             CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh-
Q 041723           97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL-  175 (228)
Q Consensus        97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~-  175 (228)
                      +|.++ .++.                ..+..+++|+.|++++|.+....|..|..+++|+.|++++|.+++   +|..+ 
T Consensus        97 ~N~l~-~~~~----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~  156 (361)
T 2xot_A           97 SNHLH-TLDE----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVELI  156 (361)
T ss_dssp             SSCCC-EECT----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCGGGT
T ss_pred             CCcCC-cCCH----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe---eCHHHh
Confidence            99987 3332                235678899999999999997668889999999999999999984   55543 


Q ss_pred             ---hcCCCCCEEEccCCccccccCccccCCCCCc--ccccccccccccCccccccCC
Q 041723          176 ---LNLESLTALVLSSNKLSLLAGTTVNTNLPNF--TIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       176 ---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~l~l~~n~~~~~~~~~~~~~  227 (228)
                         ..+++|+.|+|++|++++..+.. +..++.+  +.++     +.++++.|+|++
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~~~l~~l~-----l~~N~~~C~C~l  207 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTD-LQKLPAWVKNGLY-----LHNNPLECDCKL  207 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHH-HHHSCHHHHTTEE-----CCSSCEECCHHH
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHH-hhhccHhhcceEE-----ecCCCccCCcCc
Confidence               56899999999999999876666 7777763  6777     666777788853

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.80  E-value=3e-19  Score=152.49  Aligned_cols=190  Identities=20%  Similarity=0.132  Sum_probs=157.0

Q ss_pred             ccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCC
Q 041723           10 KIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNL   87 (228)
Q Consensus        10 ~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l   87 (228)
                      ...+..++.+++++++++++|.+.  +.+..+++|++|++++|.+++. +  ++.+++|++|+  +++|.+..++ ++.+
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~--Ls~N~l~~~~-~~~l  105 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLA--CDSNKLTNLD-VTPL  105 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE--CCSSCCSCCC-CTTC
T ss_pred             cccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEE--CcCCCCceee-cCCC
Confidence            344557788999999999999842  2688999999999999999875 3  88999999999  9999997776 7889


Q ss_pred             CCCcEEEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEc
Q 041723           88 TKLNDLYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDL  160 (228)
Q Consensus        88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  160 (228)
                      ++|++|++++|.+++ +|  ++.++.+.       .+.+.   .++.+++|++|++++|...+.+  .+..+++|+.|++
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            999999999999985 54  55555533       33342   2678899999999999655455  4788999999999


Q ss_pred             cCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          161 SDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       161 ~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++|.+++   +|  +..+++|+.|++++|.+++.   . +..+++|++|++++|++++.++.
T Consensus       178 s~n~l~~---l~--l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~ip~~  230 (457)
T 3bz5_A          178 SFNKITE---LD--VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTEIDVT  230 (457)
T ss_dssp             CSSCCCC---CC--CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             CCCccce---ec--cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccccCcc
Confidence            9999985   44  77889999999999999875   3 67899999999999999987743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=2e-21  Score=162.33  Aligned_cols=217  Identities=16%  Similarity=0.170  Sum_probs=147.9

Q ss_pred             CCcCCcccccchhh----hcccccccccccCCCC-------hHHH-------HhccCCCCeeecCCccCCC----Ccchh
Q 041723            2 WHHGTRKKKIATAA----YGTASNAMKTLLQSPS-------LANL-------AEKLANLKVLHLGQVNTAS----TVPYA   59 (228)
Q Consensus         2 ~~~~~~~~~~~~~~----~~~l~~l~~l~l~~~~-------l~~~-------~~~l~~L~~L~l~~n~~~~----~~~~~   59 (228)
                      .+++|++.......    +..+++|++|++++|.       +|..       +..+++|++|++++|.+..    .++..
T Consensus        38 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  117 (386)
T 2ca6_A           38 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF  117 (386)
T ss_dssp             ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH
Confidence            35566666554433    5577888888888762       2433       3677888888888888876    36667


Q ss_pred             ccCCcchHHHHHhhhhcCCCC-----Cc-cccCC---------CCCcEEEeeCCcCC-CCCC---Chhhccccccc----
Q 041723           60 SANLSSLFSLLSLIAYCKENF-----LP-SLGNL---------TKLNDLYLFGNDFS-GKVP---DSLGDLLQLNY----  116 (228)
Q Consensus        60 ~~~l~~L~~L~~~l~~~~~~~-----~p-~~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~~~~----  116 (228)
                      +..+++|++|+  +++|.++.     ++ .+..+         ++|++|++++|.++ +.++   ..+..++.+..    
T Consensus       118 l~~~~~L~~L~--L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  195 (386)
T 2ca6_A          118 LSKHTPLEHLY--LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV  195 (386)
T ss_dssp             HHHCTTCCEEE--CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHhCCCCCEEE--CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence            77888888888  88888732     22 23333         78888888888876 2333   23334444322    


Q ss_pred             ---cc--c---ccchhhhcCCCCCEEeccCCccc----ccCccccccCCCCCEEEccCCccccC--CCcchhhhc--CCC
Q 041723          117 ---LT--G---EILVEIRKLTQLHILRLAENQLE----GSVPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLN--LES  180 (228)
Q Consensus       117 ---l~--~---~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~--l~~  180 (228)
                         +.  +   ..+..+..+++|+.|++++|.++    ..+|..+..+++|+.|++++|.+++.  ..++..+..  +++
T Consensus       196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~  275 (386)
T 2ca6_A          196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  275 (386)
T ss_dssp             SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence               22  1   22336778888899999988885    45677788888899999999888751  114566643  788


Q ss_pred             CCEEEccCCcccc----ccCccccCCCCCcccccccccccccCc
Q 041723          181 LTALVLSSNKLSL----LAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       181 L~~L~L~~n~l~~----~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      |++|++++|.+++    .++..+..++++|++|++++|++++..
T Consensus       276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            9999999998887    355541366888999999999888655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.9e-20  Score=152.09  Aligned_cols=192  Identities=17%  Similarity=0.121  Sum_probs=148.6

Q ss_pred             cccccccCCCChHH-------HHhccCCCCeeecCCccCCCCcchhc--cCCcchHHHHHhhhhcCCCC-Cc-----ccc
Q 041723           21 NAMKTLLQSPSLAN-------LAEKLANLKVLHLGQVNTASTVPYAS--ANLSSLFSLLSLIAYCKENF-LP-----SLG   85 (228)
Q Consensus        21 ~l~~l~l~~~~l~~-------~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~~~l~~~~~~~-~p-----~~~   85 (228)
                      .++.+.+..+.+++       .+..+.+|++|++++|.+.+..|..+  ..+++|++|+  +++|.+.. .+     .+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~--Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLR--LRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCE--EESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEE--eecccccchhhhhHHHHhh
Confidence            56777777776432       23345779999999999999888888  8999999999  99999943 22     345


Q ss_pred             CCCCCcEEEeeCCcCCCCCCChhhccccccccc-------cc--cc--hhhhcCCCCCEEeccCCcccccCcc----ccc
Q 041723           86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-------GE--IL--VEIRKLTQLHILRLAENQLEGSVPS----SIF  150 (228)
Q Consensus        86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~-------~~--~~--~~~~~l~~L~~L~ls~n~l~~~~~~----~~~  150 (228)
                      .+++|++|++++|.+.+..+..++.++.+..++       +.  ++  ..++.+++|++|++++|.++ .++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            789999999999999876777777777644432       21  21  22367889999999999997 3443    257


Q ss_pred             cCCCCCEEEccCCccccCCCcchhhhcC---CCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          151 ELRNLRALDLSDNNLSGTGDLNMVLLNL---ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       151 ~l~~L~~L~l~~n~~~~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      .+++|++|++++|.+++  ..|+.+..+   ++|++|++++|+++.. |.. +  .++|++|++++|++++.+.
T Consensus       222 ~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~-~--~~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFAGLEQV-PKG-L--PAKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             HTCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSSCCCSC-CSC-C--CSCCSCEECCSCCCCSCCC
T ss_pred             cCCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEEECCCCCCCch-hhh-h--cCCCCEEECCCCcCCCCch
Confidence            88999999999999997  557666665   6999999999999954 555 4  3799999999999998654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=1.8e-19  Score=143.17  Aligned_cols=172  Identities=23%  Similarity=0.256  Sum_probs=131.8

Q ss_pred             ccccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEe
Q 041723           18 TASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYL   95 (228)
Q Consensus        18 ~l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l   95 (228)
                      .+.++..++++++.+.+  .+..+++|++|++++|.+.. ++ .+..+++|++|+  +++|.+..++.+..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--L~~N~i~~~~~l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELH--LSHNQISDLSPLKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEE--CCSSCCCCCGGGTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEE--CCCCccCCChhhccCCCCCEEEC
Confidence            45567777888877432  57788889999998888875 33 678888888888  88888877777888888999999


Q ss_pred             eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723           96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL  175 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~  175 (228)
                      ++|.++ .+|..                  .. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++   ++ .+
T Consensus        93 ~~N~l~-~l~~~------------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~---~~-~l  146 (263)
T 1xeu_A           93 NRNRLK-NLNGI------------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS---IV-ML  146 (263)
T ss_dssp             CSSCCS-CCTTC------------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB---CG-GG
T ss_pred             CCCccC-CcCcc------------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC---Ch-HH
Confidence            998887 34421                  12 678888888888874 33 57888888888888888874   44 57


Q ss_pred             hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ..+++|++|++++|++++.  .. +..+++|+.|++++|+++..+..
T Consensus       147 ~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          147 GFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             GGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEEEEEECCCEE
T ss_pred             ccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCCCcccCCccc
Confidence            7888888888888888876  44 77888888888888888776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=7.3e-19  Score=136.84  Aligned_cols=147  Identities=24%  Similarity=0.235  Sum_probs=95.7

Q ss_pred             ccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCC
Q 041723           24 KTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGN   98 (228)
Q Consensus        24 ~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n   98 (228)
                      .++.+++.   +|..+.  ++|++|++++|.+.+..+..+..+++|++|+  +++|.++.+|  .+..+++|++|++++|
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELY--LGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEE--CCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            34444443   444332  6777777777777776677777777777777  7777776665  4566777777777777


Q ss_pred             cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723           99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .++ .++..                .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++  ..+..+..+
T Consensus        99 ~l~-~l~~~----------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l  158 (229)
T 3e6j_A           99 QLT-VLPSA----------------VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS--IPHGAFDRL  158 (229)
T ss_dssp             CCC-CCCTT----------------TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--CCTTTTTTC
T ss_pred             cCC-ccChh----------------HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc--cCHHHHhCC
Confidence            776 33322                2345667777777777776 566666777777777777777764  333456667


Q ss_pred             CCCCEEEccCCccccc
Q 041723          179 ESLTALVLSSNKLSLL  194 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~~  194 (228)
                      ++|+.+++++|++...
T Consensus       159 ~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          159 SSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTCCEEECTTSCBCTT
T ss_pred             CCCCEEEeeCCCccCC
Confidence            7777777777776644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=2.9e-20  Score=152.19  Aligned_cols=205  Identities=17%  Similarity=0.172  Sum_probs=129.9

Q ss_pred             cCCcccccchhhhcccccccccccCCCC-----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc-C
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPS-----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC-K   77 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~-~   77 (228)
                      .++.+....+. +..+++|+++++++|.     ++..+..+++|++|++++|.+.+..+..+..+++|++|+  +++| .
T Consensus        78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~--L~~~~~  154 (336)
T 2ast_B           78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN--LSGCSG  154 (336)
T ss_dssp             TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE--CTTCBS
T ss_pred             CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE--CCCCCC
Confidence            34444444333 4567888888888885     456777888888888888888777778888888888888  8888 5


Q ss_pred             CC--CCc-cccCCCCCcEEEeeCC-cCCCC-CCChhhccc-ccccc---------c-cccchhhhcCCCCCEEeccCCc-
Q 041723           78 EN--FLP-SLGNLTKLNDLYLFGN-DFSGK-VPDSLGDLL-QLNYL---------T-GEILVEIRKLTQLHILRLAENQ-  140 (228)
Q Consensus        78 ~~--~~p-~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~~~~l---------~-~~~~~~~~~l~~L~~L~ls~n~-  140 (228)
                      ++  .++ .+..+++|++|++++| .+++. ++..+..++ ++..+         + +.++..+..+++|+.|++++|. 
T Consensus       155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            64  356 5777888888888888 77632 344444444 32222         1 3344555666777777777776 


Q ss_pred             ccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC-CCccccccccccccc
Q 041723          141 LEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL-PNFTIIGSVHETLAS  218 (228)
Q Consensus       141 l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~l~l~~n~~~~  218 (228)
                      +++..+..+..+++|+.|++++|. +++  .....+..+++|++|++++| +....    +..+ ..+..|++++|++++
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~-i~~~~----~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI-VPDGT----LQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS-SCTTC----HHHHHHHSTTSEESCCCSCC
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHHHhcCCCCCEEeccCc-cCHHH----HHHHHhhCcceEEecccCcc
Confidence            554555566667777777777764 222  11224566677777777766 33221    1222 224455566666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=137.42  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc---cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723           43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG  119 (228)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~  119 (228)
                      +.+++++|.++. +|..+.  ..+++|+  +++|.+..++   .+..+++|+.|++++|.+++..+              
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--------------   74 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--------------   74 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------------
Confidence            456666666554 333322  2345556  6666664442   35666666777776666652222              


Q ss_pred             ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccc
Q 041723          120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV  199 (228)
Q Consensus       120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~  199 (228)
                         ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  ..|..+..+++|++|++++|.+++..|.. 
T Consensus        75 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-  148 (220)
T 2v70_A           75 ---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGA-  148 (220)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC--BCTTSSTTCTTCSEEECTTSCCCCBCTTT-
T ss_pred             ---HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe--ECHhHcCCCccCCEEECCCCcCCEECHHH-
Confidence               124455666667777776665445556666677777777776664  44556666666777777777766665665 


Q ss_pred             cCCCCCccccccccc
Q 041723          200 NTNLPNFTIIGSVHE  214 (228)
Q Consensus       200 ~~~l~~L~~l~l~~n  214 (228)
                      +..+++|+++++++|
T Consensus       149 ~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          149 FDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTTCTTCCEEECCSC
T ss_pred             hcCCCCCCEEEecCc
Confidence            666666666664433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=8.8e-19  Score=141.16  Aligned_cols=163  Identities=25%  Similarity=0.275  Sum_probs=139.5

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      +++++.++.+.  .++.+++|++|++++|.   +++ +..+++|++|++++|.+.+  .+.+..+++|++|+  +++|.+
T Consensus        52 ~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~--L~~n~i  124 (291)
T 1h6t_A           52 IANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS--LEHNGI  124 (291)
T ss_dssp             ECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE--CTTSCC
T ss_pred             EccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE--CCCCcC
Confidence            45677777774  48889999999999998   444 8899999999999999976  33489999999999  999999


Q ss_pred             CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEE
Q 041723           79 NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRAL  158 (228)
Q Consensus        79 ~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  158 (228)
                      ..++.+..+++|+.|++++|.+++ ++                  .+..+++|+.|++++|.+.+. +. +..+++|+.|
T Consensus       125 ~~~~~l~~l~~L~~L~l~~n~l~~-~~------------------~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L  183 (291)
T 1h6t_A          125 SDINGLVHLPQLESLYLGNNKITD-IT------------------VLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNL  183 (291)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC-CG------------------GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred             CCChhhcCCCCCCEEEccCCcCCc-ch------------------hhccCCCCCEEEccCCccccc-hh-hcCCCccCEE
Confidence            888888899999999999999983 22                  356789999999999999854 43 8899999999


Q ss_pred             EccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723          159 DLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG  196 (228)
Q Consensus       159 ~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  196 (228)
                      ++++|.+++   ++. +..+++|+.|++++|+++....
T Consensus       184 ~L~~N~i~~---l~~-l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          184 YLSKNHISD---LRA-LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             ECCSSCCCB---CGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred             ECCCCcCCC---Chh-hccCCCCCEEECcCCcccCCcc
Confidence            999999984   554 8899999999999999986543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=4.9e-19  Score=135.60  Aligned_cols=150  Identities=27%  Similarity=0.264  Sum_probs=86.2

Q ss_pred             CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723           40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      +++++|++++|.+.+..+..+..+++|++|+  +++|.+..+|  .+..+++|++|++++|.++ .++..          
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~----------   94 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLY--LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNG----------   94 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEE--CCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHh----------
Confidence            3566666666666655555566666666666  6666665555  3556666666666666665 23321          


Q ss_pred             ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc
Q 041723          118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT  197 (228)
Q Consensus       118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  197 (228)
                            .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  ..+..+..+++|+++++++|++.+    
T Consensus        95 ------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           95 ------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             ------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce--eCHHHhccCCCccEEEecCCCeec----
Confidence                  13455566666666666664333445666666666666666663  233335556666666666664432    


Q ss_pred             cccCCCCCccccccccccccc
Q 041723          198 TVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       198 ~~~~~l~~L~~l~l~~n~~~~  218 (228)
                          .++.++.++++.|++++
T Consensus       163 ----~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTT
T ss_pred             ----CCCCHHHHHHHHHhCCc
Confidence                24445555555555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-18  Score=132.36  Aligned_cols=158  Identities=27%  Similarity=0.259  Sum_probs=131.6

Q ss_pred             cccccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcE
Q 041723           19 ASNAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLND   92 (228)
Q Consensus        19 l~~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~   92 (228)
                      .++++++++++|.+   + +.+..+++|++|++++|.+++..+..+..+++|++|+  +++|.+..+|  .+..+++|++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN--LSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE--CCCCcCCccCHhHhcCccCCCE
Confidence            35899999999973   3 4578899999999999999887777789999999999  9999997777  5789999999


Q ss_pred             EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN  172 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p  172 (228)
                      |++++|.++ .++..                .+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..     
T Consensus       105 L~L~~N~l~-~~~~~----------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A          105 LALNTNQLQ-SLPDG----------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             EECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             EEcCCCcCc-ccCHh----------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            999999998 34422                24678899999999999986555568899999999999998764     


Q ss_pred             hhhhcCCCCCEEEccCCccccccCccccCCCCC
Q 041723          173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN  205 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  205 (228)
                          .++.++.++++.|.+++.+|.. ++.++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~-~~~l~~  190 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNS-AGSVAP  190 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCT-TSSBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeecc-CccccC
Confidence                2456888999999999998887 776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.4e-18  Score=150.45  Aligned_cols=171  Identities=26%  Similarity=0.307  Sum_probs=144.3

Q ss_pred             CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723            1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK   77 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~   77 (228)
                      +.++++.+..++  .++.+++|+.|++++|.   +++ +..+++|+.|++++|.+.+  ++.+..+++|+.|+  +++|.
T Consensus        48 L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~--Ls~N~  120 (605)
T 1m9s_A           48 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLS--LEHNG  120 (605)
T ss_dssp             CBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEE--CTTSC
T ss_pred             EECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEE--ecCCC
Confidence            346677777775  58899999999999998   444 8899999999999999976  33789999999999  99999


Q ss_pred             CCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723           78 ENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA  157 (228)
Q Consensus        78 ~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  157 (228)
                      +..++.+..+++|+.|++++|.+++ ++                  .+..+++|+.|++++|.+.+..|  +..+++|+.
T Consensus       121 l~~l~~l~~l~~L~~L~Ls~N~l~~-l~------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          121 ISDINGLVHLPQLESLYLGNNKITD-IT------------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCC-CG------------------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCccccCCCccCEEECCCCccCC-ch------------------hhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            9888889999999999999999983 21                  35688999999999999996544  899999999


Q ss_pred             EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC
Q 041723          158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP  204 (228)
Q Consensus       158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  204 (228)
                      |++++|.+++   ++ .+..+++|+.|+|++|++.+.+... ...+.
T Consensus       180 L~Ls~N~i~~---l~-~l~~l~~L~~L~L~~N~l~~~p~~~-~~~l~  221 (605)
T 1m9s_A          180 LYLSKNHISD---LR-ALAGLKNLDVLELFSQECLNKPINH-QSNLV  221 (605)
T ss_dssp             EECCSSCCCB---CG-GGTTCTTCSEEECCSEEEECCCCCC-CSSCE
T ss_pred             EECcCCCCCC---Ch-HHccCCCCCEEEccCCcCcCCcccc-cccEE
Confidence            9999999985   44 5889999999999999998765544 44443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=2.8e-18  Score=133.51  Aligned_cols=147  Identities=26%  Similarity=0.264  Sum_probs=96.4

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG  119 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~  119 (228)
                      -+.++.+++.+.. +|..+  .++|++|+  +++|.+..+ | .+..+++|+.|++++|.++ .+|..            
T Consensus        21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~------------   82 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAGI--PTNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVG------------   82 (229)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT------------
T ss_pred             CCEeEccCCCcCc-cCCCC--CCCCCEEE--cCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChh------------
Confidence            3456666666654 34333  26677777  777777544 3 6677777777777777775 34422            


Q ss_pred             ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccc
Q 041723          120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV  199 (228)
Q Consensus       120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~  199 (228)
                          .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++   .+|..+..+++|++|++++|.+++..+.. 
T Consensus        83 ----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~~~~-  154 (229)
T 3e6j_A           83 ----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPHGA-  154 (229)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---SCCTTGGGCTTCSEEECCSSCCCCCCTTT-
T ss_pred             ----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---ccCcccccCCCCCEEECCCCcCCccCHHH-
Confidence                2345667777777777777544445667777777777777776   56666777777777777777777665555 


Q ss_pred             cCCCCCccccccccc
Q 041723          200 NTNLPNFTIIGSVHE  214 (228)
Q Consensus       200 ~~~l~~L~~l~l~~n  214 (228)
                      +..+++|+.+++++|
T Consensus       155 ~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTCTTCCEEECTTS
T ss_pred             HhCCCCCCEEEeeCC
Confidence            677777777774444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=7.7e-19  Score=154.59  Aligned_cols=138  Identities=25%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             CCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723           41 NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT  118 (228)
Q Consensus        41 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~  118 (228)
                      .+++||+++|.+++..+.+|..+++|++|+  +++|.+..+|  .|.++++|++|++++|+++ .+|.            
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~--Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~------------  117 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLD--LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL------------  117 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEE--CTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECG------------
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEE--CCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCH------------
Confidence            566666666666655555666666666666  6666665554  4566666666666666665 2231            


Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                          ..++++++|++|++++|.+++..+..|+.+++|+.|++++|.++.. ..|..+..+++|++|++++|++++..+..
T Consensus       118 ----~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          118 ----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             ----GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             ----HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCcccccccccc
Confidence                1244555666666666666543334456666666666666665531 34455555666666666666665554444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=2.6e-19  Score=148.38  Aligned_cols=210  Identities=16%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             cCCcccccchhhhcccccccccccCCCChH--------HHHhccC-CCCeeecCCccCCCCcchhccCC-----cchHHH
Q 041723            4 HGTRKKKIATAAYGTASNAMKTLLQSPSLA--------NLAEKLA-NLKVLHLGQVNTASTVPYASANL-----SSLFSL   69 (228)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--------~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L   69 (228)
                      +.+.+....+..+....++++|++++|.+.        +.+..++ +|++|++++|.+.+..+..+..+     ++|++|
T Consensus         6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A            6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL   85 (362)
T ss_dssp             CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence            344555555555555555666666666521        3445555 56666666666655545444443     556666


Q ss_pred             HHhhhhcCCCCCc--c----ccCC-CCCcEEEeeCCcCCCCCCChhhcc-----cc-------cccccc----ccchhhh
Q 041723           70 LSLIAYCKENFLP--S----LGNL-TKLNDLYLFGNDFSGKVPDSLGDL-----LQ-------LNYLTG----EILVEIR  126 (228)
Q Consensus        70 ~~~l~~~~~~~~p--~----~~~l-~~L~~L~l~~n~l~~~~p~~~~~l-----~~-------~~~l~~----~~~~~~~  126 (228)
                      +  +++|.++..+  .    +..+ ++|++|++++|.+++..+..++..     +.       .+.+.+    .++..+.
T Consensus        86 ~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           86 N--LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             E--CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             E--CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            6  6666663222  2    2233 556666666666553332222211     11       122221    2223333


Q ss_pred             cCC-CCCEEeccCCcccccCcccc----ccC-CCCCEEEccCCccccCC--CcchhhhcC-CCCCEEEccCCccccccCc
Q 041723          127 KLT-QLHILRLAENQLEGSVPSSI----FEL-RNLRALDLSDNNLSGTG--DLNMVLLNL-ESLTALVLSSNKLSLLAGT  197 (228)
Q Consensus       127 ~l~-~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~--~~p~~~~~l-~~L~~L~L~~n~l~~~~~~  197 (228)
                      .++ +|++|++++|.+.+..+..+    ..+ ++|+.|++++|.+++..  .++..+... ++|++|++++|.+++..+.
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  243 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE  243 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence            333 56666666666554433222    223 35666666666555310  133334332 3555555555555543221


Q ss_pred             ---cccCCCCCcccccccccc
Q 041723          198 ---TVNTNLPNFTIIGSVHET  215 (228)
Q Consensus       198 ---~~~~~l~~L~~l~l~~n~  215 (228)
                         ..+..+++|++|++++|.
T Consensus       244 ~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          244 NLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHhcCCCccEEEeccCC
Confidence               012334444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.8e-18  Score=133.88  Aligned_cols=147  Identities=22%  Similarity=0.268  Sum_probs=108.0

Q ss_pred             ccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCC
Q 041723           24 KTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGN   98 (228)
Q Consensus        24 ~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n   98 (228)
                      .+++.++.   +|..+.  +.+++|++++|.+.+..+..|..+++|++|+  +++|.+..+ | .+.++++|++|++++|
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~--Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRID--LSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEE--CCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            44555544   444433  5788888888888776666788888888888  888888555 4 7788888888888888


Q ss_pred             cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723           99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .++ .+|..                .+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++  ..+..+..+
T Consensus        91 ~l~-~l~~~----------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l  151 (220)
T 2v9t_B           91 KIT-ELPKS----------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPL  151 (220)
T ss_dssp             CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTC
T ss_pred             cCC-ccCHh----------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE--ECHHHHhCC
Confidence            887 44533                24567788888888888886667778888888888888888875  444567778


Q ss_pred             CCCCEEEccCCcccc
Q 041723          179 ESLTALVLSSNKLSL  193 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~  193 (228)
                      ++|+++++++|++..
T Consensus       152 ~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          152 RAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             CCCCEEEeCCCCcCC
Confidence            888888888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.1e-18  Score=138.60  Aligned_cols=161  Identities=21%  Similarity=0.220  Sum_probs=136.5

Q ss_pred             CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN   79 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~   79 (228)
                      ++++.+..+.  .+..+++++++++++|.   ++ .+..+++|++|++++|.+.+..+  +..+++|++|+  +++|.+.
T Consensus        26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~--L~~N~l~   98 (263)
T 1xeu_A           26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS--VNRNRLK   98 (263)
T ss_dssp             HTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE--CCSSCCS
T ss_pred             hcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE--CCCCccC
Confidence            3456666665  57888999999999997   44 78899999999999999987655  89999999999  9999998


Q ss_pred             CCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEE
Q 041723           80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALD  159 (228)
Q Consensus        80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  159 (228)
                      .+|.+.. ++|++|++++|.+++ ++                  .+..+++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus        99 ~l~~~~~-~~L~~L~L~~N~l~~-~~------------------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           99 NLNGIPS-ACLSRLFLDNNELRD-TD------------------SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLD  156 (263)
T ss_dssp             CCTTCCC-SSCCEEECCSSCCSB-SG------------------GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred             CcCcccc-CcccEEEccCCccCC-Ch------------------hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence            8885555 999999999999983 22                  35678999999999999985 44 688999999999


Q ss_pred             ccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723          160 LSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG  196 (228)
Q Consensus       160 l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  196 (228)
                      +++|.+++   + ..+..+++|+.|++++|+++..+.
T Consensus       157 L~~N~i~~---~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          157 LHGNEITN---T-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CTTSCCCB---C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCCCcCcc---h-HHhccCCCCCEEeCCCCcccCCcc
Confidence            99999986   3 668889999999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=2e-19  Score=157.24  Aligned_cols=175  Identities=20%  Similarity=0.219  Sum_probs=135.5

Q ss_pred             cccccccccccCCCC---hHHHHhccCCCCeeecCCcc-------------CCCCcchhccCCcchHHHHH---------
Q 041723           17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVN-------------TASTVPYASANLSSLFSLLS---------   71 (228)
Q Consensus        17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~~---------   71 (228)
                      ...++++.|++++|.   +|+.++++++|++|++++|.             ..+..|..++.+++|+.|+.         
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            456788899999987   78999999999999997764             45566777777777776640         


Q ss_pred             ---hhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723           72 ---LIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS  148 (228)
Q Consensus        72 ---~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  148 (228)
                         .+.+|.+..+|.    ..|+.|++++|.++ .+|.                  ++.+++|+.|++++|.++ .+|..
T Consensus       426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~-~lp~------------------~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLT-VLCH------------------LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             HHHHHHHHHHHHHHH----TTCSEEECTTSCCS-SCCC------------------GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             hhhhhhcccccccCc----cCceEEEecCCCCC-CCcC------------------ccccccCcEeecCccccc-ccchh
Confidence               033334333331    24889999999998 3553                  456778889999999888 77888


Q ss_pred             cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc-CccccCCCCCcccccccccccccCc
Q 041723          149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA-GTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      ++.+++|+.|++++|.++   .+| .+..+++|+.|+|++|.+++.. |.. +..+++|++|++++|.+++.+
T Consensus       482 ~~~l~~L~~L~Ls~N~l~---~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          482 LAALRCLEVLQASDNALE---NVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGGCTTCCEEECCSSCCC---CCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred             hhcCCCCCEEECCCCCCC---CCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc
Confidence            888899999999999888   456 6888888999999999988876 777 888889999999988888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=1.2e-19  Score=148.45  Aligned_cols=202  Identities=17%  Similarity=0.156  Sum_probs=134.8

Q ss_pred             hhhhccc--ccccccccCCCCh---HHHHhccCCCCeeecCCccCCCC-cchhccCCcchHHHHHhhhhcCCC-CCc-cc
Q 041723           13 TAAYGTA--SNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTAST-VPYASANLSSLFSLLSLIAYCKEN-FLP-SL   84 (228)
Q Consensus        13 ~~~~~~l--~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~-~~p-~~   84 (228)
                      +..++.+  .+++.+++.++.+   +..+..+++|++|++++|.+.+. .+..+..+++|++|+  +++|.+. ..+ .+
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~--L~~~~l~~~~~~~l  138 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS--LEGLRLSDPIVNTL  138 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE--CTTCBCCHHHHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe--CcCcccCHHHHHHH
Confidence            4455555  6778888887763   33455678888888888887655 677788888888888  8888873 455 77


Q ss_pred             cCCCCCcEEEeeCC-cCCC-CCCChhhcccccccc--------ccc-cchhhhcCC-CCCEEeccCCc--cc-ccCcccc
Q 041723           85 GNLTKLNDLYLFGN-DFSG-KVPDSLGDLLQLNYL--------TGE-ILVEIRKLT-QLHILRLAENQ--LE-GSVPSSI  149 (228)
Q Consensus        85 ~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~~~~l--------~~~-~~~~~~~l~-~L~~L~ls~n~--l~-~~~~~~~  149 (228)
                      +.+++|++|++++| .+++ .++..+..++++..+        ++. ++..++.++ +|++|++++|.  ++ +.++..+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            77888888888888 5653 244445555543322        221 455566777 78888888773  33 2345556


Q ss_pred             ccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCc-cccccCccccCCCCCcccccccccccccCc
Q 041723          150 FELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNK-LSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      ..+++|+.|++++|. +++  ..+..+..+++|++|++++|. +....... +.++++|++|++++| +++..
T Consensus       219 ~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~-i~~~~  287 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI-VPDGT  287 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS-SCTTC
T ss_pred             hhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc-cCHHH
Confidence            677788888888877 554  556667777788888887774 33222224 566778888887777 55443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=7.5e-20  Score=152.81  Aligned_cols=202  Identities=18%  Similarity=0.209  Sum_probs=153.1

Q ss_pred             hhhcccccccccccCCCCh--------HHHHhccCCCCeeecCCccC---CCCcchhc-------cCCcchHHHHHhhhh
Q 041723           14 AAYGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNT---ASTVPYAS-------ANLSSLFSLLSLIAY   75 (228)
Q Consensus        14 ~~~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~~~l~~   75 (228)
                      ..+..++++++|++++|.+        +..+..+++|++|++++|.+   .+.+|..+       ..+++|++|+  +++
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~--Ls~  103 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR--LSD  103 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE--CCS
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE--CCC
Confidence            4567778999999999973        23466899999999999744   34455554       6889999999  999


Q ss_pred             cCCCC-----Cc-cccCCCCCcEEEeeCCcCCCCCCChhhc----c---------ccc-------cccc-cccc---hhh
Q 041723           76 CKENF-----LP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD----L---------LQL-------NYLT-GEIL---VEI  125 (228)
Q Consensus        76 ~~~~~-----~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~----l---------~~~-------~~l~-~~~~---~~~  125 (228)
                      |.++.     +| .+..+++|++|++++|.+++..+..++.    +         +.+       +.+. +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99954     66 7888999999999999986333333322    2         342       3333 2333   466


Q ss_pred             hcCCCCCEEeccCCcccc-----cCccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccc----
Q 041723          126 RKLTQLHILRLAENQLEG-----SVPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLL----  194 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~----  194 (228)
                      ..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+++.  ..+|..+..+++|++|+|++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            788999999999999873     2343778999999999999998510  16788889999999999999999875    


Q ss_pred             cCcccc--CCCCCccccccccccccc
Q 041723          195 AGTTVN--TNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       195 ~~~~~~--~~l~~L~~l~l~~n~~~~  218 (228)
                      ++.. +  ..+++|++|++++|.+++
T Consensus       264 l~~~-l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          264 VVDA-FSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHH-HHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHH-HhhccCCCeEEEECcCCcCCH
Confidence            3333 4  348999999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.75  E-value=2.1e-19  Score=148.95  Aligned_cols=213  Identities=17%  Similarity=0.171  Sum_probs=156.7

Q ss_pred             CCcCCcccccch----hhhcccc-cccccccCCCCh----HHHHhcc-----CCCCeeecCCccCCCCcchhccC----C
Q 041723            2 WHHGTRKKKIAT----AAYGTAS-NAMKTLLQSPSL----ANLAEKL-----ANLKVLHLGQVNTASTVPYASAN----L   63 (228)
Q Consensus         2 ~~~~~~~~~~~~----~~~~~l~-~l~~l~l~~~~l----~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~----l   63 (228)
                      .+++|++.....    ..+..++ +|++|++++|.+    +..+..+     ++|++|++++|.+++..+..+..    +
T Consensus        28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  107 (362)
T 3goz_A           28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI  107 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence            567888888887    7788888 899999999985    3445554     89999999999998776664444    4


Q ss_pred             -cchHHHHHhhhhcCCCCCc--c----ccC-CCCCcEEEeeCCcCCCCCCChh----hccc-c-------ccccccccch
Q 041723           64 -SSLFSLLSLIAYCKENFLP--S----LGN-LTKLNDLYLFGNDFSGKVPDSL----GDLL-Q-------LNYLTGEILV  123 (228)
Q Consensus        64 -~~L~~L~~~l~~~~~~~~p--~----~~~-l~~L~~L~l~~n~l~~~~p~~~----~~l~-~-------~~~l~~~~~~  123 (228)
                       ++|++|+  +++|.++..+  .    +.. ..+|++|++++|.+++..+..+    ..++ .       .+.+.+..+.
T Consensus       108 ~~~L~~L~--Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          108 PFTITVLD--LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             CTTCCEEE--CCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CCCccEEE--CcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence             8999999  9999995554  3    333 3689999999999885333332    2222 2       3444444443


Q ss_pred             ----hhhcC-CCCCEEeccCCccccc----Ccccccc-CCCCCEEEccCCccccCCCcc----hhhhcCCCCCEEEccCC
Q 041723          124 ----EIRKL-TQLHILRLAENQLEGS----VPSSIFE-LRNLRALDLSDNNLSGTGDLN----MVLLNLESLTALVLSSN  189 (228)
Q Consensus       124 ----~~~~l-~~L~~L~ls~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~~p----~~~~~l~~L~~L~L~~n  189 (228)
                          .+..+ ++|++|++++|.+.+.    ++..+.. .++|+.|++++|.+++  ..+    ..+..+++|++|++++|
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccC
Confidence                34455 5999999999999853    3445555 4599999999999986  333    34567789999999999


Q ss_pred             cccccc-------CccccCCCCCcccccccccccccC
Q 041723          190 KLSLLA-------GTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       190 ~l~~~~-------~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      .+.+..       +.. +.++++|+++++++|.+.+.
T Consensus       264 ~l~~i~~~~~~~l~~~-~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          264 IVKNMSKEQCKALGAA-FPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHTTCCHHHHHHHHTT-STTCCEEEEECTTSCBCCGG
T ss_pred             CccccCHHHHHHHHHH-hccCCceEEEecCCCcCCCc
Confidence            955432       234 67889999999999999876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=3e-18  Score=146.24  Aligned_cols=196  Identities=19%  Similarity=0.198  Sum_probs=102.4

Q ss_pred             CcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP   82 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p   82 (228)
                      +++|++..++  .++.+++|+++++++|.+...-....+|++|++++|.+. .+| .+..+++|++|+  +++|.+..+|
T Consensus       180 L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~--l~~N~l~~l~  253 (454)
T 1jl5_A          180 AGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIY--ADNNLLKTLP  253 (454)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE--CCSSCCSSCC
T ss_pred             CcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEE--CCCCcCCccc
Confidence            3445555543  355666666666666653221111235666666666655 344 366666666666  6666665555


Q ss_pred             cccCCCCCcEEEeeCCcCCCCCCChhhcccc----cccccc--ccchhh-------------hcC-CCCCEEeccCCccc
Q 041723           83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTG--EILVEI-------------RKL-TQLHILRLAENQLE  142 (228)
Q Consensus        83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~--~~~~~~-------------~~l-~~L~~L~ls~n~l~  142 (228)
                      ..  +++|+.|++++|.++ .+|..+..+..    .+.+.+  ..|..+             ..+ ++|+.|++++|.+.
T Consensus       254 ~~--~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          254 DL--PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI  330 (454)
T ss_dssp             SC--CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred             cc--ccccCEEECCCCccc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence            21  255666666666665 24433322222    122222  122111             122 46777777777776


Q ss_pred             ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc--ccCccccCCC-------------CCcc
Q 041723          143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL--LAGTTVNTNL-------------PNFT  207 (228)
Q Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l-------------~~L~  207 (228)
                      + +|..   +++|+.|++++|.++   .+|.   .+++|++|++++|++++  ..|.. +..+             ++|+
T Consensus       331 ~-lp~~---~~~L~~L~L~~N~l~---~lp~---~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~  399 (454)
T 1jl5_A          331 E-LPAL---PPRLERLIASFNHLA---EVPE---LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLK  399 (454)
T ss_dssp             C-CCCC---CTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------
T ss_pred             c-cccc---CCcCCEEECCCCccc---cccc---hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCC
Confidence            3 5543   577888888888887   4555   36788999999999888  55665 6555             7888


Q ss_pred             ccccccccccc
Q 041723          208 IIGSVHETLAS  218 (228)
Q Consensus       208 ~l~l~~n~~~~  218 (228)
                      +|++++|.+++
T Consensus       400 ~L~ls~N~l~~  410 (454)
T 1jl5_A          400 QLHVETNPLRE  410 (454)
T ss_dssp             -----------
T ss_pred             EEECCCCcCCc
Confidence            99999888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=2e-18  Score=152.21  Aligned_cols=81  Identities=23%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccc
Q 041723          129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTI  208 (228)
Q Consensus       129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  208 (228)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++   .+|.   .+++|+.|++++|.++. +|.. +.++++|+.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~---~lp~---~~~~L~~L~Ls~N~L~~-lp~~-l~~l~~L~~  288 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT---SLPM---LPSGLLSLSVYRNQLTR-LPES-LIHLSSETT  288 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCCCS-CCGG-GGGSCTTCE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC---cCCc---ccccCcEEeCCCCCCCc-CCHH-HhhccccCE
Confidence            678888888888873 55   45678888899888887   4555   56789999999999984 4666 888999999


Q ss_pred             ccccccccccCcc
Q 041723          209 IGSVHETLASSHI  221 (228)
Q Consensus       209 l~l~~n~~~~~~~  221 (228)
                      |++++|.+++...
T Consensus       289 L~L~~N~l~~~~~  301 (622)
T 3g06_A          289 VNLEGNPLSERTL  301 (622)
T ss_dssp             EECCSCCCCHHHH
T ss_pred             EEecCCCCCCcCH
Confidence            9999999876443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=2.5e-18  Score=146.69  Aligned_cols=117  Identities=26%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCC
Q 041723           64 SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAEN  139 (228)
Q Consensus        64 ~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n  139 (228)
                      ++|++|+  +++|.+..+|.++.+++|++|++++|.++ .+|..+..+..    .+.+.+ +| .++.+++|++|++++|
T Consensus       131 ~~L~~L~--L~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLG--VSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEE--CCSSCCSSCCCCTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEE--CcCCCCCCCcccCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence            3566666  66666655666666667777777777666 35544433333    223333 33 3556666666666666


Q ss_pred             cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723          140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~  193 (228)
                      .+.+ +|..   .++|+.|++++|.++   .+|. +..+++|++|++++|++++
T Consensus       206 ~l~~-l~~~---~~~L~~L~l~~n~l~---~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          206 SLKK-LPDL---PLSLESIVAGNNILE---ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSS-CCCC---CTTCCEEECCSSCCS---SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             cCCc-CCCC---cCcccEEECcCCcCC---cccc-cCCCCCCCEEECCCCcCCc
Confidence            6653 3332   135555566555555   3443 5556666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.4e-18  Score=131.15  Aligned_cols=149  Identities=18%  Similarity=0.159  Sum_probs=115.2

Q ss_pred             cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcc-hhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee
Q 041723           23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVP-YASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF   96 (228)
Q Consensus        23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~   96 (228)
                      +.++++++.   +|..+.  ..+++|++++|.+++..+ ..+..+++|++|+  +++|.+..++  .+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~--L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKIN--FSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEE--CCCCcCCEECHHHhCCCCCCCEEECC
Confidence            456676665   454443  356888999988877644 4578888899988  9999886665  68888999999999


Q ss_pred             CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh
Q 041723           97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL  176 (228)
Q Consensus        97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~  176 (228)
                      +|.+++ ++.                ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++  ..|..+.
T Consensus        90 ~N~l~~-~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~  150 (220)
T 2v70_A           90 SNRLEN-VQH----------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFD  150 (220)
T ss_dssp             SSCCCC-CCG----------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTT
T ss_pred             CCccCc-cCH----------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhc
Confidence            998873 332                235677888999999999887667788888899999999998886  5577888


Q ss_pred             cCCCCCEEEccCCccccc
Q 041723          177 NLESLTALVLSSNKLSLL  194 (228)
Q Consensus       177 ~l~~L~~L~L~~n~l~~~  194 (228)
                      .+++|+++++++|++...
T Consensus       151 ~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TCTTCCEEECCSCCEECS
T ss_pred             CCCCCCEEEecCcCCcCC
Confidence            888899999999988653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=6.2e-18  Score=128.52  Aligned_cols=151  Identities=18%  Similarity=0.179  Sum_probs=125.0

Q ss_pred             hhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCC-Cc-cccCCCC
Q 041723           15 AYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF-LP-SLGNLTK   89 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~-~p-~~~~l~~   89 (228)
                      ..+.++++++++++++.   +| .+..+++|++|++++|.+..  +..+..+++|++|+  +++|.+.. .+ .++.+++
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~--l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR--IMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEE--EECTTCBGGGSCCCTTCTT
T ss_pred             ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEE--eECCccCcccChhhcCCCC
Confidence            34677899999999997   45 68899999999999997654  45788999999999  99999954 45 8999999


Q ss_pred             CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCc-ccccCccccccCCCCCEEEccCCccccC
Q 041723           90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ-LEGSVPSSIFELRNLRALDLSDNNLSGT  168 (228)
Q Consensus        90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~  168 (228)
                      |++|++++|.+++..                 |..++.+++|++|++++|. +. .+| .+..+++|+.|++++|.+++ 
T Consensus       114 L~~L~Ls~n~i~~~~-----------------~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          114 LTLLDISHSAHDDSI-----------------LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             CCEEECCSSBCBGGG-----------------HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred             CCEEEecCCccCcHh-----------------HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-
Confidence            999999999987322                 3456788999999999998 66 566 68999999999999999984 


Q ss_pred             CCcchhhhcCCCCCEEEccCCcccc
Q 041723          169 GDLNMVLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       169 ~~~p~~~~~l~~L~~L~L~~n~l~~  193 (228)
                        ++ .+..+++|++|++++|++.+
T Consensus       174 --~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          174 --YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             --CT-TGGGCSSCCEEEECBC----
T ss_pred             --hH-HhccCCCCCEEEeeCcccCC
Confidence              44 68889999999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=7.6e-18  Score=147.05  Aligned_cols=172  Identities=24%  Similarity=0.182  Sum_probs=113.2

Q ss_pred             cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeC
Q 041723           21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG   97 (228)
Q Consensus        21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~   97 (228)
                      +++.+++++|.   +|..+  .++|++|++++|.++. +|   ..+++|++|+  +++|.+..+|.+..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~--Ls~N~l~~ip~l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLD--ACDNRLSTLPELPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEE--CCSSCCSCCCCCCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEE--ccCCCCCCcchhhc--CCCEEECCC
Confidence            67777777776   34433  3567777777777763 44   3467777777  77777766665333  677777777


Q ss_pred             CcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcch
Q 041723           98 NDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM  173 (228)
Q Consensus        98 n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~  173 (228)
                      |.+++ +|..+..|..    .|.+.+ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.++   .+|.
T Consensus       130 N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~---~lp~  197 (571)
T 3cvr_A          130 NQLTM-LPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE---SLPA  197 (571)
T ss_dssp             SCCSC-CCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS---SCCC
T ss_pred             CcCCC-CCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC---chhh
Confidence            77773 5552222222    233333 443   45788888888888874 666 54  78888888888887   4555


Q ss_pred             hhhcCCCC-------CEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          174 VLLNLESL-------TALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       174 ~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                       +..  +|       +.|++++|.++.. |.. +..+++|+.|++++|++++.
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~-l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHI-PEN-ILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCC-CGG-GGGSCTTEEEECCSSSCCHH
T ss_pred             -HHH--hhhcccccceEEecCCCcceec-CHH-HhcCCCCCEEEeeCCcCCCc
Confidence             433  56       8888888888854 555 55688888888888888653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.3e-17  Score=124.22  Aligned_cols=126  Identities=24%  Similarity=0.387  Sum_probs=72.4

Q ss_pred             hhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCcccccc
Q 041723           73 IAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE  151 (228)
Q Consensus        73 l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  151 (228)
                      ++++.+..+| .+.  ++++.|++++|.++ .+|.                 .+..+++|+.|++++|.+++..+..|..
T Consensus        17 ~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~-----------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~   76 (193)
T 2wfh_A           17 CSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPK-----------------ELSNYKHLTLIDLSNNRISTLSNQSFSN   76 (193)
T ss_dssp             CTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCG-----------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHH-----------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence            4455555555 222  45666666666665 3332                 2345556666666666666444455666


Q ss_pred             CCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723          152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       152 l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      +++|+.|++++|.+++  ..|..|.++++|++|+|++|.++...+.. +..+++|+.++     +.++++.|+|+
T Consensus        77 l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~N~~~C~c~  143 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGNDISVVPEGA-FNDLSALSHLA-----IGANPLYCDCN  143 (193)
T ss_dssp             CTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEE-----CCSSCEECSGG
T ss_pred             CCCCCEEECCCCccCE--eCHHHhCCCCCCCEEECCCCCCCeeChhh-hhcCccccEEE-----eCCCCeecCCc
Confidence            6666666666666664  33445666666666666666666555555 56666666666     33334455554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.1e-17  Score=125.20  Aligned_cols=128  Identities=23%  Similarity=0.300  Sum_probs=79.8

Q ss_pred             CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-c--ccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723           43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-S--LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG  119 (228)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~--~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~  119 (228)
                      ++++++++.++. +|..+..  ++++|+  +++|.+..++ .  +..+++|++|++++|.+++..|.             
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~--l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------   72 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL--HTTELL--LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-------------   72 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT--TCSEEE--CCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-------------
T ss_pred             CEEEcCCCCcCc-CccCCCC--CCCEEE--CCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-------------
Confidence            567777776643 4443322  566666  7777765554 2  66667777777777766633332             


Q ss_pred             ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                          .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++  ..|..+..+++|+++++++|++.+.
T Consensus        73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe--eCHHHhhcCCCCCEEEeCCCCccCc
Confidence                23455667777777777765555556667777777777777665  4556666666777777777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=3.1e-19  Score=151.96  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=49.4

Q ss_pred             cCCcccccchhh-hcccccccccccCCCCh--------HHHHhccCCCCeeecCCccCCCCcchhc-cCCc----chHHH
Q 041723            4 HGTRKKKIATAA-YGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNTASTVPYAS-ANLS----SLFSL   69 (228)
Q Consensus         4 ~~~~~~~~~~~~-~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~----~L~~L   69 (228)
                      +++++....... +..+++++++++++|.+        ++.+..+++|++|++++|.+....+..+ ..++    +|++|
T Consensus        11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L   90 (461)
T 1z7x_W           11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL   90 (461)
T ss_dssp             ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred             hhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE
Confidence            344444433332 55556666666666652        3345555666666666665543322222 2233    46666


Q ss_pred             HHhhhhcCCC-----CCc-cccCCCCCcEEEeeCCcCC
Q 041723           70 LSLIAYCKEN-----FLP-SLGNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        70 ~~~l~~~~~~-----~~p-~~~~l~~L~~L~l~~n~l~  101 (228)
                      +  +++|.+.     .++ .+..+++|++|++++|.++
T Consensus        91 ~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           91 S--LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             E--CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             E--ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            6  6666653     234 5555666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=6.6e-19  Score=153.96  Aligned_cols=184  Identities=18%  Similarity=0.189  Sum_probs=143.4

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCC-----------------hHHHHhccCCCCeee-cCCccCCCCcc-----h
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS-----------------LANLAEKLANLKVLH-LGQVNTASTVP-----Y   58 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~-----------------l~~~~~~l~~L~~L~-l~~n~~~~~~~-----~   58 (228)
                      .+++|+++.+ |..++.+++|+.++++++.                 .|+.+..+++|+.|+ ++.|.+.....     .
T Consensus       355 ~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n  433 (567)
T 1dce_A          355 ELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN  433 (567)
T ss_dssp             CCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             cCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence            4556666654 6789999999999986652                 356788888899988 55554321100     0


Q ss_pred             hccCC--cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEec
Q 041723           59 ASANL--SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL  136 (228)
Q Consensus        59 ~~~~l--~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~l  136 (228)
                      .+..+  ..|+.|+  +++|.+..+|.++.+++|+.|++++|.++ .+|..                 ++.+++|+.|++
T Consensus       434 ~i~~l~~~~L~~L~--Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~-----------------~~~l~~L~~L~L  493 (567)
T 1dce_A          434 SVLKMEYADVRVLH--LAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPA-----------------LAALRCLEVLQA  493 (567)
T ss_dssp             HHHHHHHTTCSEEE--CTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGG-----------------GGGCTTCCEEEC
T ss_pred             cccccCccCceEEE--ecCCCCCCCcCccccccCcEeecCccccc-ccchh-----------------hhcCCCCCEEEC
Confidence            11111  2477888  99999988998999999999999999998 66644                 567889999999


Q ss_pred             cCCcccccCccccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEEccCCccccccCcc--ccCCCCCccccc
Q 041723          137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALVLSSNKLSLLAGTT--VNTNLPNFTIIG  210 (228)
Q Consensus       137 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~l~  210 (228)
                      ++|.+++ +| .++.+++|+.|++++|.+++  .. |..+..+++|+.|++++|++++.++..  .+..+++|+.|+
T Consensus       494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCC-CG-GGTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC--CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            9999995 77 79999999999999999996  44 889999999999999999999876542  133478888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=4.6e-19  Score=150.94  Aligned_cols=201  Identities=17%  Similarity=0.115  Sum_probs=113.0

Q ss_pred             hhcccccccccccCCCChHH----HHh-----ccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhcCCCCC
Q 041723           15 AYGTASNAMKTLLQSPSLAN----LAE-----KLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYCKENFL   81 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~~----~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~~~~~~   81 (228)
                      .+..+++|+++++++|.+.+    .+.     ..++|++|++++|.++..    ++..+..+++|++|+  +++|.++..
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~--Ls~n~l~~~  242 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA--LGSNKLGDV  242 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE--CCSSBCHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe--ccCCcCChH
Confidence            34444566666666665321    111     234666666666666543    345555566666666  666666221


Q ss_pred             ------c-cccCCCCCcEEEeeCCcCCCC----CCChhhcccccccc-------ccccchhhhc-----CCCCCEEeccC
Q 041723           82 ------P-SLGNLTKLNDLYLFGNDFSGK----VPDSLGDLLQLNYL-------TGEILVEIRK-----LTQLHILRLAE  138 (228)
Q Consensus        82 ------p-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~~~~l-------~~~~~~~~~~-----l~~L~~L~ls~  138 (228)
                            + .+..+++|+.|++++|.+++.    ++..+..++.+..+       .+..+..+..     .++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                  2 222456677777776666521    33333333332222       2211112221     24677777777


Q ss_pred             Cccccc----CccccccCCCCCEEEccCCccccCCCcchhhhc-----CCCCCEEEccCCcccc----ccCccccCCCCC
Q 041723          139 NQLEGS----VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN-----LESLTALVLSSNKLSL----LAGTTVNTNLPN  205 (228)
Q Consensus       139 n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~l~~  205 (228)
                      |.+++.    ++..+..+++|+.|++++|.+++  ..+..+..     .+.|++|++++|.+++    .++.. +..+++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~  399 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHS  399 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCC
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCcccc--ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCC
Confidence            776643    34455666778888888877765  33333322     5678888888888775    44555 666788


Q ss_pred             cccccccccccccCc
Q 041723          206 FTIIGSVHETLASSH  220 (228)
Q Consensus       206 L~~l~l~~n~~~~~~  220 (228)
                      |++|++++|++++.+
T Consensus       400 L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          400 LRELDLSNNCLGDAG  414 (461)
T ss_dssp             CCEEECCSSSCCHHH
T ss_pred             ccEEECCCCCCCHHH
Confidence            888888888877653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=1e-17  Score=138.19  Aligned_cols=198  Identities=18%  Similarity=0.185  Sum_probs=139.1

Q ss_pred             CCcccccchhhhcccccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCCcc-hhccCCcchHH-HHHhhhhcCC
Q 041723            5 GTRKKKIATAAYGTASNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTASTVP-YASANLSSLFS-LLSLIAYCKE   78 (228)
Q Consensus         5 ~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~~~l~~~~~   78 (228)
                      +++++.++.. +  .+++++|++++|.   +|+ +|..+++|++|++++|.+.+.++ .+|..++++.. +.  +..|++
T Consensus        18 ~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~--~~~N~l   92 (350)
T 4ay9_X           18 ESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKANNL   92 (350)
T ss_dssp             STTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE--EEETTC
T ss_pred             CCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc--ccCCcc
Confidence            4555655432 2  2478999999998   454 68899999999999998876554 56788888765 45  667888


Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccc--------cccccccchhhhcCC-CCCEEeccCCcccccCcc
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL--------NYLTGEILVEIRKLT-QLHILRLAENQLEGSVPS  147 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~--------~~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~  147 (228)
                      ..++  .+..+++|++|++++|.+.+..+..+......        +.+....+..+..+. .++.|++++|.++ .++.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~  171 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN  171 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh
Confidence            7765  78889999999999999984333333332221        222222233444543 5888999999998 5665


Q ss_pred             ccccCCCCCEEEccC-CccccCCCcch-hhhcCCCCCEEEccCCccccccCccccCCCCCccccccc
Q 041723          148 SIFELRNLRALDLSD-NNLSGTGDLNM-VLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSV  212 (228)
Q Consensus       148 ~~~~l~~L~~L~l~~-n~~~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~  212 (228)
                      ......+|+.+++.+ |.++   .+|. .|.++++|++|++++|+++..++.. +.++++|+.++..
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~---~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~  234 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLE---ELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTY  234 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCC---CCCTTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCT
T ss_pred             hhccccchhHHhhccCCccc---CCCHHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCC
Confidence            555667899999975 5565   5654 5788999999999999998776666 6666666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=7.6e-17  Score=142.16  Aligned_cols=178  Identities=22%  Similarity=0.250  Sum_probs=83.7

Q ss_pred             ccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCcc-c--------------
Q 041723           20 SNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-L--------------   84 (228)
Q Consensus        20 ~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~-~--------------   84 (228)
                      +++++|++++|.+...-..+++|++|++++|.+++ +|.   .+++|++|+  +++|.+..+|. +              
T Consensus        61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~--Ls~N~l~~l~~~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELS--IFSNPLTHLPALPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEE--ECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE--CcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence            35555555555422111134555555555555543 222   334444444  44444433332 0              


Q ss_pred             ---cCCCCCcEEEeeCCcCCCCCCChhhccccc----cccccccchhhhcCCCCCEEeccCCcccccCccccc-------
Q 041723           85 ---GNLTKLNDLYLFGNDFSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-------  150 (228)
Q Consensus        85 ---~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~----~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-------  150 (228)
                         ..+++|++|++++|.++ .+|..+..+..+    |.+.+ +|   ..+++|+.|++++|.+++ +|..+.       
T Consensus       135 ~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L  208 (622)
T 3g06_A          135 SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWA  208 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEEC
T ss_pred             cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEEC
Confidence               01255556666666555 333333332221    11211 22   223566666676666653 332211       


Q ss_pred             ----------cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723          151 ----------ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       151 ----------~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                                .+++|+.|++++|.++   .+|   ..+++|+.|++++|.++..+.     .+++|+.|++++|+++..|
T Consensus       209 ~~N~l~~l~~~~~~L~~L~Ls~N~L~---~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp  277 (622)
T 3g06_A          209 YNNRLTSLPALPSGLKELIVSGNRLT---SLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP  277 (622)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCS---CCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC
T ss_pred             cCCcccccCCCCCCCCEEEccCCccC---cCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC
Confidence                      1244555555555555   233   234556666666666654322     3456667777777766443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=7.1e-17  Score=119.42  Aligned_cols=132  Identities=25%  Similarity=0.231  Sum_probs=76.7

Q ss_pred             cCCCCeeecCCccCC-CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723           39 LANLKVLHLGQVNTA-STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        39 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      .++|++|++++|.+. +.+|..+..+++|++|+  +++|.+..++.+..+++|++|++++|.+++.+|.           
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------   89 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS--LINVGLISVSNLPKLPKLKKLELSENRIFGGLDM-----------   89 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE--EESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEe--CcCCCCCChhhhccCCCCCEEECcCCcCchHHHH-----------
Confidence            467777888777776 45565566666666666  6666664445555666666666666666532221           


Q ss_pred             ccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccCCccccCCCcch----hhhcCCCCCEEEccCCcc
Q 041723          118 TGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSDNNLSGTGDLNM----VLLNLESLTALVLSSNKL  191 (228)
Q Consensus       118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~p~----~~~~l~~L~~L~L~~n~l  191 (228)
                            .++.+++|+.|++++|.+++ ++  ..+..+++|+.|++++|.+++   +|.    .+..+++|++|++++|.+
T Consensus        90 ------~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           90 ------LAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN---LNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ------HHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT---STTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ------HHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc---hHHHHHHHHHhCccCcEecCCCCCh
Confidence                  23345566666666666653 22  445556666666666666653   222    455555666666665555


Q ss_pred             cc
Q 041723          192 SL  193 (228)
Q Consensus       192 ~~  193 (228)
                      ..
T Consensus       160 ~~  161 (168)
T 2ell_A          160 QE  161 (168)
T ss_dssp             CB
T ss_pred             hh
Confidence            43

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=6.5e-17  Score=119.64  Aligned_cols=133  Identities=25%  Similarity=0.316  Sum_probs=114.8

Q ss_pred             CcchHHHHHhhhhcCCC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCC
Q 041723           63 LSSLFSLLSLIAYCKEN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAEN  139 (228)
Q Consensus        63 l~~L~~L~~~l~~~~~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n  139 (228)
                      .++|++|+  +++|.+.  .+| .+..+++|+.|++++|.+++.  .                 .+..+++|++|++++|
T Consensus        23 ~~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-----------------~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           23 PAAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-----------------NLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TTSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-----------------SCCCCSSCCEEEEESC
T ss_pred             cccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-----------------hhccCCCCCEEECcCC
Confidence            46788899  9999996  888 778999999999999998833  2                 3567889999999999


Q ss_pred             cccccCccccccCCCCCEEEccCCccccCCCcc--hhhhcCCCCCEEEccCCccccccC---ccccCCCCCccccccccc
Q 041723          140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALVLSSNKLSLLAG---TTVNTNLPNFTIIGSVHE  214 (228)
Q Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~l~l~~n  214 (228)
                      .+.+.+|..+..+++|+.|++++|.+++   +|  ..+..+++|++|++++|++++..+   .. +..+++|++|++++|
T Consensus        82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           82 RIFGGLDMLAEKLPNLTHLNLSGNKLKD---ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCCSCCCHHHHHCTTCCEEECBSSSCCS---SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH-HTTCSSCCEETTEET
T ss_pred             cCchHHHHHHhhCCCCCEEeccCCccCc---chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH-HHhCccCcEecCCCC
Confidence            9997678878889999999999999985   44  678899999999999999998765   45 889999999999999


Q ss_pred             ccccCc
Q 041723          215 TLASSH  220 (228)
Q Consensus       215 ~~~~~~  220 (228)
                      .+...+
T Consensus       158 ~~~~~~  163 (168)
T 2ell_A          158 EDQEAP  163 (168)
T ss_dssp             TSCBCC
T ss_pred             Chhhcc
Confidence            887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.1e-16  Score=132.57  Aligned_cols=155  Identities=20%  Similarity=0.181  Sum_probs=127.3

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--ccc-CCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLG-NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT  118 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~  118 (228)
                      -+.++.+++.+.. +|..+.  +.++.|+  +++|.+..++  .+. .+++|+.|++++|.+++..+.            
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~--Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------   82 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLD--LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------------   82 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEE--CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT------------
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEE--CCCCCCCccChhhhhhcccccCEEECCCCcCCccChh------------
Confidence            3689999998876 454432  4578889  9999997776  566 899999999999999833222            


Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                           .+..+++|++|++++|.+....+..|..+++|+.|++++|.++.  ..|..+..+++|++|+|++|.+++.++..
T Consensus        83 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           83 -----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             -----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             -----hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence                 35678899999999999996656678999999999999999996  55778999999999999999999876655


Q ss_pred             cc---CCCCCcccccccccccccCcc
Q 041723          199 VN---TNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       199 ~~---~~l~~L~~l~l~~n~~~~~~~  221 (228)
                       +   ..+++|+.|++++|+++..+.
T Consensus       156 -~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          156 -IKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             -TC----CTTCCEEECCSSCCCCCCH
T ss_pred             -hcCcccCCcCCEEECCCCCCCccCH
Confidence             5   579999999999999997664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=4.8e-17  Score=134.19  Aligned_cols=191  Identities=18%  Similarity=0.127  Sum_probs=139.5

Q ss_pred             cccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc--cccCCCCCcE-EEeeC
Q 041723           25 TLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP--SLGNLTKLND-LYLFG   97 (228)
Q Consensus        25 l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p--~~~~l~~L~~-L~l~~   97 (228)
                      ++.+++.   +|..+  .+++++|++++|+++...+.+|.++++|++|+  +++|.+ +.+|  .|.++++++. +.+.+
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~--Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE--ISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEE--EECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEE--CcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4444443   56655  36899999999999876667899999999999  999998 6676  6788998876 55677


Q ss_pred             CcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccC-CcccccCccccccC-CCCCEEEccCCccccC
Q 041723           98 NDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAE-NQLEGSVPSSIFEL-RNLRALDLSDNNLSGT  168 (228)
Q Consensus        98 n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~  168 (228)
                      |+++...|..+..++++..+       ....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++  
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--
Confidence            88885456666666664433       333333444556677787765 45553333445555 46889999999998  


Q ss_pred             CCcchhhhcCCCCCEEEccC-CccccccCccccCCCCCcccccccccccccCcccc
Q 041723          169 GDLNMVLLNLESLTALVLSS-NKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC  223 (228)
Q Consensus       169 ~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  223 (228)
                       .+|.......+++++++.+ |.++...+.. +..+++|++|++++|+++..|...
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N~l~~lp~~~  221 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYG  221 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTSCCCCCCSSS
T ss_pred             -CCChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCCCcCccChhh
Confidence             5666665667899999974 6777665666 899999999999999999876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=1.5e-17  Score=149.39  Aligned_cols=142  Identities=18%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcc
Q 041723           33 ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDL  111 (228)
Q Consensus        33 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  111 (228)
                      ++.+..+..|++|++++|.+. .+|..+..+++|++|+  +++|.+..+| .++.+++|++|++++|.++ .+|..    
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~--Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~----  288 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY--LNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE----  288 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB--CTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS----
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE--eeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh----
Confidence            445666677777777777765 3555555677777777  7777776666 6667777777777777776 44543    


Q ss_pred             ccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCC-CCCEEEccCCc
Q 041723          112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLE-SLTALVLSSNK  190 (228)
Q Consensus       112 ~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~-~L~~L~L~~n~  190 (228)
                                   ++.+++|+.|++++|.+. .+|..|+.+++|+.|++++|.+++  .+|..+.... ....+++++|.
T Consensus       289 -------------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~~l~l~~N~  352 (727)
T 4b8c_D          289 -------------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK--QFLKILTEKSVTGLIFYLRDNR  352 (727)
T ss_dssp             -------------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -------------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC--CChHHHhhcchhhhHHhhccCc
Confidence                         345566777777777776 566667777777777777777775  5555554332 12235667777


Q ss_pred             cccccCcc
Q 041723          191 LSLLAGTT  198 (228)
Q Consensus       191 l~~~~~~~  198 (228)
                      +++.+|..
T Consensus       353 l~~~~p~~  360 (727)
T 4b8c_D          353 PEIPLPHE  360 (727)
T ss_dssp             CCCCCCCC
T ss_pred             ccCcCccc
Confidence            76655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3e-16  Score=113.74  Aligned_cols=109  Identities=24%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             cCCCCeeecCCccCC-CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723           39 LANLKVLHLGQVNTA-STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        39 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      .+++++|++++|.+. +.+|..+..+++|++|+  +++|.+..++.+..+++|++|++++|.+++.+|            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~------------   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS--TINVGLTSIANLPKLNKLKKLELSDNRVSGGLE------------   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE--CTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTH------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEE--CcCCCCCCchhhhcCCCCCEEECCCCcccchHH------------
Confidence            356666777666665 44555555555555555  555555333444445555555555555442222            


Q ss_pred             ccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCCccc
Q 041723          118 TGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus       118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                           ..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++
T Consensus        82 -----~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           82 -----VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             -----HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             -----HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                 1223344455555555554421 1134444445555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=9.1e-17  Score=140.23  Aligned_cols=177  Identities=19%  Similarity=0.178  Sum_probs=137.2

Q ss_pred             CCcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC
Q 041723            2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL   81 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~   81 (228)
                      .++++.+..++...   .++|++|++++|.+...-..+++|++|++++|.+++ +|. +..  +|++|+  +++|.+..+
T Consensus        65 ~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~--Ls~N~l~~l  135 (571)
T 3cvr_A           65 QLNRLNLSSLPDNL---PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLD--VDNNQLTML  135 (571)
T ss_dssp             ECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE--CCSSCCSCC
T ss_pred             EeCCCCCCccCHhH---cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEE--CCCCcCCCC
Confidence            45677777765433   268999999999843211567899999999999987 565 554  899999  999999778


Q ss_pred             ccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCC--
Q 041723           82 PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL--  155 (228)
Q Consensus        82 p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L--  155 (228)
                      |.  .+++|+.|++++|.++ .+|..+..|..    .|.+.+ +|. +.  ++|+.|++++|.++ .+|. +..  +|  
T Consensus       136 p~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~  204 (571)
T 3cvr_A          136 PE--LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH  204 (571)
T ss_dssp             CC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred             CC--cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence            87  6899999999999998 47764333333    344444 665 54  89999999999999 6777 554  77  


Q ss_pred             -----CEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723          156 -----RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN  202 (228)
Q Consensus       156 -----~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  202 (228)
                           +.|++++|.++   .+|..+..+++|+.|++++|++++..|.. +..
T Consensus       205 ~~~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~  252 (571)
T 3cvr_A          205 SEETEIFFRCRENRIT---HIPENILSLDPTCTIILEDNPLSSRIRES-LSQ  252 (571)
T ss_dssp             ---CCEEEECCSSCCC---CCCGGGGGSCTTEEEECCSSSCCHHHHHH-HHH
T ss_pred             ccccceEEecCCCcce---ecCHHHhcCCCCCEEEeeCCcCCCcCHHH-HHH
Confidence                 99999999999   68888888999999999999999887766 544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=1.2e-17  Score=149.96  Aligned_cols=177  Identities=21%  Similarity=0.156  Sum_probs=115.8

Q ss_pred             cchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccC
Q 041723           11 IATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGN   86 (228)
Q Consensus        11 ~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~   86 (228)
                      +.+..+..+.+|+.|+|++|.   +|+.+..+++|++|++++|.++ .+|..+..+++|++|+  +++|.+..+| .++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~--Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD--LSHNRLTSLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEE--CTTSCCSSCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEe--CcCCcCCccChhhcC
Confidence            457778999999999999997   6788889999999999999998 6889999999999999  9999999999 9999


Q ss_pred             CCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCC-CCCEEEccCCcc
Q 041723           87 LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR-NLRALDLSDNNL  165 (228)
Q Consensus        87 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~  165 (228)
                      +++|++|++++|.++ .+|..                 ++.+++|+.|++++|.+.+.+|..+..+. .+..+++++|.+
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~-----------------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWE-----------------FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSS-----------------TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCEEECCCCCCC-ccChh-----------------hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            999999999999997 66654                 56778999999999999987777665432 223467888888


Q ss_pred             ccCCCcchhhhcCCCCCEEEccCC--------ccccccCccccCCCCCcccccccccccc
Q 041723          166 SGTGDLNMVLLNLESLTALVLSSN--------KLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       166 ~~~~~~p~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ++  .+|..      ++.++++.|        .+.+..+.. +..+..++...+++|.+.
T Consensus       354 ~~--~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~-~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          354 EI--PLPHE------RRFIEINTDGEPQREYDSLQQSTEHL-ATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CC--CCCCC------------------------------------------------CCC
T ss_pred             cC--cCccc------cceeEeecccccccccCCccccccch-hhcccccceeeeeccccc
Confidence            76  66654      445556555        222222333 444555566666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=2.3e-16  Score=114.38  Aligned_cols=128  Identities=23%  Similarity=0.271  Sum_probs=105.5

Q ss_pred             CcchHHHHHhhhhcCCC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCC
Q 041723           63 LSSLFSLLSLIAYCKEN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAEN  139 (228)
Q Consensus        63 l~~L~~L~~~l~~~~~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n  139 (228)
                      .++++.|+  +++|.+.  .+| .+..+++|+.|++++|.+++.  .                 .++.+++|++|++++|
T Consensus        16 ~~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-----------------~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           16 PSDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-----------------NLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-----------------TCCCCTTCCEEECCSS
T ss_pred             CccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-----------------hhhcCCCCCEEECCCC
Confidence            36788888  9999996  788 778899999999999998733  1                 3567889999999999


Q ss_pred             cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC---ccccCCCCCcccccccc
Q 041723          140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG---TTVNTNLPNFTIIGSVH  213 (228)
Q Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~l~l~~  213 (228)
                      .+.+.+|..+..+++|+.|++++|.+++. ..+..+..+++|++|++++|++++..+   .. +..+++|+.|++++
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~d  149 (149)
T 2je0_A           75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENV-FKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSCTHHHHHHCTTCCEEECTTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH-HHHCTTCCEETTBC
T ss_pred             cccchHHHHhhhCCCCCEEECCCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHH-HHHCCCcccccCCC
Confidence            99866788788899999999999999841 123678899999999999999988766   45 78899999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=6.9e-16  Score=116.75  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=100.3

Q ss_pred             cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcch-hccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEee
Q 041723           23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLF   96 (228)
Q Consensus        23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~   96 (228)
                      +.++++++.   +|..+..  ++++|++++|.+.+..+. .+..+++|++|+  +++|.+..+ | .+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE--LKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEE--CCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEE--CCCCCCCCcCHhHcCCcccCCEEECC
Confidence            567777775   5554433  899999999998876654 488999999999  999999555 5 88899999999999


Q ss_pred             CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723           97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus        97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                      +|.+++..+.                 .+..+++|++|++++|.+++..|..+..+++|+.+++++|.++.
T Consensus        87 ~N~l~~~~~~-----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNK-----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSS-----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHH-----------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9998843332                 35577889999999999997778888999999999999999886

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=4e-16  Score=116.38  Aligned_cols=132  Identities=16%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             HhccCCCCeeecCCccCCCCcchhccCC-cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723           36 AEKLANLKVLHLGQVNTASTVPYASANL-SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL  114 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  114 (228)
                      +.++.+|++|++++|.+... +. +..+ ++|++|+  +++|.+..++.+..+++|++|++++|.++ .+|..+      
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~--Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~------   83 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAID--FSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGL------   83 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEE--CCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCH------
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEE--CCCCCCCcccccccCCCCCEEECCCCccc-ccCcch------
Confidence            34455666777776666542 32 2222 2555555  55655544455555555555555555554 222211      


Q ss_pred             cccccccchhhhcCCCCCEEeccCCcccccCcc--ccccCCCCCEEEccCCccccCCCcchh----hhcCCCCCEEEccC
Q 041723          115 NYLTGEILVEIRKLTQLHILRLAENQLEGSVPS--SIFELRNLRALDLSDNNLSGTGDLNMV----LLNLESLTALVLSS  188 (228)
Q Consensus       115 ~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~p~~----~~~l~~L~~L~L~~  188 (228)
                                +..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.++   .+|..    +..+++|+.++++.
T Consensus        84 ----------~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           84 ----------DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             ----------HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ----------hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCc
Confidence                      234555555555555554 3343  4555555555555555555   23332    45555555555555


Q ss_pred             Cccc
Q 041723          189 NKLS  192 (228)
Q Consensus       189 n~l~  192 (228)
                      |...
T Consensus       150 n~~~  153 (176)
T 1a9n_A          150 VKLK  153 (176)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            5443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=6.3e-18  Score=128.58  Aligned_cols=156  Identities=22%  Similarity=0.224  Sum_probs=112.6

Q ss_pred             HhccCCCCeeecCCccCCCCcch------hccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhh
Q 041723           36 AEKLANLKVLHLGQVNTASTVPY------ASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLG  109 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~  109 (228)
                      +.....++.++++.+.+.+..|.      .+..+++|++|+  +++|.+..+|.+..+++|++|++++|.++ .+|..  
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~--ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~--   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA--LSTNNIEKISSLSGMENLRILSLGRNLIK-KIENL--   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEE--CSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSH--
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEE--CCCCCCccccccccCCCCCEEECCCCCcc-cccch--
Confidence            45556777777777777666555      777788888888  88888866777777888888888888887 55543  


Q ss_pred             ccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc--hhhhcCCCCCEEEcc
Q 041723          110 DLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALVLS  187 (228)
Q Consensus       110 ~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p--~~~~~l~~L~~L~L~  187 (228)
                                     ++.+++|++|++++|.+++ +| .+..+++|+.|++++|.+++   ++  ..+..+++|++++++
T Consensus        89 ---------------~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~---~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           89 ---------------DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             ---------------HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC---HHHHHHHTTTTTCSEEEEC
T ss_pred             ---------------hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc---hhHHHHHhcCCCCCEEEec
Confidence                           3345678888888888874 45 57788888888888888873   33  367788888888888


Q ss_pred             CCccccccCc---------cccCCCCCccccccccccccc
Q 041723          188 SNKLSLLAGT---------TVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       188 ~n~l~~~~~~---------~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      +|++++..|.         ..+..+++|+.|+  +|.++.
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            8888765443         1156678888776  555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=7.7e-16  Score=114.80  Aligned_cols=135  Identities=19%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             hccCCcchHHHHHhhhhcCCCCCccccCCC-CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEecc
Q 041723           59 ASANLSSLFSLLSLIAYCKENFLPSLGNLT-KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLA  137 (228)
Q Consensus        59 ~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls  137 (228)
                      .+....+|+.|+  +++|.+..+|.+..+. +|++|++++|.+++ ++                  .++.+++|++|+++
T Consensus        14 ~~~~~~~L~~L~--l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~------------------~l~~l~~L~~L~Ls   72 (176)
T 1a9n_A           14 QYTNAVRDRELD--LRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD------------------GFPLLRRLKTLLVN   72 (176)
T ss_dssp             EEECTTSCEEEE--CTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC------------------CCCCCSSCCEEECC
T ss_pred             hcCCcCCceEEE--eeCCCCchhHHhhhcCCCCCEEECCCCCCCc-cc------------------ccccCCCCCEEECC
Confidence            355677888888  9999987778555554 89999999998873 21                  35577889999999


Q ss_pred             CCcccccCccccccCCCCCEEEccCCccccCCCcch--hhhcCCCCCEEEccCCccccccCc---cccCCCCCccccccc
Q 041723          138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM--VLLNLESLTALVLSSNKLSLLAGT---TVNTNLPNFTIIGSV  212 (228)
Q Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~l~l~  212 (228)
                      +|.+++..+..+..+++|+.|++++|.++   .+|.  .+..+++|+++++++|+++.....   . +..+++|+.++++
T Consensus        73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~-~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           73 NNRICRIGEGLDQALPDLTELILTNNSLV---ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV-IYKVPQVRVLDFQ  148 (176)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCC---CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH-HHHCTTCSEETTE
T ss_pred             CCcccccCcchhhcCCCCCEEECCCCcCC---cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH-HHHCCccceeCCC
Confidence            99988543344588899999999999887   5665  678888999999999998865433   3 6778899999988


Q ss_pred             cccccc
Q 041723          213 HETLAS  218 (228)
Q Consensus       213 ~n~~~~  218 (228)
                      .|+...
T Consensus       149 ~n~~~~  154 (176)
T 1a9n_A          149 KVKLKE  154 (176)
T ss_dssp             ECCHHH
T ss_pred             cCCHHH
Confidence            887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=5.8e-15  Score=110.00  Aligned_cols=131  Identities=29%  Similarity=0.301  Sum_probs=87.6

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG  119 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~  119 (228)
                      .+.+++++++++. +|..+  .+++++|+  +++|.+..+|  .+..+++|++|++++|.++ .+|..            
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~------------   70 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG------------   70 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT------------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEE--eCCCcccEeCHHHhcCcccccEEECCCCcce-EeChh------------
Confidence            4677777777765 33322  25677777  8888776665  4677778888888887776 33322            


Q ss_pred             ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723          120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG  196 (228)
Q Consensus       120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  196 (228)
                          .++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++  ..+..+..+++|+++++++|++.+..+
T Consensus        71 ----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           71 ----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCeeccCc
Confidence                23566777888888888775444556777788888888887774  333345667778888888887766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=8.7e-15  Score=110.80  Aligned_cols=126  Identities=24%  Similarity=0.270  Sum_probs=64.7

Q ss_pred             CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccccc
Q 041723           43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEI  121 (228)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~  121 (228)
                      ++++.+++.++. +|..+  .+++++|+  +++|.+..+| .+..+++|+.|++++|.+++..+.               
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~---------------   72 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ---------------   72 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT---------------
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh---------------
Confidence            345555555443 23222  13455555  5555555555 555555666666666655522221               


Q ss_pred             chhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723          122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS  192 (228)
Q Consensus       122 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~  192 (228)
                        .+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.  ..+..+..+++|+++++++|++.
T Consensus        73 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           73 --SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             --TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             --HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence              23345555666666666554444455555666666666665553  22223555555666666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2e-14  Score=107.08  Aligned_cols=109  Identities=28%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723           40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      ++|++|++++|.+.+..+..+..+++|++|+  +++|.+..+|  .+..+++|++|++++|.++ .+|..          
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~----------   94 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLS--LSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNG----------   94 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEE--CCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHH----------
Confidence            5677777777777665555667777777777  7777776555  3566777777777777776 33321          


Q ss_pred             ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723          118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus       118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                            .++.+++|+.|++++|.+++..+..+..+++|+.+++++|.++.
T Consensus        95 ------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           95 ------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                  13456677777777777764333345667777777777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=7.4e-14  Score=103.51  Aligned_cols=109  Identities=27%  Similarity=0.302  Sum_probs=86.2

Q ss_pred             CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccC
Q 041723           89 KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGT  168 (228)
Q Consensus        89 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  168 (228)
                      ..+.+++++|.++ .+|..+                   .++++.|++++|.+++..|..|..+++|+.|++++|.+++ 
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~-------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-   68 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI-------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-   68 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC-------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-
T ss_pred             CCCEEEeCCCCcC-ccCccC-------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-
Confidence            3578899999887 566432                   2578899999999987667778899999999999999885 


Q ss_pred             CCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccccc
Q 041723          169 GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTT  225 (228)
Q Consensus       169 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  225 (228)
                       ..+..|.++++|++|+|++|++++..+.. +..+++|++|++++|.     +.|.|
T Consensus        69 -l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-----~~c~c  118 (170)
T 3g39_A           69 -LPAGVFDKLTQLTQLSLNDNQLKSIPRGA-FDNLKSLTHIWLLNNP-----WDCAC  118 (170)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-----BCTTB
T ss_pred             -cChhhccCCCCCCEEECCCCccCEeCHHH-hcCCCCCCEEEeCCCC-----CCCCc
Confidence             44455788899999999999998877777 8889999999966554     45555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.51  E-value=1.8e-16  Score=138.90  Aligned_cols=207  Identities=19%  Similarity=0.058  Sum_probs=123.3

Q ss_pred             hhhcccccccccccCCCCh-----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh-----------cC
Q 041723           14 AAYGTASNAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY-----------CK   77 (228)
Q Consensus        14 ~~~~~l~~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~-----------~~   77 (228)
                      ..+..+++|++|++++|.+     +..+..+++|++|+++++-....++..+..+++|++|+  +++           +.
T Consensus       287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~--L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR--IERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE--EECCCCSSTTSSTTCC
T ss_pred             HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE--eecCccccccccccCc
Confidence            3445566677777776652     23345666666666663211122233334556666666  662           33


Q ss_pred             CC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhc-cccccc-----------ccc-----ccchhhhcCCCCCEEecc
Q 041723           78 EN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD-LLQLNY-----------LTG-----EILVEIRKLTQLHILRLA  137 (228)
Q Consensus        78 ~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~~~~-----------l~~-----~~~~~~~~l~~L~~L~ls  137 (228)
                      ++  .++ ....+++|+.|++..+.+++..+..++. ++++..           +++     .++..+..+++|++|+++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            32  222 2344677777777766666443333333 333222           222     133335667888888887


Q ss_pred             CCc--ccccCccccc-cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723          138 ENQ--LEGSVPSSIF-ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE  214 (228)
Q Consensus       138 ~n~--l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n  214 (228)
                      +|.  +++..+..+. .+++|+.|++++|.+++. .++..+.++++|++|++++|.+++.........+++|++|++++|
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence            544  4444344443 478899999998888741 345556788899999999998865433321567889999999999


Q ss_pred             ccccCcccc
Q 041723          215 TLASSHIFC  223 (228)
Q Consensus       215 ~~~~~~~~~  223 (228)
                      ++++..+..
T Consensus       524 ~it~~~~~~  532 (592)
T 3ogk_B          524 RASMTGQDL  532 (592)
T ss_dssp             BCCTTCTTG
T ss_pred             cCCHHHHHH
Confidence            988775543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.5e-16  Score=120.94  Aligned_cols=150  Identities=19%  Similarity=0.225  Sum_probs=119.6

Q ss_pred             hcccccccccccCCCC----------hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cc
Q 041723           16 YGTASNAMKTLLQSPS----------LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SL   84 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~----------l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~   84 (228)
                      +....++..+++..+.          +|..+..+++|++|++++|.+.+ +| .+..+++|++|+  +++|.+..+| .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~--l~~n~l~~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILS--LGRNLIKKIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEE--EEEEEECSCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEE--CCCCCcccccchh
Confidence            3444455555555443          34589999999999999999987 55 889999999999  9999998898 66


Q ss_pred             cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccC
Q 041723           85 GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSD  162 (228)
Q Consensus        85 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~  162 (228)
                      ..+++|++|++++|.+++ +|                  .+..+++|+.|++++|.+.+ ++  ..+..+++|+.+++++
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~------------------~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS------------------GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH------------------HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECS
T ss_pred             hcCCcCCEEECcCCcCCc-CC------------------ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecC
Confidence            778999999999999983 33                  25567889999999999984 33  3688999999999999


Q ss_pred             CccccCCCcch----------hhhcCCCCCEEEccCCcccc
Q 041723          163 NNLSGTGDLNM----------VLLNLESLTALVLSSNKLSL  193 (228)
Q Consensus       163 n~~~~~~~~p~----------~~~~l~~L~~L~L~~n~l~~  193 (228)
                      |.+++  ..|.          .+..+++|+.|+  +++++.
T Consensus       150 N~l~~--~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          150 NPLYN--DYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CHHHH--HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             Ccccc--ccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99975  4333          377899999886  777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=2.2e-13  Score=101.36  Aligned_cols=105  Identities=25%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723           90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG  169 (228)
Q Consensus        90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  169 (228)
                      -+.+++++|+++ .+|..+                   .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++  
T Consensus        14 ~~~l~~~~n~l~-~iP~~~-------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--   71 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI-------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--   71 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC-------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred             CcEEEeCCCCCC-ccCCCc-------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--
Confidence            478999999987 677542                   2678999999999997768889999999999999999985  


Q ss_pred             CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ..+..+.++++|++|+|++|++++.++.. +..+++|++|++++|.+.
T Consensus        72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGA-FDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCBC
T ss_pred             cChhHhCCcchhhEEECCCCccceeCHHH-hccccCCCEEEeCCCCcc
Confidence            33445688999999999999999887777 889999999996666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=3.2e-14  Score=116.23  Aligned_cols=196  Identities=15%  Similarity=0.146  Sum_probs=139.5

Q ss_pred             cccccccccCCCChH---HHHhc-cCCCCeeecCCccCC--------------------CCcchhccC--------Ccch
Q 041723           19 ASNAMKTLLQSPSLA---NLAEK-LANLKVLHLGQVNTA--------------------STVPYASAN--------LSSL   66 (228)
Q Consensus        19 l~~l~~l~l~~~~l~---~~~~~-l~~L~~L~l~~n~~~--------------------~~~~~~~~~--------l~~L   66 (228)
                      +.+++.|.+.++--.   ..+.. +++|++||+++|++.                    .....+|.+        +++|
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            456777777765311   23334 788999999999887                    223456777        9999


Q ss_pred             HHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc--------------------------
Q 041723           67 FSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT--------------------------  118 (228)
Q Consensus        67 ~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~--------------------------  118 (228)
                      +.+.  +.+ .+..++  .|.++++|+.+++..|.+....+..|........+.                          
T Consensus       104 ~~l~--L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          104 EKVI--LSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             CC-C--BCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             cEEE--CCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            9999  988 887777  899999999999999987522222222211100000                          


Q ss_pred             -------cccch---------------------------hh-hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCC
Q 041723          119 -------GEILV---------------------------EI-RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDN  163 (228)
Q Consensus       119 -------~~~~~---------------------------~~-~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (228)
                             +.++.                           .+ ..+++|+.+++++|.++...+..|..+.+|+.+++.+|
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                   00000                           00 13789999999999998544567999999999999998


Q ss_pred             ccccCCCcchhhhcCCCCC-EEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          164 NLSGTGDLNMVLLNLESLT-ALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       164 ~~~~~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                       ++.  .-+..|.++.+|+ .+++.+ .++...+.. |.+|++|+.++++.|.++..+-.
T Consensus       261 -i~~--I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          261 -LKT--IGQRVFSNCGRLAGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             -CCE--ECTTTTTTCTTCCEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSCCCEECTT
T ss_pred             -cce--ehHHHhhCChhccEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCccCccchh
Confidence             653  3456789999999 999988 777777777 99999999999999988865443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=1.8e-14  Score=126.19  Aligned_cols=184  Identities=14%  Similarity=0.030  Sum_probs=97.6

Q ss_pred             ccccccCCCC------hHHHHhccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhcCCC-----CCc-ccc
Q 041723           22 AMKTLLQSPS------LANLAEKLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYCKEN-----FLP-SLG   85 (228)
Q Consensus        22 l~~l~l~~~~------l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~~~~-----~~p-~~~   85 (228)
                      |++|++.++.      ++.....+++|++|++++|.+++.    ++..+..+++|++|+  +++|.+.     .++ .+.
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~--L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN--FYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE--CTTCCCSSCCHHHHHHHHH
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE--eeccCCCccCHHHHHHHHh
Confidence            5555555553      222334556666666666655433    223344455566666  6666553     122 334


Q ss_pred             CCCCCcEEEeeCCcCCCCCCChhhccccccccc----------cccchhhhcCCCCCEEeccCCcccccCccccccCCCC
Q 041723           86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT----------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL  155 (228)
Q Consensus        86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~----------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  155 (228)
                      .+++|+.|++++|.+. .+|..++.++++..+.          ...+..+..+++|+.++++++... .+|..+..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGC
T ss_pred             hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCC
Confidence            5566666666666555 2444444444433221          112233445556666666654433 455566667777


Q ss_pred             CEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc-cCccccCCCCCccccccc
Q 041723          156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL-AGTTVNTNLPNFTIIGSV  212 (228)
Q Consensus       156 ~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~l~l~  212 (228)
                      ++|++++|.+++. .++..+..+++|++|+++ +.+.+. .+.. ...+++|++|+++
T Consensus       296 ~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~  350 (592)
T 3ogk_B          296 RKLDLLYALLETE-DHCTLIQKCPNLEVLETR-NVIGDRGLEVL-AQYCKQLKRLRIE  350 (592)
T ss_dssp             CEEEETTCCCCHH-HHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-HHHCTTCCEEEEE
T ss_pred             cEEecCCCcCCHH-HHHHHHHhCcCCCEEecc-CccCHHHHHHH-HHhCCCCCEEEee
Confidence            7777777776531 222335667777777777 333322 2222 4567777777777

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=3.7e-13  Score=109.88  Aligned_cols=177  Identities=15%  Similarity=0.160  Sum_probs=127.2

Q ss_pred             ccchhhhcc--------cccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-
Q 041723           10 KIATAAYGT--------ASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK-   77 (228)
Q Consensus        10 ~~~~~~~~~--------l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~-   77 (228)
                      .++..+|.+        +++|+.+.+.+.-  ++ .+|..+++|+.+++.+|.+....+.+|..+.++..+.  ..... 
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~--~~~~~~  160 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP--LGSSDA  160 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC--TTCTHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec--Ccchhh
Confidence            566677777        8888888888732  43 4688888888888888877666666776665555443  22210 


Q ss_pred             ---CCCCc--ccc--------------------------------------------------CCCCCcEEEeeCCcCCC
Q 041723           78 ---ENFLP--SLG--------------------------------------------------NLTKLNDLYLFGNDFSG  102 (228)
Q Consensus        78 ---~~~~p--~~~--------------------------------------------------~l~~L~~L~l~~n~l~~  102 (228)
                         ...+.  .+.                                                  .+++|+.+++.+|.++ 
T Consensus       161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-  239 (329)
T 3sb4_A          161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-  239 (329)
T ss_dssp             HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-
T ss_pred             hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-
Confidence               00110  111                                                  2566777777776665 


Q ss_pred             CCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC-EEEccCCccccCCCcchhhhcCCCC
Q 041723          103 KVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR-ALDLSDNNLSGTGDLNMVLLNLESL  181 (228)
Q Consensus       103 ~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~p~~~~~l~~L  181 (228)
                      .+|+.                .|..+++|+.+++.+| +....+.+|.++.+|+ .+++.+ .++.  .-+..|.++.+|
T Consensus       240 ~I~~~----------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~--I~~~aF~~c~~L  299 (329)
T 3sb4_A          240 TIPDF----------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA--IEFGAFMGCDNL  299 (329)
T ss_dssp             EECTT----------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE--ECTTTTTTCTTE
T ss_pred             eecHh----------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE--EchhhhhCCccC
Confidence            44432                4678899999999998 6645567899999999 999998 6663  345789999999


Q ss_pred             CEEEccCCccccccCccccCCCCCccccc
Q 041723          182 TALVLSSNKLSLLAGTTVNTNLPNFTIIG  210 (228)
Q Consensus       182 ~~L~L~~n~l~~~~~~~~~~~l~~L~~l~  210 (228)
                      +.+++++|.++...... |.++++|+.++
T Consensus       300 ~~l~l~~n~i~~I~~~a-F~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDEL-FGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTT-TCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhh-hcCCcchhhhc
Confidence            99999999999888888 99999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.8e-12  Score=95.93  Aligned_cols=103  Identities=27%  Similarity=0.276  Sum_probs=58.2

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG  119 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~  119 (228)
                      .+++++++|.++. +|..+  .+++++|+  +++|.+..+ | .+..+++|++|++++|+++ .+|..            
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~--L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~------------   72 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG------------   72 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT------------
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEE--cCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChh------------
Confidence            4566676666654 33333  25556666  666666444 3 4566666666666666665 33322            


Q ss_pred             ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723          120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus       120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                          .+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        73 ----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           73 ----VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ----hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence                1345556666666666666433334566666666666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=2.6e-12  Score=105.50  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             cEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccC-CcccccCccccccCCCCCEEEccCCccccC
Q 041723           91 NDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAE-NQLEGSVPSSIFELRNLRALDLSDNNLSGT  168 (228)
Q Consensus        91 ~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  168 (228)
                      ..++.+++ +++ .+|                 . +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+++ 
T Consensus        11 ~~v~~~~~n~l~-~ip-----------------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-   70 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLH-----------------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-   70 (347)
T ss_dssp             SCEECCSSCCCT-TTT-----------------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-
T ss_pred             CEEEcCCCCCCC-ccC-----------------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-
Confidence            34677776 676 455                 3 45678899999996 99996666789999999999999999997 


Q ss_pred             CCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          169 GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       169 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                       ..|..|.++++|+.|+|++|++++.++.. +..++ |+.|++++|     ++.|+|++
T Consensus        71 -~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~-L~~l~l~~N-----~~~c~c~l  121 (347)
T 2ifg_A           71 -VAPDAFHFTPRLSRLNLSFNALESLSWKT-VQGLS-LQELVLSGN-----PLHCSCAL  121 (347)
T ss_dssp             -ECTTGGGSCSCCCEEECCSSCCSCCCSTT-TCSCC-CCEEECCSS-----CCCCCGGG
T ss_pred             -eCHHHhcCCcCCCEEeCCCCccceeCHHH-cccCC-ceEEEeeCC-----CccCCCcc
Confidence             66778899999999999999999877766 66666 999995555     55666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=3.7e-12  Score=94.70  Aligned_cols=103  Identities=25%  Similarity=0.360  Sum_probs=69.8

Q ss_pred             CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccc
Q 041723           43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGE  120 (228)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~  120 (228)
                      +.++++++.+.. +|..+.  ++|++|+  +++|.+..+ | .+..+++|+.|++++|.++ .+|..             
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~-------------   75 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLW--LNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTG-------------   75 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-------------
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEE--eCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChh-------------
Confidence            677888777754 454442  6677777  778877555 3 6777777888888877777 34432             


Q ss_pred             cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723          121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus       121 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                         .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        76 ---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           76 ---VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ---HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence               13566777788888887774333447777778888888777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=8.3e-15  Score=121.81  Aligned_cols=168  Identities=20%  Similarity=0.179  Sum_probs=88.5

Q ss_pred             cCCCCeeecCCccCCCCcchhccCC-----cchHHHHHhhhhcCCCC--Cc-cccCCCCCcEEEeeCCcCCCCCCChhhc
Q 041723           39 LANLKVLHLGQVNTASTVPYASANL-----SSLFSLLSLIAYCKENF--LP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD  110 (228)
Q Consensus        39 l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~~~l~~~~~~~--~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~  110 (228)
                      .+.|++|++++|.++......+...     ++|++|+  +++|.++.  +. ....+++|+.|++++|.+++.....++ 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~-  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVN--LASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR-  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEE--CTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH-
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEE--ecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH-
Confidence            3467777777776654333333222     4666777  77776632  22 223345677777777766521111111 


Q ss_pred             cccccccccccchhh-hcCCCCCEEeccCCccccc----CccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCE
Q 041723          111 LLQLNYLTGEILVEI-RKLTQLHILRLAENQLEGS----VPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTA  183 (228)
Q Consensus       111 l~~~~~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~  183 (228)
                                  ..+ ...++|++|++++|.+++.    ++..+...++|++|++++|.+++.  ..++..+...+.|++
T Consensus       148 ------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~  215 (372)
T 3un9_A          148 ------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE  215 (372)
T ss_dssp             ------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred             ------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence                        112 1345667777777766532    223335566677777777766531  112344455566777


Q ss_pred             EEccCCccccccCcc---ccCCCCCcccccccccccccCcc
Q 041723          184 LVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       184 L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      |+|++|.+++.....   .+...++|++|++++|.+++...
T Consensus       216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence            777777665432221   02345666777777776665443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.29  E-value=3.3e-14  Score=124.51  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             cCCCCCEEeccCCcccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEcc---------CCccccccC
Q 041723          127 KLTQLHILRLAENQLEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS---------SNKLSLLAG  196 (228)
Q Consensus       127 ~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~---------~n~l~~~~~  196 (228)
                      .+++|++|++++|.+.+... ..+..+++|+.|++++| +++ ..++.....+++|++|++.         .+.+++...
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            44556666666555442211 12345556666666655 321 0222223345566666652         233333222


Q ss_pred             ccccCCCCCccccccccccccc
Q 041723          197 TTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       197 ~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      ......+++|+.|.++.|.+++
T Consensus       365 ~~l~~~~~~L~~L~~~~~~l~~  386 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYFCRQMTN  386 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESCCCH
T ss_pred             HHHHHhchhHHHHHHhcCCcCH
Confidence            2212235666666665565554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.26  E-value=1.7e-13  Score=119.90  Aligned_cols=198  Identities=14%  Similarity=0.057  Sum_probs=115.6

Q ss_pred             hcccccccccccCCCCh-----HHHHhccCCCCeeecCCccCCCC-cchhccCCcchHHHHHhhhh---------cCCCC
Q 041723           16 YGTASNAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTAST-VPYASANLSSLFSLLSLIAY---------CKENF   80 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~~l~~---------~~~~~   80 (228)
                      +..+++|++|++++|.+     +..+..+++|++|++++| +... ++.....+++|++|+  +.+         +.++.
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~--L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR--VFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE--EECSCTTCSSCSSCCCH
T ss_pred             HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE--EecCcccccccCCCCCH
Confidence            34567888888888873     334557788888888877 3221 222223466677766  633         22211


Q ss_pred             --Cccc-cCCCCCcEEEeeCCcCCCCCCChhh-cccccccc-------------c-----cccchhhhcCCCCCEEeccC
Q 041723           81 --LPSL-GNLTKLNDLYLFGNDFSGKVPDSLG-DLLQLNYL-------------T-----GEILVEIRKLTQLHILRLAE  138 (228)
Q Consensus        81 --~p~~-~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~~~~l-------------~-----~~~~~~~~~l~~L~~L~ls~  138 (228)
                        +..+ ..+++|+.|.+..+.+++..+..++ .++++..+             +     ..++..+..+++|+.|++++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence              1122 2356677776666666532222222 12221111             1     11122255677888888876


Q ss_pred             CcccccCcccccc-CCCCCEEEccCCccccCCCcchhh-hcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVL-LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       139 n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                       .+++..+..+.. +++|+.|++++|.+++  ..+..+ .++++|++|++++|++++.........+++|++|++++|++
T Consensus       442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSD--LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             -SCCHHHHHHHHHHCTTCCEEEEESCCSSH--HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             -cccHHHHHHHHHhchhccEeeccCCCCcH--HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence             555444444444 7888888888888765  333333 66788888888888886544432245678888888888877


Q ss_pred             ccC
Q 041723          217 ASS  219 (228)
Q Consensus       217 ~~~  219 (228)
                      +..
T Consensus       519 ~~~  521 (594)
T 2p1m_B          519 SFG  521 (594)
T ss_dssp             BHH
T ss_pred             CHH
Confidence            543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=7.9e-13  Score=109.88  Aligned_cols=164  Identities=16%  Similarity=0.086  Sum_probs=118.6

Q ss_pred             ccccccccCCCChHH----HHhc-----cCCCCeeecCCccCCCCcchhc-cCCcchHHHHHhhhhcCCCCCc--cc---
Q 041723           20 SNAMKTLLQSPSLAN----LAEK-----LANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLP--SL---   84 (228)
Q Consensus        20 ~~l~~l~l~~~~l~~----~~~~-----l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~~~l~~~~~~~~p--~~---   84 (228)
                      ++++++++++|.+.+    .+..     ..+|++|++++|.+.......+ ..+++|++|+  +++|.++...  .+   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~--Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG--LQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEE--CCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhh--cCCCCCCHHHHHHHHHH
Confidence            578899999998532    2222     2699999999999875433333 3467889999  9999994333  32   


Q ss_pred             --cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCCCCEE
Q 041723           85 --GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRNLRAL  158 (228)
Q Consensus        85 --~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L  158 (228)
                        ...++|++|++++|.++..   +.          ..++..+..+++|++|++++|.+.+..    +..+...++|+.|
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~---~~----------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L  216 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAA---GV----------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL  216 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHH---HH----------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred             HHhcCCccceeeCCCCCCChH---HH----------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence              3468899999999988621   11          123344567889999999999987532    4556778899999


Q ss_pred             EccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          159 DLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       159 ~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                      ++++|.+++.  ..+...+...+.|++|+|++|.+++.....
T Consensus       217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            9999999851  123445667789999999999998654443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.09  E-value=2.1e-10  Score=96.22  Aligned_cols=198  Identities=12%  Similarity=0.080  Sum_probs=132.9

Q ss_pred             cccccchhhhcccccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-
Q 041723            7 RKKKIATAAYGTASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-   82 (228)
Q Consensus         7 ~~~~~~~~~~~~l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-   82 (228)
                      .++.+...+|.+. +|+.+.+...-  ++ .+|..+.+|+.+++.+|.++.....+|. ..+|+.+.  +..+ +..++ 
T Consensus       145 ~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~--lp~~-l~~I~~  219 (401)
T 4fdw_A          145 GLKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL--LPVT-LKEIGS  219 (401)
T ss_dssp             TCCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE--CCTT-CCEECT
T ss_pred             CccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE--eCCc-hheehh
Confidence            3667777778774 68888887643  33 5788889999999988887765556665 57788777  7633 65665 


Q ss_pred             -cccCCCCCcEEEeeCCcCCCCCC-Chhhccccc------cccccccchhhhcCCCCCEEeccCCccc-----ccCcccc
Q 041723           83 -SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQL------NYLTGEILVEIRKLTQLHILRLAENQLE-----GSVPSSI  149 (228)
Q Consensus        83 -~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~------~~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~~~~~  149 (228)
                       .|.++++|+.+++..+ ++ .++ ..|.. ..+      +.+...-...|..+++|+.+.+.++.+.     ...+..|
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             hHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence             7788888888888764 33 222 22222 221      1222223445677888888888877654     2334667


Q ss_pred             ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                      ..+++|+.+.+.+ .++.  .-...|.++.+|+.+.+..+ ++...... |.++ +|+.+.++.|.+..
T Consensus       297 ~~c~~L~~l~l~~-~i~~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~a-F~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          297 EGCPKLARFEIPE-SIRI--LGQGLLGGNRKVTQLTIPAN-VTQINFSA-FNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTCTTCCEECCCT-TCCE--ECTTTTTTCCSCCEEEECTT-CCEECTTS-SSSS-CCCEEEECCSSCCB
T ss_pred             hCCccCCeEEeCC-ceEE--EhhhhhcCCCCccEEEECcc-ccEEcHHh-CCCC-CCCEEEEcCCCCcc
Confidence            8888888888884 3553  33456778888888888555 65555666 7788 88888888777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=3.9e-10  Score=92.41  Aligned_cols=103  Identities=24%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             CeeecCCc-cCCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723           43 KVLHLGQV-NTASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT  118 (228)
Q Consensus        43 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~  118 (228)
                      ..++.+++ .++. +|. +..+++|+.|+  +++ |.+..+|  .|.++++|+.|++++|.+++..|.            
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~--l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------   74 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELY--IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------   74 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEE--CCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEE--ccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------
Confidence            35688777 7765 666 88888899988  985 8887666  688899999999999988843333            


Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                           .|..+++|+.|++++|.+++..+..+..+. |+.|++.+|.+.-
T Consensus        75 -----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           75 -----AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             -----GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             -----HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                 356778899999999998854334444444 8999999988874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.92  E-value=2.2e-09  Score=89.94  Aligned_cols=198  Identities=11%  Similarity=0.070  Sum_probs=137.6

Q ss_pred             CcccccchhhhcccccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc
Q 041723            6 TRKKKIATAAYGTASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP   82 (228)
Q Consensus         6 ~~~~~~~~~~~~~l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p   82 (228)
                      +.++.+...+|.+. +|+.+.+..+-  ++ .+|..+ .|+.+++.+ .+......+|.++.+|+.++  +..|.+..++
T Consensus       122 ~~i~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~--l~~n~l~~I~  196 (401)
T 4fdw_A          122 NSVKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD--LSKTKITKLP  196 (401)
T ss_dssp             TTCCEECTTTTTTC-CCSEEECCTTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE--CTTSCCSEEC
T ss_pred             CccCEehHhhcccC-CccEEEeCCCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee--cCCCcceEec
Confidence            45677778888875 78888887764  43 356664 699999986 56666678899999999999  9999998887


Q ss_pred             --cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc-----cccc-hhhhcCCCCCEEeccCCcccccCccccccCCC
Q 041723           83 --SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-----GEIL-VEIRKLTQLHILRLAENQLEGSVPSSIFELRN  154 (228)
Q Consensus        83 --~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~-----~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  154 (228)
                        .|. ..+|+.+.+..+ ++..-...|..++.+..+.     ..++ ..|.. .+|+.+.+. +.+.......|..+.+
T Consensus       197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~  272 (401)
T 4fdw_A          197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE  272 (401)
T ss_dssp             TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred             hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence              554 688999998754 5422334454444433331     1122 23333 678888884 4455344677889999


Q ss_pred             CCEEEccCCccccC--C-CcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723          155 LRALDLSDNNLSGT--G-DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE  214 (228)
Q Consensus       155 L~~L~l~~n~~~~~--~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n  214 (228)
                      |+.+.+.++.+...  . .-+..|.++.+|+.+.+.. .++...... |.+|.+|+.+.+..+
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a-F~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL-LGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT-TTTCCSCCEEEECTT
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh-hcCCCCccEEEECcc
Confidence            99999988776410  0 2345788899999999984 477666667 889999999988544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=8.3e-10  Score=91.22  Aligned_cols=164  Identities=16%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             HhccCCCCeeecCCccCC---------CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCC
Q 041723           36 AEKLANLKVLHLGQVNTA---------STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPD  106 (228)
Q Consensus        36 ~~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~  106 (228)
                      ...+++|+.|.+.+....         +.+...+..+|+|+.|.  +++|.-..++.+ .+++|+.|++..+.+..   .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~--L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~---~  208 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLK--IKGTNNLSIGKK-PRPNLKSLEIISGGLPD---S  208 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEE--EECCBTCBCCSC-BCTTCSEEEEECSBCCH---H
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEE--EeCCCCceeccc-cCCCCcEEEEecCCCCh---H
Confidence            445667777776544221         12334445566677766  666532223333 25667777776665541   1


Q ss_pred             hhhccccccccccccchhhhcCCCCCEEeccC--Cccccc-----Ccccc--ccCCCCCEEEccCCccccCCCcchhhh-
Q 041723          107 SLGDLLQLNYLTGEILVEIRKLTQLHILRLAE--NQLEGS-----VPSSI--FELRNLRALDLSDNNLSGTGDLNMVLL-  176 (228)
Q Consensus       107 ~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~~~~~~~~p~~~~-  176 (228)
                      .+..+            ....+++|++|+++.  +...+.     +...+  ..+++|+.|++.+|.+++  ..+..+. 
T Consensus       209 ~l~~l------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~--~~~~~la~  274 (362)
T 2ra8_A          209 VVEDI------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN--VVVEMFLE  274 (362)
T ss_dssp             HHHHH------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH--HHHHHHHH
T ss_pred             HHHHH------------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch--HHHHHHHh
Confidence            11000            011455666666542  111100     00111  235666666666666553  2222221 


Q ss_pred             --cCCCCCEEEccCCccccccCccc---cCCCCCcccccccccccccC
Q 041723          177 --NLESLTALVLSSNKLSLLAGTTV---NTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       177 --~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~l~l~~n~~~~~  219 (228)
                        .++.|++|+|+.|.+.+..+..+   +.++++|+.|++++|.+++.
T Consensus       275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence              34566666666666654322110   23456666666666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=5.4e-09  Score=86.32  Aligned_cols=181  Identities=16%  Similarity=0.123  Sum_probs=116.8

Q ss_pred             hcccccccccccCCC-------------ChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC--C
Q 041723           16 YGTASNAMKTLLQSP-------------SLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN--F   80 (228)
Q Consensus        16 ~~~l~~l~~l~l~~~-------------~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~--~   80 (228)
                      ...+++|+.|.+.+.             .++..+..+++|+.|++++|.-. .++. + .+++|++|.  +..|.+.  .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~--L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLE--IISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEE--EECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEE--EecCCCChHH
Confidence            445667877777543             25567788999999999887321 2233 3 378999999  9888873  2


Q ss_pred             Cccc--cCCCCCcEEEeeCC--cCCCCC-CChhhccccccccccccchhhhcCCCCCEEeccCCcccccCcccc---ccC
Q 041723           81 LPSL--GNLTKLNDLYLFGN--DFSGKV-PDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI---FEL  152 (228)
Q Consensus        81 ~p~~--~~l~~L~~L~l~~n--~l~~~~-p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~---~~l  152 (228)
                      +..+  ..+++|+.|+++.+  ...+.. ...+..+         +  ....+++|+.|++.+|.+.+..+..+   ..+
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---------l--~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~  278 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---------F--SKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL  278 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---------S--CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---------H--hcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence            2233  37899999998642  221111 1111110         0  01357899999999999875443333   357


Q ss_pred             CCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCccccCC-CCCcccccccccc
Q 041723          153 RNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN-LPNFTIIGSVHET  215 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~l~l~~n~  215 (228)
                      ++|+.|+++.|.+++.  ..++..+..+++|+.|++++|.++...... +.. +  -..++++++.
T Consensus       279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~-l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE-LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH-HHHHC--CSEEECCSBC
T ss_pred             CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH-HHHHc--CCEEEecCCc
Confidence            8999999999998851  013334456789999999999987654443 322 2  3457777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=5.2e-09  Score=78.32  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             ccCCCCCcEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCCCCEE
Q 041723           84 LGNLTKLNDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRNLRAL  158 (228)
Q Consensus        84 ~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L  158 (228)
                      +...+.|++|++++| .+..   .++.          .+...+...++|++|++++|.+....    ...+...++|++|
T Consensus        32 l~~~~~L~~L~L~~n~~i~~---~g~~----------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPV---PTLK----------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCH---HHHH----------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HhcCCCCCEEEecCCCCCCH---HHHH----------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence            445677888888877 6651   1111          12233455677888888888876432    2334556778888


Q ss_pred             EccCCccccC--CCcchhhhcCCCCCEEEc--cCCccccccCcc---ccCCCCCcccccccccccccCc
Q 041723          159 DLSDNNLSGT--GDLNMVLLNLESLTALVL--SSNKLSLLAGTT---VNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       159 ~l~~n~~~~~--~~~p~~~~~l~~L~~L~L--~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      ++++|.+++.  ..+...+.....|++|+|  ++|.+.......   .+...+.|++|++++|.+++..
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            8888887741  123445566677888888  778886543221   1445577888888888876543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=9.6e-08  Score=71.35  Aligned_cols=129  Identities=13%  Similarity=0.140  Sum_probs=80.1

Q ss_pred             hHHHHhccCCCCeeecCCc-cCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhc
Q 041723           32 LANLAEKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGD  110 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~  110 (228)
                      +...+...+.|++|++++| .+.....         +.+.           ..+...++|++|++++|.+..   .+.. 
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~---------~~l~-----------~~L~~~~~L~~L~Ls~n~i~~---~g~~-   83 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTL---------KACA-----------EALKTNTYVKKFSIVGTRSND---PVAF-   83 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHH---------HHHH-----------HHHTTCCSCCEEECTTSCCCH---HHHH-
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHH---------HHHH-----------HHHHhCCCcCEEECcCCCCCh---HHHH-
Confidence            3445667788888888887 6653211         1111           123345678888888887752   1111 


Q ss_pred             cccccccccccchhhhcCCCCCEEeccCCccccc----CccccccCCCCCEEEc--cCCccccC--CCcchhhhcCCCCC
Q 041723          111 LLQLNYLTGEILVEIRKLTQLHILRLAENQLEGS----VPSSIFELRNLRALDL--SDNNLSGT--GDLNMVLLNLESLT  182 (228)
Q Consensus       111 l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~~~~~--~~~p~~~~~l~~L~  182 (228)
                               .+...+...++|++|++++|.+.+.    +...+...++|+.|++  ++|.+++.  ..+...+...+.|+
T Consensus        84 ---------~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~  154 (185)
T 1io0_A           84 ---------ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL  154 (185)
T ss_dssp             ---------HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             ---------HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence                     1223445667788888888887643    2345566778888888  77887741  11334555667888


Q ss_pred             EEEccCCcccc
Q 041723          183 ALVLSSNKLSL  193 (228)
Q Consensus       183 ~L~L~~n~l~~  193 (228)
                      +|++++|.+..
T Consensus       155 ~L~L~~n~i~~  165 (185)
T 1io0_A          155 KFGYHFTQQGP  165 (185)
T ss_dssp             EEECCCSSHHH
T ss_pred             EEeccCCCCCh
Confidence            88888887753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=2.3e-07  Score=73.19  Aligned_cols=83  Identities=25%  Similarity=0.352  Sum_probs=63.9

Q ss_pred             hcCCCCCEEeccCCcccc--cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc------
Q 041723          126 RKLTQLHILRLAENQLEG--SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT------  197 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~------  197 (228)
                      ..+++|+.|++++|.+++  .+|..+..+++|+.|++++|.++++..+ ..+..+ +|++|+|++|++.+..+.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            467899999999999986  3446677999999999999999863222 223344 899999999999875542      


Q ss_pred             cccCCCCCccccc
Q 041723          198 TVNTNLPNFTIIG  210 (228)
Q Consensus       198 ~~~~~l~~L~~l~  210 (228)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1256789999887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.30  E-value=2.2e-06  Score=71.39  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=62.0

Q ss_pred             hhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723          124 EIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL  203 (228)
Q Consensus       124 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  203 (228)
                      .+..+.+|+.+.+..+ +......+|..+.+|+.+++..+ ++.  .-...|.++.+|+.+.+..+ ++...... |.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C  365 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE--IGKRSFRGCTSLSNINFPLS-LRKIGANA-FQGC  365 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCEECCCTT-CCEECTTT-BTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE--EhHHhccCCCCCCEEEECcc-ccEehHHH-hhCC
Confidence            3556778888887654 44234567888999999998754 442  23457888999999999776 66666667 8899


Q ss_pred             CCccccccccc
Q 041723          204 PNFTIIGSVHE  214 (228)
Q Consensus       204 ~~L~~l~l~~n  214 (228)
                      ++|+.+.+..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            99999987654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.6e-07  Score=72.91  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             hcccccccc--cccCCCC---hHH----HHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCccc
Q 041723           16 YGTASNAMK--TLLQSPS---LAN----LAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLPSL   84 (228)
Q Consensus        16 ~~~l~~l~~--l~l~~~~---l~~----~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p~~   84 (228)
                      +...+.|..  +++..|.   ++.    ...++++|+.|++++|.+.+.  ++..+..+++|+.|+  +++|.+..+..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~--Ls~N~i~~~~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN--LSGNELKSEREL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE--CTTSCCCSGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE--CCCCccCCchhh
Confidence            444555655  6667774   333    235689999999999999883  457778999999999  999999766544


Q ss_pred             cCCC--CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEe
Q 041723           85 GNLT--KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR  135 (228)
Q Consensus        85 ~~l~--~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~  135 (228)
                      ..+.  +|++|++.+|.+++.+|..-.          -....+..+++|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~----------y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQST----------YISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHH----------HHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchh----------HHHHHHHHCcccCeEC
Confidence            4444  899999999999866653210          0012345677787765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=4.9e-07  Score=66.70  Aligned_cols=87  Identities=8%  Similarity=0.030  Sum_probs=67.1

Q ss_pred             CCCCEEeccCCcccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcC----CCCCEEEccCCc-cccccCccccCC
Q 041723          129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNL----ESLTALVLSSNK-LSLLAGTTVNTN  202 (228)
Q Consensus       129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~  202 (228)
                      ..|++|+++++.++...-..+..+++|+.|++++|. +++  .--..+..+    ++|++|++++|. +++..... +.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence            368999999999887666678899999999999995 765  333445443    479999999985 87766666 778


Q ss_pred             CCCcccccccccc-ccc
Q 041723          203 LPNFTIIGSVHET-LAS  218 (228)
Q Consensus       203 l~~L~~l~l~~n~-~~~  218 (228)
                      +++|+.|++++.. +++
T Consensus       138 ~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEECCCCCCCCc
Confidence            9999999988764 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=7.7e-06  Score=60.25  Aligned_cols=84  Identities=13%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             CCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCc-ccccCccccccC----CCCCEEEccC
Q 041723           88 TKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ-LEGSVPSSIFEL----RNLRALDLSD  162 (228)
Q Consensus        88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l----~~L~~L~l~~  162 (228)
                      ..|+.||+++|.++.   .++.              .+..+++|++|++++|. +++..-..+..+    ++|++|++++
T Consensus        61 ~~L~~LDLs~~~Itd---~GL~--------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~  123 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS---IGFD--------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS  123 (176)
T ss_dssp             CCEEEEEEESCCCCG---GGGG--------------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred             ceEeEEeCcCCCccH---HHHH--------------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence            458888888887652   2221              24577888999998885 664444445553    4788999988


Q ss_pred             Cc-cccCCCcchhhhcCCCCCEEEccCCc
Q 041723          163 NN-LSGTGDLNMVLLNLESLTALVLSSNK  190 (228)
Q Consensus       163 n~-~~~~~~~p~~~~~l~~L~~L~L~~n~  190 (228)
                      |. +|+  .--..+.++++|++|++++++
T Consensus       124 C~~ITD--~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          124 CGNVTD--KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCH--HHHHHGGGCTTCCEEEEESCT
T ss_pred             CCcCCH--HHHHHHhcCCCCCEEECCCCC
Confidence            85 775  444556778889999998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=3.5e-05  Score=64.02  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723          147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA  217 (228)
Q Consensus       147 ~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (228)
                      ..|..+.+|+.+.+..+ ++.  .-...|.++.+|+.+.+..+ ++...... |.+|.+|+.+.+..+...
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~C~~L~~i~ip~s-v~~I~~~a-F~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQ--ILDDAFAGCEQLERIAIPSS-VTKIPESA-FSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEECTT-CCBCCGGG-GTTCTTCCEEEESSCHHH
T ss_pred             eeecCCCCcCEEEeCCc-ccE--ehHhHhhCCCCCCEEEECcc-cCEEhHhH-hhCCCCCCEEEECCceee
Confidence            45666777777777654 332  22346777888888888554 55555566 888888888887776544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.87  E-value=3.6e-05  Score=63.94  Aligned_cols=191  Identities=10%  Similarity=-0.049  Sum_probs=106.4

Q ss_pred             cccccchhhhcccccccccccCCCC--h-HHHHhccCCCCeeecCCccCC-C--------------------CcchhccC
Q 041723            7 RKKKIATAAYGTASNAMKTLLQSPS--L-ANLAEKLANLKVLHLGQVNTA-S--------------------TVPYASAN   62 (228)
Q Consensus         7 ~~~~~~~~~~~~l~~l~~l~l~~~~--l-~~~~~~l~~L~~L~l~~n~~~-~--------------------~~~~~~~~   62 (228)
                      ....+...+|.++.+|+.+.+..+-  + ..++..+..|+.+++..+... +                    ....++..
T Consensus       172 ~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~  251 (394)
T 4fs7_A          172 SMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYG  251 (394)
T ss_dssp             TCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTT
T ss_pred             ccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccc
Confidence            3455677788888888888887663  3 346667777777766543211 0                    11122223


Q ss_pred             CcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccccc------ccccccchhhhcCCCCCEEe
Q 041723           63 LSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN------YLTGEILVEIRKLTQLHILR  135 (228)
Q Consensus        63 l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~------~l~~~~~~~~~~l~~L~~L~  135 (228)
                      +..++.+.  +..+...--. .+..+..++.+......+..   ..+.....+.      .+...-...+..+.+|+.++
T Consensus       252 ~~~l~~~~--~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          252 CTDLESIS--IQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             CSSCCEEE--ECCTTCEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEEC
T ss_pred             cccceeEE--cCCCcceeeccccccccccceeccCceeecc---ccccccccccccccccccceechhhhcCCCCCCEEE
Confidence            33333333  3222211111 33344444444443322210   1111111111      11222234567889999999


Q ss_pred             ccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccc
Q 041723          136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII  209 (228)
Q Consensus       136 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l  209 (228)
                      +..+ +......+|.++.+|+.+++..+ ++.  .-...|.++.+|+.+++..+- +.. ... +.++++|+.+
T Consensus       327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~~-~~~-~~~-F~~c~~L~~I  393 (394)
T 4fs7_A          327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKRL-EQY-RYD-FEDTTKFKWI  393 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGGG-GGG-GGG-BCTTCEEEEE
T ss_pred             eCCc-ccEEhHHhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCCC-EEh-hhe-ecCCCCCcEE
Confidence            9754 55344578899999999999876 553  335678999999999997653 222 345 7788887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.78  E-value=2.5e-05  Score=54.66  Aligned_cols=57  Identities=23%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             CEEeccCCccc-ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723          132 HILRLAENQLE-GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS  192 (228)
Q Consensus       132 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~  192 (228)
                      ..++.+++.++ ..+|..  -..+|+.|+|++|.++.  .-+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence            35666666664 234533  23357777777777763  22344566667777777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.50  E-value=0.00021  Score=59.31  Aligned_cols=125  Identities=8%  Similarity=0.055  Sum_probs=74.5

Q ss_pred             cccCCCCCcEEEeeCCcCCCCCCChhhccccccc------cccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723           83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY------LTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR  156 (228)
Q Consensus        83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  156 (228)
                      .|.++..|+.+.+..+... .-...+.....+..      +...-...|..+.+|+.+.+..+ ++.....+|.++.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            4566778888887654322 22223333332222      22222345677899999999764 4434456799999999


Q ss_pred             EEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                      .+.+..+ ++.  .-...|.++.+|+.+++.++....   .. +..+..|+.+.+..+.+
T Consensus       338 ~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~~~~~---~~-~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VTK--IPESAFSNCTALNNIEYSGSRSQW---NA-ISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CCB--CCGGGGTTCTTCCEEEESSCHHHH---HT-CBCCCCC----------
T ss_pred             EEEECcc-cCE--EhHhHhhCCCCCCEEEECCceeeh---hh-hhccCCCCEEEeCCCCE
Confidence            9999765 442  335679999999999999886542   23 55677888887665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.39  E-value=0.00033  Score=57.66  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             hhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723          125 IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL  203 (228)
Q Consensus       125 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  203 (228)
                      +..+++|+.+.+.++.+.......|..+.+|+.+.+..+ ++.  .-..+|.++.+|+.+.+..+ ++...... |.++
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~ip~~-v~~I~~~a-F~~c  355 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT--IQVYAFKNCKALSTISYPKS-ITLIESGA-FEGS  355 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEECTTT-TTTS
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE--EHHHHhhCCCCCCEEEECCc-cCEEchhH-hhCC
Confidence            344555666655555554223345555566666665443 221  11234555555665555433 33333333 4444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.34  E-value=0.00054  Score=56.34  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             hhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723          124 EIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL  203 (228)
Q Consensus       124 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  203 (228)
                      .+..+.+|+.+.+..+ +.......|..+.+|+.+.+.++.++.  .-...|.++.+|+.+.+..+ ++...... |.+|
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C  332 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQVYA-FKNC  332 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTC
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEHHHH-hhCC
Confidence            4566778888888654 432334678899999999999888774  33567889999999999755 66565667 8999


Q ss_pred             CCccccccccc
Q 041723          204 PNFTIIGSVHE  214 (228)
Q Consensus       204 ~~L~~l~l~~n  214 (228)
                      .+|+.+.+..+
T Consensus       333 ~~L~~i~ip~~  343 (379)
T 4h09_A          333 KALSTISYPKS  343 (379)
T ss_dssp             TTCCCCCCCTT
T ss_pred             CCCCEEEECCc
Confidence            99999988543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.47  E-value=0.00058  Score=51.13  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             HHhccCCCCeeecCCc-cCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723           35 LAEKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ  113 (228)
Q Consensus        35 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  113 (228)
                      .+.+-+.|++|+++++ .+....         .+.+.           ..+..-..|+.|++++|.+.+..-.       
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~g---------a~~la-----------~aL~~N~~L~~L~L~~n~igd~ga~-------   88 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKER---------IRSLI-----------EAACNSKHIEKFSLANTAISDSEAR-------   88 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHH---------HHHHH-----------HHHTTCSCCCEEECTTSCCBHHHHT-------
T ss_pred             HHhcCCCccEEECCCCCCCCHHH---------HHHHH-----------HHHhhCCCcCEEEccCCCCChHHHH-------
Confidence            3445567888888875 554211         11111           0222334566777777766521111       


Q ss_pred             ccccccccchhhhcCCCCCEEeccCCcccccCc----cccccCCCCCEEEccCCcc---ccC--CCcchhhhcCCCCCEE
Q 041723          114 LNYLTGEILVEIRKLTQLHILRLAENQLEGSVP----SSIFELRNLRALDLSDNNL---SGT--GDLNMVLLNLESLTAL  184 (228)
Q Consensus       114 ~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~~---~~~--~~~p~~~~~l~~L~~L  184 (228)
                            .+...+...+.|++|++++|.|.+...    ..+..-..|+.|+++++..   .+.  ..+-..+..-+.|+.+
T Consensus        89 ------alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L  162 (197)
T 1pgv_A           89 ------GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV  162 (197)
T ss_dssp             ------THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             ------HHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence                  122234455667777777777654322    2334455677777765422   210  0233345555677777


Q ss_pred             EccCCcc
Q 041723          185 VLSSNKL  191 (228)
Q Consensus       185 ~L~~n~l  191 (228)
                      +++.|.+
T Consensus       163 ~l~~~~~  169 (197)
T 1pgv_A          163 GISFASM  169 (197)
T ss_dssp             ECCCCCH
T ss_pred             eccCCCc
Confidence            7766654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.45  E-value=0.0082  Score=41.66  Aligned_cols=38  Identities=26%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             CCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723          129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus       129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      +++++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36889999999998544556788889999999998875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.22  E-value=0.0033  Score=46.99  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             hcCCCCCEEeccCC-ccccc----CccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723          126 RKLTQLHILRLAEN-QLEGS----VPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       126 ~~l~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                      ..-+.|++|+++++ .+...    +...+..-..|+.|++++|.+.+.  ..+-..+..-..|++|+|++|.+.......
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455666666654 44321    122334455666666666666531  233334444556666666666665432211


Q ss_pred             ---ccCCCCCccccccccc
Q 041723          199 ---VNTNLPNFTIIGSVHE  214 (228)
Q Consensus       199 ---~~~~l~~L~~l~l~~n  214 (228)
                         -+..-..|++|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence               0233344666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
           L  N++ G++P  + +L+ L +L++S NNL G         NL+       ++NK 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 111 LLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165
            L+ N + G +   + +L  LH L ++ N L G +P     L+       ++N  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 82  PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL 117
             L  L  L+ L +  N+  G++P   G+L + +  
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 15/156 (9%)

Query: 38  KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSL-IAYCKENFLPSLGNLTKLNDLYLF 96
            L NL  L L     ++  P     LS L  L  L +   + + +  L  LT L +L L 
Sbjct: 239 SLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 97  GNDFSGKVPDSLGDLLQLNYLTG---EILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153
            N      P S    L    L       +  +  LT+L  L  A N++     SS+  L 
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSN 189
           N+  L    N +S    L     NL  +T L L+  
Sbjct: 352 NINWLSAGHNQISDLTPLA----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 13/155 (8%)

Query: 41  NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDF 100
           NL  L L             A+L++L  L   +A  + + L  L  LTKL +L L  N  
Sbjct: 220 NLDELSLNGNQL--KDIGTLASLTNLTDLD--LANNQISNLAPLSGLTKLTELKLGANQI 275

Query: 101 SGKVPD---SLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA 157
           S   P    +    L+LN    E +  I  L  L  L L  N +    P  +  L  L+ 
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 333

Query: 158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           L  ++N +S    L     NL ++  L    N++S
Sbjct: 334 LFFANNKVSDVSSLA----NLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 73  IAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLH 132
           +   +   + +L +LT L DL L  N  S   P S    L    L    +  I  L  L 
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 285

Query: 133 ILRLAENQL-EGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191
            L   E    +    S I  L+NL  L L  NN+S    ++    +L  L  L  ++NK+
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS----SLTKLQRLFFANNKV 341

Query: 192 SLLAGTTVNTNL 203
           S ++     TN+
Sbjct: 342 SDVSSLANLTNI 353

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 131 LHILRLAENQLEGSVPSSIFE-LRNLRALDLSDNNLSGTG--DLNMVLLNLESLTALVLS 187
           +  L +   +L  +  + +   L+  + + L D  L+     D++  L    +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 188 SNKLS 192
           SN+L 
Sbjct: 64  SNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 112 LQLNYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSSIFE----LRNLRALDLSDNNLS 166
           +Q   L+     E+   L Q  ++RL +  L  +    I         L  L+L  N L 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 167 GTGD---LNMVLLNLESLTALVLSSN 189
             G    L  +      +  L L + 
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 20/116 (17%)

Query: 76  CKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR 135
            +E         + L  L+L   D S     SL   L                  L  L 
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-------------ANHSLRELD 403

Query: 136 LAENQLEGSVPSSIFE-----LRNLRALDLSDNNLSGTGD--LNMVLLNLESLTAL 184
           L+ N L  +    + E        L  L L D   S   +  L  +  +  SL  +
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 129 TQLHILRLAENQLEG----SVPSSIFELRNLRALDLSDNNLSGTGD---LNMVLLNLESL 181
           + L +L LA+  +      S+ +++    +LR LDLS+N L   G    +  V      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 182 TALVLSSNKLSLLAG---TTVNTNLPNFTII 209
             LVL     S         +  + P+  +I
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           ++++LD+    LS       +L  L+    + L    L+
Sbjct: 3   DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLT 40

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
             LN  + EI         L  L ++ N+L   +P+       L  L  S N+L+   +L
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPEL 322

Query: 172 NMVLLNLESLTALVLSSNKLS 192
                  ++L  L +  N L 
Sbjct: 323 ------PQNLKQLHVEYNPLR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 128 LTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS 187
             +L  L  + N L   VP      +NL+ L +  N L    D+       ES+  L ++
Sbjct: 303 PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREFPDI------PESVEDLRMN 352

Query: 188 S 188
           S
Sbjct: 353 S 353

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 45  LHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKV 104
           L    + ++     A   +  L      IA      +P  G    L +L+L GN  +   
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLS--YIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVD 187

Query: 105 PDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA 157
             SL  L  L  L       +      +     L  L L  N+L   VP  + + + ++ 
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 246

Query: 158 LDLSDNNLS----GTGDLNMVLLNLESLTALVLSSNKLSLL 194
           + L +NN+S                 S + + L SN +   
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 18/56 (32%), Positives = 24/56 (42%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167
           LQ N +T     + + L  LH L L  N++    P +   L  L  L LS N L  
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT--GEILVEIRKLTQLHI--LRLAE 138
              NL  L+ L L  N  S   P +   L++L  L      L E+ +     +  LR+ E
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 139 NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           N++     S    L  +  ++L  N L  +G  N     ++ L+ + ++   ++ +
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 81  LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-----TGEILVEIRKLTQLHILR 135
           L  L  L  +  L L  N      P +L  L  L  L       E +  +  L +L  L 
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 136 LAENQLEG-SVPSSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALV 185
           L  N+L+  +    +     L  L+L  N+L     +   +   L S+++++
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 115 NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
           N LT      +  L  L  L L EN L  ++P   F    L    L  N      ++
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL 181
           + E+ K+     +   +  L  ++P  +   ++   L LS+N L         L+    L
Sbjct: 3   ICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTF--SLATLMPYTRL 57

Query: 182 TALVLSSNKLSLLAGTTVNTNLPNF 206
           T L L   +L+ L        L   
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTL 82

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG--DLNMVLLNLESLTALVLSS 188
           L +  +     + SV + + E  +++ + LS N +       L+  + + + L     S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 189 NKLSLL 194
                +
Sbjct: 69  IFTGRV 74

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 94  YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE-- 151
            L     S +   ++ D                +   L  LRL  N++E     ++    
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKL-----------ENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 152 ---LRNLRALDLSDNNLSGTGDLNMVLLNLESL 181
              + +L  L+L+ N  S   D+   +  + S 
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 9e-04
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 83  SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL------NYLTGEILVEIRKLTQLHILRL 136
               L +L  L L+ N  S  +P S   L  L      +               L    L
Sbjct: 97  MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156

Query: 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD 170
                    PS    +R+++  DL  +    + +
Sbjct: 157 NGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE 187

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171
           L    L  ++   +     +   R   + ++  +    F    ++ +DLS++ +  +  L
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST-L 63

Query: 172 NMVLLNLESLTALVLSSNKLS 192
           + +L     L  L L   +LS
Sbjct: 64  HGILSQCSKLQNLSLEGLRLS 84

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194
           +L    +E +  +        R LDL    +     +  +   L+   A+  S N++  L
Sbjct: 2   KLTAELIEQA--AQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKL 56

Query: 195 AGTTVNTNLPNFTIIGSVHETLASSHIFCTT 225
            G  +   L    +  +    +         
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 87

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 128 LTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS 187
             +     L +  +  +V  +  EL ++  +  +++++     +      L ++T L L+
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFLN 76

Query: 188 SNKLS 192
            NKL+
Sbjct: 77  GNKLT 81

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 10/161 (6%)

Query: 39  LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98
           L  L  LHL +       P     L++L  L       +     +  +L  L  L+L GN
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 99  DFSGKVPDSLGDL-------LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151
             S     +   L       L  N +        R L +L  L L  N L      ++  
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192
           LR L+ L L+DN          +   L+       SS+++ 
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFR---GSSSEVP 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.71

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.8e-26  Score=184.73  Aligned_cols=210  Identities=25%  Similarity=0.311  Sum_probs=167.2

Q ss_pred             CcCCccccc--chhhhcccccccccccCC-CC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh
Q 041723            3 HHGTRKKKI--ATAAYGTASNAMKTLLQS-PS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY   75 (228)
Q Consensus         3 ~~~~~~~~~--~~~~~~~l~~l~~l~l~~-~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~   75 (228)
                      ++++.+...  .+..++.+++|++|++++ |.    +|+.++++++|++|++++|++.+..+..+..+.+|+.++  +++
T Consensus        57 L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~--l~~  134 (313)
T d1ogqa_          57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD--FSY  134 (313)
T ss_dssp             EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE--CCS
T ss_pred             CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc--ccc
Confidence            344544442  357888888999998876 43    788888899999999998888887788888888888888  888


Q ss_pred             cCC-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc--------cc-----------------------ccccccc
Q 041723           76 CKE-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ--------LN-----------------------YLTGEIL  122 (228)
Q Consensus        76 ~~~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~--------~~-----------------------~l~~~~~  122 (228)
                      |.+ ..+| .+..++.++++++++|.+.+.+|+.++.+..        .+                       ...+..|
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             ccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            887 6777 8888899999999999888788877766544        11                       1224556


Q ss_pred             hhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723          123 VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN  202 (228)
Q Consensus       123 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  202 (228)
                      ..++.+++++.++++++.+.+.+ ..++.+++|+.|++++|.+++  .+|.++.++++|++|+|++|+++|.+|.  +++
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g--~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~  289 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGN  289 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCC--STT
T ss_pred             ccccccccccccccccccccccc-cccccccccccccCccCeecc--cCChHHhCCCCCCEEECcCCcccccCCC--ccc
Confidence            66677788999999999988654 468888999999999999998  8999999999999999999999988774  678


Q ss_pred             CCCcccccccccc-cccC
Q 041723          203 LPNFTIIGSVHET-LASS  219 (228)
Q Consensus       203 l~~L~~l~l~~n~-~~~~  219 (228)
                      +.+|+.+++++|+ +.+.
T Consensus       290 L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGSCGGGTCSSSEEEST
T ss_pred             CCCCCHHHhCCCccccCC
Confidence            8999999998886 4544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=167.98  Aligned_cols=177  Identities=23%  Similarity=0.222  Sum_probs=124.3

Q ss_pred             cccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEe
Q 041723           21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYL   95 (228)
Q Consensus        21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l   95 (228)
                      ++++|++++|.   +| ++|..+++|++|++++|.++. ++ .++.+++|++|+  +++|++...+ .+.++++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~--Ls~N~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD--LSHNQLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE--CCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc--cccccccccccccccccccccccc
Confidence            55566666665   22 345556666666666665543 22 234556666666  6666664444 5555666666666


Q ss_pred             eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723           96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL  175 (228)
Q Consensus        96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~  175 (228)
                      ++|.+. .++                +..+..+.+++.+++++|.+....+..+..++.++.+++++|.+++  ..+..+
T Consensus       108 ~~~~~~-~~~----------------~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~--~~~~~~  168 (266)
T d1p9ag_         108 SFNRLT-SLP----------------LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL  168 (266)
T ss_dssp             CSSCCC-CCC----------------SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CCTTTT
T ss_pred             cccccc-eee----------------ccccccccccccccccccccceeccccccccccchhcccccccccc--cCcccc
Confidence            666554 222                2345677899999999999986556667889999999999999996  556678


Q ss_pred             hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      ..+++|++|+|++|+++. +|.. +..+++|+.|+     +.++|+.|+|++
T Consensus       169 ~~l~~L~~L~Ls~N~L~~-lp~~-~~~~~~L~~L~-----L~~Np~~CdC~~  213 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLYT-IPKG-FFGSHLLPFAF-----LHGNPWLCNCEI  213 (266)
T ss_dssp             TTCTTCCEEECCSSCCCC-CCTT-TTTTCCCSEEE-----CCSCCBCCSGGG
T ss_pred             ccccccceeecccCCCcc-cChh-HCCCCCCCEEE-----ecCCCCCCCcch
Confidence            899999999999999995 5666 67899999999     566688999975

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-23  Score=164.45  Aligned_cols=197  Identities=20%  Similarity=0.168  Sum_probs=135.4

Q ss_pred             cccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhh-hcCCCCCc--cccCCCCCcEE
Q 041723           21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIA-YCKENFLP--SLGNLTKLNDL   93 (228)
Q Consensus        21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~-~~~~~~~p--~~~~l~~L~~L   93 (228)
                      ++++|++++|.   +| .+|..+++|++||+++|.+....+..+..+..++.+.  .. .+.+..++  .++++++|++|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~--~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD--LSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccc--cccccccccccchhhcccccCCEE
Confidence            45666666665   23 2456666666666666666555555555555555443  32 33334443  55556666666


Q ss_pred             EeeCCcCCCCCCChhhcccc-------ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723           94 YLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS  166 (228)
Q Consensus        94 ~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  166 (228)
                      ++++|.+.+..+..+.....       .+.+++..+..+..+++|++|++++|.+.+..+..|.++++|+.+++++|.++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            66666654322333332222       22333333445677889999999999998666778899999999999999999


Q ss_pred             cCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723          167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI  227 (228)
Q Consensus       167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~  227 (228)
                      +  ..|..|..+++++++++++|.+.+..+.. +..+++|++++     ++++++.|+|++
T Consensus       191 ~--i~~~~f~~l~~L~~L~l~~N~i~~~~~~~-~~~~~~L~~L~-----l~~N~l~C~C~~  243 (284)
T d1ozna_         191 H--VHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLR-----LNDNPWVCDCRA  243 (284)
T ss_dssp             E--ECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCEEE-----CCSSCEECSGGG
T ss_pred             c--cChhHhhhhhhcccccccccccccccccc-cccccccCEEE-----ecCCCCCCCccc
Confidence            7  67889999999999999999999988877 89999999999     555567888864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=2e-23  Score=167.87  Aligned_cols=192  Identities=22%  Similarity=0.254  Sum_probs=161.8

Q ss_pred             cccccccCCCC------hHHHHhccCCCCeeecCC-ccCCCCcchhccCCcchHHHHHhhhhcCCC-CCc-cccCCCCCc
Q 041723           21 NAMKTLLQSPS------LANLAEKLANLKVLHLGQ-VNTASTVPYASANLSSLFSLLSLIAYCKEN-FLP-SLGNLTKLN   91 (228)
Q Consensus        21 ~l~~l~l~~~~------l~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~-~~p-~~~~l~~L~   91 (228)
                      +++.|+++++.      +|+.++++++|++||+++ |.+++.+|.+++.+++|++|+  +++|++. ..+ .+..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~--Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY--ITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE--EEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhh--hccccccccccccccchhhhc
Confidence            68889998875      678999999999999987 789889999999999999999  9999994 444 788899999


Q ss_pred             EEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCC-CEEeccCCccccc-------------------
Q 041723           92 DLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQL-HILRLAENQLEGS-------------------  144 (228)
Q Consensus        92 ~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L-~~L~ls~n~l~~~-------------------  144 (228)
                      .+++++|.+.+.+|..++.++..       +.+.+.+|..+..+..+ +.+++++|.+++.                   
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999988999999888773       44567788887777665 6677777766543                   


Q ss_pred             ----CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723          145 ----VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       145 ----~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (228)
                          .|..+..+++++.+++++|.+++  . ++.+..+++++.|++++|++++.+|.. ++++++|++|++++|++++
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~--~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAF--D-LGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECC--B-GGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccc--c-ccccccccccccccCccCeecccCChH-HhCCCCCCEEECcCCcccc
Confidence                34455677888888888888875  4 456888899999999999999999998 9999999999999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=148.04  Aligned_cols=169  Identities=23%  Similarity=0.282  Sum_probs=147.1

Q ss_pred             CCCcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      +++++|+++.+.+.+|+.+++|++|++++|.+.  +.+..+++|++|++++|++.. .+..+..+++|+.|+  +++|.+
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~--l~~~~~  112 (266)
T d1p9ag_          36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLD--VSFNRL  112 (266)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEE--CCSSCC
T ss_pred             EECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc--cccccc
Confidence            467899999999999999999999999999843  245789999999999999875 567789999999999  999999


Q ss_pred             CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723           79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR  156 (228)
Q Consensus        79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  156 (228)
                      ..++  .+..+.+++.|++.+|.++ .+|..                .+..+++++.+++++|.+++..+..+..+++|+
T Consensus       113 ~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~----------------~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         113 TSLPLGALRGLGELQELYLKGNELK-TLPPG----------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             CCCCSSTTTTCTTCCEEECTTSCCC-CCCTT----------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             ceeeccccccccccccccccccccc-eeccc----------------cccccccchhcccccccccccCccccccccccc
Confidence            6666  7788999999999999998 55533                245678999999999999976667789999999


Q ss_pred             EEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723          157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS  192 (228)
Q Consensus       157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~  192 (228)
                      +|++++|.++   .+|..+..+.+|+.++|++|++.
T Consensus       176 ~L~Ls~N~L~---~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         176 TLLLQENSLY---TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EEECCSSCCC---CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             eeecccCCCc---ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999998   68888888999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=5.6e-20  Score=146.91  Aligned_cols=214  Identities=15%  Similarity=0.193  Sum_probs=151.5

Q ss_pred             CCCcCCcccccchhhhcccccccccccCCCC---h-HHHHhccCCCCeeecCCccCCCCcchhccCCc------------
Q 041723            1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---L-ANLAEKLANLKVLHLGQVNTASTVPYASANLS------------   64 (228)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~------------   64 (228)
                      +++++|+++.+++.+|.++++|+++++.++.   + |..+.++++|++|++++|+++......+..+.            
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l  115 (305)
T d1xkua_          36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV  115 (305)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB
T ss_pred             EECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhh
Confidence            3677888888888888888899999988887   3 56788888889998888877643222221111            


Q ss_pred             ---------chHHHHHhhhhcCC---CCCc-cccCCCCCcEEEeeCCcCCCCCCChh-hcccc----ccccccccchhhh
Q 041723           65 ---------SLFSLLSLIAYCKE---NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSL-GDLLQ----LNYLTGEILVEIR  126 (228)
Q Consensus        65 ---------~L~~L~~~l~~~~~---~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~----~~~l~~~~~~~~~  126 (228)
                               ....+.  ...+..   ...+ .+..+++|+.+++.+|.+. .+|..+ ..+..    .+......+..+.
T Consensus       116 ~~~~~~~~~~~~~l~--~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~  192 (305)
T d1xkua_         116 RKSVFNGLNQMIVVE--LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLK  192 (305)
T ss_dssp             CHHHHTTCTTCCEEE--CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGT
T ss_pred             hhhhhhccccccccc--cccccccccCCCccccccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCCChhHhh
Confidence                     111122  222222   1112 4566778888888888876 454432 12222    2334456667788


Q ss_pred             cCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc-----ccC
Q 041723          127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT-----VNT  201 (228)
Q Consensus       127 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~  201 (228)
                      .++.++.|++++|.+.+..+..+..+++|++|++++|.++   .+|.++..+++|++|++++|+++......     ...
T Consensus       193 ~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~---~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             ccccccccccccccccccccccccccccceeeeccccccc---ccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence            8899999999999998766778889999999999999998   67888999999999999999998764433     134


Q ss_pred             CCCCcccccccccccccCc
Q 041723          202 NLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       202 ~l~~L~~l~l~~n~~~~~~  220 (228)
                      ..++|+.+++++|+++.++
T Consensus       270 ~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         270 KKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             TSCCCSEEECCSSSSCGGG
T ss_pred             ccCCCCEEECCCCcCccCc
Confidence            5788999999999887544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=5.9e-19  Score=140.88  Aligned_cols=205  Identities=22%  Similarity=0.167  Sum_probs=150.9

Q ss_pred             CcccccchhhhcccccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC
Q 041723            6 TRKKKIATAAYGTASNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL   81 (228)
Q Consensus         6 ~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~   81 (228)
                      .+.+.+++ .+.  +++++|++++|.   +|+ +|..+++|++|++++|.+....|.+|..+++|++|+  +++|++..+
T Consensus        20 ~~L~~lP~-~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~--l~~n~l~~l   94 (305)
T d1xkua_          20 LGLEKVPK-DLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY--LSKNQLKEL   94 (305)
T ss_dssp             SCCCSCCC-SCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE--CCSSCCSBC
T ss_pred             CCCCccCC-CCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec--ccCCccCcC
Confidence            34555543 333  489999999997   554 788999999999999999988888999999999999  999999888


Q ss_pred             ccccCCCCCcEEEeeCCcCCCCCCCh-hhcccccc---------ccccccchhhh---------------------cCCC
Q 041723           82 PSLGNLTKLNDLYLFGNDFSGKVPDS-LGDLLQLN---------YLTGEILVEIR---------------------KLTQ  130 (228)
Q Consensus        82 p~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~---------~l~~~~~~~~~---------------------~l~~  130 (228)
                      |.. ....++.|++..|.+.+ ++.. +.......         ......+..+.                     ..++
T Consensus        95 ~~~-~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~  172 (305)
T d1xkua_          95 PEK-MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS  172 (305)
T ss_dssp             CSS-CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred             ccc-hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCc
Confidence            821 23578888888888773 3321 11111100         00011111111                     2356


Q ss_pred             CCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccc
Q 041723          131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG  210 (228)
Q Consensus       131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~  210 (228)
                      ++.|++++|......+..+..++.++.|++++|.+++  ..+.++.++++|++|+|++|.++.. |.. +..+++|++|+
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~--~~~~~~~~l~~L~~L~L~~N~L~~l-p~~-l~~l~~L~~L~  248 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKV-PGG-LADHKYIQVVY  248 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSC-CTT-TTTCSSCCEEE
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccc--cccccccccccceeeeccccccccc-ccc-cccccCCCEEE
Confidence            7777777777776667778888999999999999886  5577888999999999999999865 566 88899999999


Q ss_pred             ccccccccCcc
Q 041723          211 SVHETLASSHI  221 (228)
Q Consensus       211 l~~n~~~~~~~  221 (228)
                      +++|+++..+.
T Consensus       249 Ls~N~i~~i~~  259 (305)
T d1xkua_         249 LHNNNISAIGS  259 (305)
T ss_dssp             CCSSCCCCCCT
T ss_pred             CCCCccCccCh
Confidence            99999987543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.2e-19  Score=139.50  Aligned_cols=183  Identities=19%  Similarity=0.137  Sum_probs=150.2

Q ss_pred             hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee-CCcCCCCCCChh
Q 041723           32 LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF-GNDFSGKVPDSL  108 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~-~n~l~~~~p~~~  108 (228)
                      +|..+.  +.+++|++++|+++...+.+|..+++|++|+  +++|.+..++  .+..+..++.+... .+.+....+..+
T Consensus        26 iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~--ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW--LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccc--cccccccccccccccccccccccccccccccccccchhh
Confidence            555443  5789999999999877778899999999999  9999996666  77778889998865 555664446667


Q ss_pred             hcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCC
Q 041723          109 GDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL  181 (228)
Q Consensus       109 ~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L  181 (228)
                      ..++++..+       ....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|.++.  ..+.++.++++|
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~--l~~~~f~~l~~L  179 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSL  179 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTC
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc--cchhhhcccccc
Confidence            777764433       33445566778899999999999996556778899999999999999986  456788899999


Q ss_pred             CEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          182 TALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       182 ~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      +.+++++|.+++..|.. +.++++|+++++++|++.+.+.
T Consensus       180 ~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             CEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCH
T ss_pred             chhhhhhccccccChhH-hhhhhhcccccccccccccccc
Confidence            99999999999988888 9999999999999999987654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.9e-18  Score=132.41  Aligned_cols=183  Identities=20%  Similarity=0.234  Sum_probs=133.4

Q ss_pred             hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723           15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND   92 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~   92 (228)
                      ..+.+.+|+.+++.++.+.  +.+.++++|++|++++|.+.+..+  +..++++++++  +++|.+..++.+.++++|+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~--~~~n~~~~i~~l~~l~~L~~  111 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE--LSGNPLKNVSAIAGLQSIKT  111 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE--CCSCCCSCCGGGTTCTTCCE
T ss_pred             CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccc--cccccccccccccccccccc
Confidence            4566778899999988742  357889999999999998876443  78889999988  99998888888888999999


Q ss_pred             EEeeCCcCCCCCCChhhcccccccc-----ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723           93 LYLFGNDFSGKVPDSLGDLLQLNYL-----TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG  167 (228)
Q Consensus        93 L~l~~n~l~~~~p~~~~~l~~~~~l-----~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  167 (228)
                      ++++++...+. + .+...+....+     .......+..+++|+++++++|.+.+.  ..++.+++|+.|++++|.+++
T Consensus       112 l~l~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccc-c-hhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            99988887632 1 12222221111     011222356777888888888888632  237788888888888888873


Q ss_pred             CCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccc
Q 041723          168 TGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSV  212 (228)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~  212 (228)
                         +++ +.++++|++|++++|++++..+   ++++++|++|+++
T Consensus       188 ---l~~-l~~l~~L~~L~Ls~N~lt~i~~---l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 ---ISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT  225 (227)
T ss_dssp             ---CGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEE
T ss_pred             ---Chh-hcCCCCCCEEECcCCcCCCCcc---cccCCCCCEEEee
Confidence               444 7788888888888888886543   6788888888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-18  Score=130.80  Aligned_cols=161  Identities=27%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             ccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeC
Q 041723           20 SNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG   97 (228)
Q Consensus        20 ~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~   97 (228)
                      .++++++++++.+.  ..+..+++|++|++++|.+++..  .++.+++|++|+  +++|++..+|.+..+++|+.+++.+
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~--l~~n~i~~l~~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLF--LDENKVKDLSSLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE--CCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc--ccccCccccccc--ccccccccccccccccccccccccc
Confidence            34444444444421  12444555555555555444322  134445555555  5555554444444455555555554


Q ss_pred             CcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhc
Q 041723           98 NDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN  177 (228)
Q Consensus        98 n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~  177 (228)
                      |.+. .+                  ..+..+++++++++++|.+.+  +..+..+++|+.+++++|.+++   +++ +.+
T Consensus       122 ~~~~-~~------------------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~---i~~-l~~  176 (210)
T d1h6ta2         122 NGIS-DI------------------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---IVP-LAG  176 (210)
T ss_dssp             SCCC-CC------------------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC---CGG-GTT
T ss_pred             cccc-cc------------------ccccccccccccccccccccc--cccccccccccccccccccccc---ccc-ccC
Confidence            4443 11                  134566677777777777763  2345667777777777777763   433 667


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCccccccc
Q 041723          178 LESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSV  212 (228)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~  212 (228)
                      +++|++|++++|++++. + . +.++++|++|+++
T Consensus       177 l~~L~~L~Ls~N~i~~l-~-~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDL-R-A-LAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCCEEECCSSCCCBC-G-G-GTTCTTCSEEEEE
T ss_pred             CCCCCEEECCCCCCCCC-h-h-hcCCCCCCEEEcc
Confidence            77777777777777653 2 3 5677777777754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-18  Score=129.70  Aligned_cols=168  Identities=26%  Similarity=0.354  Sum_probs=98.7

Q ss_pred             cccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCC
Q 041723           21 NAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN   98 (228)
Q Consensus        21 ~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n   98 (228)
                      +.....++.+.+.+  ...++.++++|++++|.+...  +.++.+++|++|+  +++|++..++.++++++|++|++++|
T Consensus        19 ~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~--Ls~N~l~~~~~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQIN--FSNNQLTDITPLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEE--CCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCc--cccccccCcccccCCccccccccccc
Confidence            33444555554332  233456677777777766542  2356667777777  77777766666666777777777776


Q ss_pred             cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723           99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .+. .++                  .+..++.|+.++++++.... . ..+..+++|+.+++++|.+.   .++ .+..+
T Consensus        95 ~~~-~~~------------------~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~---~~~-~l~~~  149 (199)
T d2omxa2          95 QIA-DIT------------------PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS---DIS-ALSGL  149 (199)
T ss_dssp             CCC-CCG------------------GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC---CCG-GGTTC
T ss_pred             ccc-ccc------------------cccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc---ccc-ccccc
Confidence            665 222                  13455666666666666652 2 23556666666666666665   233 35566


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723          179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      ++++.+++++|.+++..  . ++++++|++|++++|++++.+
T Consensus       150 ~~L~~L~l~~n~l~~l~--~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         150 TSLQQLNFSSNQVTDLK--P-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             TTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccCCc--c-ccCCCCCCEEECCCCCCCCCc
Confidence            66666666666666542  2 456666666666666666544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=8.7e-18  Score=137.45  Aligned_cols=186  Identities=26%  Similarity=0.294  Sum_probs=145.4

Q ss_pred             hhhhcccccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCC
Q 041723           13 TAAYGTASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKL   90 (228)
Q Consensus        13 ~~~~~~l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L   90 (228)
                      ......++++..+++.++.+..  ......+|++|++++|.++..  +.+..+++|+.++  +++|.+..++.+..+++|
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~--l~~n~l~~~~~~~~~~~L  265 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD--LANNQISNLAPLSGLTKL  265 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE--CCSSCCCCCGGGTTCTTC
T ss_pred             ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--chhhcccccchhc--cccCccCCCCcccccccC
Confidence            4556777888999998887432  356678899999999988763  4678889999999  999999888778888999


Q ss_pred             cEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCC
Q 041723           91 NDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDN  163 (228)
Q Consensus        91 ~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (228)
                      +.++++++.+++ ++. +..+...       +.+.+  +..+..+++++++++++|.+.+. + .+..+++|+.|++++|
T Consensus       266 ~~L~l~~~~l~~-~~~-~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         266 TELKLGANQISN-ISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSS
T ss_pred             CEeeccCcccCC-CCc-ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCC
Confidence            999999998873 332 3333332       22222  34567888999999999999853 3 3889999999999999


Q ss_pred             ccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccc
Q 041723          164 NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET  215 (228)
Q Consensus       164 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~  215 (228)
                      .+++   ++ .+.++++|++|++++|++++..|   +.++++|++|++++|.
T Consensus       340 ~l~~---l~-~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         340 KVSD---VS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCCC---CG-GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCEE
T ss_pred             CCCC---Ch-hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCCc
Confidence            9984   54 58889999999999999998754   6789999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=6.7e-18  Score=126.81  Aligned_cols=161  Identities=26%  Similarity=0.388  Sum_probs=135.5

Q ss_pred             cccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEE
Q 041723           17 GTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLY   94 (228)
Q Consensus        17 ~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~   94 (228)
                      ..+.+++++++.++.+.  +.++.+++|++|++++|.+++..+  +..+++|++|+  +++|.+..++.+.+++.|+.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~--l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL--MNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE--CCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccc--cccccccccccccccccccccc
Confidence            45678999999999854  358889999999999999987543  89999999999  9999998888888999999999


Q ss_pred             eeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchh
Q 041723           95 LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV  174 (228)
Q Consensus        95 l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~  174 (228)
                      +++|.... ++                  .+..+++|+.+++++|.+. .++ .+..+++|+.+++.+|.+++   +++ 
T Consensus       113 l~~~~~~~-~~------------------~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~---l~~-  167 (199)
T d2omxa2         113 LFNNQITD-ID------------------PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD---LKP-  167 (199)
T ss_dssp             CCSSCCCC-CG------------------GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC---CGG-
T ss_pred             cccccccc-cc------------------ccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC---Ccc-
Confidence            99998762 22                  2457889999999999997 444 58899999999999999984   444 


Q ss_pred             hhcCCCCCEEEccCCccccccCccccCCCCCcccc
Q 041723          175 LLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII  209 (228)
Q Consensus       175 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l  209 (228)
                      ++++++|++|++++|++++..  . ++.+++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~--~-l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDIS--V-LAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCCc--c-ccCCCCCCcC
Confidence            889999999999999998742  3 6778888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.7e-17  Score=133.01  Aligned_cols=91  Identities=30%  Similarity=0.381  Sum_probs=65.4

Q ss_pred             hhcCCCCCEEeccCCcccccC--------------------ccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEE
Q 041723          125 IRKLTQLHILRLAENQLEGSV--------------------PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL  184 (228)
Q Consensus       125 ~~~l~~L~~L~ls~n~l~~~~--------------------~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L  184 (228)
                      ++.+++|+.++++++.+.+..                    ...+..+++++.+++++|.+++   +++ +..+++|++|
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~---l~~-l~~l~~L~~L  334 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD---ISP-VSSLTKLQRL  334 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC---CGG-GGGCTTCCEE
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC---Ccc-cccCCCCCEE
Confidence            455666666666666554211                    1235666778888888888774   443 7888999999


Q ss_pred             EccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          185 VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++++|++++. + . +.++++|++|++++|++++.+..
T Consensus       335 ~L~~n~l~~l-~-~-l~~l~~L~~L~l~~N~l~~l~~l  369 (384)
T d2omza2         335 FFANNKVSDV-S-S-LANLTNINWLSAGHNQISDLTPL  369 (384)
T ss_dssp             ECCSSCCCCC-G-G-GGGCTTCCEEECCSSCCCBCGGG
T ss_pred             ECCCCCCCCC-h-h-HcCCCCCCEEECCCCcCCCChhh
Confidence            9999999864 3 4 77899999999999999875533

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.3e-17  Score=126.29  Aligned_cols=170  Identities=20%  Similarity=0.295  Sum_probs=138.6

Q ss_pred             cccccccCCCChHHH--HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCC
Q 041723           21 NAMKTLLQSPSLANL--AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN   98 (228)
Q Consensus        21 ~l~~l~l~~~~l~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n   98 (228)
                      +.....++.+.+.+.  ...+..+++|++++|.+....  .+..+++|++|+  +++|.+..++.++.+++|++|++++|
T Consensus        25 ~~i~~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~--L~~n~i~~l~~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLF--LNGNKLTDIKPLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEE--CCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHHhCcCccCCccCHHHhcCccEEECcCCCCCCch--hHhhCCCCCEEe--CCCccccCccccccCccccccccccc
Confidence            445556666665442  235779999999999987632  478899999999  99999988887889999999999999


Q ss_pred             cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723           99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus        99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      .++ .++                  .+..+++|+.+++++|.+. .+ ..+..++.++.+++++|.+++    +..+..+
T Consensus       101 ~i~-~l~------------------~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~----~~~~~~l  155 (210)
T d1h6ta2         101 KVK-DLS------------------SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD----ITVLSRL  155 (210)
T ss_dssp             CCC-CGG------------------GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC----CGGGGGC
T ss_pred             ccc-ccc------------------ccccccccccccccccccc-cc-ccccccccccccccccccccc----ccccccc
Confidence            987 333                  2567889999999999987 34 458899999999999999974    3457789


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723          179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF  222 (228)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  222 (228)
                      ++|+.+++++|++++..  . +.++++|++|++++|++++.+..
T Consensus       156 ~~L~~l~l~~n~l~~i~--~-l~~l~~L~~L~Ls~N~i~~l~~l  196 (210)
T d1h6ta2         156 TKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLRAL  196 (210)
T ss_dssp             TTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCGGG
T ss_pred             ccccccccccccccccc--c-ccCCCCCCEEECCCCCCCCChhh
Confidence            99999999999998753  3 77899999999999999876543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1e-16  Score=122.60  Aligned_cols=188  Identities=24%  Similarity=0.306  Sum_probs=147.7

Q ss_pred             cccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEee
Q 041723           19 ASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLF   96 (228)
Q Consensus        19 l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~   96 (228)
                      +.+...++++.+.+.+  ....+.+|+.|++.+|.++..  +.+..+++|++|+  +++|.+..++.+..+++++.++++
T Consensus        18 l~~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~--ls~n~i~~~~~l~~l~~l~~l~~~   93 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLE--LKDNQITDLAPLKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEE--CCSSCCCCCGGGTTCCSCCEEECC
T ss_pred             HHHHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEee--cCCceeeccccccccccccccccc
Confidence            3455667787777655  446788999999999998764  4588999999999  999999877778999999999999


Q ss_pred             CCcCCCCCCChhhccccccccc-----cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCc
Q 041723           97 GNDFSGKVPDSLGDLLQLNYLT-----GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL  171 (228)
Q Consensus        97 ~n~l~~~~p~~~~~l~~~~~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  171 (228)
                      +|.++ .++ .++.++.+..+.     ......+...+.+..+.++++.+...  ..+..+++|+.+++++|.+++   .
T Consensus        94 ~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~---~  166 (227)
T d1h6ua2          94 GNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD---L  166 (227)
T ss_dssp             SCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC---C
T ss_pred             ccccc-ccc-cccccccccccccccccccccchhccccchhhhhchhhhhchh--hhhcccccccccccccccccc---c
Confidence            99887 443 455555544332     12233456677889999998888733  347789999999999999874   3


Q ss_pred             chhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723          172 NMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI  221 (228)
Q Consensus       172 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  221 (228)
                      ++ +.++++|++|++++|++++..  . ++++++|++|++++|++++.+.
T Consensus       167 ~~-l~~l~~L~~L~Ls~n~l~~l~--~-l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         167 TP-LANLSKLTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCCCBCGG
T ss_pred             hh-hcccccceecccCCCccCCCh--h-hcCCCCCCEEECcCCcCCCCcc
Confidence            33 788999999999999998753  3 6789999999999999998654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1e-16  Score=119.49  Aligned_cols=129  Identities=23%  Similarity=0.280  Sum_probs=84.8

Q ss_pred             CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC-CCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723           42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN-FLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT  118 (228)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~-~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~  118 (228)
                      .++++.++++++. +|..+.  +++++|+  +++|.+. .++  .|.++++|++|++++|.+.+..+.            
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~--Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~------------   72 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELL--LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------   72 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEE--CCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEE--eCCCCCcccccccccCCCceEeeeecccccccccccc------------
Confidence            3567777777764 444332  4566777  7777773 343  566777777777777777632222            


Q ss_pred             cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723          119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL  194 (228)
Q Consensus       119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  194 (228)
                           .+..+++|+.|++++|.+....+..|.++++|+.|++++|.++.  ..+.+|..+++|++++|++|++...
T Consensus        73 -----~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~--i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          73 -----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             -----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             -----ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc--cCHHHhcCCcccccccccccccccc
Confidence                 24556677777777777775555667777777777777777774  3455667777777777777777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.8e-17  Score=123.71  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=123.2

Q ss_pred             cccccCCCC---hHHHHhccCCCCeeecCCccCCCC-cchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee
Q 041723           23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTAST-VPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF   96 (228)
Q Consensus        23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~   96 (228)
                      ..++.+++.   +|..+.  +++++|++++|.++.. .+..|..+++|+.|+  +++|.+..++  .+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~--L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE--LKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEE--CCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeee--ccccccccccccccccccccceeeec
Confidence            345555554   565543  6899999999999764 467789999999999  9999996665  88889999999999


Q ss_pred             CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh
Q 041723           97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL  176 (228)
Q Consensus        97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~  176 (228)
                      +|+++ .+|..                .|.++++|++|++++|.++...++.|..+++|+++++++|.+..... ..++.
T Consensus        87 ~N~l~-~l~~~----------------~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~  148 (192)
T d1w8aa_          87 ENKIK-EISNK----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFA  148 (192)
T ss_dssp             SCCCC-EECSS----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHH
T ss_pred             ccccc-ccCHH----------------HHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHh
Confidence            99998 44432                35678999999999999997667788999999999999999874111 12222


Q ss_pred             cCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723          177 NLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL  216 (228)
Q Consensus       177 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~  216 (228)
                        ..++...+..+.++...|..    +..++.++++.|.+
T Consensus       149 --~~l~~~~l~~~~~~c~~p~~----l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         149 --EWLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEF  182 (192)
T ss_dssp             --HHHHHHCCSGGGCBBCSSTT----TTTSBGGGSCTTTC
T ss_pred             --hhhhhhcccCCCeEeCCChh----hcCCEeeecCHhhC
Confidence              22445566677776554544    55667778555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.6e-16  Score=120.31  Aligned_cols=186  Identities=18%  Similarity=0.217  Sum_probs=133.7

Q ss_pred             ccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCCc-chhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCc
Q 041723           20 SNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTASTV-PYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLN   91 (228)
Q Consensus        20 ~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~   91 (228)
                      +++++|++++|.   +|+ +|.++++|++|++++|.+...+ +.+|..++.++++.  +.. +.+...+  .+.++++|+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~--~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE--EECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc--cccccccccccccccccccccc
Confidence            478999999998   444 6889999999999999887644 46788899988887  654 4564444  688999999


Q ss_pred             EEEeeCCcCCCCCCC--hhhcccc-------ccccccccchhhhcCC-CCCEEeccCCcccccCccccccCCCCCEE-Ec
Q 041723           92 DLYLFGNDFSGKVPD--SLGDLLQ-------LNYLTGEILVEIRKLT-QLHILRLAENQLEGSVPSSIFELRNLRAL-DL  160 (228)
Q Consensus        92 ~L~l~~n~l~~~~p~--~~~~l~~-------~~~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L-~l  160 (228)
                      ++++.+|.+. ..+.  .+..+..       .+.+....+..+..++ .++.+++++|.+.. ++.......++..+ .+
T Consensus       107 ~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l  184 (242)
T d1xwdc1         107 YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLS  184 (242)
T ss_dssp             EEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECT
T ss_pred             ccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccc
Confidence            9999999987 3332  1222222       1122222233444443 68889999999984 44444455555555 56


Q ss_pred             cCCccccCCCcch-hhhcCCCCCEEEccCCccccccCccccCCCCCcccccccc
Q 041723          161 SDNNLSGTGDLNM-VLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVH  213 (228)
Q Consensus       161 ~~n~~~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~  213 (228)
                      ++|.++   .+|. .|.++++|++|++++|+++..++.. +.++++|+++++++
T Consensus       185 ~~n~l~---~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         185 DNNNLE---ELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYN  234 (242)
T ss_dssp             TCTTCC---CCCTTTTTTSCCCSEEECTTSCCCCCCSSS-CTTCCEEESSSEES
T ss_pred             cccccc---cccHHHhcCCCCCCEEECCCCcCCccCHHH-HcCCcccccCcCCC
Confidence            777887   4554 5788999999999999999776666 88999999888754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2.8e-15  Score=103.80  Aligned_cols=99  Identities=27%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             hhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccC
Q 041723           73 IAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL  152 (228)
Q Consensus        73 l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  152 (228)
                      +++|.+..++.+.++++|++|++++|.++ .+|+.                 ++.+++|+.|++++|.++ .+| .+..+
T Consensus         5 Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~-----------------~~~l~~L~~L~l~~N~i~-~l~-~~~~l   64 (124)
T d1dcea3           5 LAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPA-----------------LAALRCLEVLQASDNALE-NVD-GVANL   64 (124)
T ss_dssp             CTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGG-----------------GGGCTTCCEEECCSSCCC-CCG-GGTTC
T ss_pred             cCCCCCCCCcccccCCCCCEEECCCCccC-cchhh-----------------hhhhhccccccccccccc-ccC-ccccc
Confidence            44444444444445555555555555554 33322                 234455555555555555 233 25555


Q ss_pred             CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723          153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS  192 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~  192 (228)
                      ++|+.+++++|.++++.. ...+..+++|+++++++|+++
T Consensus        65 ~~L~~L~l~~N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCEEECCSSCCCSSST-TGGGGGCTTCCEEECTTSGGG
T ss_pred             cccCeEECCCCccCCCCC-chhhcCCCCCCEEECCCCcCC
Confidence            555555555555553111 123445555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=110.57  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=29.8

Q ss_pred             ccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCC
Q 041723           38 KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        38 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~  101 (228)
                      +..++++||+++|+++.. +..+..+++|++|+  +++|.+..++.+..+++|++|++++|.++
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~--Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAID--FSDNEIRKLDGFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEE--CCSSCCCEECCCCCCSSCCEEECCSSCCC
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEE--CCCCCCCccCCcccCcchhhhhccccccc
Confidence            344555566655555442 33334444455555  55555444444444445555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.3e-14  Score=100.37  Aligned_cols=105  Identities=26%  Similarity=0.389  Sum_probs=90.0

Q ss_pred             cEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCC
Q 041723           91 NDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD  170 (228)
Q Consensus        91 ~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  170 (228)
                      |+|++++|.++ .++                  .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.++   .
T Consensus         1 R~L~Ls~n~l~-~l~------------------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~---~   57 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC------------------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---N   57 (124)
T ss_dssp             SEEECTTSCCS-SCC------------------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---C
T ss_pred             CEEEcCCCCCC-CCc------------------ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc---c
Confidence            57999999998 444                  2457789999999999998 67888999999999999999998   4


Q ss_pred             cchhhhcCCCCCEEEccCCccccccC-ccccCCCCCcccccccccccccCc
Q 041723          171 LNMVLLNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       171 ~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~  220 (228)
                      +|. +..+++|+++++++|++++... .. +..+++|+++++++|+++..+
T Consensus        58 l~~-~~~l~~L~~L~l~~N~i~~~~~~~~-l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          58 VDG-VANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CGG-GTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred             cCc-cccccccCeEECCCCccCCCCCchh-hcCCCCCCEEECCCCcCCcCc
Confidence            554 8899999999999999987643 45 788999999999999997643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-15  Score=110.60  Aligned_cols=129  Identities=21%  Similarity=0.179  Sum_probs=101.3

Q ss_pred             ccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccC
Q 041723           60 SANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAE  138 (228)
Q Consensus        60 ~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~  138 (228)
                      +....++++|+  +++|++..++ .+..+++|++|++++|.++ .++                  .+..+++|++|++++
T Consensus        14 ~~n~~~lr~L~--L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~------------------~~~~l~~L~~L~ls~   72 (162)
T d1a9na_          14 YTNAVRDRELD--LRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLD------------------GFPLLRRLKTLLVNN   72 (162)
T ss_dssp             EECTTSCEEEE--CTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EEC------------------CCCCCSSCCEEECCS
T ss_pred             ccCcCcCcEEE--CCCCCCCccCccccccccCCEEECCCCCCC-ccC------------------CcccCcchhhhhccc
Confidence            55667888999  9999998888 5677899999999999987 333                  245778999999999


Q ss_pred             CcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC---ccccCCCCCcccccc
Q 041723          139 NQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG---TTVNTNLPNFTIIGS  211 (228)
Q Consensus       139 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~l~l  211 (228)
                      |.+....+..+..+++|+.|++++|.++++..+ ..+..+++|+++++++|+++....   .. +..+|+|++||-
T Consensus        73 N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~-i~~lp~L~~LD~  146 (162)
T d1a9na_          73 NRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYV-IYKVPQVRVLDF  146 (162)
T ss_dssp             SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHH-HHHCTTCSEETT
T ss_pred             ccccCCCccccccccccccceeccccccccccc-cccccccccchhhcCCCccccccchHHHH-HHHCCCcCeeCC
Confidence            999854444567899999999999999853121 357888999999999999976532   23 677899998883

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-15  Score=115.85  Aligned_cols=184  Identities=16%  Similarity=0.135  Sum_probs=127.1

Q ss_pred             hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc--cccCCCCCcEEEeeC-CcCCCCCCCh
Q 041723           32 LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP--SLGNLTKLNDLYLFG-NDFSGKVPDS  107 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p--~~~~l~~L~~L~l~~-n~l~~~~p~~  107 (228)
                      +|+.+.  .++++||+++|.++...+.+|.++++|++|+  +++|.+ ..++  .+..++.++.+.+.. |.+....+..
T Consensus        23 iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~--ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          23 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIE--ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEE--EESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhh--hccccccceeecccccccccccccccccccccccccccc
Confidence            555443  5899999999999876667899999999999  999998 4455  678899999999865 5666444555


Q ss_pred             hhcccccccc-------ccc-cchhhhcCCCCCEEeccCCcccccCccccccC-CCCCEEEccCCccccCCCcchhhhcC
Q 041723          108 LGDLLQLNYL-------TGE-ILVEIRKLTQLHILRLAENQLEGSVPSSIFEL-RNLRALDLSDNNLSGTGDLNMVLLNL  178 (228)
Q Consensus       108 ~~~l~~~~~l-------~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~p~~~~~l  178 (228)
                      +..++.+..+       ... ....+..+..+..+...++.+....+..+.++ ..++.+++++|.++.   ++......
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~---i~~~~~~~  175 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---IHNCAFNG  175 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---ECTTTTTT
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc---cccccccc
Confidence            5555553333       111 11122334444455555656653333445544 478889999998884   44444445


Q ss_pred             CCCCEE-EccCCccccccCccccCCCCCcccccccccccccCcccc
Q 041723          179 ESLTAL-VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC  223 (228)
Q Consensus       179 ~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  223 (228)
                      .++.++ .+++|.++...+.. +.++++|++|++++|+++..+...
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~-f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTT-TTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             hhhhccccccccccccccHHH-hcCCCCCCEEECCCCcCCccCHHH
Confidence            555555 56888898776666 899999999999999999765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=6.5e-14  Score=112.47  Aligned_cols=88  Identities=19%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             CcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCC-cchHHHHHhhhhcCCCCC
Q 041723            3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANL-SSLFSLLSLIAYCKENFL   81 (228)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~~~l~~~~~~~~   81 (228)
                      ++++.++.++.    ..++|++|++++|.+...-....+|++|++.+|+++.. +    .+ +.|++|+  +++|.+..+
T Consensus        45 Ls~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l-~----~lp~~L~~L~--L~~n~l~~l  113 (353)
T d1jl5a_          45 LNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL-S----DLPPLLEYLG--VSNNQLEKL  113 (353)
T ss_dssp             CTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCC-C----SCCTTCCEEE--CCSSCCSSC
T ss_pred             eCCCCCCCCCC----CCCCCCEEECCCCCCcccccchhhhhhhhhhhcccchh-h----hhcccccccc--ccccccccc
Confidence            44455554431    23466677777666332212234666777766665532 1    22 3477888  888888888


Q ss_pred             ccccCCCCCcEEEeeCCcCC
Q 041723           82 PSLGNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        82 p~~~~l~~L~~L~l~~n~l~  101 (228)
                      |.++.+++|+.++++++.+.
T Consensus       114 p~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         114 PELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCS
T ss_pred             cchhhhccceeecccccccc
Confidence            86677888888888888766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-14  Score=114.47  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=112.5

Q ss_pred             cccccccccccCCCC-----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-CC--CCc-cccCC
Q 041723           17 GTASNAMKTLLQSPS-----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK-EN--FLP-SLGNL   87 (228)
Q Consensus        17 ~~l~~l~~l~l~~~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~-~~--~~p-~~~~l   87 (228)
                      ....++++++++++.     ++..+..+++|++|++++|.+....+..+..+++|++|+  +++|. ++  .+. .+.++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~--Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN--LSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE--CTTCBSCCHHHHHHHHHHC
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcc--ccccccccccccchhhHHH
Confidence            345688999999886     345677899999999999998877788889999999999  99975 43  233 34578


Q ss_pred             CCCcEEEeeCCc-CCCC-CCChhhcc-cccccc---------cc-ccchhhhcCCCCCEEeccCCc-ccccCccccccCC
Q 041723           88 TKLNDLYLFGND-FSGK-VPDSLGDL-LQLNYL---------TG-EILVEIRKLTQLHILRLAENQ-LEGSVPSSIFELR  153 (228)
Q Consensus        88 ~~L~~L~l~~n~-l~~~-~p~~~~~l-~~~~~l---------~~-~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~  153 (228)
                      ++|+.|++++|. +++. +...+... +....+         +. .+..-...+++|++|++++|. +++.....+..++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            999999999874 3310 11111111 111111         11 122223456778888887754 5555556677778


Q ss_pred             CCCEEEccCC-ccccCCCcchhhhcCCCCCEEEccCC
Q 041723          154 NLRALDLSDN-NLSGTGDLNMVLLNLESLTALVLSSN  189 (228)
Q Consensus       154 ~L~~L~l~~n-~~~~~~~~p~~~~~l~~L~~L~L~~n  189 (228)
                      +|++|++++| .+++  .....+..+++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~--~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCCh--HHHHHHhcCCCCCEEeeeCC
Confidence            8888888875 4554  44445667778888888776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.1e-13  Score=95.85  Aligned_cols=92  Identities=22%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             hcCCCCCEEeccCCc-ccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC
Q 041723          126 RKLTQLHILRLAENQ-LEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP  204 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  204 (228)
                      ..+++++.|++++++ ++...+..|..+++|+.|++++|.++.  ..+..|.++++|++|+|++|+++...+.. +... 
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~~~-  103 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFNALESLSWKT-VQGL-  103 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSSCCSCCCSTT-TCSC-
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCC--cccccccccccccceeccCCCCcccChhh-hccc-
Confidence            345566666665543 553334456666667777777666664  33455666666777777777766554444 4333 


Q ss_pred             CcccccccccccccCccccccC
Q 041723          205 NFTIIGSVHETLASSHIFCTTK  226 (228)
Q Consensus       205 ~L~~l~l~~n~~~~~~~~~~~~  226 (228)
                      .|+.|+     ++++++.|+|+
T Consensus       104 ~l~~L~-----L~~Np~~C~C~  120 (156)
T d2ifga3         104 SLQELV-----LSGNPLHCSCA  120 (156)
T ss_dssp             CCCEEE-----CCSSCCCCCGG
T ss_pred             cccccc-----cCCCcccCCch
Confidence            466666     33345556664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.39  E-value=3.2e-15  Score=111.85  Aligned_cols=130  Identities=25%  Similarity=0.254  Sum_probs=85.6

Q ss_pred             cchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEe
Q 041723           56 VPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR  135 (228)
Q Consensus        56 ~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~  135 (228)
                      ++.++..+++|++|+  +++|.+..++.+..+++|+.|++++|.++ .+|...                 ..+++|++|+
T Consensus        40 l~~sl~~L~~L~~L~--Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~-----------------~~~~~L~~L~   99 (198)
T d1m9la_          40 MDATLSTLKACKHLA--LSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLD-----------------AVADTLEELW   99 (198)
T ss_dssp             CHHHHHHTTTCCEEE--CSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHH-----------------HHHHHCCEEE
T ss_pred             hhhHHhcccccceeE--CcccCCCCcccccCCccccChhhcccccc-cccccc-----------------cccccccccc
Confidence            455666666666666  66766666666667777888888888776 444321                 2234577788


Q ss_pred             ccCCcccccCccccccCCCCCEEEccCCccccCCCcc--hhhhcCCCCCEEEccCCccccccCcc---------ccCCCC
Q 041723          136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALVLSSNKLSLLAGTT---------VNTNLP  204 (228)
Q Consensus       136 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~l~  204 (228)
                      +++|.++ .++ .+..+++|+.|++++|.+++   ++  ..+..+++|+.|++++|++....+..         .+..+|
T Consensus       100 l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~---~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp  174 (198)
T d1m9la_         100 ISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             CSEEECC-CHH-HHHHHHHSSEEEESEEECCC---HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCS
T ss_pred             ccccccc-ccc-cccccccccccccccchhcc---ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCC
Confidence            8888776 333 46677788888888887763   33  35677788888888888776543321         134577


Q ss_pred             Cccccc
Q 041723          205 NFTIIG  210 (228)
Q Consensus       205 ~L~~l~  210 (228)
                      +|+.||
T Consensus       175 ~L~~LD  180 (198)
T d1m9la_         175 NLKKLD  180 (198)
T ss_dssp             SCCEES
T ss_pred             CcCEeC
Confidence            777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=2.8e-15  Score=112.17  Aligned_cols=133  Identities=20%  Similarity=0.228  Sum_probs=105.8

Q ss_pred             hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhc
Q 041723           32 LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD  110 (228)
Q Consensus        32 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~  110 (228)
                      ++..+..+++|++|++++|.++.. + .+..+++|++|+  +++|.+..+| ....+++|++|++++|.++ .++     
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~--Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~-~l~-----  109 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILS--LGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-----  109 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEE--CCEEEECSCSSHHHHHHHCCEEECSEEECC-CHH-----
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChh--hccccccccccccccccccccccccccccc-ccc-----
Confidence            567899999999999999999764 3 588899999999  9999998888 4455678999999999987 322     


Q ss_pred             cccccccccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccCCccccCCCcch----------hhhcC
Q 041723          111 LLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSDNNLSGTGDLNM----------VLLNL  178 (228)
Q Consensus       111 l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~p~----------~~~~l  178 (228)
                                   .+..+++|+.|++++|.+.. ++  ..+..+++|+.|++++|.++.  ..+.          .+..+
T Consensus       110 -------------~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_         110 -------------GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN--DYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             -------------HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHH--HHCTTTTHHHHHHHHHHHC
T ss_pred             -------------cccccccccccccccchhcc-ccccccccCCCccceeecCCCcccc--CcccccchhhHHHHHHHHC
Confidence                         24567889999999999973 43  467899999999999999874  2211          25678


Q ss_pred             CCCCEEEccCCccc
Q 041723          179 ESLTALVLSSNKLS  192 (228)
Q Consensus       179 ~~L~~L~L~~n~l~  192 (228)
                      ++|+.||  +.+++
T Consensus       174 p~L~~LD--~~~I~  185 (198)
T d1m9la_         174 PNLKKLD--GMPVD  185 (198)
T ss_dssp             SSCCEES--SGGGT
T ss_pred             CCcCEeC--CccCC
Confidence            8999875  55554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.6e-13  Score=105.39  Aligned_cols=182  Identities=18%  Similarity=0.213  Sum_probs=118.8

Q ss_pred             hhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCc-cCCCC-cchhccCCcchHHHHHhhhhcCC---CCCc-
Q 041723           13 TAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQV-NTAST-VPYASANLSSLFSLLSLIAYCKE---NFLP-   82 (228)
Q Consensus        13 ~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~~~l~~~~~---~~~p-   82 (228)
                      ...+..+++|++|.+.++.    .+..+.++++|++|++++| .++.. +...+..+++|++|+  +++|..   ..+. 
T Consensus        64 ~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~--ls~c~~~~~~~~~~  141 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN--LSWCFDFTEKHVQV  141 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE--CCCCTTCCHHHHHH
T ss_pred             HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccc--cccccccccccchh
Confidence            3457788899999999887    3567788899999999886 44432 223345678899988  888753   2222 


Q ss_pred             ccc-CCCCCcEEEeeCCc--CCCC-CCChhhcccccc--------ccccccchhhhcCCCCCEEeccCC-cccccCcccc
Q 041723           83 SLG-NLTKLNDLYLFGND--FSGK-VPDSLGDLLQLN--------YLTGEILVEIRKLTQLHILRLAEN-QLEGSVPSSI  149 (228)
Q Consensus        83 ~~~-~l~~L~~L~l~~n~--l~~~-~p~~~~~l~~~~--------~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~  149 (228)
                      .+. ..+.|+.|+++++.  +++. +......++++.        .+++..+..+.++++|++|++++| .+++.....+
T Consensus       142 ~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L  221 (284)
T d2astb2         142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  221 (284)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH
Confidence            233 34678889888753  3211 111112233322        234455667888999999999996 5776666678


Q ss_pred             ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723          150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN  202 (228)
Q Consensus       150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  202 (228)
                      +.+++|+.|+++++ +++ ..++.....+++|+   +..+.+++..+.. +++
T Consensus       222 ~~~~~L~~L~l~~~-~~d-~~l~~l~~~lp~L~---i~~~~ls~~~~~~-~~~  268 (284)
T d2astb2         222 GEIPTLKTLQVFGI-VPD-GTLQLLKEALPHLQ---INCSHFTTIARPT-IGN  268 (284)
T ss_dssp             GGCTTCCEEECTTS-SCT-TCHHHHHHHSTTSE---ESCCCSCCTTCSS-CSS
T ss_pred             hcCCCCCEEeeeCC-CCH-HHHHHHHHhCcccc---ccCccCCCCCCCc-cCc
Confidence            89999999999998 443 14444445566654   5677777655444 443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.9e-13  Score=109.14  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             hhcccccccccccCCCCh--------HHHHhccCCCCeeecCCccCCCC----------cchhccCCcchHHHHHhhhhc
Q 041723           15 AYGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNTAST----------VPYASANLSSLFSLLSLIAYC   76 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~l~~L~~L~~~l~~~   76 (228)
                      .+.....++.+++++|.+        ...+...++|+.++++++.....          +...+...++|+.|+  +++|
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~--L~~n  103 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR--LSDN  103 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE--CCSC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc--cccc
Confidence            344455666666666653        22344556666666665543211          123334455666666  6666


Q ss_pred             CCCC-----Cc-cccCCCCCcEEEeeCCcC
Q 041723           77 KENF-----LP-SLGNLTKLNDLYLFGNDF  100 (228)
Q Consensus        77 ~~~~-----~p-~~~~l~~L~~L~l~~n~l  100 (228)
                      .++.     +. .+...++|+.|++++|.+
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccccchhhhhcccccchheecccccc
Confidence            6622     11 333456666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=5.8e-13  Score=107.35  Aligned_cols=204  Identities=16%  Similarity=0.110  Sum_probs=121.1

Q ss_pred             hhcccccccccccCCCC--------------hHHHHhccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhc
Q 041723           15 AYGTASNAMKTLLQSPS--------------LANLAEKLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYC   76 (228)
Q Consensus        15 ~~~~l~~l~~l~l~~~~--------------l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~   76 (228)
                      .+...++++.+.+.++.              +.+.+..+++|++|++++|.+...    +...+...++|+.|+  +++|
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~--l~~n  131 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY--LHNN  131 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE--CCSS
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchhee--cccc
Confidence            35566788888877542              234566678888888888877654    334445667788888  8888


Q ss_pred             CCCCC---------c------cccCCCCCcEEEeeCCcCCCCCCChh----hccccc-------ccccc-----ccchhh
Q 041723           77 KENFL---------P------SLGNLTKLNDLYLFGNDFSGKVPDSL----GDLLQL-------NYLTG-----EILVEI  125 (228)
Q Consensus        77 ~~~~~---------p------~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~~-------~~l~~-----~~~~~~  125 (228)
                      .++..         .      .....+.|+.+.+++|.++......+    ...+..       +.+..     .+...+
T Consensus       132 ~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l  211 (344)
T d2ca6a1         132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL  211 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred             cccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhh
Confidence            76210         0      11245677888888777652111111    111111       11111     122335


Q ss_pred             hcCCCCCEEeccCCccccc----CccccccCCCCCEEEccCCccccC--CCcchhhhc--CCCCCEEEccCCccccccCc
Q 041723          126 RKLTQLHILRLAENQLEGS----VPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLN--LESLTALVLSSNKLSLLAGT  197 (228)
Q Consensus       126 ~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~  197 (228)
                      ...++|+.|++++|.+...    +...+..+++|++|++++|.+++.  ..+-..+..  ...|++|++++|.+......
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~  291 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  291 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH
Confidence            5677888888888887533    234456778888888888887741  012222332  35688888888887653222


Q ss_pred             cc---c-CCCCCcccccccccccccCc
Q 041723          198 TV---N-TNLPNFTIIGSVHETLASSH  220 (228)
Q Consensus       198 ~~---~-~~l~~L~~l~l~~n~~~~~~  220 (228)
                      .+   + .++++|+.|++++|++...+
T Consensus       292 ~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         292 TLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            10   2 25677888888888886543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.15  E-value=8.8e-11  Score=93.74  Aligned_cols=185  Identities=21%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcc------------------hhccCCcchHHHHHhhhhcCC-
Q 041723           21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVP------------------YASANLSSLFSLLSLIAYCKE-   78 (228)
Q Consensus        21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~~~~l~~L~~L~~~l~~~~~-   78 (228)
                      .|++|++++|.   +|+ +..+++|+.|+++++.+.....                  ..+..++.++.+.  +++|.. 
T Consensus        99 ~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~--l~~n~~~  175 (353)
T d1jl5a_          99 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY--ADNNSLK  175 (353)
T ss_dssp             TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE--CCSSCCS
T ss_pred             ccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecc--ccccccc
Confidence            58888888887   443 5678889999988876653211                  1222334444444  444433 


Q ss_pred             -------------------CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCC
Q 041723           79 -------------------NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAEN  139 (228)
Q Consensus        79 -------------------~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n  139 (228)
                                         ..++.+..++.|+.+++++|... .++.....+...................+...++..+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  254 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  254 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence                               22334455677788888777665 4444333322211000000000001112222222222


Q ss_pred             cccc----------------cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723          140 QLEG----------------SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL  203 (228)
Q Consensus       140 ~l~~----------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  203 (228)
                      .+.+                .++.....+++|++|++++|.++   .+|..   +++|++|++++|+++.. |..    +
T Consensus       255 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~---~~~L~~L~L~~N~L~~l-~~~----~  323 (353)
T d1jl5a_         255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI---ELPAL---PPRLERLIASFNHLAEV-PEL----P  323 (353)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS---CCCCC---CTTCCEEECCSSCCSCC-CCC----C
T ss_pred             cccccccccchhcccccccCccccccccCCCCCEEECCCCccC---ccccc---cCCCCEEECCCCcCCcc-ccc----c
Confidence            1110                01112234678899999998887   56643   56788899999988753 433    4


Q ss_pred             CCcccccccccccccCc
Q 041723          204 PNFTIIGSVHETLASSH  220 (228)
Q Consensus       204 ~~L~~l~l~~n~~~~~~  220 (228)
                      ++|++|++++|+++..|
T Consensus       324 ~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         324 QNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             TTCCEEECCSSCCSSCC
T ss_pred             CCCCEEECcCCcCCCCC
Confidence            57888888888888654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.6e-11  Score=85.41  Aligned_cols=104  Identities=22%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             CCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723           41 NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK-ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL  117 (228)
Q Consensus        41 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~-~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l  117 (228)
                      ..++++.+++.+.. .|..+..+++|+.|+  +.++. +..++  .|.++++|+.|++++|+++ .++.           
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~--l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~-----------   73 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELY--IENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP-----------   73 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEE--CCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECT-----------
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeee--cCCCccccccCchhhccccccCcceeeccccC-Cccc-----------
Confidence            34455555554433 344444555555555  54332 44443  4455555555555555554 2221           


Q ss_pred             ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723          118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL  165 (228)
Q Consensus       118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~  165 (228)
                           ..|..+++|++|++++|.++ .+|........|+.|++++|.+
T Consensus        74 -----~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          74 -----DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             -----TGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             -----ccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence                 12334455555555555554 3333322233455555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.8e-13  Score=110.25  Aligned_cols=97  Identities=14%  Similarity=0.056  Sum_probs=63.7

Q ss_pred             CcCCcccccc-hhhhcccccccccccCCCCh--------HHHHhccCCCCeeecCCccCCCCc----chhcc-CCcchHH
Q 041723            3 HHGTRKKKIA-TAAYGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNTASTV----PYASA-NLSSLFS   68 (228)
Q Consensus         3 ~~~~~~~~~~-~~~~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~-~l~~L~~   68 (228)
                      ++++++.... ...+..+++++.++|.+|.+        +..+..+++|++||+++|.++...    ...+. ...+|++
T Consensus         9 ~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~   88 (460)
T d1z7xw1           9 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   88 (460)
T ss_dssp             EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             eeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCE
Confidence            4455555533 23456677888888888863        345677888888888888775321    22222 2246888


Q ss_pred             HHHhhhhcCCCC-----Cc-cccCCCCCcEEEeeCCcCC
Q 041723           69 LLSLIAYCKENF-----LP-SLGNLTKLNDLYLFGNDFS  101 (228)
Q Consensus        69 L~~~l~~~~~~~-----~p-~~~~l~~L~~L~l~~n~l~  101 (228)
                      |+  +++|.++.     ++ .+..+++|++|++++|.++
T Consensus        89 L~--L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          89 LS--LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             EE--CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             EE--CCCCCccccccccccchhhccccccccccccccch
Confidence            88  88888832     23 5667788888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.6e-10  Score=93.90  Aligned_cols=186  Identities=19%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             ccccccccccCCCCh---------HHHHhccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhcCCCC--Cc
Q 041723           18 TASNAMKTLLQSPSL---------ANLAEKLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYCKENF--LP   82 (228)
Q Consensus        18 ~l~~l~~l~l~~~~l---------~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~~~~~--~p   82 (228)
                      ....++.+.+.++.+         +........++.+++++|.+...    ....+...+.++.++  +++|.++.  +.
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~--l~~n~i~~~~~~  301 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS--LAGNELGDEGAR  301 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE--CTTCCCHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            344555566665542         11223345666666666655422    112233344455555  55555511  11


Q ss_pred             ----c-ccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccc-cC
Q 041723           83 ----S-LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIF-EL  152 (228)
Q Consensus        83 ----~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~-~l  152 (228)
                          . ......|+.+++++|.++......             +...+...++|++|++++|.+.+..    +..+. ..
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~-------------l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~  368 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSH-------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  368 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHH-------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             hhhccccccccccccccccccchhhhhhhh-------------cccccccccchhhhheeeecccCcccchhhhhhhccc
Confidence                1 112345666666666554211111             1123445678899999998886432    22232 35


Q ss_pred             CCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCccc---c-CCCCCccccccccccccc
Q 041723          153 RNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTTV---N-TNLPNFTIIGSVHETLAS  218 (228)
Q Consensus       153 ~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~-~~l~~L~~l~l~~n~~~~  218 (228)
                      ..|+.|++++|.+++.  ..+...+...+.|++|++++|+++......+   + .+...|+.+++++|.+..
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            6789999999988741  1244556677889999999998875433220   1 234468888888777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.5e-08  Score=71.23  Aligned_cols=86  Identities=23%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             chhhhcCCCCCEEeccCCcccccC--ccccccCCCCCEEEccCCccccCCCcch-hhhcCCCCCEEEccCCccccccCcc
Q 041723          122 LVEIRKLTQLHILRLAENQLEGSV--PSSIFELRNLRALDLSDNNLSGTGDLNM-VLLNLESLTALVLSSNKLSLLAGTT  198 (228)
Q Consensus       122 ~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~  198 (228)
                      +.....+++|++|++++|.++...  +..+..+++|+.|++++|.+++   +++ ..-+...|+.+++++|++.......
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~---l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS---ERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC---GGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc---chhhhhhhccccceeecCCCCcCcCcccc
Confidence            334457899999999999998432  3456789999999999999995   333 2334567999999999998653321


Q ss_pred             ------ccCCCCCccccc
Q 041723          199 ------VNTNLPNFTIIG  210 (228)
Q Consensus       199 ------~~~~l~~L~~l~  210 (228)
                            .+..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                  256799999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.4e-08  Score=69.88  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=59.2

Q ss_pred             cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723          144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS  219 (228)
Q Consensus       144 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~  219 (228)
                      .++..+..++.|+.|++++|.+++...++..+..+++|+.|++++|.++....-. ......|+.+++++|.+...
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~-~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH-HHTTCCCSSCCCTTSTTSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhh-hhhccccceeecCCCCcCcC
Confidence            3444556899999999999999964345566788999999999999999765544 44456799999999988753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=5.6e-06  Score=58.86  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=34.3

Q ss_pred             hhcCCCCCEEeccCCcccccCc----cccccCCCCCEEEccCCccccC-----CCcchhhhcCCCCCEEEccCCc
Q 041723          125 IRKLTQLHILRLAENQLEGSVP----SSIFELRNLRALDLSDNNLSGT-----GDLNMVLLNLESLTALVLSSNK  190 (228)
Q Consensus       125 ~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~-----~~~p~~~~~l~~L~~L~L~~n~  190 (228)
                      +...+.|++|++++|.+.+...    ..+...++|++|++++|.+...     ..+...+...+.|+.++++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3445566666666666653221    2344555666666666654321     0133344455666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=1.9e-05  Score=55.94  Aligned_cols=66  Identities=15%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             CCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCc---ccc----cCccccccCCCCCEE
Q 041723           86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ---LEG----SVPSSIFELRNLRAL  158 (228)
Q Consensus        86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~---l~~----~~~~~~~~l~~L~~L  158 (228)
                      ..+.|+.|++++|.++.   .++.          .+...+...++|++|++++|.   +..    .+...+...++|+.+
T Consensus        70 ~n~~L~~L~L~~n~i~~---~g~~----------~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l  136 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTP---ELLA----------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV  136 (167)
T ss_dssp             HCSSCCEEECCSSBCCH---HHHH----------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             hcccccceeeehhhcch---HHHH----------HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEe
Confidence            34567777777777652   1111          112234556677777777652   321    133445566777777


Q ss_pred             EccCCc
Q 041723          159 DLSDNN  164 (228)
Q Consensus       159 ~l~~n~  164 (228)
                      +++.+.
T Consensus       137 ~l~~~~  142 (167)
T d1pgva_         137 GISFAS  142 (167)
T ss_dssp             ECCCCC
T ss_pred             eCcCCC
Confidence            776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.90  E-value=8.4e-05  Score=52.32  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             ccccchhhhcccccccccccCCC-Ch--------HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723            8 KKKIATAAYGTASNAMKTLLQSP-SL--------ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE   78 (228)
Q Consensus         8 ~~~~~~~~~~~l~~l~~l~l~~~-~l--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~   78 (228)
                      ++.+......+.++|+++.+++. .+        -..+...++|++|++++|.+.....         ..+.        
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~---------~~L~--------   67 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA---------FALA--------   67 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH---------HHHH--------
T ss_pred             HHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH---------HHHH--------
Confidence            33444445556677888888763 32        2345567778888888876653211         1111        


Q ss_pred             CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEec--cCCccccc----CccccccC
Q 041723           79 NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL--AENQLEGS----VPSSIFEL  152 (228)
Q Consensus        79 ~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~l--s~n~l~~~----~~~~~~~l  152 (228)
                         ..+...+.++.+++.+|.++   ++++.          .+...+...++|+.+++  ++|.+...    +...+...
T Consensus        68 ---~~l~~~~~l~~l~l~~~~~~---~~g~~----------~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n  131 (166)
T d1io0a_          68 ---EMLKVNNTLKSLNVESNFIS---GSGIL----------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN  131 (166)
T ss_dssp             ---HHHHHCSSCCEEECCSSCCC---HHHHH----------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC
T ss_pred             ---HHHhhcccchhhhhcccccc---chhHH----------HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhC
Confidence               02234467888888888776   22221          12234566777876544  56677543    33456678


Q ss_pred             CCCCEEEccCCcc
Q 041723          153 RNLRALDLSDNNL  165 (228)
Q Consensus       153 ~~L~~L~l~~n~~  165 (228)
                      ++|+.|+++.+..
T Consensus       132 ~~L~~L~l~~~~~  144 (166)
T d1io0a_         132 TTLLKFGYHFTQQ  144 (166)
T ss_dssp             SSCCEEECCCSSH
T ss_pred             CCcCEEeCcCCCC
Confidence            8899998877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.71  E-value=4.7e-05  Score=53.68  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             HHhccCCCCeeecCCc-cCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723           35 LAEKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ  113 (228)
Q Consensus        35 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  113 (228)
                      ...+.+.|++|+++++ .++.   .      .+..+.           ..+...+.|+.|++++|.++.   .+..    
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~---~------~~~~l~-----------~al~~n~~L~~L~Ls~n~l~~---~~~~----   64 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPV---P------TLKACA-----------EALKTNTYVKKFSIVGTRSND---PVAF----   64 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCH---H------HHHHHH-----------HHHTTCCSCCEEECTTSCCCH---HHHH----
T ss_pred             HHhcCCCCcEEEcCCCCCCCH---H------HHHHHH-----------HHHhcCCccCeeeccCCcccH---HHHH----
Confidence            3445688999999864 3432   1      122222           134567889999999998862   2221    


Q ss_pred             ccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCCCCEEEcc--CCccccC--CCcchhhhcCCCCCEEE
Q 041723          114 LNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRNLRALDLS--DNNLSGT--GDLNMVLLNLESLTALV  185 (228)
Q Consensus       114 ~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~--~n~~~~~--~~~p~~~~~l~~L~~L~  185 (228)
                            .+...+...+.++.+++++|.+....    ...+...++|+.++++  +|.+.+.  ..+...+...+.|+.|+
T Consensus        65 ------~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~  138 (166)
T d1io0a_          65 ------ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG  138 (166)
T ss_dssp             ------HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             ------HHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEe
Confidence                  12234566789999999999986432    2456778899987665  5566531  13445667889999999


Q ss_pred             ccCCccc
Q 041723          186 LSSNKLS  192 (228)
Q Consensus       186 L~~n~l~  192 (228)
                      ++.+...
T Consensus       139 l~~~~~~  145 (166)
T d1io0a_         139 YHFTQQG  145 (166)
T ss_dssp             CCCSSHH
T ss_pred             CcCCCCc
Confidence            9877543